[266] | 1 | |
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[219] | 2 | #include "nc4_data_output.hpp" |
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| 3 | |
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| 4 | #include <boost/lexical_cast.hpp> |
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| 5 | #include "attribute_template_impl.hpp" |
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[274] | 6 | #include "group_template_impl.hpp" |
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[219] | 7 | |
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| 8 | #include "file.hpp" |
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| 9 | #include "calendar.hpp" |
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[278] | 10 | #include "context.hpp" |
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[300] | 11 | #include "context_server.hpp" |
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[219] | 12 | |
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[335] | 13 | namespace xios |
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[219] | 14 | { |
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| 15 | /// ////////////////////// Définitions ////////////////////// /// |
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| 16 | CNc4DataOutput::CNc4DataOutput |
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| 17 | (const StdString & filename, bool exist) |
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| 18 | : SuperClass() |
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| 19 | , SuperClassWriter(filename, exist) |
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| 20 | , filename(filename) |
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| 21 | { |
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| 22 | StdString timeid = StdString("time_counter"); |
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| 23 | SuperClass::type = MULTI_FILE; |
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| 24 | if (!exist) |
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| 25 | SuperClassWriter::addDimension(timeid); |
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| 26 | } |
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| 27 | |
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| 28 | CNc4DataOutput::CNc4DataOutput |
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[335] | 29 | (const StdString & filename, bool exist, MPI_Comm comm_server,bool multifile, bool isCollective) |
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[219] | 30 | : SuperClass() |
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[286] | 31 | , SuperClassWriter(filename, exist, &comm_server,multifile) |
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[219] | 32 | , comm_server(comm_server) |
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| 33 | , filename(filename) |
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[335] | 34 | , isCollective(isCollective) |
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[219] | 35 | { |
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| 36 | StdString timeid = StdString("time_counter"); |
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| 37 | |
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[286] | 38 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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| 39 | |
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[219] | 40 | if (!exist) |
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| 41 | SuperClassWriter::addDimension(timeid); |
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| 42 | } |
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| 43 | |
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[286] | 44 | |
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[219] | 45 | CNc4DataOutput::~CNc4DataOutput(void) |
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| 46 | { /* Ne rien faire de plus */ } |
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| 47 | |
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| 48 | ///-------------------------------------------------------------- |
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| 49 | |
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| 50 | const StdString & CNc4DataOutput::getFileName(void) const |
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| 51 | { |
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| 52 | return (this->filename); |
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| 53 | } |
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| 54 | |
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| 55 | //--------------------------------------------------------------- |
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| 56 | |
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[347] | 57 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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[219] | 58 | { |
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[347] | 59 | CContext* context = CContext::getCurrent() ; |
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[300] | 60 | CContextServer* server=context->server ; |
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| 61 | |
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[219] | 62 | if (domain->IsWritten(this->filename)) return; |
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| 63 | domain->checkAttributes(); |
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| 64 | |
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[300] | 65 | if (domain->isEmpty()) |
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| 66 | if (SuperClass::type==MULTI_FILE) return ; |
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[219] | 67 | |
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| 68 | std::vector<StdString> dim0, dim1; |
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| 69 | StdString domid = (!domain->name.isEmpty()) |
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| 70 | ? domain->name.getValue() : domain->getId(); |
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[318] | 71 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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| 72 | |
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| 73 | StdString lonid = StdString("lon").append(appendDomid); |
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| 74 | StdString latid = StdString("lat").append(appendDomid); |
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[300] | 75 | StdString lonid_loc = (server->intraCommSize > 1) |
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[318] | 76 | ? StdString("lon").append(appendDomid).append("_local") |
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[278] | 77 | : lonid; |
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[300] | 78 | StdString latid_loc = (server->intraCommSize > 1) |
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[318] | 79 | ? StdString("lat").append(appendDomid).append("_local") |
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[278] | 80 | : latid; |
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[300] | 81 | // supress mask StdString maskid = StdString("mask_").append(domid).append("_local"); |
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[219] | 82 | |
