[219] | 1 | #include "domain.hpp" |
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| 2 | |
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[352] | 3 | #include "attribute_template.hpp" |
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| 4 | #include "object_template.hpp" |
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| 5 | #include "group_template.hpp" |
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[219] | 6 | |
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[591] | 7 | #include "xios_spl.hpp" |
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[300] | 8 | #include "event_client.hpp" |
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| 9 | #include "event_server.hpp" |
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| 10 | #include "buffer_in.hpp" |
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[352] | 11 | #include "message.hpp" |
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| 12 | #include "type.hpp" |
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| 13 | #include "context.hpp" |
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| 14 | #include "context_client.hpp" |
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[676] | 15 | #include "context_server.hpp" |
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[369] | 16 | #include "array_new.hpp" |
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[676] | 17 | #include "distribution_client.hpp" |
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[553] | 18 | #include "server_distribution_description.hpp" |
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[569] | 19 | #include "client_server_mapping_distributed.hpp" |
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[274] | 20 | |
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[676] | 21 | #include <algorithm> |
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| 22 | |
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[335] | 23 | namespace xios { |
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[509] | 24 | |
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[1158] | 25 | /// ////////////////////// Définitions ////////////////////// /// |
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[219] | 26 | |
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| 27 | CDomain::CDomain(void) |
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| 28 | : CObjectTemplate<CDomain>(), CDomainAttributes() |
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[1236] | 29 | , isChecked(false), relFiles(), isClientChecked(false), nbSenders(), indSrv_(), connectedServerRank_() |
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[1143] | 30 | , hasBounds(false), hasArea(false), isCompressible_(false), isUnstructed_(false) |
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[665] | 31 | , isClientAfterTransformationChecked(false), hasLonLat(false) |
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[1553] | 32 | , isRedistributed_(false), hasPole(false) |
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[1099] | 33 | , lonvalue(), latvalue(), bounds_lonvalue(), bounds_latvalue() |
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[1129] | 34 | , globalLocalIndexMap_(), computedWrittenIndex_(false) |
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[1578] | 35 | , clients(), hasLatInReadFile_(false), hasBoundsLatInReadFile_(false) |
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| 36 | , hasLonInReadFile_(false), hasBoundsLonInReadFile_(false) |
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[878] | 37 | { |
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[924] | 38 | } |
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[219] | 39 | |
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| 40 | CDomain::CDomain(const StdString & id) |
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| 41 | : CObjectTemplate<CDomain>(id), CDomainAttributes() |
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[1236] | 42 | , isChecked(false), relFiles(), isClientChecked(false), nbSenders(), indSrv_(), connectedServerRank_() |
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[1143] | 43 | , hasBounds(false), hasArea(false), isCompressible_(false), isUnstructed_(false) |
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[665] | 44 | , isClientAfterTransformationChecked(false), hasLonLat(false) |
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[1553] | 45 | , isRedistributed_(false), hasPole(false) |
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[1099] | 46 | , lonvalue(), latvalue(), bounds_lonvalue(), bounds_latvalue() |
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[1129] | 47 | , globalLocalIndexMap_(), computedWrittenIndex_(false) |
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[1578] | 48 | , clients(), hasLatInReadFile_(false), hasBoundsLatInReadFile_(false) |
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| 49 | , hasLonInReadFile_(false), hasBoundsLonInReadFile_(false) |
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[878] | 50 | { |
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[1337] | 51 | } |
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[219] | 52 | |
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| 53 | CDomain::~CDomain(void) |
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[509] | 54 | { |
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[219] | 55 | } |
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| 56 | |
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| 57 | ///--------------------------------------------------------------- |
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| 58 | |
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[924] | 59 | void CDomain::assignMesh(const StdString meshName, const int nvertex) |
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[1622] | 60 | TRY |
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[881] | 61 | { |
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[924] | 62 | mesh = CMesh::getMesh(meshName, nvertex); |
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[881] | 63 | } |
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[1622] | 64 | CATCH_DUMP_ATTR |
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[881] | 65 | |
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[622] | 66 | CDomain* CDomain::createDomain() |
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[1622] | 67 | TRY |
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[622] | 68 | { |
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| 69 | CDomain* domain = CDomainGroup::get("domain_definition")->createChild(); |
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| 70 | return domain; |
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| 71 | } |
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[1622] | 72 | CATCH |
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[622] | 73 | |
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[836] | 74 | std::map<StdString, ETranformationType> CDomain::transformationMapList_ = std::map<StdString, ETranformationType>(); |
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| 75 | bool CDomain::_dummyTransformationMapList = CDomain::initializeTransformationMap(CDomain::transformationMapList_); |
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| 76 | |
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| 77 | bool CDomain::initializeTransformationMap(std::map<StdString, ETranformationType>& m) |
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[1622] | 78 | TRY |
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[836] | 79 | { |
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| 80 | m["zoom_domain"] = TRANS_ZOOM_DOMAIN; |
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| 81 | m["interpolate_domain"] = TRANS_INTERPOLATE_DOMAIN; |
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| 82 | m["generate_rectilinear_domain"] = TRANS_GENERATE_RECTILINEAR_DOMAIN; |
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[934] | 83 | m["compute_connectivity_domain"] = TRANS_COMPUTE_CONNECTIVITY_DOMAIN; |
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[935] | 84 | m["expand_domain"] = TRANS_EXPAND_DOMAIN; |
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[1457] | 85 | m["reorder_domain"] = TRANS_REORDER_DOMAIN; |
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[1549] | 86 | m["extract_domain"] = TRANS_EXTRACT_DOMAIN; |
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[1852] | 87 | |
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| 88 | return true ; |
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[836] | 89 | } |
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[1622] | 90 | CATCH |
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[836] | 91 | |
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[1158] | 92 | const std::set<StdString> & CDomain::getRelFiles(void) const |
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[1622] | 93 | TRY |
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[1158] | 94 | { |
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| 95 | return (this->relFiles); |
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| 96 | } |
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[1622] | 97 | CATCH |
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[1158] | 98 | |
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[676] | 99 | /*! |
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| 100 | Returns the number of indexes written by each server. |
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| 101 | \return the number of indexes written by each server |
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| 102 | */ |
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[1639] | 103 | int CDomain::getNumberWrittenIndexes(MPI_Comm writtenCom) |
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[1622] | 104 | TRY |
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[676] | 105 | { |
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[1249] | 106 | int writtenSize; |
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[1639] | 107 | MPI_Comm_size(writtenCom, &writtenSize); |
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[1249] | 108 | return numberWrittenIndexes_[writtenSize]; |
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[676] | 109 | } |
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[1622] | 110 | CATCH_DUMP_ATTR |
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[676] | 111 | |
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| 112 | /*! |
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| 113 | Returns the total number of indexes written by the servers. |
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| 114 | \return the total number of indexes written by the servers |
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| 115 | */ |
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[1639] | 116 | int CDomain::getTotalNumberWrittenIndexes(MPI_Comm writtenCom) |
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[1622] | 117 | TRY |
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[676] | 118 | { |
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[1249] | 119 | int writtenSize; |
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[1639] | 120 | MPI_Comm_size(writtenCom, &writtenSize); |
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[1249] | 121 | return totalNumberWrittenIndexes_[writtenSize]; |
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[676] | 122 | } |
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[1622] | 123 | CATCH_DUMP_ATTR |
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[676] | 124 | |
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| 125 | /*! |
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| 126 | Returns the offset of indexes written by each server. |
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| 127 | \return the offset of indexes written by each server |
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| 128 | */ |
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[1639] | 129 | int CDomain::getOffsetWrittenIndexes(MPI_Comm writtenCom) |
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[1622] | 130 | TRY |
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[676] | 131 | { |
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[1249] | 132 | int writtenSize; |
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[1639] | 133 | MPI_Comm_size(writtenCom, &writtenSize); |
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[1249] | 134 | return offsetWrittenIndexes_[writtenSize]; |
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[676] | 135 | } |
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[1622] | 136 | CATCH_DUMP_ATTR |
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[676] | 137 | |
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[1639] | 138 | CArray<int, 1>& CDomain::getCompressedIndexToWriteOnServer(MPI_Comm writtenCom) |
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[1622] | 139 | TRY |
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[1249] | 140 | { |
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| 141 | int writtenSize; |
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[1639] | 142 | MPI_Comm_size(writtenCom, &writtenSize); |
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[1249] | 143 | return compressedIndexToWriteOnServer[writtenSize]; |
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| 144 | } |
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[1622] | 145 | CATCH_DUMP_ATTR |
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[1249] | 146 | |
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[676] | 147 | //---------------------------------------------------------------- |
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| 148 | |
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[731] | 149 | /*! |
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| 150 | * Compute the minimum buffer size required to send the attributes to the server(s). |
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| 151 | * |
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| 152 | * \return A map associating the server rank with its minimum buffer size. |
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| 153 | */ |
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[1330] | 154 | std::map<int, StdSize> CDomain::getAttributesBufferSize(CContextClient* client, bool bufferForWriting /*= false*/) |
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[1622] | 155 | TRY |
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[731] | 156 | { |
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| 157 | |
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[1330] | 158 | std::map<int, StdSize> attributesSizes = getMinimumBufferSizeForAttributes(client); |
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[731] | 159 | |
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| 160 | if (client->isServerLeader()) |
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| 161 | { |
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[1025] | 162 | // size estimation for sendDistributionAttribut |
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[731] | 163 | size_t size = 11 * sizeof(size_t); |
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| 164 | |
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| 165 | const std::list<int>& ranks = client->getRanksServerLeader(); |
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| 166 | for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank) |
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| 167 | { |
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| 168 | if (size > attributesSizes[*itRank]) |
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| 169 | attributesSizes[*itRank] = size; |
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| 170 | } |
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| 171 | } |
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| 172 | |
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[1542] | 173 | std::unordered_map<int, vector<size_t> >::const_iterator itIndexEnd = indSrv_[client->serverSize].end(); |
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[1236] | 174 | // std::map<int, std::vector<int> >::const_iterator itWrittenIndexEnd = indWrittenSrv_.end(); |
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[1337] | 175 | for (size_t k = 0; k < connectedServerRank_[client->serverSize].size(); ++k) |
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[731] | 176 | { |
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[1337] | 177 | int rank = connectedServerRank_[client->serverSize][k]; |
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[1542] | 178 | std::unordered_map<int, std::vector<size_t> >::const_iterator it = indSrv_[client->serverSize].find(rank); |
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[764] | 179 | size_t idxCount = (it != itIndexEnd) ? it->second.size() : 0; |