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[300] | 83 | // supress mask ARRAY(int, 2) mask = domain->getLocalMask(); |
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[219] | 84 | |
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[300] | 85 | // unsigned int ssize = domain->zoom_ni_loc.getValue() * domain->zoom_nj_loc.getValue(); |
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| 86 | // bool isCurvilinear = (domain->lonvalue.getValue()->size() == ssize); |
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| 87 | bool isCurvilinear = true ; //for moment |
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[219] | 88 | |
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| 89 | switch (SuperClass::type) |
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| 90 | { |
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| 91 | case (MULTI_FILE) : |
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| 92 | { |
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[300] | 93 | // if (domain->isEmpty()) return; |
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[286] | 94 | |
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[300] | 95 | if (server->intraCommSize > 1) |
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[286] | 96 | { |
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| 97 | SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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| 98 | SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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| 99 | } |
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| 100 | |
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| 101 | if (isCurvilinear) |
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| 102 | { |
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| 103 | dim0.push_back(latid_loc); dim0.push_back(lonid_loc); |
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[318] | 104 | lonid = StdString("nav_lon").append(appendDomid); |
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| 105 | latid = StdString("nav_lat").append(appendDomid); |
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[286] | 106 | } |
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| 107 | else |
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| 108 | { |
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| 109 | dim0.push_back(latid_loc); |
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| 110 | dim1.push_back(lonid_loc); |
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| 111 | } |
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| 112 | |
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[300] | 113 | SuperClassWriter::addDimension(lonid_loc, domain->zoom_ni_srv); |
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| 114 | SuperClassWriter::addDimension(latid_loc, domain->zoom_nj_srv); |
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| 115 | if (server->intraCommSize > 1) |
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[278] | 116 | { |
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[300] | 117 | this->writeLocalAttributes(domain->zoom_ibegin_srv, |
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| 118 | domain->zoom_ni_srv, |
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| 119 | domain->zoom_jbegin_srv, |
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| 120 | domain->zoom_nj_srv, |
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[318] | 121 | appendDomid); |
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[278] | 122 | } |
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| 123 | |
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[219] | 124 | if (isCurvilinear) |
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| 125 | { |
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| 126 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 127 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 128 | } |
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| 129 | else |
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| 130 | { |
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| 131 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 132 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 133 | } |
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| 134 | this->writeAxisAttributes |
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[286] | 135 | (lonid, "X", "longitude", "Longitude", "degrees_east", domid); |
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[219] | 136 | this->writeAxisAttributes |
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[286] | 137 | (latid, "Y", "latitude", "Latitude", "degrees_north", domid); |
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[219] | 138 | |
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| 139 | dim0.clear(); |
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| 140 | dim0.push_back(latid_loc); |
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| 141 | dim0.push_back(lonid_loc); |
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| 142 | |
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| 143 | |
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[300] | 144 | // supress mask if (server->intraCommSize > 1) |
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| 145 | // supress mask { |
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| 146 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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| 147 | // supress mask |
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| 148 | // supress mask this->writeMaskAttributes(maskid, |
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| 149 | // supress mask domain->data_dim.getValue()/*, |
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| 150 | // supress mask domain->data_ni.getValue(), |
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| 151 | // supress mask domain->data_nj.getValue(), |
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| 152 | // supress mask domain->data_ibegin.getValue(), |
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| 153 | // supress mask domain->data_jbegin.getValue()*/); |
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| 154 | // supress mask } |
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[219] | 155 | |
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[266] | 156 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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[219] | 157 | |
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| 158 | SuperClassWriter::definition_end(); |
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[335] | 159 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
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| 160 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
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[300] | 161 | // supress mask if (server->intraCommSize > 1) SuperClassWriter::writeData(mask, maskid); |
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[219] | 162 | SuperClassWriter::definition_start(); |
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| 163 | |
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| 164 | break; |
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| 165 | } |
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[286] | 166 | case (ONE_FILE) : |
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| 167 | { |
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| 168 | SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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| 169 | SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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| 170 | |
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| 171 | |
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| 172 | if (isCurvilinear) |
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| 173 | { |
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| 174 | dim0.push_back(latid); dim0.push_back(lonid); |
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[318] | 175 | lonid = StdString("nav_lon").append(appendDomid); |
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| 176 | latid = StdString("nav_lat").append(appendDomid); |
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[286] | 177 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 178 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 179 | } |
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| 180 | else |
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| 181 | { |
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| 182 | dim0.push_back(latid); |
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| 183 | dim1.push_back(lonid); |
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| 184 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 185 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 186 | } |
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| 187 | this->writeAxisAttributes |
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| 188 | (latid, "X", "longitude", "Longitude", "degrees_east", domid); |
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| 189 | this->writeAxisAttributes |
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| 190 | (lonid, "Y", "latitude", "Latitude", "degrees_north", domid); |
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| 191 | |
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| 192 | |
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| 193 | SuperClassWriter::definition_end(); |
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| 194 | std::vector<StdSize> start(2) ; |
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| 195 | std::vector<StdSize> count(2) ; |
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| 196 | if (domain->isEmpty()) |
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| 197 | { |
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| 198 | start[0]=0 ; start [1]=0 ; |
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| 199 | count[0]=0 ; count[1]=0 ; |
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| 200 | } |
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| 201 | else |
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| 202 | { |
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[300] | 203 | start[1]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start [0]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; |
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| 204 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
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[286] | 205 | } |
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| 206 | |
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[335] | 207 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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| 208 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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[286] | 209 | SuperClassWriter::definition_start(); |
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| 210 | |
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| 211 | break; |
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| 212 | } |
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[219] | 213 | default : |
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| 214 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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| 215 | << "[ type = " << SuperClass::type << "]" |
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| 216 | << " not implemented yet !"); |
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| 217 | } |
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| 218 | domain->addRelFile(this->filename); |
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| 219 | } |
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| 220 | |
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| 221 | //-------------------------------------------------------------- |
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| 222 | |
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[347] | 223 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
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[219] | 224 | { |
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| 225 | if (axis->IsWritten(this->filename)) return; |
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| 226 | axis->checkAttributes(); |
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[351] | 227 | StdSize zoom_size=axis->zoom_size.getValue() ; |
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| 228 | StdSize zoom_begin=axis->zoom_begin.getValue()-1 ; |
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| 229 | |
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[219] | 230 | std::vector<StdString> dims; |
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| 231 | StdString axisid = (!axis->name.isEmpty()) |
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| 232 | ? axis->name.getValue() : axis->getId(); |
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[351] | 233 | SuperClassWriter::addDimension(axisid, zoom_size); |
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[219] | 234 | dims.push_back(axisid); |
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[286] | 235 | |
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[219] | 236 | switch (SuperClass::type) |
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| 237 | { |
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[286] | 238 | case (MULTI_FILE ) : |
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| 239 | {} |
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[278] | 240 | case (ONE_FILE) : |
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[219] | 241 | { |
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| 242 | SuperClassWriter::addVariable(axisid, NC_FLOAT, dims); |
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| 243 | |
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| 244 | SuperClassWriter::addAttribute("axis", StdString("Z"), &axisid); |
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| 245 | |
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| 246 | if (!axis->standard_name.isEmpty()) |
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| 247 | SuperClassWriter::addAttribute |
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| 248 | ("standard_name", axis->standard_name.getValue(), &axisid); |
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| 249 | |
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| 250 | if (!axis->long_name.isEmpty()) |