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| 180 | |
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[731] | 181 | // size estimation for sendIndex (and sendArea which is always smaller or equal) |
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[764] | 182 | size_t sizeIndexEvent = 2 * sizeof(size_t) + 2 * CArray<int,1>::size(idxCount); |
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[731] | 183 | |
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| 184 | // size estimation for sendLonLat |
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[764] | 185 | size_t sizeLonLatEvent = CArray<double,1>::size(idxCount); |
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[731] | 186 | if (hasBounds) |
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[764] | 187 | sizeLonLatEvent += CArray<double,2>::size(nvertex * idxCount); |
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[731] | 188 | |
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| 189 | size_t size = CEventClient::headerSize + getId().size() + sizeof(size_t) + std::max(sizeIndexEvent, sizeLonLatEvent); |
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[764] | 190 | if (size > attributesSizes[rank]) |
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| 191 | attributesSizes[rank] = size; |
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[731] | 192 | } |
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| 193 | |
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| 194 | return attributesSizes; |
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| 195 | } |
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[1622] | 196 | CATCH_DUMP_ATTR |
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[731] | 197 | |
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| 198 | //---------------------------------------------------------------- |
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| 199 | |
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[219] | 200 | bool CDomain::isEmpty(void) const |
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[1622] | 201 | TRY |
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[219] | 202 | { |
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[1553] | 203 | return ((this->i_index.isEmpty()) || (0 == this->i_index.numElements())); |
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[219] | 204 | } |
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[1622] | 205 | CATCH |
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[219] | 206 | |
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| 207 | //---------------------------------------------------------------- |
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[676] | 208 | |
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[219] | 209 | bool CDomain::IsWritten(const StdString & filename) const |
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[1622] | 210 | TRY |
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[219] | 211 | { |
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| 212 | return (this->relFiles.find(filename) != this->relFiles.end()); |
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| 213 | } |
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[1622] | 214 | CATCH |
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[219] | 215 | |
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[676] | 216 | bool CDomain::isWrittenCompressed(const StdString& filename) const |
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[1622] | 217 | TRY |
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[676] | 218 | { |
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| 219 | return (this->relFilesCompressed.find(filename) != this->relFilesCompressed.end()); |
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| 220 | } |
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[1622] | 221 | CATCH |
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[676] | 222 | |
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[219] | 223 | //---------------------------------------------------------------- |
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[676] | 224 | |
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[594] | 225 | bool CDomain::isDistributed(void) const |
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[1622] | 226 | TRY |
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[594] | 227 | { |
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[1158] | 228 | bool distributed = !((!ni.isEmpty() && (ni == ni_glo) && !nj.isEmpty() && (nj == nj_glo)) || |
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[1143] | 229 | (!i_index.isEmpty() && i_index.numElements() == ni_glo*nj_glo)); |
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[1672] | 230 | bool distributed_glo ; |
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[1158] | 231 | distributed |= (1 == CContext::getCurrent()->client->clientSize); |
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| 232 | |
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| 233 | return distributed; |
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[594] | 234 | } |
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[1622] | 235 | CATCH |
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[594] | 236 | |
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| 237 | //---------------------------------------------------------------- |
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[676] | 238 | |
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| 239 | /*! |
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| 240 | * Test whether the data defined on the domain can be outputted in a compressed way. |
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[679] | 241 | * |
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[676] | 242 | * \return true if and only if a mask was defined for this domain |
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| 243 | */ |
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| 244 | bool CDomain::isCompressible(void) const |
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[1622] | 245 | TRY |
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[676] | 246 | { |
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| 247 | return isCompressible_; |
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| 248 | } |
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[1622] | 249 | CATCH |
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[676] | 250 | |
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[219] | 251 | void CDomain::addRelFile(const StdString & filename) |
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[1622] | 252 | TRY |
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[219] | 253 | { |
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| 254 | this->relFiles.insert(filename); |
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| 255 | } |
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[1622] | 256 | CATCH_DUMP_ATTR |
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[895] | 257 | |
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[676] | 258 | void CDomain::addRelFileCompressed(const StdString& filename) |
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[1622] | 259 | TRY |
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[676] | 260 | { |
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| 261 | this->relFilesCompressed.insert(filename); |
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| 262 | } |
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[1622] | 263 | CATCH_DUMP_ATTR |
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[219] | 264 | |
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| 265 | StdString CDomain::GetName(void) { return (StdString("domain")); } |
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| 266 | StdString CDomain::GetDefName(void){ return (CDomain::GetName()); } |
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| 267 | ENodeType CDomain::GetType(void) { return (eDomain); } |
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| 268 | |
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| 269 | //---------------------------------------------------------------- |
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| 270 | |
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[687] | 271 | /*! |
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[1158] | 272 | Verify if all distribution information of a domain are available |
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| 273 | This checking verifies the definition of distribution attributes (ni, nj, ibegin, jbegin) |
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| 274 | */ |
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| 275 | bool CDomain::distributionAttributesHaveValue() const |
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[1622] | 276 | TRY |
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[1158] | 277 | { |
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| 278 | bool hasValues = true; |
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| 279 | |
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| 280 | if (ni.isEmpty() && ibegin.isEmpty() && i_index.isEmpty()) |
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| 281 | { |
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| 282 | hasValues = false; |
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| 283 | return hasValues; |
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| 284 | } |
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| 285 | |
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| 286 | return hasValues; |
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| 287 | } |
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[1622] | 288 | CATCH |
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[1158] | 289 | |
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| 290 | /*! |
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[1419] | 291 | Redistribute RECTILINEAR or CURVILINEAR domain with a number of local domains. |
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[687] | 292 | All attributes ni,nj,ibegin,jbegin (if defined) will be rewritten |
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| 293 | The optional attributes lonvalue, latvalue will be added. Because this function only serves (for now) |
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| 294 | for interpolation from unstructured domain to rectilinear one, range of latvalue is 0-360 and lonvalue is -90 - +90 |
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| 295 | \param [in] nbLocalDomain number of local domain on the domain destination |
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| 296 | */ |
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| 297 | void CDomain::redistribute(int nbLocalDomain) |
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[1622] | 298 | TRY |
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[687] | 299 | { |
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[715] | 300 | if (this->isRedistributed_) return; |
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[727] | 301 | |
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[783] | 302 | this->isRedistributed_ = true; |
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| 303 | CContext* context = CContext::getCurrent(); |
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[1054] | 304 | // For now the assumption is that secondary server pools consist of the same number of procs. |
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| 305 | // CHANGE the line below if the assumption changes. |
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| 306 | CContextClient* client = (0 != context->clientPrimServer.size()) ? context->clientPrimServer[0] : context->client; |
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[783] | 307 | int rankClient = client->clientRank; |
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| 308 | int rankOnDomain = rankClient%nbLocalDomain; |
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[687] | 309 | |
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[783] | 310 | if (ni_glo.isEmpty() || ni_glo <= 0 ) |
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| 311 | { |
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| 312 | ERROR("CDomain::redistribute(int nbLocalDomain)", |
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| 313 | << "[ Id = " << this->getId() << " ] " |
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| 314 | << "The global domain is badly defined," |
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| 315 | << " check the \'ni_glo\' value !") |
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| 316 | } |
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[687] | 317 | |
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[783] | 318 | if (nj_glo.isEmpty() || nj_glo <= 0 ) |
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| 319 | { |
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| 320 | ERROR("CDomain::redistribute(int nbLocalDomain)", |
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| 321 | << "[ Id = " << this->getId() << " ] " |
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| 322 | << "The global domain is badly defined," |
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| 323 | << " check the \'nj_glo\' value !") |
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| 324 | } |
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[687] | 325 | |
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[783] | 326 | if ((type_attr::rectilinear == type) || (type_attr::curvilinear == type)) |
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| 327 | { |
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[687] | 328 | int globalDomainSize = ni_glo * nj_glo; |
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| 329 | if (globalDomainSize <= nbLocalDomain) |
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| 330 | { |
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| 331 | for (int idx = 0; idx < nbLocalDomain; ++idx) |
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| 332 | { |
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| 333 | if (rankOnDomain < globalDomainSize) |
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| 334 | { |
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| 335 | int iIdx = rankOnDomain % ni_glo; |
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| 336 | int jIdx = rankOnDomain / ni_glo; |
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| 337 | ibegin.setValue(iIdx); jbegin.setValue(jIdx); |
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| 338 | ni.setValue(1); nj.setValue(1); |
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| 339 | } |
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| 340 | else |
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| 341 | { |
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| 342 | ibegin.setValue(0); jbegin.setValue(0); |
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| 343 | ni.setValue(0); nj.setValue(0); |
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| 344 | } |
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| 345 | } |
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| 346 | } |
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| 347 | else |
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| 348 | { |
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[688] | 349 | float njGlo = nj_glo.getValue(); |
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| 350 | float niGlo = ni_glo.getValue(); |
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| 351 | int nbProcOnX, nbProcOnY, range; |
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| 352 | |
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[687] | 353 | // Compute (approximately) number of segment on x and y axis |
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[688] | 354 | float yOverXRatio = njGlo/niGlo; |
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| 355 | |
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[687] | 356 | nbProcOnX = std::ceil(std::sqrt(nbLocalDomain/yOverXRatio)); |
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| 357 | nbProcOnY = std::ceil(((float)nbLocalDomain)/nbProcOnX); |
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| 358 | |
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| 359 | // Simple distribution: Sweep from top to bottom, left to right |
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| 360 | // Calculate local begin on x |
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| 361 | std::vector<int> ibeginVec(nbProcOnX,0), jbeginVec(nbProcOnY,0); |
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| 362 | std::vector<int> niVec(nbProcOnX), njVec(nbProcOnY); |
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| 363 | for (int i = 1; i < nbProcOnX; ++i) |
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| 364 | { |
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| 365 | range = ni_glo / nbProcOnX; |
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| 366 | if (i < (ni_glo%nbProcOnX)) ++range; |
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| 367 | niVec[i-1] = range; |
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| 368 | ibeginVec[i] = ibeginVec[i-1] + niVec[i-1]; |
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| 369 | } |
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| 370 | niVec[nbProcOnX-1] = ni_glo - ibeginVec[nbProcOnX-1]; |
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| 371 | |
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| 372 | // Calculate local begin on y |
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| 373 | for (int j = 1; j < nbProcOnY; ++j) |
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| 374 | { |
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| 375 | range = nj_glo / nbProcOnY; |
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| 376 | if (j < (nj_glo%nbProcOnY)) ++range; |
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| 377 | njVec[j-1] = range; |
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| 378 | jbeginVec[j] = jbeginVec[j-1] + njVec[j-1]; |
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| 379 | } |
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| 380 | njVec[nbProcOnY-1] = nj_glo - jbeginVec[nbProcOnY-1]; |
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| 381 | |
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| 382 | // Now assign value to ni, ibegin, nj, jbegin |
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| 383 | int iIdx = rankOnDomain % nbProcOnX; |
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| 384 | int jIdx = rankOnDomain / nbProcOnX; |
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| 385 | |
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| 386 | if (rankOnDomain != (nbLocalDomain-1)) |
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| 387 | { |
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| 388 | ibegin.setValue(ibeginVec[iIdx]); |
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| 389 | jbegin.setValue(jbeginVec[jIdx]); |
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| 390 | nj.setValue(njVec[jIdx]); |
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| 391 | ni.setValue(niVec[iIdx]); |
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| 392 | } |
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| 393 | else // just merge all the remaining rectangle into the last one |
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| 394 | { |
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| 395 | ibegin.setValue(ibeginVec[iIdx]); |
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| 396 | jbegin.setValue(jbeginVec[jIdx]); |
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| 397 | nj.setValue(njVec[jIdx]); |
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| 398 | ni.setValue(ni_glo - ibeginVec[iIdx]); |
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| 399 | } |
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[1158] | 400 | } |
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[687] | 401 | } |
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[783] | 402 | else // unstructured domain |
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| 403 | { |
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[785] | 404 | if (this->i_index.isEmpty()) |
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| 405 | { |
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| 406 | int globalDomainSize = ni_glo * nj_glo; |
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| 407 | if (globalDomainSize <= nbLocalDomain) |
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[783] | 408 | { |
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[785] | 409 | for (int idx = 0; idx < nbLocalDomain; ++idx) |
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[783] | 410 | { |
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[785] | 411 | if (rankOnDomain < globalDomainSize) |
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| 412 | { |
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| 413 | int iIdx = rankOnDomain % ni_glo; |
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| 414 | int jIdx = rankOnDomain / ni_glo; |
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| 415 | ibegin.setValue(iIdx); jbegin.setValue(jIdx); |
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| 416 | ni.setValue(1); nj.setValue(1); |
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| 417 | } |
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| 418 | else |
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| 419 | { |
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| 420 | ibegin.setValue(0); jbegin.setValue(0); |
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| 421 | ni.setValue(0); nj.setValue(0); |
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| 422 | } |
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[783] | 423 | } |
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[785] | 424 | } |
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| 425 | else |
---|
| 426 | { |
---|
| 427 | float njGlo = nj_glo.getValue(); |
---|
| 428 | float niGlo = ni_glo.getValue(); |
---|
| 429 | std::vector<int> ibeginVec(nbLocalDomain,0); |
---|
| 430 | std::vector<int> niVec(nbLocalDomain); |
---|
| 431 | for (int i = 1; i < nbLocalDomain; ++i) |
---|
[783] | 432 | { |
---|
[785] | 433 | int range = ni_glo / nbLocalDomain; |
---|
| 434 | if (i < (ni_glo%nbLocalDomain)) ++range; |
---|
| 435 | niVec[i-1] = range; |
---|
| 436 | ibeginVec[i] = ibeginVec[i-1] + niVec[i-1]; |
---|
[783] | 437 | } |
---|
[785] | 438 | niVec[nbLocalDomain-1] = ni_glo - ibeginVec[nbLocalDomain-1]; |
---|
| 439 | |
---|
| 440 | int iIdx = rankOnDomain % nbLocalDomain; |
---|
| 441 | ibegin.setValue(ibeginVec[iIdx]); |
---|
| 442 | jbegin.setValue(0); |
---|
| 443 | ni.setValue(niVec[iIdx]); |
---|
| 444 | nj.setValue(1); |
---|
[783] | 445 | } |
---|
[1158] | 446 | |
---|
| 447 | i_index.resize(ni); |
---|
| 448 | for(int idx = 0; idx < ni; ++idx) i_index(idx)=ibegin+idx; |
---|
[783] | 449 | } |
---|
| 450 | else |
---|
| 451 | { |
---|
[785] | 452 | ibegin.setValue(this->i_index(0)); |
---|
[783] | 453 | jbegin.setValue(0); |
---|
[785] | 454 | ni.setValue(this->i_index.numElements()); |
---|
[783] | 455 | nj.setValue(1); |
---|
| 456 | } |
---|
| 457 | } |
---|
[785] | 458 | |
---|
| 459 | checkDomain(); |
---|
[687] | 460 | } |
---|
[1622] | 461 | CATCH_DUMP_ATTR |
---|
[687] | 462 | |
---|
| 463 | /*! |
---|
[1158] | 464 | Fill in longitude and latitude whose values are read from file |
---|
| 465 | */ |
---|
| 466 | void CDomain::fillInLonLat() |
---|
[1622] | 467 | TRY |
---|
[1158] | 468 | { |
---|
| 469 | switch (type) |
---|
| 470 | { |
---|
| 471 | case type_attr::rectilinear: |
---|
| 472 | fillInRectilinearLonLat(); |
---|
| 473 | break; |
---|
| 474 | case type_attr::curvilinear: |
---|
| 475 | fillInCurvilinearLonLat(); |
---|
| 476 | break; |
---|
| 477 | case type_attr::unstructured: |
---|
| 478 | fillInUnstructuredLonLat(); |
---|
| 479 | break; |
---|
| 480 | |
---|
| 481 | default: |
---|
| 482 | break; |
---|
| 483 | } |
---|
[1305] | 484 | completeLonLatClient() ; |
---|
[1158] | 485 | } |
---|
[1622] | 486 | CATCH_DUMP_ATTR |
---|
[1158] | 487 | |
---|
| 488 | /*! |
---|
[687] | 489 | Fill in the values for lonvalue_1d and latvalue_1d of rectilinear domain |
---|
| 490 | Range of longitude value from 0 - 360 |
---|
| 491 | Range of latitude value from -90 - +90 |
---|
| 492 | */ |
---|
| 493 | void CDomain::fillInRectilinearLonLat() |
---|
[1622] | 494 | TRY |
---|
[687] | 495 | { |
---|
[1565] | 496 | if (!lonvalue_rectilinear_read_from_file.isEmpty() && lonvalue_2d.isEmpty() && lonvalue_1d.isEmpty()) |
---|
[775] | 497 | { |
---|
| 498 | lonvalue_1d.resize(ni); |
---|
| 499 | for (int idx = 0; idx < ni; ++idx) |
---|
| 500 | lonvalue_1d(idx) = lonvalue_rectilinear_read_from_file(idx+ibegin); |
---|
| 501 | lon_start.setValue(lonvalue_rectilinear_read_from_file(0)); |
---|
| 502 | lon_end.setValue(lonvalue_rectilinear_read_from_file(ni_glo-1)); |
---|
| 503 | } |
---|
[1578] | 504 | else if (!hasLonInReadFile_) |
---|
[775] | 505 | { |
---|
| 506 | if (!lonvalue_2d.isEmpty()) lonvalue_2d.free(); |
---|
| 507 | lonvalue_1d.resize(ni); |
---|
| 508 | double lonRange = lon_end - lon_start; |
---|
| 509 | double lonStep = (1 == ni_glo.getValue()) ? lonRange : lonRange/double(ni_glo.getValue()-1); |
---|
[688] | 510 | |
---|
[775] | 511 | // Assign lon value |
---|
| 512 | for (int i = 0; i < ni; ++i) |
---|
| 513 | { |
---|
| 514 | if (0 == (ibegin + i)) |
---|
| 515 | { |
---|
| 516 | lonvalue_1d(i) = lon_start; |
---|
| 517 | } |
---|
| 518 | else if (ni_glo == (ibegin + i + 1)) |
---|
| 519 | { |
---|
| 520 | lonvalue_1d(i) = lon_end; |
---|
| 521 | } |
---|
| 522 | else |
---|
| 523 | { |
---|
| 524 | lonvalue_1d(i) = (ibegin + i) * lonStep + lon_start; |
---|
| 525 | } |
---|
| 526 | } |
---|
| 527 | } |
---|
[687] | 528 | |
---|
[727] | 529 | |
---|
[1565] | 530 | if (!latvalue_rectilinear_read_from_file.isEmpty() && latvalue_2d.isEmpty() && latvalue_1d.isEmpty()) |
---|
[687] | 531 | { |
---|
[775] | 532 | latvalue_1d.resize(nj); |
---|
| 533 | for (int idx = 0; idx < nj; ++idx) |
---|
| 534 | latvalue_1d(idx) = latvalue_rectilinear_read_from_file(idx+jbegin); |
---|
| 535 | lat_start.setValue(latvalue_rectilinear_read_from_file(0)); |
---|
| 536 | lat_end.setValue(latvalue_rectilinear_read_from_file(nj_glo-1)); |
---|
[687] | 537 | } |
---|
[1578] | 538 | else if (!hasLatInReadFile_) |
---|
[775] | 539 | { |
---|
| 540 | if (!latvalue_2d.isEmpty()) latvalue_1d.free(); |
---|
| 541 | latvalue_1d.resize(nj); |
---|
[687] | 542 | |
---|
[775] | 543 | double latRange = lat_end - lat_start; |
---|
| 544 | double latStep = (1 == nj_glo.getValue()) ? latRange : latRange/double(nj_glo.getValue()-1); |
---|
| 545 | |
---|
| 546 | for (int j = 0; j < nj; ++j) |
---|
[727] | 547 | { |
---|
[775] | 548 | if (0 == (jbegin + j)) |
---|
| 549 | { |
---|
| 550 | latvalue_1d(j) = lat_start; |
---|
| 551 | } |
---|
| 552 | else if (nj_glo == (jbegin + j + 1)) |
---|
| 553 | { |
---|
| 554 | latvalue_1d(j) = lat_end; |
---|
| 555 | } |
---|
| 556 | else |
---|
| 557 | { |
---|
| 558 | latvalue_1d(j) = (jbegin + j) * latStep + lat_start; |
---|
| 559 | } |
---|
[727] | 560 | } |
---|
[687] | 561 | } |
---|
| 562 | } |
---|
[1622] | 563 | CATCH_DUMP_ATTR |
---|
[687] | 564 | |
---|
[1158] | 565 | /* |
---|
[1565] | 566 | Fill in 2D longitude and latitude of curvilinear domain read from a file. |
---|
| 567 | If there are already longitude and latitude defined by model. We just ignore read value. |
---|
[1158] | 568 | */ |
---|
| 569 | void CDomain::fillInCurvilinearLonLat() |
---|
[1622] | 570 | TRY |
---|
[1158] | 571 | { |
---|
[1565] | 572 | if (!lonvalue_curvilinear_read_from_file.isEmpty() && lonvalue_2d.isEmpty() && lonvalue_1d.isEmpty()) |
---|
[1158] | 573 | { |
---|
| 574 | lonvalue_2d.resize(ni,nj); |
---|
| 575 | for (int jdx = 0; jdx < nj; ++jdx) |
---|
| 576 | for (int idx = 0; idx < ni; ++idx) |
---|
[1419] | 577 | lonvalue_2d(idx,jdx) = lonvalue_curvilinear_read_from_file(idx, jdx); |
---|
[809] | 578 | |
---|
[1158] | 579 | lonvalue_curvilinear_read_from_file.free(); |
---|
| 580 | } |
---|
[809] | 581 | |
---|
[1565] | 582 | if (!latvalue_curvilinear_read_from_file.isEmpty() && latvalue_2d.isEmpty() && latvalue_1d.isEmpty()) |
---|
[1158] | 583 | { |
---|
| 584 | latvalue_2d.resize(ni,nj); |
---|
| 585 | for (int jdx = 0; jdx < nj; ++jdx) |
---|
| 586 | for (int idx = 0; idx < ni; ++idx) |
---|
[1419] | 587 | latvalue_2d(idx,jdx) = latvalue_curvilinear_read_from_file(idx, jdx); |
---|
[1158] | 588 | |
---|
| 589 | latvalue_curvilinear_read_from_file.free(); |
---|
| 590 | } |
---|
| 591 | |
---|
[1565] | 592 | if (!bounds_lonvalue_curvilinear_read_from_file.isEmpty() && bounds_lon_2d.isEmpty() && bounds_lon_1d.isEmpty()) |
---|
[1158] | 593 | { |
---|
| 594 | bounds_lon_2d.resize(nvertex,ni,nj); |
---|
| 595 | for (int jdx = 0; jdx < nj; ++jdx) |
---|
| 596 | for (int idx = 0; idx < ni; ++idx) |
---|
| 597 | for (int ndx = 0; ndx < nvertex; ++ndx) |
---|
[1419] | 598 | bounds_lon_2d(ndx,idx,jdx) = bounds_lonvalue_curvilinear_read_from_file(ndx,idx, jdx); |
---|
[1158] | 599 | |
---|
| 600 | bounds_lonvalue_curvilinear_read_from_file.free(); |
---|
| 601 | } |
---|
| 602 | |
---|
[1565] | 603 | if (!bounds_latvalue_curvilinear_read_from_file.isEmpty() && bounds_lat_2d.isEmpty() && bounds_lat_1d.isEmpty()) |
---|
[1158] | 604 | { |
---|
| 605 | bounds_lat_2d.resize(nvertex,ni,nj); |
---|
| 606 | for (int jdx = 0; jdx < nj; ++jdx) |
---|
| 607 | for (int idx = 0; idx < ni; ++idx) |
---|
| 608 | for (int ndx = 0; ndx < nvertex; ++ndx) |
---|
[1419] | 609 | bounds_lat_2d(ndx,idx,jdx) = bounds_latvalue_curvilinear_read_from_file(ndx,idx, jdx); |
---|
[1158] | 610 | |
---|
| 611 | bounds_latvalue_curvilinear_read_from_file.free(); |
---|
| 612 | } |
---|
| 613 | } |
---|
[1622] | 614 | CATCH_DUMP_ATTR |
---|
[1158] | 615 | |
---|
| 616 | /* |
---|
| 617 | Fill in longitude and latitude of unstructured domain read from a file |
---|
| 618 | If there are already longitude and latitude defined by model. We just igonore reading value. |
---|
| 619 | */ |
---|
| 620 | void CDomain::fillInUnstructuredLonLat() |
---|
[1622] | 621 | TRY |
---|
[1158] | 622 | { |
---|
| 623 | if (i_index.isEmpty()) |
---|
| 624 | { |
---|
| 625 | i_index.resize(ni); |
---|
[1413] | 626 | for(int idx = 0; idx < ni; ++idx) i_index(idx)=ibegin+idx; |
---|
[1158] | 627 | } |
---|
| 628 | |
---|
| 629 | if (!lonvalue_unstructured_read_from_file.isEmpty() && lonvalue_1d.isEmpty()) |
---|
| 630 | { |
---|
| 631 | lonvalue_1d.resize(ni); |
---|
| 632 | for (int idx = 0; idx < ni; ++idx) |
---|
[1419] | 633 | lonvalue_1d(idx) = lonvalue_unstructured_read_from_file(idx); |
---|
[1158] | 634 | |
---|
| 635 | // We dont need these values anymore, so just delete them |
---|
| 636 | lonvalue_unstructured_read_from_file.free(); |
---|
| 637 | } |
---|
| 638 | |
---|
| 639 | if (!latvalue_unstructured_read_from_file.isEmpty() && latvalue_1d.isEmpty()) |
---|
| 640 | { |
---|
| 641 | latvalue_1d.resize(ni); |
---|
| 642 | for (int idx = 0; idx < ni; ++idx) |
---|
[1419] | 643 | latvalue_1d(idx) = latvalue_unstructured_read_from_file(idx); |
---|
[1158] | 644 | |
---|
| 645 | // We dont need these values anymore, so just delete them |
---|
| 646 | latvalue_unstructured_read_from_file.free(); |
---|
| 647 | } |
---|
| 648 | |
---|
| 649 | if (!bounds_lonvalue_unstructured_read_from_file.isEmpty() && bounds_lon_1d.isEmpty()) |
---|
| 650 | { |
---|
| 651 | int nbVertex = nvertex; |
---|
| 652 | bounds_lon_1d.resize(nbVertex,ni); |
---|
| 653 | for (int idx = 0; idx < ni; ++idx) |
---|
| 654 | for (int jdx = 0; jdx < nbVertex; ++jdx) |
---|
[1419] | 655 | bounds_lon_1d(jdx,idx) = bounds_lonvalue_unstructured_read_from_file(jdx, idx); |
---|
[1158] | 656 | |
---|
| 657 | // We dont need these values anymore, so just delete them |
---|
[1427] | 658 | bounds_lonvalue_unstructured_read_from_file.free(); |
---|
[1158] | 659 | } |
---|
| 660 | |
---|
| 661 | if (!bounds_latvalue_unstructured_read_from_file.isEmpty() && bounds_lat_1d.isEmpty()) |
---|
| 662 | { |
---|
| 663 | int nbVertex = nvertex; |
---|
| 664 | bounds_lat_1d.resize(nbVertex,ni); |
---|
| 665 | for (int idx = 0; idx < ni; ++idx) |
---|
| 666 | for (int jdx = 0; jdx < nbVertex; ++jdx) |
---|
[1419] | 667 | bounds_lat_1d(jdx,idx) = bounds_latvalue_unstructured_read_from_file(jdx, idx); |
---|
[1158] | 668 | |
---|
| 669 | // We dont need these values anymore, so just delete them |
---|
[1427] | 670 | bounds_latvalue_unstructured_read_from_file.free(); |
---|
[1158] | 671 | } |
---|
| 672 | } |
---|
[1622] | 673 | CATCH_DUMP_ATTR |
---|
[1158] | 674 | |
---|
| 675 | /* |
---|
| 676 | Get global longitude and latitude of rectilinear domain. |
---|
| 677 | */ |
---|
[809] | 678 | void CDomain::AllgatherRectilinearLonLat(CArray<double,1>& lon, CArray<double,1>& lat, CArray<double,1>& lon_g, CArray<double,1>& lat_g) |
---|
[1622] | 679 | TRY |
---|
[688] | 680 | { |
---|
[1337] | 681 | CContext* context = CContext::getCurrent(); |
---|
[1054] | 682 | // For now the assumption is that secondary server pools consist of the same number of procs. |
---|
| 683 | // CHANGE the line below if the assumption changes. |
---|
| 684 | CContextClient* client = (0 != context->clientPrimServer.size()) ? context->clientPrimServer[0] : context->client; |
---|
[1337] | 685 | lon_g.resize(ni_glo) ; |
---|
| 686 | lat_g.resize(nj_glo) ; |
---|
[815] | 687 | |
---|
| 688 | |
---|
[1337] | 689 | int* ibegin_g = new int[client->clientSize] ; |
---|
| 690 | int* jbegin_g = new int[client->clientSize] ; |
---|
| 691 | int* ni_g = new int[client->clientSize] ; |
---|
| 692 | int* nj_g = new int[client->clientSize] ; |
---|
| 693 | int v ; |
---|
| 694 | v=ibegin ; |
---|
[1639] | 695 | MPI_Allgather(&v,1,MPI_INT,ibegin_g,1,MPI_INT,client->intraComm) ; |
---|
[1337] | 696 | v=jbegin ; |
---|