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| 251 | SuperClassWriter::addAttribute |
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| 252 | ("long_name", axis->long_name.getValue(), &axisid); |
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| 253 | |
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| 254 | if (!axis->unit.isEmpty()) |
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| 255 | SuperClassWriter::addAttribute |
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| 256 | ("units", axis->unit.getValue(), &axisid); |
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| 257 | |
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| 258 | SuperClassWriter::definition_end(); |
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[351] | 259 | |
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| 260 | ARRAY(double,1) axis_value=axis->value.getValue() ; |
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| 261 | ARRAY_CREATE(value,double,1,[zoom_size]) ; |
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| 262 | for(StdSize i = 0 ; i < zoom_size ; i++) (*value)[i]=(*axis_value)[i+zoom_begin] ; |
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| 263 | SuperClassWriter::writeData(value, axisid, isCollective, 0); |
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| 264 | |
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[219] | 265 | SuperClassWriter::definition_start(); |
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| 266 | |
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| 267 | break; |
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| 268 | } |
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| 269 | default : |
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| 270 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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| 271 | << "[ type = " << SuperClass::type << "]" |
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| 272 | << " not implemented yet !"); |
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| 273 | } |
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| 274 | axis->addRelFile(this->filename); |
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| 275 | } |
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| 276 | |
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| 277 | //-------------------------------------------------------------- |
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| 278 | |
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[347] | 279 | void CNc4DataOutput::writeField_(CField* field) |
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[219] | 280 | { |
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[347] | 281 | CContext* context = CContext::getCurrent() ; |
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[300] | 282 | CContextServer* server=context->server ; |
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| 283 | |
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[219] | 284 | std::vector<StdString> dims, coodinates; |
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[347] | 285 | CGrid* grid = field->grid; |
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| 286 | CDomain* domain = grid->domain; |
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[286] | 287 | |
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| 288 | if (domain->isEmpty()) |
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| 289 | if (SuperClass::type==MULTI_FILE) return ; |
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[219] | 290 | |
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| 291 | StdString timeid = StdString("time_counter"); |
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| 292 | StdString domid = (!domain->name.isEmpty()) |
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| 293 | ? domain->name.getValue() : domain->getId(); |
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[318] | 294 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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| 295 | |
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| 296 | StdString lonid = StdString("lon").append(appendDomid); |
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| 297 | StdString latid = StdString("lat").append(appendDomid); |
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[300] | 298 | StdString lonid_loc = (server->intraCommSize > 1) |
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[318] | 299 | ? StdString("lon").append(appendDomid).append("_local") |
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[278] | 300 | : lonid; |
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[300] | 301 | StdString latid_loc = (server->intraCommSize > 1) |
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[318] | 302 | ? StdString("lat").append(appendDomid).append("_local") |
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[278] | 303 | : latid; |
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[219] | 304 | StdString fieldid = (!field->name.isEmpty()) |
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| 305 | ? field->name.getValue() : field->getBaseFieldReference()->getId(); |
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| 306 | |
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[300] | 307 | // unsigned int ssize = domain->zoom_ni_loc.getValue() * domain->zoom_nj_loc.getValue(); |
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| 308 | // bool isCurvilinear = (domain->lonvalue.getValue()->size() == ssize); |
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| 309 | bool isCurvilinear = true ; // for moment |
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| 310 | |
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[219] | 311 | nc_type type = (!field->prec.isEmpty() && |
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| 312 | ( field->prec.getValue() == 4)) |
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| 313 | ? NC_FLOAT : NC_DOUBLE; |
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| 314 | bool wtime = !(!field->operation.isEmpty() && |
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| 315 | ( field->operation.getValue().compare("once") == 0)); |
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| 316 | |
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| 317 | if (wtime) |
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| 318 | { |
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| 319 | StdOStringStream oss; |
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| 320 | oss << "time_" << field->operation.getValue() |
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| 321 | << "_" << field->getRelFile()->output_freq.getValue(); |
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| 322 | |
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| 323 | coodinates.push_back(oss.str()); |
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| 324 | dims.push_back(timeid); |
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| 325 | } |
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| 326 | |
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| 327 | if (!grid->axis_ref.isEmpty()) |
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| 328 | { |
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[347] | 329 | CAxis* axis = grid->axis ; |