[1639] | 697 | MPI_Allgather(&v,1,MPI_INT,jbegin_g,1,MPI_INT,client->intraComm) ; |
---|
[1337] | 698 | v=ni ; |
---|
[1639] | 699 | MPI_Allgather(&v,1,MPI_INT,ni_g,1,MPI_INT,client->intraComm) ; |
---|
[1337] | 700 | v=nj ; |
---|
[1639] | 701 | MPI_Allgather(&v,1,MPI_INT,nj_g,1,MPI_INT,client->intraComm) ; |
---|
[815] | 702 | |
---|
[1639] | 703 | MPI_Allgatherv(lon.dataFirst(),ni,MPI_DOUBLE,lon_g.dataFirst(),ni_g, ibegin_g,MPI_DOUBLE,client->intraComm) ; |
---|
| 704 | MPI_Allgatherv(lat.dataFirst(),nj,MPI_DOUBLE,lat_g.dataFirst(),nj_g, jbegin_g,MPI_DOUBLE,client->intraComm) ; |
---|
[815] | 705 | |
---|
[809] | 706 | delete[] ibegin_g ; |
---|
| 707 | delete[] jbegin_g ; |
---|
| 708 | delete[] ni_g ; |
---|
| 709 | delete[] nj_g ; |
---|
| 710 | } |
---|
[1622] | 711 | CATCH_DUMP_ATTR |
---|
[809] | 712 | |
---|
| 713 | void CDomain::fillInRectilinearBoundLonLat(CArray<double,1>& lon, CArray<double,1>& lat, |
---|
| 714 | CArray<double,2>& boundsLon, CArray<double,2>& boundsLat) |
---|
[1622] | 715 | TRY |
---|
| 716 | { |
---|
[688] | 717 | int i,j,k; |
---|
[815] | 718 | |
---|
[688] | 719 | const int nvertexValue = 4; |
---|
[775] | 720 | boundsLon.resize(nvertexValue,ni*nj); |
---|
[688] | 721 | |
---|
[899] | 722 | if (ni_glo>1) |
---|
| 723 | { |
---|
| 724 | double lonStepStart = lon(1)-lon(0); |
---|
| 725 | bounds_lon_start=lon(0) - lonStepStart/2; |
---|
| 726 | double lonStepEnd = lon(ni_glo-1)-lon(ni_glo-2); |
---|
| 727 | bounds_lon_end=lon(ni_glo-1) + lonStepEnd/2; |
---|
| 728 | double errorBoundsLon = std::abs(360-std::abs(bounds_lon_end-bounds_lon_start)); |
---|
[810] | 729 | |
---|
[899] | 730 | // if errorBoundsLon is reasonably small (0.1 x cell size) consider it as closed in longitude |
---|
| 731 | if (errorBoundsLon < std::abs(lonStepStart)*1e-1 || errorBoundsLon < std::abs(lonStepEnd)*1e-1 ) |
---|
| 732 | { |
---|
| 733 | bounds_lon_start= (lon(0) + lon(ni_glo-1)-360)/2 ; |
---|
| 734 | bounds_lon_end= (lon(0) +360 + lon(ni_glo-1))/2 ; |
---|
| 735 | } |
---|
| 736 | } |
---|
| 737 | else |
---|
[810] | 738 | { |
---|
[899] | 739 | if (bounds_lon_start.isEmpty()) bounds_lon_start=-180. ; |
---|
| 740 | if (bounds_lon_end.isEmpty()) bounds_lon_end=180.-1e-8 ; |
---|
[810] | 741 | } |
---|
[906] | 742 | |
---|
[809] | 743 | for(j=0;j<nj;++j) |
---|
| 744 | for(i=0;i<ni;++i) |
---|
| 745 | { |
---|
| 746 | k=j*ni+i; |
---|
| 747 | boundsLon(0,k) = boundsLon(1,k) = (0 == (ibegin + i)) ? bounds_lon_start |
---|
| 748 | : (lon(ibegin + i)+lon(ibegin + i-1))/2; |
---|
| 749 | boundsLon(2,k) = boundsLon(3,k) = ((ibegin + i + 1) == ni_glo) ? bounds_lon_end |
---|
| 750 | : (lon(ibegin + i + 1)+lon(ibegin + i))/2; |
---|
| 751 | } |
---|
[727] | 752 | |
---|
[815] | 753 | |
---|
[809] | 754 | boundsLat.resize(nvertexValue,nj*ni); |
---|
[810] | 755 | bool isNorthPole=false ; |
---|
| 756 | bool isSouthPole=false ; |
---|
[809] | 757 | if (std::abs(90 - std::abs(lat(0))) < NumTraits<double>::epsilon()) isNorthPole = true; |
---|
| 758 | if (std::abs(90 - std::abs(lat(nj_glo-1))) < NumTraits<double>::epsilon()) isSouthPole = true; |
---|
[808] | 759 | |
---|
[810] | 760 | // lat boundaries beyond pole the assimilate it to pole |
---|
| 761 | // lat boundarie is relativelly close to pole (0.1 x cell size) assimilate it to pole |
---|
[899] | 762 | if (nj_glo>1) |
---|
[810] | 763 | { |
---|
[899] | 764 | double latStepStart = lat(1)-lat(0); |
---|
| 765 | if (isNorthPole) bounds_lat_start=lat(0); |
---|
| 766 | else |
---|
[810] | 767 | { |
---|
[899] | 768 | bounds_lat_start=lat(0)-latStepStart/2; |
---|
| 769 | if (bounds_lat_start >= 90 ) bounds_lat_start=90 ; |
---|
| 770 | else if (bounds_lat_start <= -90 ) bounds_lat_start=-90 ; |
---|
| 771 | else if (bounds_lat_start <= 90 && bounds_lat_start >= lat(0)) |
---|
| 772 | { |
---|
| 773 | if ( std::abs(90-bounds_lat_start) <= 0.1*std::abs(latStepStart)) bounds_lat_start=90 ; |
---|
| 774 | } |
---|
| 775 | else if (bounds_lat_start >= -90 && bounds_lat_start <= lat(0)) |
---|
| 776 | { |
---|
| 777 | if ( std::abs(-90 - bounds_lat_start) <= 0.1*std::abs(latStepStart)) bounds_lat_start=-90 ; |
---|
| 778 | } |
---|
[810] | 779 | } |
---|
[899] | 780 | |
---|
| 781 | double latStepEnd = lat(nj_glo-1)-lat(nj_glo-2); |
---|
| 782 | if (isSouthPole) bounds_lat_end=lat(nj_glo-1); |
---|
| 783 | else |
---|
[810] | 784 | { |
---|
[899] | 785 | bounds_lat_end=lat(nj_glo-1)+latStepEnd/2; |
---|
| 786 | |
---|
| 787 | if (bounds_lat_end >= 90 ) bounds_lat_end=90 ; |
---|
| 788 | else if (bounds_lat_end <= -90 ) bounds_lat_end=-90 ; |
---|
| 789 | else if (bounds_lat_end <= 90 && bounds_lat_end >= lat(nj_glo-1)) |
---|
| 790 | { |
---|
| 791 | if ( std::abs(90-bounds_lat_end) <= 0.1*std::abs(latStepEnd)) bounds_lat_end=90 ; |
---|
| 792 | } |
---|
| 793 | else if (bounds_lat_end >= -90 && bounds_lat_end <= lat(nj_glo-1)) |
---|
| 794 | { |
---|
| 795 | if ( std::abs(-90 - bounds_lat_end) <= 0.1*std::abs(latStepEnd)) bounds_lat_end=-90 ; |
---|
| 796 | } |
---|
[810] | 797 | } |
---|
| 798 | } |
---|
| 799 | else |
---|
| 800 | { |
---|
[1158] | 801 | if (bounds_lat_start.isEmpty()) bounds_lat_start=-90. ; |
---|
[899] | 802 | if (bounds_lat_end.isEmpty()) bounds_lat_end=90 ; |
---|
[815] | 803 | } |
---|
| 804 | |
---|
[809] | 805 | for(j=0;j<nj;++j) |
---|
| 806 | for(i=0;i<ni;++i) |
---|
| 807 | { |
---|
| 808 | k=j*ni+i; |
---|
| 809 | boundsLat(1,k) = boundsLat(2,k) = (0 == (jbegin + j)) ? bounds_lat_start |
---|
| 810 | : (lat(jbegin + j)+lat(jbegin + j-1))/2; |
---|
| 811 | boundsLat(0,k) = boundsLat(3,k) = ((jbegin + j +1) == nj_glo) ? bounds_lat_end |
---|
| 812 | : (lat(jbegin + j + 1)+lat(jbegin + j))/2; |
---|
| 813 | } |
---|
[688] | 814 | } |
---|
[1622] | 815 | CATCH_DUMP_ATTR |
---|
[688] | 816 | |
---|
[1236] | 817 | /* |
---|
| 818 | General check of the domain to verify its mandatory attributes |
---|
| 819 | */ |
---|
[467] | 820 | void CDomain::checkDomain(void) |
---|
[1622] | 821 | TRY |
---|
[219] | 822 | { |
---|
[664] | 823 | if (type.isEmpty()) |
---|
| 824 | { |
---|
| 825 | ERROR("CDomain::checkDomain(void)", |
---|
[679] | 826 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 827 | << "The domain type is mandatory, " |
---|
| 828 | << "please define the 'type' attribute.") |
---|
[664] | 829 | } |
---|
[969] | 830 | |
---|
[953] | 831 | if (type == type_attr::gaussian) |
---|
| 832 | { |
---|
[1337] | 833 | hasPole=true ; |
---|
| 834 | type.setValue(type_attr::unstructured) ; |
---|
| 835 | } |
---|
| 836 | else if (type == type_attr::rectilinear) hasPole=true ; |
---|
| 837 | |
---|
[679] | 838 | if (type == type_attr::unstructured) |
---|
[664] | 839 | { |
---|
[679] | 840 | if (ni_glo.isEmpty()) |
---|
[664] | 841 | { |
---|
[679] | 842 | ERROR("CDomain::checkDomain(void)", |
---|
| 843 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 844 | << "The global domain is badly defined, " |
---|
| 845 | << "the mandatory 'ni_glo' attribute is missing.") |
---|
[664] | 846 | } |
---|
[679] | 847 | else if (ni_glo <= 0) |
---|
| 848 | { |
---|
| 849 | ERROR("CDomain::checkDomain(void)", |
---|
| 850 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 851 | << "The global domain is badly defined, " |
---|
| 852 | << "'ni_glo' attribute should be strictly positive so 'ni_glo = " << ni_glo.getValue() << "' is invalid.") |
---|
| 853 | } |
---|
[664] | 854 | isUnstructed_ = true; |
---|
| 855 | nj_glo = 1; |
---|
| 856 | nj = 1; |
---|
| 857 | jbegin = 0; |
---|
[942] | 858 | if (!i_index.isEmpty()) ni = i_index.numElements(); |
---|
[664] | 859 | j_index.resize(ni); |
---|
| 860 | for(int i=0;i<ni;++i) j_index(i)=0; |
---|
[611] | 861 | |
---|
[664] | 862 | if (!area.isEmpty()) |
---|
| 863 | area.transposeSelf(1, 0); |
---|
| 864 | } |
---|
[679] | 865 | |
---|
| 866 | if (ni_glo.isEmpty()) |
---|
[664] | 867 | { |
---|
[679] | 868 | ERROR("CDomain::checkDomain(void)", |
---|
| 869 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 870 | << "The global domain is badly defined, " |
---|
| 871 | << "the mandatory 'ni_glo' attribute is missing.") |
---|
[664] | 872 | } |
---|
[679] | 873 | else if (ni_glo <= 0) |
---|
| 874 | { |
---|
| 875 | ERROR("CDomain::checkDomain(void)", |
---|
| 876 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 877 | << "The global domain is badly defined, " |
---|
| 878 | << "'ni_glo' attribute should be strictly positive so 'ni_glo = " << ni_glo.getValue() << "' is invalid.") |
---|
| 879 | } |
---|
[509] | 880 | |
---|
[679] | 881 | if (nj_glo.isEmpty()) |
---|
| 882 | { |
---|
| 883 | ERROR("CDomain::checkDomain(void)", |
---|
| 884 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 885 | << "The global domain is badly defined, " |
---|
| 886 | << "the mandatory 'nj_glo' attribute is missing.") |
---|
| 887 | } |
---|
| 888 | else if (nj_glo <= 0) |
---|
| 889 | { |
---|
| 890 | ERROR("CDomain::checkDomain(void)", |
---|
| 891 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 892 | << "The global domain is badly defined, " |
---|
| 893 | << "'nj_glo' attribute should be strictly positive so 'nj_glo = " << nj_glo.getValue() << "' is invalid.") |
---|
| 894 | } |
---|
| 895 | |
---|
[664] | 896 | checkLocalIDomain(); |
---|
| 897 | checkLocalJDomain(); |
---|
[509] | 898 | |
---|
[664] | 899 | if (i_index.isEmpty()) |
---|
| 900 | { |
---|
| 901 | i_index.resize(ni*nj); |
---|
| 902 | for (int j = 0; j < nj; ++j) |
---|
| 903 | for (int i = 0; i < ni; ++i) i_index(i+j*ni) = i+ibegin; |
---|
| 904 | } |
---|
[594] | 905 | |
---|
[664] | 906 | if (j_index.isEmpty()) |
---|
| 907 | { |
---|
| 908 | j_index.resize(ni*nj); |
---|
| 909 | for (int j = 0; j < nj; ++j) |
---|
| 910 | for (int i = 0; i < ni; ++i) j_index(i+j*ni) = j+jbegin; |
---|
[1158] | 911 | } |
---|
[821] | 912 | } |
---|
[1622] | 913 | CATCH_DUMP_ATTR |
---|
[663] | 914 | |
---|
[1215] | 915 | size_t CDomain::getGlobalWrittenSize(void) |
---|
| 916 | { |
---|
[1553] | 917 | return ni_glo*nj_glo ; |
---|
[1215] | 918 | } |
---|
[219] | 919 | //---------------------------------------------------------------- |
---|
| 920 | |
---|
[969] | 921 | // Check validity of local domain on using the combination of 3 parameters: ibegin, ni and i_index |
---|
[219] | 922 | void CDomain::checkLocalIDomain(void) |
---|
[1622] | 923 | TRY |
---|
[219] | 924 | { |
---|
[969] | 925 | // If ibegin and ni are provided then we use them to check the validity of local domain |
---|
| 926 | if (i_index.isEmpty() && !ibegin.isEmpty() && !ni.isEmpty()) |
---|
[219] | 927 | { |
---|
[969] | 928 | if ((ni.getValue() < 0 || ibegin.getValue() < 0) || ((ibegin.getValue() + ni.getValue()) > ni_glo.getValue())) |
---|
| 929 | { |
---|
| 930 | ERROR("CDomain::checkLocalIDomain(void)", |
---|
| 931 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 932 | << "The local domain is wrongly defined," |
---|
| 933 | << " check the attributes 'ni_glo' (" << ni_glo.getValue() << "), 'ni' (" << ni.getValue() << ") and 'ibegin' (" << ibegin.getValue() << ")"); |
---|
| 934 | } |
---|
| 935 | } |
---|
| 936 | |
---|
| 937 | // i_index has higher priority than ibegin and ni |
---|
| 938 | if (!i_index.isEmpty()) |
---|
| 939 | { |
---|
[975] | 940 | int minIIndex = (0 < i_index.numElements()) ? i_index(0) : 0; |
---|
[969] | 941 | if (ni.isEmpty()) |
---|
| 942 | { |
---|
| 943 | // No information about ni |
---|
| 944 | int minIndex = ni_glo - 1; |
---|
| 945 | int maxIndex = 0; |
---|
| 946 | for (int idx = 0; idx < i_index.numElements(); ++idx) |
---|
| 947 | { |
---|
| 948 | if (i_index(idx) < minIndex) minIndex = i_index(idx); |
---|
| 949 | if (i_index(idx) > maxIndex) maxIndex = i_index(idx); |
---|
| 950 | } |
---|
| 951 | ni = maxIndex - minIndex + 1; |
---|
| 952 | minIIndex = minIIndex; |
---|
| 953 | } |
---|
| 954 | |
---|
| 955 | // It's not so correct but if ibegin is not the first value of i_index |
---|
| 956 | // then data on local domain has user-defined distribution. In this case, ibegin, ni have no meaning. |
---|
| 957 | if (ibegin.isEmpty()) ibegin = minIIndex; |
---|
| 958 | } |
---|
| 959 | else if (ibegin.isEmpty() && ni.isEmpty()) |
---|
| 960 | { |
---|
[594] | 961 | ibegin = 0; |
---|
| 962 | ni = ni_glo; |
---|
| 963 | } |
---|
[971] | 964 | else if ((!ibegin.isEmpty() && ni.isEmpty()) || (ibegin.isEmpty() && !ni.isEmpty())) |
---|
[219] | 965 | { |
---|
[969] | 966 | ERROR("CDomain::checkLocalIDomain(void)", |
---|
| 967 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
[971] | 968 | << "The local domain is wrongly defined," << endl |
---|
| 969 | << "i_index is empty and either 'ni' or 'ibegin' is not defined. " |
---|
| 970 | << "If 'ni' and 'ibegin' are used to define a domain, both of them must not be empty."); |
---|
[219] | 971 | } |
---|
[969] | 972 | |
---|
[219] | 973 | |
---|
[969] | 974 | if ((ni.getValue() < 0 || ibegin.getValue() < 0)) |
---|
[594] | 975 | { |
---|
| 976 | ERROR("CDomain::checkLocalIDomain(void)", |
---|
[679] | 977 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
[594] | 978 | << "The local domain is wrongly defined," |
---|
[679] | 979 | << " check the attributes 'ni_glo' (" << ni_glo.getValue() << "), 'ni' (" << ni.getValue() << ") and 'ibegin' (" << ibegin.getValue() << ")"); |
---|
[594] | 980 | } |
---|
[219] | 981 | } |
---|
[1622] | 982 | CATCH_DUMP_ATTR |
---|
[219] | 983 | |
---|
[969] | 984 | // Check validity of local domain on using the combination of 3 parameters: jbegin, nj and j_index |
---|
[219] | 985 | void CDomain::checkLocalJDomain(void) |
---|
[1622] | 986 | TRY |
---|
[219] | 987 | { |
---|
[969] | 988 | // If jbegin and nj are provided then we use them to check the validity of local domain |
---|
| 989 | if (j_index.isEmpty() && !jbegin.isEmpty() && !nj.isEmpty()) |
---|
[657] | 990 | { |
---|
[969] | 991 | if ((nj.getValue() < 0 || jbegin.getValue() < 0) || (jbegin.getValue() + nj.getValue()) > nj_glo.getValue()) |
---|
| 992 | { |
---|
| 993 | ERROR("CDomain::checkLocalJDomain(void)", |
---|
| 994 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 995 | << "The local domain is wrongly defined," |
---|
| 996 | << " check the attributes 'nj_glo' (" << nj_glo.getValue() << "), 'nj' (" << nj.getValue() << ") and 'jbegin' (" << jbegin.getValue() << ")"); |
---|
| 997 | } |
---|
[657] | 998 | } |
---|
[969] | 999 | |
---|
| 1000 | if (!j_index.isEmpty()) |
---|
[657] | 1001 | { |
---|
[975] | 1002 | int minJIndex = (0 < j_index.numElements()) ? j_index(0) : 0; |
---|
[969] | 1003 | if (nj.isEmpty()) |
---|
| 1004 | { |
---|
| 1005 | // No information about nj |
---|
| 1006 | int minIndex = nj_glo - 1; |
---|
| 1007 | int maxIndex = 0; |
---|
| 1008 | for (int idx = 0; idx < j_index.numElements(); ++idx) |
---|
| 1009 | { |
---|
| 1010 | if (j_index(idx) < minIndex) minIndex = j_index(idx); |
---|
| 1011 | if (j_index(idx) > maxIndex) maxIndex = j_index(idx); |
---|
| 1012 | } |
---|
| 1013 | nj = maxIndex - minIndex + 1; |
---|
| 1014 | minJIndex = minIndex; |
---|
| 1015 | } |
---|
| 1016 | // It's the same as checkLocalIDomain. It's not so correct but if jbegin is not the first value of j_index |
---|
| 1017 | // then data on local domain has user-defined distribution. In this case, jbegin has no meaning. |
---|
| 1018 | if (jbegin.isEmpty()) jbegin = minJIndex; |
---|
[657] | 1019 | } |
---|
[969] | 1020 | else if (jbegin.isEmpty() && nj.isEmpty()) |
---|
| 1021 | { |
---|
| 1022 | jbegin = 0; |
---|
| 1023 | nj = nj_glo; |
---|
| 1024 | } |
---|
[219] | 1025 | |
---|
[969] | 1026 | |
---|
| 1027 | if ((nj.getValue() < 0 || jbegin.getValue() < 0)) |
---|
| 1028 | { |
---|
| 1029 | ERROR("CDomain::checkLocalJDomain(void)", |
---|
[679] | 1030 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
[594] | 1031 | << "The local domain is wrongly defined," |
---|
[679] | 1032 | << " check the attributes 'nj_glo' (" << nj_glo.getValue() << "), 'nj' (" << nj.getValue() << ") and 'jbegin' (" << jbegin.getValue() << ")"); |
---|
[969] | 1033 | } |
---|
[219] | 1034 | } |
---|
[1622] | 1035 | CATCH_DUMP_ATTR |
---|
[219] | 1036 | |
---|
| 1037 | //---------------------------------------------------------------- |
---|
[679] | 1038 | |
---|
[219] | 1039 | void CDomain::checkMask(void) |
---|
[1622] | 1040 | TRY |
---|
[219] | 1041 | { |
---|
[664] | 1042 | if (!mask_1d.isEmpty() && !mask_2d.isEmpty()) |
---|
[657] | 1043 | ERROR("CDomain::checkMask(void)", |
---|
[679] | 1044 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1045 | << "Both mask_1d and mask_2d are defined but only one can be used at the same time." << std::endl |
---|
| 1046 | << "Please define only one mask: 'mask_1d' or 'mask_2d'."); |
---|
[657] | 1047 | |
---|
[664] | 1048 | if (!mask_1d.isEmpty() && mask_2d.isEmpty()) |
---|
[219] | 1049 | { |
---|
[664] | 1050 | if (mask_1d.numElements() != i_index.numElements()) |
---|
[657] | 1051 | ERROR("CDomain::checkMask(void)", |
---|
[679] | 1052 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1053 | << "'mask_1d' does not have the same size as the local domain." << std::endl |
---|
| 1054 | << "Local size is " << i_index.numElements() << "." << std::endl |
---|
| 1055 | << "Mask size is " << mask_1d.numElements() << "."); |
---|
[657] | 1056 | } |
---|
[509] | 1057 | |
---|
[664] | 1058 | if (mask_1d.isEmpty() && !mask_2d.isEmpty()) |
---|
[657] | 1059 | { |
---|
[679] | 1060 | if (mask_2d.extent(0) != ni || mask_2d.extent(1) != nj) |
---|
| 1061 | ERROR("CDomain::checkMask(void)", |
---|
| 1062 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1063 | << "The mask does not have the same size as the local domain." << std::endl |
---|
| 1064 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
| 1065 | << "Mask size is " << mask_2d.extent(0) << " x " << mask_2d.extent(1) << "."); |
---|
[657] | 1066 | } |
---|
[509] | 1067 | |
---|
[664] | 1068 | if (!mask_2d.isEmpty()) |
---|
[657] | 1069 | { |
---|
[1311] | 1070 | domainMask.resize(mask_2d.extent(0) * mask_2d.extent(1)); |
---|
[657] | 1071 | for (int j = 0; j < nj; ++j) |
---|
[1311] | 1072 | for (int i = 0; i < ni; ++i) domainMask(i+j*ni) = mask_2d(i,j); |
---|
| 1073 | // mask_2d.reset(); |
---|
[657] | 1074 | } |
---|
[675] | 1075 | else if (mask_1d.isEmpty()) |
---|
[657] | 1076 | { |
---|
[1311] | 1077 | domainMask.resize(i_index.numElements()); |
---|
| 1078 | for (int i = 0; i < i_index.numElements(); ++i) domainMask(i) = true; |
---|
[657] | 1079 | } |
---|
[1325] | 1080 | else |
---|
| 1081 | { |
---|
[1337] | 1082 | domainMask.resize(mask_1d.numElements()); |
---|
| 1083 | domainMask=mask_1d ; |
---|
| 1084 | } |
---|
[219] | 1085 | } |
---|
[1622] | 1086 | CATCH_DUMP_ATTR |
---|
[219] | 1087 | |
---|
[676] | 1088 | //---------------------------------------------------------------- |
---|
[219] | 1089 | |
---|
| 1090 | void CDomain::checkDomainData(void) |
---|
[1622] | 1091 | TRY |
---|
[509] | 1092 | { |
---|
[679] | 1093 | if (data_dim.isEmpty()) |
---|
[219] | 1094 | { |
---|
[679] | 1095 | data_dim.setValue(1); |
---|
[219] | 1096 | } |
---|
[679] | 1097 | else if (!(data_dim.getValue() == 1 || data_dim.getValue() == 2)) |
---|
[219] | 1098 | { |
---|
[679] | 1099 | ERROR("CDomain::checkDomainData(void)", |
---|
| 1100 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1101 | << "The data dimension is invalid, 'data_dim' must be 1 or 2 not << " << data_dim.getValue() << "."); |
---|
[219] | 1102 | } |
---|
| 1103 | |
---|
| 1104 | if (data_ibegin.isEmpty()) |
---|
[679] | 1105 | data_ibegin.setValue(0); |
---|
[660] | 1106 | if (data_jbegin.isEmpty()) |
---|
[679] | 1107 | data_jbegin.setValue(0); |
---|
[219] | 1108 | |
---|
[679] | 1109 | if (data_ni.isEmpty()) |
---|
[219] | 1110 | { |
---|
[679] | 1111 | data_ni.setValue((data_dim == 1) ? (ni.getValue() * nj.getValue()) : ni.getValue()); |
---|
[219] | 1112 | } |
---|
[679] | 1113 | else if (data_ni.getValue() < 0) |
---|
[219] | 1114 | { |
---|
[679] | 1115 | ERROR("CDomain::checkDomainData(void)", |
---|
| 1116 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1117 | << "The data size cannot be negative ('data_ni' = " << data_ni.getValue() << ")."); |
---|
[219] | 1118 | } |
---|
| 1119 | |
---|
[679] | 1120 | if (data_nj.isEmpty()) |
---|
[219] | 1121 | { |
---|
[679] | 1122 | data_nj.setValue((data_dim.getValue() == 1) ? (ni.getValue() * nj.getValue()) : nj.getValue()); |
---|
[219] | 1123 | } |
---|
[679] | 1124 | else if (data_nj.getValue() < 0) |
---|
| 1125 | { |
---|
| 1126 | ERROR("CDomain::checkDomainData(void)", |
---|
| 1127 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1128 | << "The data size cannot be negative ('data_nj' = " << data_nj.getValue() << ")."); |
---|
| 1129 | } |
---|
[219] | 1130 | } |
---|
[1622] | 1131 | CATCH_DUMP_ATTR |
---|
[219] | 1132 | |
---|
| 1133 | //---------------------------------------------------------------- |
---|
[679] | 1134 | |
---|
[219] | 1135 | void CDomain::checkCompression(void) |
---|
[1622] | 1136 | TRY |
---|
[219] | 1137 | { |
---|
[1637] | 1138 | int i,j,ind; |
---|
[219] | 1139 | if (!data_i_index.isEmpty()) |
---|
| 1140 | { |
---|
[664] | 1141 | if (!data_j_index.isEmpty() && |
---|
[678] | 1142 | data_j_index.numElements() != data_i_index.numElements()) |
---|
[664] | 1143 | { |
---|
[679] | 1144 | ERROR("CDomain::checkCompression(void)", |
---|
| 1145 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1146 | << "'data_i_index' and 'data_j_index' arrays must have the same size." << std::endl |
---|
| 1147 | << "'data_i_index' size = " << data_i_index.numElements() << std::endl |
---|
| 1148 | << "'data_j_index' size = " << data_j_index.numElements()); |
---|
[664] | 1149 | } |
---|
| 1150 | |
---|
[679] | 1151 | if (2 == data_dim) |
---|
| 1152 | { |
---|
[664] | 1153 | if (data_j_index.isEmpty()) |
---|
[660] | 1154 | { |
---|
[679] | 1155 | ERROR("CDomain::checkCompression(void)", |
---|
| 1156 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1157 | << "'data_j_index' must be defined when 'data_i_index' is set and 'data_dim' is 2."); |
---|
[660] | 1158 | } |
---|
[1637] | 1159 | for (int k=0; k<data_i_index.numElements(); ++k) |
---|
| 1160 | { |
---|
| 1161 | i = data_i_index(k)+data_ibegin ; |
---|
| 1162 | j = data_j_index(k)+data_jbegin ; |
---|
| 1163 | if (i>=0 && i<ni && j>=0 && j<nj) |
---|
| 1164 | { |
---|
| 1165 | ind=j*ni+i ; |
---|
| 1166 | if (!domainMask(ind)) |
---|
| 1167 | { |
---|
| 1168 | data_i_index(k) = -1; |
---|
| 1169 | data_j_index(k) = -1; |
---|
| 1170 | } |
---|
| 1171 | } |
---|
| 1172 | else |
---|
| 1173 | { |
---|
| 1174 | data_i_index(k) = -1; |
---|
| 1175 | data_j_index(k) = -1; |
---|
| 1176 | } |
---|
| 1177 | } |
---|
[679] | 1178 | } |
---|
| 1179 | else // (1 == data_dim) |
---|
| 1180 | { |
---|
[664] | 1181 | if (data_j_index.isEmpty()) |
---|
| 1182 | { |
---|
[679] | 1183 | data_j_index.resize(data_ni); |
---|
[1637] | 1184 | data_j_index = 0; |
---|
[664] | 1185 | } |
---|
[1637] | 1186 | for (int k=0; k<data_i_index.numElements(); ++k) |
---|
| 1187 | { |
---|
| 1188 | i=data_i_index(k)+data_ibegin ; |
---|
| 1189 | if (i>=0 && i < domainMask.size()) |
---|
| 1190 | { |
---|
| 1191 | if (!domainMask(i)) data_i_index(k) = -1; |
---|
| 1192 | } |
---|
| 1193 | else |
---|
| 1194 | data_i_index(k) = -1; |
---|
| 1195 | |
---|
| 1196 | if (!domainMask(i)) data_i_index(k) = -1; |
---|
| 1197 | } |
---|
[679] | 1198 | } |
---|
[219] | 1199 | } |
---|
| 1200 | else |
---|
| 1201 | { |
---|
[679] | 1202 | if (data_dim == 2 && !data_j_index.isEmpty()) |
---|
| 1203 | ERROR("CDomain::checkCompression(void)", |
---|
| 1204 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1205 | << "'data_i_index' must be defined when 'data_j_index' is set and 'data_dim' is 2."); |
---|
[219] | 1206 | |
---|
[679] | 1207 | if (1 == data_dim) |
---|
| 1208 | { |
---|
| 1209 | data_i_index.resize(data_ni); |
---|
| 1210 | data_j_index.resize(data_ni); |
---|
[1637] | 1211 | data_j_index = 0; |
---|
[666] | 1212 | |
---|
[1637] | 1213 | for (int k = 0; k < data_ni; ++k) |
---|
[679] | 1214 | { |
---|
[1637] | 1215 | i=k+data_ibegin ; |
---|
| 1216 | if (i>=0 && i < domainMask.size()) |
---|
| 1217 | { |
---|
| 1218 | if (domainMask(i)) |
---|
| 1219 | data_i_index(k) = k; |
---|
| 1220 | else |
---|
| 1221 | data_i_index(k) = -1; |
---|
| 1222 | } |
---|
| 1223 | else |
---|
| 1224 | data_i_index(k) = -1; |
---|
[679] | 1225 | } |
---|
| 1226 | } |
---|
| 1227 | else // (data_dim == 2) |
---|
| 1228 | { |
---|
| 1229 | const int dsize = data_ni * data_nj; |
---|
| 1230 | data_i_index.resize(dsize); |
---|
| 1231 | data_j_index.resize(dsize); |
---|
[509] | 1232 | |
---|
[1637] | 1233 | for(int count = 0, kj = 0; kj < data_nj; ++kj) |
---|
[679] | 1234 | { |
---|
[1637] | 1235 | for(int ki = 0; ki < data_ni; ++ki, ++count) |
---|
[219] | 1236 | { |
---|
[1637] | 1237 | i = ki + data_ibegin; |
---|
| 1238 | j = kj + data_jbegin; |
---|
| 1239 | ind=j*ni+i ; |
---|
| 1240 | if (i>=0 && i<ni && j>=0 && j<nj) |
---|
| 1241 | { |
---|
| 1242 | if (domainMask(ind)) |
---|
| 1243 | { |
---|
| 1244 | data_i_index(count) = ki; |
---|
| 1245 | data_j_index(count) = kj; |
---|
| 1246 | } |
---|
| 1247 | else |
---|
| 1248 | { |
---|
| 1249 | data_i_index(count) = -1; |
---|
| 1250 | data_j_index(count) = -1; |
---|
| 1251 | } |
---|
| 1252 | } |
---|
| 1253 | else |
---|
| 1254 | { |
---|
| 1255 | data_i_index(count) = -1; |
---|
| 1256 | data_j_index(count) = -1; |
---|
| 1257 | } |
---|
[219] | 1258 | } |
---|
[679] | 1259 | } |
---|
| 1260 | } |
---|
[219] | 1261 | } |
---|
| 1262 | } |
---|
[1622] | 1263 | CATCH_DUMP_ATTR |
---|
[219] | 1264 | |
---|
[666] | 1265 | //---------------------------------------------------------------- |
---|
[893] | 1266 | void CDomain::computeLocalMask(void) |
---|
[1622] | 1267 | TRY |
---|
[893] | 1268 | { |
---|
[1429] | 1269 | localMask.resize(i_index.numElements()) ; |
---|
[893] | 1270 | localMask=false ; |
---|
[676] | 1271 | |
---|
[893] | 1272 | size_t dn=data_i_index.numElements() ; |
---|
| 1273 | int i,j ; |
---|
| 1274 | size_t k,ind ; |
---|
[906] | 1275 | |
---|
[893] | 1276 | for(k=0;k<dn;k++) |
---|
| 1277 | { |
---|
| 1278 | if (data_dim==2) |
---|
| 1279 | { |
---|
| 1280 | i=data_i_index(k)+data_ibegin ; |
---|
| 1281 | j=data_j_index(k)+data_jbegin ; |
---|
[1429] | 1282 | if (i>=0 && i<ni && j>=0 && j<nj) |
---|
| 1283 | { |
---|
| 1284 | ind=j*ni+i ; |
---|
[1431] | 1285 | localMask(ind)=domainMask(ind) ; |
---|
[1429] | 1286 | } |
---|
[893] | 1287 | } |
---|
| 1288 | else |
---|
| 1289 | { |
---|
[1429] | 1290 | i=data_i_index(k)+data_ibegin ; |
---|
| 1291 | if (i>=0 && i<i_index.numElements()) |
---|
| 1292 | { |
---|
| 1293 | ind=i ; |
---|
[1431] | 1294 | localMask(ind)=domainMask(ind) ; |
---|
[1429] | 1295 | } |
---|
[893] | 1296 | } |
---|
| 1297 | } |
---|
| 1298 | } |
---|
[1622] | 1299 | CATCH_DUMP_ATTR |
---|
[893] | 1300 | |
---|
[676] | 1301 | void CDomain::checkEligibilityForCompressedOutput(void) |
---|
[1622] | 1302 | TRY |
---|
[676] | 1303 | { |
---|
| 1304 | // We don't check if the mask or the indexes are valid here, just if they have been defined at this point. |
---|
| 1305 | isCompressible_ = !mask_1d.isEmpty() || !mask_2d.isEmpty() || !data_i_index.isEmpty(); |
---|
| 1306 | } |
---|
[1622] | 1307 | CATCH_DUMP_ATTR |
---|
[676] | 1308 | |
---|
| 1309 | //---------------------------------------------------------------- |
---|
| 1310 | |
---|
[1129] | 1311 | /* |
---|
[1549] | 1312 | Fill in longitude, latitude, bounds, and area into internal values (lonvalue, latvalue, bounds_lonvalue, bounds_latvalue, areavalue) |
---|
| 1313 | which will be used by XIOS. |
---|
[1129] | 1314 | */ |
---|
[666] | 1315 | void CDomain::completeLonLatClient(void) |
---|
[1622] | 1316 | TRY |
---|
[219] | 1317 | { |
---|
[1099] | 1318 | bool lonlatValueExisted = (0 != lonvalue.numElements()) || (0 != latvalue.numElements()); |
---|
[1305] | 1319 | checkBounds() ; |
---|
[1549] | 1320 | checkArea() ; |
---|
| 1321 | |
---|
[1099] | 1322 | if (!lonvalue_2d.isEmpty() && !lonlatValueExisted) |
---|
[664] | 1323 | { |
---|
[1025] | 1324 | lonvalue.resize(ni * nj); |
---|
| 1325 | latvalue.resize(ni * nj); |
---|
[761] | 1326 | if (hasBounds) |
---|
| 1327 | { |
---|
[1025] | 1328 | bounds_lonvalue.resize(nvertex, ni * nj); |
---|
| 1329 | bounds_latvalue.resize(nvertex, ni * nj); |
---|
[761] | 1330 | } |
---|
| 1331 | |
---|
| 1332 | for (int j = 0; j < nj; ++j) |
---|
| 1333 | { |
---|
| 1334 | for (int i = 0; i < ni; ++i) |
---|
| 1335 | { |
---|
| 1336 | int k = j * ni + i; |
---|
| 1337 | |
---|
[1025] | 1338 | lonvalue(k) = lonvalue_2d(i,j); |
---|
| 1339 | latvalue(k) = latvalue_2d(i,j); |
---|
[761] | 1340 | |
---|
| 1341 | if (hasBounds) |
---|
| 1342 | { |
---|
| 1343 | for (int n = 0; n < nvertex; ++n) |
---|
| 1344 | { |
---|
[1025] | 1345 | bounds_lonvalue(n,k) = bounds_lon_2d(n,i,j); |
---|
| 1346 | bounds_latvalue(n,k) = bounds_lat_2d(n,i,j); |
---|
[761] | 1347 | } |
---|
| 1348 | } |
---|
| 1349 | } |
---|
| 1350 | } |
---|
[664] | 1351 | } |
---|
[1099] | 1352 | else if (!lonvalue_1d.isEmpty() && !lonlatValueExisted) |
---|
[664] | 1353 | { |
---|
| 1354 | if (type_attr::rectilinear == type) |
---|
| 1355 | { |
---|
[679] | 1356 | if (ni == lonvalue_1d.numElements() && nj == latvalue_1d.numElements()) |
---|
[664] | 1357 | { |
---|
[1025] | 1358 | lonvalue.resize(ni * nj); |
---|
| 1359 | latvalue.resize(ni * nj); |
---|
[761] | 1360 | if (hasBounds) |
---|
| 1361 | { |
---|
[1025] | 1362 | bounds_lonvalue.resize(nvertex, ni * nj); |
---|
| 1363 | bounds_latvalue.resize(nvertex, ni * nj); |
---|
[761] | 1364 | } |
---|
| 1365 | |
---|
| 1366 | for (int j = 0; j < nj; ++j) |
---|
| 1367 | { |
---|
| 1368 | for (int i = 0; i < ni; ++i) |
---|
[664] | 1369 | { |
---|
[761] | 1370 | int k = j * ni + i; |
---|
| 1371 | |
---|
[1025] | 1372 | lonvalue(k) = lonvalue_1d(i); |
---|
| 1373 | latvalue(k) = latvalue_1d(j); |
---|
[761] | 1374 | |
---|
[664] | 1375 | if (hasBounds) |
---|
| 1376 | { |
---|
[679] | 1377 | for (int n = 0; n < nvertex; ++n) |
---|
[666] | 1378 | { |
---|
[1025] | 1379 | bounds_lonvalue(n,k) = bounds_lon_1d(n,i); |
---|
| 1380 | bounds_latvalue(n,k) = bounds_lat_1d(n,j); |
---|
[666] | 1381 | } |
---|
[664] | 1382 | } |
---|
| 1383 | } |
---|
[761] | 1384 | } |
---|
| 1385 | } |
---|
[1099] | 1386 | else if (i_index.numElements() == lonvalue_1d.numElements() && j_index.numElements() == latvalue_1d.numElements() && !lonlatValueExisted) |
---|
[974] | 1387 | { |
---|
[1025] | 1388 | lonvalue.reference(lonvalue_1d); |
---|
| 1389 | latvalue.reference(latvalue_1d); |
---|
[974] | 1390 | if (hasBounds) |
---|
| 1391 | { |
---|
[1025] | 1392 | bounds_lonvalue.reference(bounds_lon_1d); |
---|
| 1393 | bounds_latvalue.reference(bounds_lat_1d); |
---|
[974] | 1394 | } |
---|
| 1395 | } |
---|
[761] | 1396 | else |
---|
| 1397 | ERROR("CDomain::completeLonClient(void)", |
---|
| 1398 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1399 | << "'lonvalue_1d' and 'latvalue_1d' does not have the same size as the local domain." << std::endl |
---|
[974] | 1400 | << "'lonvalue_1d' size is " << lonvalue_1d.numElements() |
---|
| 1401 | << " and 'latvalue_1d' size is " << latvalue_1d.numElements() << std::endl |
---|
| 1402 | << " They should be correspondingly " << ni.getValue() << " and " << nj.getValue() << " or " << std::endl |
---|
| 1403 | << i_index.numElements() << " and " << j_index.numElements() << "."); |
---|
[664] | 1404 | } |
---|
[1099] | 1405 | else if (type == type_attr::curvilinear || type == type_attr::unstructured && !lonlatValueExisted) |
---|
[664] | 1406 | { |
---|
[1025] | 1407 | lonvalue.reference(lonvalue_1d); |
---|
| 1408 | latvalue.reference(latvalue_1d); |
---|
[664] | 1409 | if (hasBounds) |
---|
| 1410 | { |
---|
[1025] | 1411 | bounds_lonvalue.reference(bounds_lon_1d); |
---|
| 1412 | bounds_latvalue.reference(bounds_lat_1d); |
---|
[664] | 1413 | } |
---|
| 1414 | } |
---|
| 1415 | } |
---|
[1549] | 1416 | |
---|
| 1417 | if (!area.isEmpty() && areavalue.isEmpty()) |
---|
| 1418 | { |
---|
| 1419 | areavalue.resize(ni*nj); |
---|
| 1420 | for (int j = 0; j < nj; ++j) |
---|
| 1421 | { |
---|
| 1422 | for (int i = 0; i < ni; ++i) |
---|
| 1423 | { |
---|
| 1424 | int k = j * ni + i; |
---|
| 1425 | areavalue(k) = area(i,j); |
---|
| 1426 | } |
---|
| 1427 | } |
---|
| 1428 | } |
---|
[664] | 1429 | } |
---|
[1622] | 1430 | CATCH_DUMP_ATTR |
---|
[664] | 1431 | |
---|
[1129] | 1432 | /* |
---|
| 1433 | Convert internal longitude latitude value used by XIOS to "lonvalue_*" which can be retrieved with Fortran interface |
---|
| 1434 | */ |
---|
| 1435 | void CDomain::convertLonLatValue(void) |
---|
[1622] | 1436 | TRY |
---|
[1129] | 1437 | { |
---|
| 1438 | bool lonlatValueExisted = (0 != lonvalue.numElements()) || (0 != latvalue.numElements()); |
---|
| 1439 | if (!lonvalue_2d.isEmpty() && lonlatValueExisted) |
---|
| 1440 | { |
---|
| 1441 | lonvalue_2d.resize(ni,nj); |
---|
| 1442 | latvalue_2d.resize(ni,nj); |
---|
| 1443 | if (hasBounds) |
---|
| 1444 | { |
---|
| 1445 | bounds_lon_2d.resize(nvertex, ni, nj); |
---|
| 1446 | bounds_lat_2d.resize(nvertex, ni, nj); |
---|
| 1447 | } |
---|
| 1448 | |
---|
| 1449 | for (int j = 0; j < nj; ++j) |
---|
| 1450 | { |
---|
| 1451 | for (int i = 0; i < ni; ++i) |
---|
| 1452 | { |
---|
| 1453 | int k = j * ni + i; |
---|
| 1454 | |
---|
| 1455 | lonvalue_2d(i,j) = lonvalue(k); |
---|
| 1456 | latvalue_2d(i,j) = latvalue(k); |
---|
| 1457 | |
---|
| 1458 | if (hasBounds) |
---|
| 1459 | { |
---|
| 1460 | for (int n = 0; n < nvertex; ++n) |
---|
| 1461 | { |
---|
| 1462 | bounds_lon_2d(n,i,j) = bounds_lonvalue(n,k); |
---|
| 1463 | bounds_lat_2d(n,i,j) = bounds_latvalue(n,k); |
---|
| 1464 | } |
---|
| 1465 | } |
---|
| 1466 | } |
---|
| 1467 | } |
---|
| 1468 | } |
---|
| 1469 | else if (!lonvalue_1d.isEmpty() && lonlatValueExisted) |
---|
| 1470 | { |
---|
| 1471 | if (type_attr::rectilinear == type) |
---|
| 1472 | { |
---|
| 1473 | if (ni == lonvalue_1d.numElements() && nj == latvalue_1d.numElements()) |
---|
| 1474 | { |
---|
| 1475 | lonvalue.resize(ni * nj); |
---|
| 1476 | latvalue.resize(ni * nj); |
---|
| 1477 | if (hasBounds) |
---|
| 1478 | { |
---|
| 1479 | bounds_lonvalue.resize(nvertex, ni * nj); |
---|
| 1480 | bounds_latvalue.resize(nvertex, ni * nj); |
---|
| 1481 | } |
---|
| 1482 | |
---|
| 1483 | for (int j = 0; j < nj; ++j) |
---|
| 1484 | { |
---|
| 1485 | for (int i = 0; i < ni; ++i) |
---|
| 1486 | { |
---|
| 1487 | int k = j * ni + i; |
---|
| 1488 | |
---|
| 1489 | lonvalue(k) = lonvalue_1d(i); |
---|