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[300] | 330 | StdString axisid = (!axis->name.isEmpty()) ? axis->name.getValue() : axis->getId(); |
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[219] | 331 | dims.push_back(axisid); |
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| 332 | coodinates.push_back(axisid); |
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| 333 | } |
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| 334 | |
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| 335 | if (isCurvilinear) |
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| 336 | { |
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[318] | 337 | coodinates.push_back(StdString("nav_lat").append(appendDomid)); |
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| 338 | coodinates.push_back(StdString("nav_lon").append(appendDomid)); |
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[219] | 339 | } |
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| 340 | else |
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| 341 | { |
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| 342 | coodinates.push_back(latid); |
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| 343 | coodinates.push_back(lonid); |
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| 344 | } |
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| 345 | |
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| 346 | switch (SuperClass::type) |
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| 347 | { |
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| 348 | case (MULTI_FILE) : |
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| 349 | { |
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| 350 | dims.push_back(latid_loc); |
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| 351 | dims.push_back(lonid_loc); |
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[286] | 352 | break ; |
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| 353 | } |
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| 354 | case (ONE_FILE) : |
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| 355 | { |
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| 356 | dims.push_back(latid); |
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| 357 | dims.push_back(lonid); |
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| 358 | break; |
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| 359 | } |
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| 360 | default : |
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| 361 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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| 362 | << "[ type = " << SuperClass::type << "]" |
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| 363 | << " not implemented yet !"); |
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| 364 | } |
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| 365 | |
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| 366 | SuperClassWriter::addVariable(fieldid, type, dims); |
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| 367 | |
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| 368 | if (!field->standard_name.isEmpty()) |
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| 369 | SuperClassWriter::addAttribute |
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| 370 | ("standard_name", field->standard_name.getValue(), &fieldid); |
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[219] | 371 | |
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[286] | 372 | if (!field->long_name.isEmpty()) |
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| 373 | SuperClassWriter::addAttribute |
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| 374 | ("long_name", field->long_name.getValue(), &fieldid); |
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[219] | 375 | |
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[286] | 376 | if (!field->unit.isEmpty()) |
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| 377 | SuperClassWriter::addAttribute |
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| 378 | ("units", field->unit.getValue(), &fieldid); |
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[219] | 379 | |
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[286] | 380 | SuperClassWriter::addAttribute |
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| 381 | ("online_operation", field->operation.getValue(), &fieldid); |
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[219] | 382 | |
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[286] | 383 | if (wtime) |
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| 384 | { |
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| 385 | SuperClassWriter::addAttribute |
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| 386 | ("interval_operation", field->freq_op.getValue(), &fieldid); |
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| 387 | SuperClassWriter::addAttribute |
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| 388 | ("interval_write", field->getRelFile()->output_freq.getValue(), &fieldid); |
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| 389 | } |
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| 390 | |
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| 391 | if (!field->default_value.isEmpty()) |
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| 392 | { |
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| 393 | double default_value = field->default_value.getValue(); |
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| 394 | float fdefault_value = (float)default_value; |
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| 395 | if (type == NC_DOUBLE) |
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| 396 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
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| 397 | else |
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| 398 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
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| 399 | } |
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| 400 | else |
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| 401 | { |
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| 402 | double * default_value = NULL; |
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| 403 | SuperClassWriter::setDefaultValue(fieldid, default_value); |
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| 404 | } |
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[219] | 405 | |
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[286] | 406 | { // Ecriture des coordonnées |
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| 407 | |
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| 408 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
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| 409 | std::vector<StdString>::iterator |
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| 410 | itc = coodinates.begin(), endc = coodinates.end(); |
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| 411 | |
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| 412 | for (; itc!= endc; itc++) |
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| 413 | { |
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| 414 | StdString & coord = *itc; |
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| 415 | if (itc+1 != endc) |