| 1490 | latvalue(k) = latvalue_1d(j); |
---|
| 1491 | |
---|
| 1492 | if (hasBounds) |
---|
| 1493 | { |
---|
| 1494 | for (int n = 0; n < nvertex; ++n) |
---|
| 1495 | { |
---|
| 1496 | bounds_lonvalue(n,k) = bounds_lon_1d(n,i); |
---|
| 1497 | bounds_latvalue(n,k) = bounds_lat_1d(n,j); |
---|
| 1498 | } |
---|
| 1499 | } |
---|
| 1500 | } |
---|
| 1501 | } |
---|
| 1502 | } |
---|
| 1503 | else if (i_index.numElements() == lonvalue_1d.numElements() && j_index.numElements() == latvalue_1d.numElements() && !lonlatValueExisted) |
---|
| 1504 | { |
---|
| 1505 | lonvalue.reference(lonvalue_1d); |
---|
| 1506 | latvalue.reference(latvalue_1d); |
---|
| 1507 | if (hasBounds) |
---|
| 1508 | { |
---|
| 1509 | bounds_lonvalue.reference(bounds_lon_1d); |
---|
| 1510 | bounds_latvalue.reference(bounds_lat_1d); |
---|
| 1511 | } |
---|
| 1512 | } |
---|
| 1513 | else |
---|
| 1514 | ERROR("CDomain::completeLonClient(void)", |
---|
| 1515 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1516 | << "'lonvalue_1d' and 'latvalue_1d' does not have the same size as the local domain." << std::endl |
---|
| 1517 | << "'lonvalue_1d' size is " << lonvalue_1d.numElements() |
---|
| 1518 | << " and 'latvalue_1d' size is " << latvalue_1d.numElements() << std::endl |
---|
| 1519 | << " They should be correspondingly " << ni.getValue() << " and " << nj.getValue() << " or " << std::endl |
---|
| 1520 | << i_index.numElements() << " and " << j_index.numElements() << "."); |
---|
| 1521 | } |
---|
| 1522 | else if (type == type_attr::curvilinear || type == type_attr::unstructured && !lonlatValueExisted) |
---|
| 1523 | { |
---|
| 1524 | lonvalue.reference(lonvalue_1d); |
---|
| 1525 | latvalue.reference(latvalue_1d); |
---|
| 1526 | if (hasBounds) |
---|
| 1527 | { |
---|
| 1528 | bounds_lonvalue.reference(bounds_lon_1d); |
---|
| 1529 | bounds_latvalue.reference(bounds_lat_1d); |
---|
| 1530 | } |
---|
| 1531 | } |
---|
| 1532 | } |
---|
| 1533 | } |
---|
[1622] | 1534 | CATCH_DUMP_ATTR |
---|
[1129] | 1535 | |
---|
[449] | 1536 | void CDomain::checkBounds(void) |
---|
[1622] | 1537 | TRY |
---|
[449] | 1538 | { |
---|
[1099] | 1539 | bool hasBoundValues = (0 != bounds_lonvalue.numElements()) || (0 != bounds_latvalue.numElements()); |
---|
| 1540 | if (!nvertex.isEmpty() && nvertex > 0 && !hasBoundValues) |
---|
[449] | 1541 | { |
---|
[664] | 1542 | if (!bounds_lon_1d.isEmpty() && !bounds_lon_2d.isEmpty()) |
---|
| 1543 | ERROR("CDomain::checkBounds(void)", |
---|
[679] | 1544 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1545 | << "Only one longitude boundary attribute can be used but both 'bounds_lon_1d' and 'bounds_lon_2d' are defined." << std::endl |
---|
| 1546 | << "Define only one longitude boundary attribute: 'bounds_lon_1d' or 'bounds_lon_2d'."); |
---|
[664] | 1547 | |
---|
| 1548 | if (!bounds_lat_1d.isEmpty() && !bounds_lat_2d.isEmpty()) |
---|
| 1549 | ERROR("CDomain::checkBounds(void)", |
---|
[679] | 1550 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1551 | << "Only one latitude boundary attribute can be used but both 'bounds_lat_1d' and 'bounds_lat_2d' are defined." << std::endl |
---|
| 1552 | << "Define only one latitude boundary attribute: 'bounds_lat_1d' or 'bounds_lat_2d'."); |
---|
[664] | 1553 | |
---|
| 1554 | if ((!bounds_lon_1d.isEmpty() && bounds_lat_1d.isEmpty()) || (bounds_lon_1d.isEmpty() && !bounds_lat_1d.isEmpty())) |
---|
| 1555 | { |
---|
| 1556 | ERROR("CDomain::checkBounds(void)", |
---|
[679] | 1557 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1558 | << "Only 'bounds_lon_1d' or 'bounds_lat_1d' is defined." << std::endl |
---|
| 1559 | << "Please define either both attributes or none."); |
---|
[664] | 1560 | } |
---|
| 1561 | |
---|
| 1562 | if ((!bounds_lon_2d.isEmpty() && bounds_lat_2d.isEmpty()) || (bounds_lon_2d.isEmpty() && !bounds_lat_2d.isEmpty())) |
---|
| 1563 | { |
---|
| 1564 | ERROR("CDomain::checkBounds(void)", |
---|
[679] | 1565 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1566 | << "Only 'bounds_lon_2d' or 'bounds_lat_2d' is defined." << std::endl |
---|
| 1567 | << "Please define either both attributes or none."); |
---|
[664] | 1568 | } |
---|
| 1569 | |
---|
[691] | 1570 | if (!bounds_lon_1d.isEmpty() && nvertex.getValue() != bounds_lon_1d.extent(0)) |
---|
[679] | 1571 | ERROR("CDomain::checkBounds(void)", |
---|
| 1572 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1573 | << "'bounds_lon_1d' dimension is not compatible with 'nvertex'." << std::endl |
---|
[1549] | 1574 | << "'bounds_lon_1d' dimension is " << bounds_lon_1d.extent(0) |
---|
[679] | 1575 | << " but nvertex is " << nvertex.getValue() << "."); |
---|
[664] | 1576 | |
---|
[691] | 1577 | if (!bounds_lon_2d.isEmpty() && nvertex.getValue() != bounds_lon_2d.extent(0)) |
---|
[679] | 1578 | ERROR("CDomain::checkBounds(void)", |
---|
| 1579 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1580 | << "'bounds_lon_2d' dimension is not compatible with 'nvertex'." << std::endl |
---|
[1549] | 1581 | << "'bounds_lon_2d' dimension is " << bounds_lon_2d.extent(0) |
---|
[679] | 1582 | << " but nvertex is " << nvertex.getValue() << "."); |
---|
[664] | 1583 | |
---|
| 1584 | if (!bounds_lon_1d.isEmpty() && lonvalue_1d.isEmpty()) |
---|
[679] | 1585 | ERROR("CDomain::checkBounds(void)", |
---|
| 1586 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1587 | << "Since 'bounds_lon_1d' is defined, 'lonvalue_1d' must be defined too." << std::endl); |
---|
[664] | 1588 | |
---|
| 1589 | if (!bounds_lon_2d.isEmpty() && lonvalue_2d.isEmpty()) |
---|
[679] | 1590 | ERROR("CDomain::checkBounds(void)", |
---|
| 1591 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1592 | << "Since 'bounds_lon_2d' is defined, 'lonvalue_2d' must be defined too." << std::endl); |
---|
[664] | 1593 | |
---|
[691] | 1594 | if (!bounds_lat_1d.isEmpty() && nvertex.getValue() != bounds_lat_1d.extent(0)) |
---|
[679] | 1595 | ERROR("CDomain::checkBounds(void)", |
---|
| 1596 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1597 | << "'bounds_lat_1d' dimension is not compatible with 'nvertex'." << std::endl |
---|
[1549] | 1598 | << "'bounds_lat_1d' dimension is " << bounds_lat_1d.extent(0) |
---|
[679] | 1599 | << " but nvertex is " << nvertex.getValue() << "."); |
---|
[664] | 1600 | |
---|
[691] | 1601 | if (!bounds_lat_2d.isEmpty() && nvertex.getValue() != bounds_lat_2d.extent(0)) |
---|
[679] | 1602 | ERROR("CDomain::checkBounds(void)", |
---|
| 1603 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1604 | << "'bounds_lat_2d' dimension is not compatible with 'nvertex'." << std::endl |
---|
[1549] | 1605 | << "'bounds_lat_2d' dimension is " << bounds_lat_2d.extent(0) |
---|
[679] | 1606 | << " but nvertex is " << nvertex.getValue() << "."); |
---|
[664] | 1607 | |
---|
| 1608 | if (!bounds_lat_1d.isEmpty() && latvalue_1d.isEmpty()) |
---|
[679] | 1609 | ERROR("CDomain::checkBounds(void)", |
---|
| 1610 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1611 | << "Since 'bounds_lat_1d' is defined, 'latvalue_1d' must be defined too." << std::endl); |
---|
[664] | 1612 | |
---|
| 1613 | if (!bounds_lat_2d.isEmpty() && latvalue_2d.isEmpty()) |
---|
[679] | 1614 | ERROR("CDomain::checkBounds(void)", |
---|
| 1615 | << "Since 'bounds_lat_2d' is defined, 'latvalue_2d' must be defined too." << std::endl); |
---|
| 1616 | |
---|
[1486] | 1617 | // In case of reading UGRID bounds values are not required |
---|
| 1618 | hasBounds = (!bounds_lat_1d.isEmpty() || !bounds_lat_2d.isEmpty() ); |
---|
[449] | 1619 | } |
---|
[1132] | 1620 | else if (hasBoundValues) |
---|
| 1621 | { |
---|
| 1622 | hasBounds = true; |
---|
| 1623 | } |
---|
[509] | 1624 | else |
---|
[449] | 1625 | { |
---|
[679] | 1626 | hasBounds = false; |
---|
[449] | 1627 | } |
---|
| 1628 | } |
---|
[1622] | 1629 | CATCH_DUMP_ATTR |
---|
[509] | 1630 | |
---|
[611] | 1631 | void CDomain::checkArea(void) |
---|
[1622] | 1632 | TRY |
---|
[611] | 1633 | { |
---|
[1249] | 1634 | bool hasAreaValue = (!areavalue.isEmpty() && 0 != areavalue.numElements()); |
---|
| 1635 | hasArea = !area.isEmpty(); |
---|
| 1636 | if (hasArea && !hasAreaValue) |
---|
[611] | 1637 | { |
---|
| 1638 | if (area.extent(0) != ni || area.extent(1) != nj) |
---|
| 1639 | { |
---|
[679] | 1640 | ERROR("CDomain::checkArea(void)", |
---|
| 1641 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1642 | << "The area does not have the same size as the local domain." << std::endl |
---|
| 1643 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
| 1644 | << "Area size is " << area.extent(0) << " x " << area.extent(1) << "."); |
---|
[611] | 1645 | } |
---|
[1549] | 1646 | // if (areavalue.isEmpty()) |
---|
| 1647 | // { |
---|
| 1648 | // areavalue.resize(ni*nj); |
---|
| 1649 | // for (int j = 0; j < nj; ++j) |
---|
| 1650 | // { |
---|
| 1651 | // for (int i = 0; i < ni; ++i) |
---|
| 1652 | // { |
---|
| 1653 | // int k = j * ni + i; |
---|
| 1654 | // areavalue(k) = area(i,j); |
---|
| 1655 | // } |
---|
| 1656 | // } |
---|
| 1657 | // } |
---|
[611] | 1658 | } |
---|
| 1659 | } |
---|
[1622] | 1660 | CATCH_DUMP_ATTR |
---|
[611] | 1661 | |
---|
[665] | 1662 | void CDomain::checkLonLat() |
---|
[1622] | 1663 | TRY |
---|
[665] | 1664 | { |
---|
[1284] | 1665 | if (!hasLonLat) hasLonLat = (!latvalue_1d.isEmpty() && !lonvalue_1d.isEmpty()) || |
---|
| 1666 | (!latvalue_2d.isEmpty() && !lonvalue_2d.isEmpty()); |
---|
[1099] | 1667 | bool hasLonLatValue = (0 != lonvalue.numElements()) || (0 != latvalue.numElements()); |
---|
| 1668 | if (hasLonLat && !hasLonLatValue) |
---|
[666] | 1669 | { |
---|
| 1670 | if (!lonvalue_1d.isEmpty() && !lonvalue_2d.isEmpty()) |
---|
[762] | 1671 | ERROR("CDomain::checkLonLat()", |
---|
[679] | 1672 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1673 | << "Only one longitude attribute can be used but both 'lonvalue_1d' and 'lonvalue_2d' are defined." << std::endl |
---|
| 1674 | << "Define only one longitude attribute: 'lonvalue_1d' or 'lonvalue_2d'."); |
---|
[666] | 1675 | |
---|
| 1676 | if (!lonvalue_1d.isEmpty() && lonvalue_2d.isEmpty()) |
---|
| 1677 | { |
---|
[687] | 1678 | if ((type_attr::rectilinear != type) && (lonvalue_1d.numElements() != i_index.numElements())) |
---|
[762] | 1679 | ERROR("CDomain::checkLonLat()", |
---|
[679] | 1680 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1681 | << "'lonvalue_1d' does not have the same size as the local domain." << std::endl |
---|
| 1682 | << "Local size is " << i_index.numElements() << "." << std::endl |
---|
| 1683 | << "'lonvalue_1d' size is " << lonvalue_1d.numElements() << "."); |
---|
[666] | 1684 | } |
---|
| 1685 | |
---|
| 1686 | if (lonvalue_1d.isEmpty() && !lonvalue_2d.isEmpty()) |
---|
| 1687 | { |
---|
[679] | 1688 | if (lonvalue_2d.extent(0) != ni || lonvalue_2d.extent(1) != nj) |
---|
[762] | 1689 | ERROR("CDomain::checkLonLat()", |
---|
[679] | 1690 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1691 | << "'lonvalue_2d' does not have the same size as the local domain." << std::endl |
---|
| 1692 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
| 1693 | << "'lonvalue_2d' size is " << lonvalue_2d.extent(0) << " x " << lonvalue_2d.extent(1) << "."); |
---|
[666] | 1694 | } |
---|
| 1695 | |
---|
| 1696 | if (!latvalue_1d.isEmpty() && !latvalue_2d.isEmpty()) |
---|
[762] | 1697 | ERROR("CDomain::checkLonLat()", |
---|
[679] | 1698 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1699 | << "Only one latitude attribute can be used but both 'latvalue_1d' and 'latvalue_2d' are defined." << std::endl |
---|
| 1700 | << "Define only one latitude attribute: 'latvalue_1d' or 'latvalue_2d'."); |
---|
[666] | 1701 | |
---|
| 1702 | if (!latvalue_1d.isEmpty() && latvalue_2d.isEmpty()) |
---|
| 1703 | { |
---|
[687] | 1704 | if ((type_attr::rectilinear != type) && (latvalue_1d.numElements() != i_index.numElements())) |
---|
[762] | 1705 | ERROR("CDomain::checkLonLat()", |
---|
[679] | 1706 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1707 | << "'latvalue_1d' does not have the same size as the local domain." << std::endl |
---|
| 1708 | << "Local size is " << i_index.numElements() << "." << std::endl |
---|
| 1709 | << "'latvalue_1d' size is " << latvalue_1d.numElements() << "."); |
---|
[666] | 1710 | } |
---|
| 1711 | |
---|
| 1712 | if (latvalue_1d.isEmpty() && !latvalue_2d.isEmpty()) |
---|
| 1713 | { |
---|
[679] | 1714 | if (latvalue_2d.extent(0) != ni || latvalue_2d.extent(1) != nj) |
---|
[762] | 1715 | ERROR("CDomain::checkLonLat()", |
---|
[679] | 1716 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 1717 | << "'latvalue_2d' does not have the same size as the local domain." << std::endl |
---|
| 1718 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
| 1719 | << "'latvalue_2d' size is " << latvalue_2d.extent(0) << " x " << latvalue_2d.extent(1) << "."); |
---|
[666] | 1720 | } |
---|
| 1721 | } |
---|
[665] | 1722 | } |
---|
[1622] | 1723 | CATCH_DUMP_ATTR |
---|
[665] | 1724 | |
---|
[657] | 1725 | void CDomain::checkAttributesOnClientAfterTransformation() |
---|
[1622] | 1726 | TRY |
---|
[657] | 1727 | { |
---|
| 1728 | CContext* context=CContext::getCurrent() ; |
---|
| 1729 | |
---|
| 1730 | if (this->isClientAfterTransformationChecked) return; |
---|
| 1731 | if (context->hasClient) |
---|
| 1732 | { |
---|
[1025] | 1733 | this->computeConnectedClients(); |
---|
[1054] | 1734 | if (hasLonLat) |
---|
| 1735 | if (!context->hasServer) |
---|
| 1736 | this->completeLonLatClient(); |
---|
[657] | 1737 | } |
---|
| 1738 | |
---|
| 1739 | this->isClientAfterTransformationChecked = true; |
---|
| 1740 | } |
---|
[1622] | 1741 | CATCH_DUMP_ATTR |
---|
[657] | 1742 | |
---|
[219] | 1743 | //---------------------------------------------------------------- |
---|
[667] | 1744 | // Divide function checkAttributes into 2 seperate ones |
---|
[509] | 1745 | // This function only checks all attributes of current domain |
---|
| 1746 | void CDomain::checkAttributesOnClient() |
---|
[1622] | 1747 | TRY |
---|
[509] | 1748 | { |
---|
| 1749 | if (this->isClientChecked) return; |
---|
| 1750 | CContext* context=CContext::getCurrent(); |
---|
[219] | 1751 | |
---|
[1025] | 1752 | if (context->hasClient && !context->hasServer) |
---|
| 1753 | { |
---|
| 1754 | this->checkDomain(); |
---|
| 1755 | this->checkBounds(); |
---|
| 1756 | this->checkArea(); |
---|
| 1757 | this->checkLonLat(); |
---|
| 1758 | } |
---|
[509] | 1759 | |
---|
[1025] | 1760 | if (context->hasClient && !context->hasServer) |
---|
[1129] | 1761 | { // Ct client uniquement |
---|
[509] | 1762 | this->checkMask(); |
---|
| 1763 | this->checkDomainData(); |
---|
| 1764 | this->checkCompression(); |
---|
[893] | 1765 | this->computeLocalMask() ; |
---|
[509] | 1766 | } |
---|
| 1767 | else |
---|
[1129] | 1768 | { // Ct serveur uniquement |
---|
[509] | 1769 | } |
---|
| 1770 | |
---|
| 1771 | this->isClientChecked = true; |
---|
| 1772 | } |
---|
[1622] | 1773 | CATCH_DUMP_ATTR |
---|
[509] | 1774 | |
---|
| 1775 | // Send all checked attributes to server |
---|
| 1776 | void CDomain::sendCheckedAttributes() |
---|
[1622] | 1777 | TRY |
---|
[509] | 1778 | { |
---|
| 1779 | if (!this->isClientChecked) checkAttributesOnClient(); |
---|
[657] | 1780 | if (!this->isClientAfterTransformationChecked) checkAttributesOnClientAfterTransformation(); |
---|
[509] | 1781 | CContext* context=CContext::getCurrent() ; |
---|
| 1782 | |
---|
| 1783 | if (this->isChecked) return; |
---|
| 1784 | if (context->hasClient) |
---|
| 1785 | { |
---|
[1025] | 1786 | sendAttributes(); |
---|
[509] | 1787 | } |
---|
| 1788 | this->isChecked = true; |
---|
| 1789 | } |
---|
[1622] | 1790 | CATCH_DUMP_ATTR |
---|
[509] | 1791 | |
---|
[219] | 1792 | void CDomain::checkAttributes(void) |
---|
[1622] | 1793 | TRY |
---|
[219] | 1794 | { |
---|
| 1795 | if (this->isChecked) return; |
---|
[347] | 1796 | CContext* context=CContext::getCurrent() ; |
---|
[219] | 1797 | |
---|
[467] | 1798 | this->checkDomain(); |
---|
[665] | 1799 | this->checkLonLat(); |
---|
[449] | 1800 | this->checkBounds(); |
---|
[611] | 1801 | this->checkArea(); |
---|
[509] | 1802 | |
---|
[300] | 1803 | if (context->hasClient) |
---|
[1129] | 1804 | { // Ct client uniquement |
---|
[219] | 1805 | this->checkMask(); |
---|
| 1806 | this->checkDomainData(); |
---|
| 1807 | this->checkCompression(); |
---|
[893] | 1808 | this->computeLocalMask() ; |
---|
[666] | 1809 | |
---|
[219] | 1810 | } |
---|
| 1811 | else |
---|
[1129] | 1812 | { // Ct serveur uniquement |
---|
[219] | 1813 | } |
---|
[509] | 1814 | |
---|
[300] | 1815 | if (context->hasClient) |
---|
| 1816 | { |
---|
[1025] | 1817 | this->computeConnectedClients(); |
---|
[666] | 1818 | this->completeLonLatClient(); |
---|
[300] | 1819 | } |
---|
[509] | 1820 | |
---|
[219] | 1821 | this->isChecked = true; |
---|
| 1822 | } |
---|
[1622] | 1823 | CATCH_DUMP_ATTR |
---|
[509] | 1824 | |
---|
[1025] | 1825 | /*! |
---|
[1144] | 1826 | Compute the connection of a client to other clients to determine which clients to send attributes to. |
---|
| 1827 | The sending clients are supposed to already know the distribution of receiving clients (In simple cases, it's band) |
---|
| 1828 | The connection among clients is calculated by using global index. |
---|