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| 416 | coordstr.append(coord).append(" "); |
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| 417 | else coordstr.append(coord); |
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| 418 | } |
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[219] | 419 | |
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[286] | 420 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
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[219] | 421 | |
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| 422 | } |
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[286] | 423 | |
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[219] | 424 | } |
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| 425 | |
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| 426 | //-------------------------------------------------------------- |
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| 427 | |
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[347] | 428 | void CNc4DataOutput::writeFile_ (CFile* file) |
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[219] | 429 | { |
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| 430 | StdString filename = (!file->name.isEmpty()) |
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| 431 | ? file->name.getValue() : file->getId(); |
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| 432 | StdString description = (!file->description.isEmpty()) |
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| 433 | ? file->description.getValue() |
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[335] | 434 | : StdString("Created by xios"); |
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[219] | 435 | this->writeFileAttributes(filename, description, |
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| 436 | StdString ("CF-1.1"), |
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| 437 | StdString("An IPSL model"), |
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| 438 | this->getTimeStamp()); |
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[318] | 439 | if (file->nbDomain==1) singleDomain=true ; |
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| 440 | else singleDomain=false ; |
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[219] | 441 | } |
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[321] | 442 | |
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| 443 | void CNc4DataOutput::syncFile_ (void) |
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| 444 | { |
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| 445 | SuperClassWriter::sync() ; |
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| 446 | } |
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[219] | 447 | |
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[286] | 448 | void CNc4DataOutput::closeFile_ (void) |
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| 449 | { |
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| 450 | SuperClassWriter::close() ; |
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| 451 | } |
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| 452 | |
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[219] | 453 | //--------------------------------------------------------------- |
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| 454 | |
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| 455 | StdString CNc4DataOutput::getTimeStamp(void) const |
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| 456 | { |
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| 457 | const int buffer_size = 100; |
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| 458 | time_t rawtime; |
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| 459 | struct tm * timeinfo = NULL; |
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| 460 | char buffer [buffer_size]; |
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| 461 | |
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| 462 | time ( &rawtime ); |
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| 463 | timeinfo = localtime ( &rawtime ); |
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| 464 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
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| 465 | |
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| 466 | return (StdString(buffer)); |
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| 467 | } |
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| 468 | |
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| 469 | //--------------------------------------------------------------- |
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| 470 | |
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[347] | 471 | void CNc4DataOutput::writeFieldData_ (CField* field) |
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[219] | 472 | { |
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[347] | 473 | CContext* context = CContext::getCurrent() ; |
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[321] | 474 | // if (field->getRelFile()->isSyncTime()) SuperClassWriter::sync() ; |
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[300] | 475 | |
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[347] | 476 | CGrid* grid = field->grid ; |
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| 477 | CDomain* domain = grid->domain ; |
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[286] | 478 | |
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[335] | 479 | if(SuperClass::type==MULTI_FILE || !isCollective) if (domain->isEmpty()) return; |
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[286] | 480 | |
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| 481 | |
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[300] | 482 | StdString fieldid = (!field->name.isEmpty()) |
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[219] | 483 | ? field->name.getValue() |
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| 484 | : field->getBaseFieldReference()->getId(); |
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[278] | 485 | |
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| 486 | StdOStringStream oss; |
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| 487 | oss << "time_" << field->operation.getValue() |
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| 488 | << "_" << field->getRelFile()->output_freq.getValue(); |
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| 489 | |
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[300] | 490 | // ARRAY(double, 1) field_data = field->data_srv; |
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[278] | 491 | ARRAY_CREATE(time_data, double, 1, [1]); |
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[343] | 492 | if (field->operation.getValue()=="instant") (*time_data)[0] = Time(*field->last_Write_srv) |
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| 493 | -Time(context->calendar->getTimeOrigin()); |
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| 494 | else (*time_data)[0] = (Time(*field->last_Write_srv)+Time(*field->lastlast_Write_srv))/2 |
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| 495 | -Time(context->calendar->getTimeOrigin()); |
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[334] | 496 | |