| 1829 | A client connects to other clients which holds the same global index as it. |
---|
[1025] | 1830 | */ |
---|
| 1831 | void CDomain::computeConnectedClients() |
---|
[1622] | 1832 | TRY |
---|
[657] | 1833 | { |
---|
[553] | 1834 | CContext* context=CContext::getCurrent() ; |
---|
[1236] | 1835 | |
---|
| 1836 | // This line should be changed soon. |
---|
| 1837 | int nbSrvPools = (context->hasServer) ? (context->hasClient ? context->clientPrimServer.size() : 0) : 1; |
---|
[1099] | 1838 | |
---|
[1236] | 1839 | nbSenders.clear(); |
---|
| 1840 | connectedServerRank_.clear(); |
---|
| 1841 | |
---|
[1054] | 1842 | for (int p = 0; p < nbSrvPools; ++p) |
---|
[1027] | 1843 | { |
---|
[1054] | 1844 | CContextClient* client = (0 != context->clientPrimServer.size()) ? context->clientPrimServer[p] : context->client; |
---|
[1099] | 1845 | int nbServer = client->serverSize; |
---|
[1337] | 1846 | int nbClient = client->clientSize; |
---|
[1099] | 1847 | int rank = client->clientRank; |
---|
[1027] | 1848 | bool doComputeGlobalIndexServer = true; |
---|
[449] | 1849 | |
---|
[1346] | 1850 | if (connectedServerRank_.find(nbServer) == connectedServerRank_.end()) |
---|
[1099] | 1851 | { |
---|
| 1852 | |
---|
[1346] | 1853 | if (indSrv_.find(nbServer) == indSrv_.end()) |
---|
| 1854 | { |
---|
[1553] | 1855 | int i,j,i_ind,j_ind, nbIndex=i_index.numElements(); |
---|
| 1856 | int globalIndexCount = i_index.numElements(); |
---|
| 1857 | // Fill in index |
---|
| 1858 | CArray<size_t,1> globalIndexDomain(nbIndex); |
---|
| 1859 | size_t globalIndex; |
---|
[1099] | 1860 | |
---|
[1553] | 1861 | for (i = 0; i < nbIndex; ++i) |
---|
| 1862 | { |
---|
| 1863 | i_ind=i_index(i); |
---|
| 1864 | j_ind=j_index(i); |
---|
| 1865 | globalIndex = i_ind + j_ind * ni_glo; |
---|
| 1866 | globalIndexDomain(i) = globalIndex; |
---|
| 1867 | } |
---|
[1346] | 1868 | |
---|
[1553] | 1869 | if (globalLocalIndexMap_.empty()) |
---|
| 1870 | { |
---|
| 1871 | for (i = 0; i < nbIndex; ++i) |
---|
| 1872 | globalLocalIndexMap_[globalIndexDomain(i)] = i; |
---|
| 1873 | } |
---|
[657] | 1874 | |
---|
[1553] | 1875 | size_t globalSizeIndex = 1, indexBegin, indexEnd; |
---|
| 1876 | int range, clientSize = client->clientSize; |
---|
| 1877 | std::vector<int> nGlobDomain(2); |
---|
| 1878 | nGlobDomain[0] = this->ni_glo; |
---|
| 1879 | nGlobDomain[1] = this->nj_glo; |
---|
| 1880 | for (int i = 0; i < nGlobDomain.size(); ++i) globalSizeIndex *= nGlobDomain[i]; |
---|
| 1881 | indexBegin = 0; |
---|
| 1882 | if (globalSizeIndex <= clientSize) |
---|
| 1883 | { |
---|
| 1884 | indexBegin = rank%globalSizeIndex; |
---|
| 1885 | indexEnd = indexBegin; |
---|
| 1886 | } |
---|
| 1887 | else |
---|
| 1888 | { |
---|
| 1889 | for (int i = 0; i < clientSize; ++i) |
---|
| 1890 | { |
---|
| 1891 | range = globalSizeIndex / clientSize; |
---|
| 1892 | if (i < (globalSizeIndex%clientSize)) ++range; |
---|
| 1893 | if (i == client->clientRank) break; |
---|
| 1894 | indexBegin += range; |
---|
| 1895 | } |
---|
| 1896 | indexEnd = indexBegin + range - 1; |
---|
| 1897 | } |
---|
[509] | 1898 | |
---|
[1553] | 1899 | // Even if servers have no index, they must received something from client |
---|
| 1900 | // We only use several client to send "empty" message to these servers |
---|
| 1901 | CServerDistributionDescription serverDescription(nGlobDomain, nbServer); |
---|
| 1902 | std::vector<int> serverZeroIndex; |
---|
| 1903 | if (isUnstructed_) serverZeroIndex = serverDescription.computeServerGlobalIndexInRange(std::make_pair<size_t&,size_t&>(indexBegin, indexEnd), 0); |
---|
| 1904 | else serverZeroIndex = serverDescription.computeServerGlobalIndexInRange(std::make_pair<size_t&,size_t&>(indexBegin, indexEnd), 1); |
---|
[1027] | 1905 | |
---|
[1553] | 1906 | std::list<int> serverZeroIndexLeader; |
---|
| 1907 | std::list<int> serverZeroIndexNotLeader; |
---|
| 1908 | CContextClient::computeLeader(client->clientRank, client->clientSize, serverZeroIndex.size(), serverZeroIndexLeader, serverZeroIndexNotLeader); |
---|
| 1909 | for (std::list<int>::iterator it = serverZeroIndexLeader.begin(); it != serverZeroIndexLeader.end(); ++it) |
---|
| 1910 | *it = serverZeroIndex[*it]; |
---|
[1099] | 1911 | |
---|
[1553] | 1912 | CClientServerMapping* clientServerMap = new CClientServerMappingDistributed(serverDescription.getGlobalIndexRange(), client->intraComm); |
---|
| 1913 | clientServerMap->computeServerIndexMapping(globalIndexDomain, nbServer); |
---|
| 1914 | CClientServerMapping::GlobalIndexMap& globalIndexDomainOnServer = clientServerMap->getGlobalIndexOnServer(); |
---|
[1337] | 1915 | |
---|
[1553] | 1916 | CClientServerMapping::GlobalIndexMap::const_iterator it = globalIndexDomainOnServer.begin(), |
---|
[1346] | 1917 | ite = globalIndexDomainOnServer.end(); |
---|
[1553] | 1918 | indSrv_[nbServer].swap(globalIndexDomainOnServer); |
---|
| 1919 | connectedServerRank_[nbServer].clear(); |
---|
| 1920 | for (it = indSrv_[nbServer].begin(); it != ite; ++it) |
---|
| 1921 | connectedServerRank_[nbServer].push_back(it->first); |
---|
[584] | 1922 | |
---|
[1553] | 1923 | for (std::list<int>::const_iterator it = serverZeroIndexLeader.begin(); it != serverZeroIndexLeader.end(); ++it) |
---|
| 1924 | connectedServerRank_[nbServer].push_back(*it); |
---|
[1232] | 1925 | |
---|
[1553] | 1926 | // Even if a client has no index, it must connect to at least one server and |
---|
| 1927 | // send an "empty" data to this server |
---|
| 1928 | if (connectedServerRank_[nbServer].empty()) |
---|
| 1929 | connectedServerRank_[nbServer].push_back(client->clientRank % client->serverSize); |
---|
[1232] | 1930 | |
---|
[1637] | 1931 | // Now check if all servers have data to receive. If not, master client will send empty data. |
---|
| 1932 | // This ensures that all servers will participate in collective calls upon receiving even if they have no date to receive. |
---|
| 1933 | std::vector<int> counts (clientSize); |
---|
| 1934 | std::vector<int> displs (clientSize); |
---|
| 1935 | displs[0] = 0; |
---|
| 1936 | int localCount = connectedServerRank_[nbServer].size() ; |
---|
[1639] | 1937 | MPI_Gather(&localCount, 1, MPI_INT, &counts[0], 1, MPI_INT, 0, client->intraComm) ; |
---|
[1637] | 1938 | for (int i = 0; i < clientSize-1; ++i) |
---|
| 1939 | { |
---|
| 1940 | displs[i+1] = displs[i] + counts[i]; |
---|
| 1941 | } |
---|
| 1942 | std::vector<int> allConnectedServers(displs[clientSize-1]+counts[clientSize-1]); |
---|
[1639] | 1943 | MPI_Gatherv(&(connectedServerRank_[nbServer])[0], localCount, MPI_INT, &allConnectedServers[0], &counts[0], &displs[0], MPI_INT, 0, client->intraComm); |
---|
[1637] | 1944 | |
---|
| 1945 | if ((allConnectedServers.size() != nbServer) && (rank == 0)) |
---|
| 1946 | { |
---|
| 1947 | std::vector<bool> isSrvConnected (nbServer, false); |
---|
| 1948 | for (int i = 0; i < allConnectedServers.size(); ++i) isSrvConnected[allConnectedServers[i]] = true; |
---|
| 1949 | for (int i = 0; i < nbServer; ++i) |
---|
| 1950 | { |
---|
| 1951 | if (!isSrvConnected[i]) connectedServerRank_[nbServer].push_back(i); |
---|
| 1952 | } |
---|
| 1953 | } |
---|
[1553] | 1954 | nbSenders[nbServer] = clientServerMap->computeConnectedClients(client->serverSize, client->clientSize, client->intraComm, connectedServerRank_[nbServer]); |
---|
| 1955 | delete clientServerMap; |
---|
[1346] | 1956 | } |
---|
[1337] | 1957 | } |
---|
[1027] | 1958 | } |
---|
[300] | 1959 | } |
---|
[1622] | 1960 | CATCH_DUMP_ATTR |
---|
[467] | 1961 | |
---|
[1144] | 1962 | /*! |
---|
| 1963 | Compute index to write data. We only write data on the zoomed region, therefore, there should |
---|
| 1964 | be a map between the complete grid and the reduced grid where we write data. |
---|
| 1965 | By using global index we can easily create this kind of mapping. |
---|
| 1966 | */ |
---|
[1129] | 1967 | void CDomain::computeWrittenIndex() |
---|
[1622] | 1968 | TRY |
---|
[1129] | 1969 | { |
---|
| 1970 | if (computedWrittenIndex_) return; |
---|
| 1971 | computedWrittenIndex_ = true; |
---|
| 1972 | |
---|
[1143] | 1973 | CContext* context=CContext::getCurrent(); |
---|
| 1974 | CContextServer* server = context->server; |
---|
[1129] | 1975 | |
---|
| 1976 | std::vector<int> nBegin(2), nSize(2), nBeginGlobal(2), nGlob(2); |
---|
[1553] | 1977 | nBegin[0] = ibegin; nBegin[1] = jbegin; |
---|
| 1978 | nSize[0] = ni; nSize[1] = nj; |
---|
[1129] | 1979 | nBeginGlobal[0] = 0; nBeginGlobal[1] = 0; |
---|
| 1980 | nGlob[0] = ni_glo; nGlob[1] = nj_glo; |
---|
[1143] | 1981 | CDistributionServer srvDist(server->intraCommSize, nBegin, nSize, nBeginGlobal, nGlob); |
---|
[1129] | 1982 | const CArray<size_t,1>& writtenGlobalIndex = srvDist.getGlobalIndex(); |
---|
| 1983 | |
---|
| 1984 | size_t nbWritten = 0, indGlo; |
---|
[1542] | 1985 | std::unordered_map<size_t,size_t>::const_iterator itb = globalLocalIndexMap_.begin(), |
---|
[1129] | 1986 | ite = globalLocalIndexMap_.end(), it; |
---|
| 1987 | CArray<size_t,1>::const_iterator itSrvb = writtenGlobalIndex.begin(), |
---|
| 1988 | itSrve = writtenGlobalIndex.end(), itSrv; |
---|
[1143] | 1989 | |
---|
[1390] | 1990 | localIndexToWriteOnServer.resize(writtenGlobalIndex.numElements()); |
---|
[1143] | 1991 | nbWritten = 0; |
---|
| 1992 | for (itSrv = itSrvb; itSrv != itSrve; ++itSrv) |
---|
| 1993 | { |
---|
| 1994 | indGlo = *itSrv; |
---|
| 1995 | if (ite != globalLocalIndexMap_.find(indGlo)) |
---|
[1129] | 1996 | { |
---|
| 1997 | localIndexToWriteOnServer(nbWritten) = globalLocalIndexMap_[indGlo]; |
---|
[1390] | 1998 | } |
---|
| 1999 | else |
---|
| 2000 | { |
---|
[1637] | 2001 | localIndexToWriteOnServer(nbWritten) = -1; |
---|
[1390] | 2002 | } |
---|
[1637] | 2003 | ++nbWritten; |
---|
[1129] | 2004 | } |
---|
[1249] | 2005 | } |
---|
[1622] | 2006 | CATCH_DUMP_ATTR |
---|
[1249] | 2007 | |
---|
[1639] | 2008 | void CDomain::computeWrittenCompressedIndex(MPI_Comm writtenComm) |
---|
[1622] | 2009 | TRY |
---|
[1249] | 2010 | { |
---|
| 2011 | int writtenCommSize; |
---|
[1639] | 2012 | MPI_Comm_size(writtenComm, &writtenCommSize); |
---|
[1249] | 2013 | if (compressedIndexToWriteOnServer.find(writtenCommSize) != compressedIndexToWriteOnServer.end()) |
---|
| 2014 | return; |
---|
| 2015 | |
---|
| 2016 | if (isCompressible()) |
---|
| 2017 | { |
---|
| 2018 | size_t nbWritten = 0, indGlo; |
---|
| 2019 | CContext* context=CContext::getCurrent(); |
---|
| 2020 | CContextServer* server = context->server; |
---|
| 2021 | |
---|
| 2022 | std::vector<int> nBegin(2), nSize(2), nBeginGlobal(2), nGlob(2); |
---|
[1553] | 2023 | nBegin[0] = ibegin; nBegin[1] = jbegin; |
---|
| 2024 | nSize[0] = ni; nSize[1] = nj; |
---|
[1249] | 2025 | nBeginGlobal[0] = 0; nBeginGlobal[1] = 0; |
---|
| 2026 | nGlob[0] = ni_glo; nGlob[1] = nj_glo; |
---|
| 2027 | CDistributionServer srvDist(server->intraCommSize, nBegin, nSize, nBeginGlobal, nGlob); |
---|
| 2028 | const CArray<size_t,1>& writtenGlobalIndex = srvDist.getGlobalIndex(); |
---|
| 2029 | |
---|
[1542] | 2030 | std::unordered_map<size_t,size_t>::const_iterator itb = globalLocalIndexMap_.begin(), |
---|
[1249] | 2031 | ite = globalLocalIndexMap_.end(), it; |
---|
| 2032 | CArray<size_t,1>::const_iterator itSrvb = writtenGlobalIndex.begin(), |
---|
| 2033 | itSrve = writtenGlobalIndex.end(), itSrv; |
---|
[1542] | 2034 | std::unordered_map<size_t,size_t> localGlobalIndexMap; |
---|
[1249] | 2035 | for (itSrv = itSrvb; itSrv != itSrve; ++itSrv) |
---|
[1143] | 2036 | { |
---|
[1249] | 2037 | indGlo = *itSrv; |
---|
| 2038 | if (ite != globalLocalIndexMap_.find(indGlo)) |
---|
[1143] | 2039 | { |
---|
[1249] | 2040 | localGlobalIndexMap[localIndexToWriteOnServer(nbWritten)] = indGlo; |
---|
| 2041 | ++nbWritten; |
---|
| 2042 | } |
---|
| 2043 | } |
---|
[1143] | 2044 | |
---|
[1249] | 2045 | nbWritten = 0; |
---|
| 2046 | for (int idx = 0; idx < data_i_index.numElements(); ++idx) |
---|
| 2047 | { |
---|
| 2048 | if (localGlobalIndexMap.end() != localGlobalIndexMap.find(data_i_index(idx))) |
---|
[1143] | 2049 | { |
---|
[1249] | 2050 | ++nbWritten; |
---|
[1143] | 2051 | } |
---|
[1249] | 2052 | } |
---|
[1143] | 2053 | |
---|
[1249] | 2054 | compressedIndexToWriteOnServer[writtenCommSize].resize(nbWritten); |
---|
| 2055 | nbWritten = 0; |
---|
| 2056 | for (int idx = 0; idx < data_i_index.numElements(); ++idx) |
---|
| 2057 | { |
---|
| 2058 | if (localGlobalIndexMap.end() != localGlobalIndexMap.find(data_i_index(idx))) |
---|
[1143] | 2059 | { |
---|
[1249] | 2060 | compressedIndexToWriteOnServer[writtenCommSize](nbWritten) = localGlobalIndexMap[data_i_index(idx)]; |
---|
| 2061 | ++nbWritten; |
---|
[1143] | 2062 | } |
---|
[1249] | 2063 | } |
---|
[1143] | 2064 | |
---|
[1249] | 2065 | numberWrittenIndexes_[writtenCommSize] = nbWritten; |
---|
[1672] | 2066 | bool distributed_glo, distributed=isDistributed() ; |
---|
| 2067 | MPI_Allreduce(&distributed,&distributed_glo, 1, MPI_INT, MPI_LOR, writtenComm) ; |
---|
| 2068 | |
---|
| 2069 | if (distributed_glo) |
---|
[1249] | 2070 | { |
---|
| 2071 | |
---|
[1639] | 2072 | MPI_Allreduce(&numberWrittenIndexes_[writtenCommSize], &totalNumberWrittenIndexes_[writtenCommSize], 1, MPI_INT, MPI_SUM, writtenComm); |
---|
| 2073 | MPI_Scan(&numberWrittenIndexes_[writtenCommSize], &offsetWrittenIndexes_[writtenCommSize], 1, MPI_INT, MPI_SUM, writtenComm); |
---|
[1249] | 2074 | offsetWrittenIndexes_[writtenCommSize] -= numberWrittenIndexes_[writtenCommSize]; |
---|
| 2075 | } |
---|
| 2076 | else |
---|
| 2077 | totalNumberWrittenIndexes_[writtenCommSize] = numberWrittenIndexes_[writtenCommSize]; |
---|
| 2078 | } |
---|
| 2079 | } |
---|
[1622] | 2080 | CATCH_DUMP_ATTR |
---|
[1129] | 2081 | |
---|
[667] | 2082 | /*! |
---|
[1025] | 2083 | Send all attributes from client to connected clients |
---|
| 2084 | The attributes will be rebuilt on receiving side |
---|
[667] | 2085 | */ |
---|
[1025] | 2086 | void CDomain::sendAttributes() |
---|
[1622] | 2087 | TRY |
---|
[1025] | 2088 | { |
---|
[1054] | 2089 | sendDistributionAttributes(); |
---|
[1236] | 2090 | sendIndex(); |
---|
[1025] | 2091 | sendLonLat(); |
---|
| 2092 | sendArea(); |
---|
| 2093 | sendDataIndex(); |
---|
| 2094 | } |
---|
[1622] | 2095 | CATCH |
---|
[1025] | 2096 | /*! |
---|
[1553] | 2097 | Send global index from client to connected client(s) |
---|
[1025] | 2098 | */ |
---|
[665] | 2099 | void CDomain::sendIndex() |
---|
[1622] | 2100 | TRY |
---|
[300] | 2101 | { |
---|
[610] | 2102 | int ns, n, i, j, ind, nv, idx; |
---|
[1353] | 2103 | std::list<CContextClient*>::iterator it; |
---|
[1345] | 2104 | for (it=clients.begin(); it!=clients.end(); ++it) |
---|
| 2105 | { |
---|
| 2106 | CContextClient* client = *it; |
---|
[1099] | 2107 | |
---|
[1337] | 2108 | int serverSize = client->serverSize; |
---|
[1027] | 2109 | CEventClient eventIndex(getType(), EVENT_ID_INDEX); |
---|
[665] | 2110 | |
---|
[1027] | 2111 | list<CMessage> list_msgsIndex; |
---|
[1553] | 2112 | list<CArray<int,1> > list_indGlob; |
---|
[665] | 2113 | |
---|
[1542] | 2114 | std::unordered_map<int, vector<size_t> >::const_iterator itIndex, iteIndex; |
---|
[1337] | 2115 | iteIndex = indSrv_[serverSize].end(); |
---|
| 2116 | for (int k = 0; k < connectedServerRank_[serverSize].size(); ++k) |
---|
[1027] | 2117 | { |
---|
| 2118 | int nbIndGlob = 0; |
---|
[1337] | 2119 | int rank = connectedServerRank_[serverSize][k]; |
---|
| 2120 | itIndex = indSrv_[serverSize].find(rank); |
---|
[1027] | 2121 | if (iteIndex != itIndex) |
---|
| 2122 | nbIndGlob = itIndex->second.size(); |
---|
[665] | 2123 | |
---|
[1129] | 2124 | list_indGlob.push_back(CArray<int,1>(nbIndGlob)); |
---|
[665] | 2125 | |
---|
[1027] | 2126 | CArray<int,1>& indGlob = list_indGlob.back(); |
---|
| 2127 | for (n = 0; n < nbIndGlob; ++n) |
---|
| 2128 | { |
---|
| 2129 | indGlob(n) = static_cast<int>(itIndex->second[n]); |
---|
| 2130 | } |
---|
[665] | 2131 | |
---|
[1027] | 2132 | list_msgsIndex.push_back(CMessage()); |
---|
| 2133 | list_msgsIndex.back() << this->getId() << (int)type; // enum ne fonctionne pour les message => ToFix |
---|
| 2134 | list_msgsIndex.back() << isCurvilinear; |
---|
[1129] | 2135 | list_msgsIndex.back() << list_indGlob.back(); //list_indi.back() << list_indj.back(); |
---|
[1099] | 2136 | |
---|
[1337] | 2137 | eventIndex.push(rank, nbSenders[serverSize][rank], list_msgsIndex.back()); |
---|
[1027] | 2138 | } |
---|
| 2139 | |
---|
| 2140 | client->sendEvent(eventIndex); |
---|
[665] | 2141 | } |
---|
| 2142 | } |
---|
[1622] | 2143 | CATCH_DUMP_ATTR |
---|
[665] | 2144 | |
---|
[667] | 2145 | /*! |
---|
[1099] | 2146 | Send distribution from client to other clients |
---|
| 2147 | Because a client in a level knows correctly the grid distribution of client on the next level |
---|
| 2148 | it calculates this distribution then sends it to the corresponding clients on the next level |
---|
| 2149 | */ |
---|
| 2150 | void CDomain::sendDistributionAttributes(void) |
---|
[1622] | 2151 | TRY |
---|
[1099] | 2152 | { |
---|
[1353] | 2153 | std::list<CContextClient*>::iterator it; |
---|
[1345] | 2154 | for (it=clients.begin(); it!=clients.end(); ++it) |
---|
[1099] | 2155 | { |
---|
[1345] | 2156 | CContextClient* client = *it; |
---|
| 2157 | int nbServer = client->serverSize; |
---|