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[219] | 497 | if (grid->hasAxis()) // 3D |
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| 498 | { |
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[347] | 499 | CAxis* axis = grid->axis ; |
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[351] | 500 | ARRAY_CREATE(field_data3D,double,3,[domain->zoom_ni_srv][domain->zoom_nj_srv][axis->zoom_size.getValue()]) ; |
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[300] | 501 | field->outputField(field_data3D); |
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[286] | 502 | switch (SuperClass::type) |
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| 503 | { |
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| 504 | case (MULTI_FILE) : |
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| 505 | { |
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[335] | 506 | SuperClassWriter::writeData(field_data3D, fieldid, isCollective, field->getNStep()-1); |
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| 507 | SuperClassWriter::writeData(time_data, oss.str(), isCollective, field->getNStep()-1); |
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[286] | 508 | break ; |
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| 509 | } |
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| 510 | case (ONE_FILE) : |
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| 511 | { |
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| 512 | std::vector<StdSize> start(3) ; |
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| 513 | std::vector<StdSize> count(3) ; |
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| 514 | if (domain->isEmpty()) |
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| 515 | { |
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| 516 | start[0]=0 ; start[1]=0 ; start[2]=0 ; |
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| 517 | count[0]=0 ; count[1]=0 ; start[2]=0 ; |
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| 518 | } |
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| 519 | else |
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| 520 | { |
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| 521 | // start[2]=domain->zoom_ibegin_loc.getValue()-domain->zoom_ibegin.getValue() ; start [1]=domain->zoom_jbegin_loc.getValue()-domain->zoom_jbegin.getValue() ; start[0]=0 ; |
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[300] | 522 | start[2]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start [1]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; start[0]=0 ; |
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[351] | 523 | count[2]=domain->zoom_ni_srv ; count[1]=domain->zoom_nj_srv ; count[0] = axis->zoom_size.getValue(); |
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[286] | 524 | } |
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[335] | 525 | SuperClassWriter::writeData(field_data3D, fieldid, isCollective, field->getNStep()-1,&start,&count ); |
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| 526 | SuperClassWriter::writeData(time_data, oss.str(), isCollective, field->getNStep()-1 ); |
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[286] | 527 | break; |
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| 528 | } |
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| 529 | } |
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[219] | 530 | |
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| 531 | } |
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| 532 | else // 2D |
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| 533 | { |
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[300] | 534 | ARRAY_CREATE(field_data2D,double,2,[domain->zoom_ni_srv][domain->zoom_nj_srv]) ; |
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| 535 | field->outputField(field_data2D); |
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[286] | 536 | switch (SuperClass::type) |
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| 537 | { |
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| 538 | case (MULTI_FILE) : |
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| 539 | { |
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[335] | 540 | SuperClassWriter::writeData(field_data2D, fieldid, isCollective, field->getNStep()-1); |
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| 541 | SuperClassWriter::writeData(time_data, oss.str(), isCollective, field->getNStep()-1); |
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[286] | 542 | break; |
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| 543 | } |
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| 544 | case (ONE_FILE) : |
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| 545 | { |
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| 546 | std::vector<StdSize> start(2) ; |
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| 547 | std::vector<StdSize> count(2) ; |
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| 548 | if (domain->isEmpty()) |
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| 549 | { |
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| 550 | start[0]=0 ; start[1]=0 ; |
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| 551 | count[0]=0 ; count[1]=0 ; |
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| 552 | } |
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| 553 | else |
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| 554 | { |
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[300] | 555 | start[1]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start[0]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; |
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| 556 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
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[286] | 557 | } |
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[300] | 558 | |
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[335] | 559 | SuperClassWriter::writeData(field_data2D, fieldid, isCollective, field->getNStep()-1,&start,&count); |
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| 560 | SuperClassWriter::writeData(time_data, oss.str(), isCollective, field->getNStep()-1); |
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[286] | 561 | break; |
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| 562 | |
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| 563 | } |
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| 564 | } |
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[219] | 565 | } |
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| 566 | } |
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| 567 | |
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| 568 | //--------------------------------------------------------------- |
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| 569 | |
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| 570 | void CNc4DataOutput::writeTimeAxis_ |
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[347] | 571 | (CField* field, |
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[343] | 572 | const boost::shared_ptr<CCalendar> cal) |
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[219] | 573 | { |
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| 574 | StdOStringStream oss; |
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| 575 | oss << "time_" << field->operation.getValue() |
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| 576 | << "_" << field->getRelFile()->output_freq.getValue(); |
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| 577 | |
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| 578 | std::vector<StdString> dims; |
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| 579 | StdString axisid = oss.str(); |
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| 580 | StdString timeid = StdString("time_counter"); |
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| 581 | |
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| 582 | dims.push_back(timeid); |
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| 583 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 584 | { |
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| 585 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
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[343] | 586 | CDate timeOrigin=cal->getTimeOrigin() ; |
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[316] | 587 | // StdOStringStream oss2; |
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| 588 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
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| 589 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
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| 590 | // StdString strInitdate=oss2.str() ; |
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[334] | 591 | StdString strTimeOrigin=timeOrigin.toString() ; |
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[219] | 592 | this->writeTimeAxisAttributes |
---|
[292] | 593 | (axisid, cal->getType(), |
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[334] | 594 | StdString("seconds since ").append(strTimeOrigin), |
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| 595 | strTimeOrigin); |
---|
[219] | 596 | } |
---|
| 597 | |
---|
| 598 | } |
---|
| 599 | |
---|
| 600 | //--------------------------------------------------------------- |
---|
| 601 | |
---|
| 602 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
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| 603 | const StdString & calendar, |
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| 604 | const StdString & units, |
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| 605 | const StdString & time_origin, |
---|
| 606 | const StdString & standard_name, |
---|
| 607 | const StdString & long_name, |
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| 608 | const StdString & title) |
---|
| 609 | { |
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| 610 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
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| 611 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
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| 612 | SuperClassWriter::addAttribute("title", title , &axis_name); |
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| 613 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
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| 614 | SuperClassWriter::addAttribute("units", units , &axis_name); |
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| 615 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
| 616 | } |
---|
| 617 | |
---|
| 618 | //--------------------------------------------------------------- |
---|
| 619 | |
---|
| 620 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
| 621 | const StdString & axis, |
---|
| 622 | const StdString & standard_name, |
---|
| 623 | const StdString & long_name, |
---|
| 624 | const StdString & units, |
---|
| 625 | const StdString & nav_model) |
---|
| 626 | { |
---|
| 627 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
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| 628 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 629 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
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| 630 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
| 631 | SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
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| 632 | } |
---|
| 633 | |
---|
| 634 | //--------------------------------------------------------------- |
---|
| 635 | |
---|
| 636 | void CNc4DataOutput::writeLocalAttributes |
---|
| 637 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
| 638 | { |
---|
[318] | 639 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
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| 640 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
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| 641 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
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| 642 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
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[219] | 643 | } |
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| 644 | |
---|
| 645 | //--------------------------------------------------------------- |
---|
| 646 | |
---|
| 647 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
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| 648 | const StdString & description, |
---|
| 649 | const StdString & conventions, |
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| 650 | const StdString & production, |
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| 651 | const StdString & timeStamp) |
---|
| 652 | { |
---|
| 653 | SuperClassWriter::addAttribute("name" , name); |
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| 654 | SuperClassWriter::addAttribute("description", description); |
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| 655 | SuperClassWriter::addAttribute("conventions", conventions); |
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| 656 | SuperClassWriter::addAttribute("production" , production); |
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| 657 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
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| 658 | } |
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| 659 | |
---|
| 660 | //--------------------------------------------------------------- |
---|
| 661 | |
---|
| 662 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
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| 663 | int data_dim, |
---|
| 664 | int data_ni, |
---|
| 665 | int data_nj, |
---|
| 666 | int data_ibegin, |
---|
| 667 | int data_jbegin) |
---|
| 668 | { |
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| 669 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
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| 670 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
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| 671 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
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| 672 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
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| 673 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
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| 674 | } |
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| 675 | |
---|
| 676 | ///-------------------------------------------------------------- |
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| 677 | |
---|
[335] | 678 | } // namespace xios |
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