[1099] | 2158 | std::vector<int> nGlobDomain(2); |
---|
| 2159 | nGlobDomain[0] = this->ni_glo; |
---|
| 2160 | nGlobDomain[1] = this->nj_glo; |
---|
| 2161 | |
---|
| 2162 | CServerDistributionDescription serverDescription(nGlobDomain, nbServer); |
---|
| 2163 | if (isUnstructed_) serverDescription.computeServerDistribution(false, 0); |
---|
| 2164 | else serverDescription.computeServerDistribution(false, 1); |
---|
| 2165 | |
---|
| 2166 | std::vector<std::vector<int> > serverIndexBegin = serverDescription.getServerIndexBegin(); |
---|
| 2167 | std::vector<std::vector<int> > serverDimensionSizes = serverDescription.getServerDimensionSizes(); |
---|
| 2168 | |
---|
| 2169 | CEventClient event(getType(),EVENT_ID_SERVER_ATTRIBUT); |
---|
[1345] | 2170 | if (client->isServerLeader()) |
---|
[1099] | 2171 | { |
---|
| 2172 | std::list<CMessage> msgs; |
---|
| 2173 | |
---|
[1345] | 2174 | const std::list<int>& ranks = client->getRanksServerLeader(); |
---|
[1099] | 2175 | for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank) |
---|
| 2176 | { |
---|
| 2177 | // Use const int to ensure CMessage holds a copy of the value instead of just a reference |
---|
| 2178 | const int ibegin_srv = serverIndexBegin[*itRank][0]; |
---|
| 2179 | const int jbegin_srv = serverIndexBegin[*itRank][1]; |
---|
| 2180 | const int ni_srv = serverDimensionSizes[*itRank][0]; |
---|
| 2181 | const int nj_srv = serverDimensionSizes[*itRank][1]; |
---|
| 2182 | |
---|
| 2183 | msgs.push_back(CMessage()); |
---|
| 2184 | CMessage& msg = msgs.back(); |
---|
| 2185 | msg << this->getId() ; |
---|
[1364] | 2186 | msg << isUnstructed_; |
---|
[1099] | 2187 | msg << ni_srv << ibegin_srv << nj_srv << jbegin_srv; |
---|
[1553] | 2188 | msg << ni_glo.getValue() << nj_glo.getValue(); |
---|
[1099] | 2189 | msg << isCompressible_; |
---|
| 2190 | |
---|
| 2191 | event.push(*itRank,1,msg); |
---|
| 2192 | } |
---|
[1345] | 2193 | client->sendEvent(event); |
---|
[1099] | 2194 | } |
---|
[1345] | 2195 | else client->sendEvent(event); |
---|
[1099] | 2196 | } |
---|
| 2197 | } |
---|
[1622] | 2198 | CATCH_DUMP_ATTR |
---|
[1099] | 2199 | |
---|
| 2200 | /*! |
---|
[1025] | 2201 | Send area from client to connected client(s) |
---|
| 2202 | */ |
---|
[665] | 2203 | void CDomain::sendArea() |
---|
[1622] | 2204 | TRY |
---|
[665] | 2205 | { |
---|
| 2206 | if (!hasArea) return; |
---|
| 2207 | |
---|
| 2208 | int ns, n, i, j, ind, nv, idx; |
---|
[1353] | 2209 | std::list<CContextClient*>::iterator it; |
---|
[1099] | 2210 | |
---|
[1345] | 2211 | for (it=clients.begin(); it!=clients.end(); ++it) |
---|
[1027] | 2212 | { |
---|
[1345] | 2213 | CContextClient* client = *it; |
---|
[1337] | 2214 | int serverSize = client->serverSize; |
---|
[665] | 2215 | |
---|
[1027] | 2216 | // send area for each connected server |
---|
| 2217 | CEventClient eventArea(getType(), EVENT_ID_AREA); |
---|
[665] | 2218 | |
---|
[1027] | 2219 | list<CMessage> list_msgsArea; |
---|
| 2220 | list<CArray<double,1> > list_area; |
---|
[665] | 2221 | |
---|
[1542] | 2222 | std::unordered_map<int, vector<size_t> >::const_iterator it, iteMap; |
---|
[1337] | 2223 | iteMap = indSrv_[serverSize].end(); |
---|
| 2224 | for (int k = 0; k < connectedServerRank_[serverSize].size(); ++k) |
---|
[1027] | 2225 | { |
---|
| 2226 | int nbData = 0; |
---|
[1337] | 2227 | int rank = connectedServerRank_[serverSize][k]; |
---|
| 2228 | it = indSrv_[serverSize].find(rank); |
---|
[1027] | 2229 | if (iteMap != it) |
---|
| 2230 | nbData = it->second.size(); |
---|
| 2231 | list_area.push_back(CArray<double,1>(nbData)); |
---|
[665] | 2232 | |
---|
[1027] | 2233 | const std::vector<size_t>& temp = it->second; |
---|
| 2234 | for (n = 0; n < nbData; ++n) |
---|
| 2235 | { |
---|
| 2236 | idx = static_cast<int>(it->second[n]); |
---|
| 2237 | list_area.back()(n) = areavalue(globalLocalIndexMap_[idx]); |
---|
| 2238 | } |
---|
| 2239 | |
---|
| 2240 | list_msgsArea.push_back(CMessage()); |
---|
| 2241 | list_msgsArea.back() << this->getId() << hasArea; |
---|
| 2242 | list_msgsArea.back() << list_area.back(); |
---|
[1337] | 2243 | eventArea.push(rank, nbSenders[serverSize][rank], list_msgsArea.back()); |
---|
[665] | 2244 | } |
---|
[1027] | 2245 | client->sendEvent(eventArea); |
---|
[665] | 2246 | } |
---|
| 2247 | } |
---|
[1622] | 2248 | CATCH_DUMP_ATTR |
---|
[665] | 2249 | |
---|
[667] | 2250 | /*! |
---|
| 2251 | Send longitude and latitude from client to servers |
---|
[1144] | 2252 | Each client send long and lat information to corresponding connected clients(s). |
---|
[667] | 2253 | Because longitude and latitude are optional, this function only called if latitude and longitude exist |
---|
| 2254 | */ |
---|
[665] | 2255 | void CDomain::sendLonLat() |
---|
[1622] | 2256 | TRY |
---|
[665] | 2257 | { |
---|
| 2258 | if (!hasLonLat) return; |
---|
| 2259 | |
---|
| 2260 | int ns, n, i, j, ind, nv, idx; |
---|
[1353] | 2261 | std::list<CContextClient*>::iterator it; |
---|
[1345] | 2262 | for (it=clients.begin(); it!=clients.end(); ++it) |
---|
[300] | 2263 | { |
---|
[1345] | 2264 | CContextClient* client = *it; |
---|
[1337] | 2265 | int serverSize = client->serverSize; |
---|
[584] | 2266 | |
---|
[1027] | 2267 | // send lon lat for each connected server |
---|
| 2268 | CEventClient eventLon(getType(), EVENT_ID_LON); |
---|
| 2269 | CEventClient eventLat(getType(), EVENT_ID_LAT); |
---|
[509] | 2270 | |
---|
[1027] | 2271 | list<CMessage> list_msgsLon, list_msgsLat; |
---|
| 2272 | list<CArray<double,1> > list_lon, list_lat; |
---|
| 2273 | list<CArray<double,2> > list_boundslon, list_boundslat; |
---|
[610] | 2274 | |
---|
[1542] | 2275 | std::unordered_map<int, vector<size_t> >::const_iterator it, iteMap; |
---|
[1337] | 2276 | iteMap = indSrv_[serverSize].end(); |
---|
| 2277 | for (int k = 0; k < connectedServerRank_[serverSize].size(); ++k) |
---|
[467] | 2278 | { |
---|
[1027] | 2279 | int nbData = 0; |
---|
[1337] | 2280 | int rank = connectedServerRank_[serverSize][k]; |
---|
| 2281 | it = indSrv_[serverSize].find(rank); |
---|
[1027] | 2282 | if (iteMap != it) |
---|
| 2283 | nbData = it->second.size(); |
---|
[509] | 2284 | |
---|
[1027] | 2285 | list_lon.push_back(CArray<double,1>(nbData)); |
---|
| 2286 | list_lat.push_back(CArray<double,1>(nbData)); |
---|
| 2287 | |
---|
[467] | 2288 | if (hasBounds) |
---|
[300] | 2289 | { |
---|
[1027] | 2290 | list_boundslon.push_back(CArray<double,2>(nvertex, nbData)); |
---|
| 2291 | list_boundslat.push_back(CArray<double,2>(nvertex, nbData)); |
---|
| 2292 | } |
---|
[610] | 2293 | |
---|
[1027] | 2294 | CArray<double,1>& lon = list_lon.back(); |
---|
| 2295 | CArray<double,1>& lat = list_lat.back(); |
---|
| 2296 | const std::vector<size_t>& temp = it->second; |
---|
| 2297 | for (n = 0; n < nbData; ++n) |
---|
| 2298 | { |
---|
| 2299 | idx = static_cast<int>(it->second[n]); |
---|
| 2300 | int localInd = globalLocalIndexMap_[idx]; |
---|
| 2301 | lon(n) = lonvalue(localInd); |
---|
| 2302 | lat(n) = latvalue(localInd); |
---|
| 2303 | |
---|
| 2304 | if (hasBounds) |
---|
[449] | 2305 | { |
---|
[1027] | 2306 | CArray<double,2>& boundslon = list_boundslon.back(); |
---|
| 2307 | CArray<double,2>& boundslat = list_boundslat.back(); |
---|
| 2308 | |
---|
| 2309 | for (nv = 0; nv < nvertex; ++nv) |
---|
| 2310 | { |
---|
| 2311 | boundslon(nv, n) = bounds_lonvalue(nv, localInd); |
---|
| 2312 | boundslat(nv, n) = bounds_latvalue(nv, localInd); |
---|
| 2313 | } |
---|
[449] | 2314 | } |
---|
[300] | 2315 | } |
---|
[509] | 2316 | |
---|
[1027] | 2317 | list_msgsLon.push_back(CMessage()); |
---|
| 2318 | list_msgsLat.push_back(CMessage()); |
---|
[518] | 2319 | |
---|
[1129] | 2320 | list_msgsLon.back() << this->getId() << hasLonLat; |
---|
| 2321 | if (hasLonLat) |
---|
| 2322 | list_msgsLon.back() << list_lon.back(); |
---|
| 2323 | list_msgsLon.back() << hasBounds; |
---|
[1027] | 2324 | if (hasBounds) |
---|
| 2325 | { |
---|
| 2326 | list_msgsLon.back() << list_boundslon.back(); |
---|
[1129] | 2327 | } |
---|
| 2328 | |
---|
| 2329 | list_msgsLat.back() << this->getId() << hasLonLat; |
---|
| 2330 | if (hasLonLat) |
---|
| 2331 | list_msgsLat.back() << list_lat.back(); |
---|
| 2332 | list_msgsLat.back() << hasBounds; |
---|
| 2333 | if (hasBounds) |
---|
| 2334 | { |
---|
[1027] | 2335 | list_msgsLat.back() << list_boundslat.back(); |
---|
| 2336 | } |
---|
| 2337 | |
---|
[1337] | 2338 | eventLon.push(rank, nbSenders[serverSize][rank], list_msgsLon.back()); |
---|
| 2339 | eventLat.push(rank, nbSenders[serverSize][rank], list_msgsLat.back()); |
---|
[518] | 2340 | } |
---|
[1027] | 2341 | client->sendEvent(eventLon); |
---|
| 2342 | client->sendEvent(eventLat); |
---|
[300] | 2343 | } |
---|
| 2344 | } |
---|
[1622] | 2345 | CATCH_DUMP_ATTR |
---|
[509] | 2346 | |
---|
[667] | 2347 | /*! |
---|
[1025] | 2348 | Send data index to corresponding connected clients. |
---|
| 2349 | Data index can be compressed however, we always send decompressed data index |
---|
| 2350 | and they will be compressed on receiving. |
---|
[1144] | 2351 | The compressed index are represented with 1 and others are represented with -1 |
---|
[667] | 2352 | */ |
---|
[1025] | 2353 | void CDomain::sendDataIndex() |
---|
[1622] | 2354 | TRY |
---|
[665] | 2355 | { |
---|
[1025] | 2356 | int ns, n, i, j, ind, nv, idx; |
---|
[1353] | 2357 | std::list<CContextClient*>::iterator it; |
---|
[1345] | 2358 | for (it=clients.begin(); it!=clients.end(); ++it) |
---|
| 2359 | { |
---|
| 2360 | CContextClient* client = *it; |
---|
[1099] | 2361 | |
---|
[1337] | 2362 | int serverSize = client->serverSize; |
---|
[1025] | 2363 | |
---|
[1027] | 2364 | // send area for each connected server |
---|
| 2365 | CEventClient eventDataIndex(getType(), EVENT_ID_DATA_INDEX); |
---|
[1025] | 2366 | |
---|
[1027] | 2367 | list<CMessage> list_msgsDataIndex; |
---|
| 2368 | list<CArray<int,1> > list_data_i_index, list_data_j_index; |
---|
[1025] | 2369 | |
---|
[1027] | 2370 | int nbIndex = i_index.numElements(); |
---|
[1129] | 2371 | int niByIndex = max(i_index) - min(i_index) + 1; |
---|
| 2372 | int njByIndex = max(j_index) - min(j_index) + 1; |
---|
| 2373 | int dataIindexBound = (1 == data_dim) ? (niByIndex * njByIndex) : niByIndex; |
---|
| 2374 | int dataJindexBound = (1 == data_dim) ? (niByIndex * njByIndex) : njByIndex; |
---|
| 2375 | |
---|
| 2376 | |
---|
[1027] | 2377 | CArray<int,1> dataIIndex(nbIndex), dataJIndex(nbIndex); |
---|
[1129] | 2378 | dataIIndex = -1; |
---|
| 2379 | dataJIndex = -1; |
---|
| 2380 | ind = 0; |
---|
| 2381 | |
---|
[1027] | 2382 | for (idx = 0; idx < data_i_index.numElements(); ++idx) |
---|
[1025] | 2383 | { |
---|
[1129] | 2384 | int dataIidx = data_i_index(idx) + data_ibegin; |
---|
| 2385 | int dataJidx = data_j_index(idx) + data_jbegin; |
---|
| 2386 | if ((0 <= dataIidx) && (dataIidx < dataIindexBound) && |
---|
| 2387 | (0 <= dataJidx) && (dataJidx < dataJindexBound)) |
---|
[1027] | 2388 | { |
---|
[1129] | 2389 | dataIIndex((1 == data_dim) ? dataIidx : dataJidx * ni + dataIidx) = 1; //i_index(dataIidx);//dataIidx; |
---|
| 2390 | dataJIndex((1 == data_dim) ? dataIidx : dataJidx * ni + dataIidx) = 1; //j_index(dataJidx);// |
---|
[1027] | 2391 | } |
---|
[1025] | 2392 | } |
---|
| 2393 | |
---|
[1542] | 2394 | std::unordered_map<int, vector<size_t> >::const_iterator it, iteMap; |
---|
[1337] | 2395 | iteMap = indSrv_[serverSize].end(); |
---|
| 2396 | for (int k = 0; k < connectedServerRank_[serverSize].size(); ++k) |
---|
[1027] | 2397 | { |
---|
| 2398 | int nbData = 0; |
---|
[1337] | 2399 | int rank = connectedServerRank_[serverSize][k]; |
---|
| 2400 | it = indSrv_[serverSize].find(rank); |
---|
[1027] | 2401 | if (iteMap != it) |
---|
| 2402 | nbData = it->second.size(); |
---|
| 2403 | list_data_i_index.push_back(CArray<int,1>(nbData)); |
---|
| 2404 | list_data_j_index.push_back(CArray<int,1>(nbData)); |
---|
[1025] | 2405 | |
---|
[1027] | 2406 | const std::vector<size_t>& temp = it->second; |
---|
| 2407 | for (n = 0; n < nbData; ++n) |
---|
| 2408 | { |
---|
| 2409 | idx = static_cast<int>(it->second[n]); |
---|
| 2410 | i = globalLocalIndexMap_[idx]; |
---|
| 2411 | list_data_i_index.back()(n) = dataIIndex(i); |
---|
| 2412 | list_data_j_index.back()(n) = dataJIndex(i); |
---|
| 2413 | } |
---|
| 2414 | |
---|
| 2415 | list_msgsDataIndex.push_back(CMessage()); |
---|
| 2416 | list_msgsDataIndex.back() << this->getId(); |
---|
| 2417 | list_msgsDataIndex.back() << list_data_i_index.back() << list_data_j_index.back(); |
---|
[1337] | 2418 | eventDataIndex.push(rank, nbSenders[serverSize][rank], list_msgsDataIndex.back()); |
---|
[1025] | 2419 | } |
---|
[1027] | 2420 | client->sendEvent(eventDataIndex); |
---|
[1025] | 2421 | } |
---|
[665] | 2422 | } |
---|
[1622] | 2423 | CATCH |
---|
[1025] | 2424 | |
---|
[300] | 2425 | bool CDomain::dispatchEvent(CEventServer& event) |
---|
[1622] | 2426 | TRY |
---|
[610] | 2427 | { |
---|
| 2428 | if (SuperClass::dispatchEvent(event)) return true; |
---|
| 2429 | else |
---|
| 2430 | { |
---|
| 2431 | switch(event.type) |
---|
[300] | 2432 | { |
---|
[610] | 2433 | case EVENT_ID_SERVER_ATTRIBUT: |
---|
[1025] | 2434 | recvDistributionAttributes(event); |
---|
[610] | 2435 | return true; |
---|
| 2436 | break; |
---|
| 2437 | case EVENT_ID_INDEX: |
---|
| 2438 | recvIndex(event); |
---|
| 2439 | return true; |
---|
| 2440 | break; |
---|
| 2441 | case EVENT_ID_LON: |
---|
| 2442 | recvLon(event); |
---|
| 2443 | return true; |
---|
| 2444 | break; |
---|
| 2445 | case EVENT_ID_LAT: |
---|
| 2446 | recvLat(event); |
---|
| 2447 | return true; |
---|
| 2448 | break; |
---|
[611] | 2449 | case EVENT_ID_AREA: |
---|
| 2450 | recvArea(event); |
---|
| 2451 | return true; |
---|
[1025] | 2452 | break; |
---|
| 2453 | case EVENT_ID_DATA_INDEX: |
---|
| 2454 | recvDataIndex(event); |
---|
| 2455 | return true; |
---|
[611] | 2456 | break; |
---|
[610] | 2457 | default: |
---|
[762] | 2458 | ERROR("bool CDomain::dispatchEvent(CEventServer& event)", |
---|
[610] | 2459 | << "Unknown Event"); |
---|
| 2460 | return false; |
---|
| 2461 | } |
---|
| 2462 | } |
---|
| 2463 | } |
---|
[1622] | 2464 | CATCH |
---|
[509] | 2465 | |
---|
[667] | 2466 | /*! |
---|
[1025] | 2467 | Receive index event from clients(s) |
---|
| 2468 | \param[in] event event contain info about rank and associated index |
---|
| 2469 | */ |
---|
| 2470 | void CDomain::recvIndex(CEventServer& event) |
---|
[1622] | 2471 | TRY |
---|
[1025] | 2472 | { |
---|
| 2473 | string domainId; |
---|
| 2474 | std::map<int, CBufferIn*> rankBuffers; |
---|
[821] | 2475 | |
---|
[1025] | 2476 | list<CEventServer::SSubEvent>::iterator it; |
---|
| 2477 | for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it) |
---|
| 2478 | { |
---|
| 2479 | CBufferIn* buffer = it->buffer; |
---|
| 2480 | *buffer >> domainId; |
---|
| 2481 | rankBuffers[it->rank] = buffer; |
---|
| 2482 | } |
---|
| 2483 | get(domainId)->recvIndex(rankBuffers); |
---|
| 2484 | } |
---|
[1622] | 2485 | CATCH |
---|
[300] | 2486 | |
---|
[1025] | 2487 | /*! |
---|
[1144] | 2488 | Receive index information from client(s). We use the global index for mapping index between |
---|
| 2489 | sending clients and receiving clients. |
---|
[1025] | 2490 | \param[in] rankBuffers rank of sending client and the corresponding receive buffer |
---|
| 2491 | */ |
---|
| 2492 | void CDomain::recvIndex(std::map<int, CBufferIn*>& rankBuffers) |
---|
[1622] | 2493 | TRY |
---|
[1025] | 2494 | { |
---|
[1249] | 2495 | int nbReceived = rankBuffers.size(), i, ind, index, type_int, iIndex, jIndex; |
---|
[1129] | 2496 | recvClientRanks_.resize(nbReceived); |
---|
[1025] | 2497 | |
---|
| 2498 | std::map<int, CBufferIn*>::iterator it = rankBuffers.begin(), ite = rankBuffers.end(); |
---|
| 2499 | ind = 0; |
---|
| 2500 | for (ind = 0; it != ite; ++it, ++ind) |
---|
| 2501 | { |
---|
| 2502 | recvClientRanks_[ind] = it->first; |
---|
| 2503 | CBufferIn& buffer = *(it->second); |
---|
[1129] | 2504 | buffer >> type_int >> isCurvilinear >> indGlob_[it->first]; |
---|
[1025] | 2505 | type.setValue((type_attr::t_enum)type_int); // probleme des type enum avec les buffers : ToFix |
---|
| 2506 | } |
---|
| 2507 | int nbIndGlob = 0; |
---|
| 2508 | for (i = 0; i < nbReceived; ++i) |
---|
[300] | 2509 | { |
---|
[1025] | 2510 | nbIndGlob += indGlob_[recvClientRanks_[i]].numElements(); |
---|
[300] | 2511 | } |
---|
[1025] | 2512 | |
---|
[1202] | 2513 | globalLocalIndexMap_.rehash(std::ceil(nbIndGlob/globalLocalIndexMap_.max_load_factor())); |
---|
[1201] | 2514 | i_index.resize(nbIndGlob); |
---|
[1249] | 2515 | j_index.resize(nbIndGlob); |
---|
| 2516 | int nbIndexGlobMax = nbIndGlob, nbIndLoc; |
---|
| 2517 | |
---|
[1025] | 2518 | nbIndGlob = 0; |
---|
| 2519 | for (i = 0; i < nbReceived; ++i) |
---|
[456] | 2520 | { |
---|
[1025] | 2521 | CArray<int,1>& tmp = indGlob_[recvClientRanks_[i]]; |
---|
| 2522 | for (ind = 0; ind < tmp.numElements(); ++ind) |
---|
| 2523 | { |
---|
| 2524 | index = tmp(ind); |
---|
[1202] | 2525 | if (0 == globalLocalIndexMap_.count(index)) |
---|
| 2526 | { |
---|
[1249] | 2527 | iIndex = (index%ni_glo)-ibegin; |
---|
| 2528 | iIndex = (iIndex < 0) ? 0 : iIndex; |
---|
| 2529 | jIndex = (index/ni_glo)-jbegin; |
---|
| 2530 | jIndex = (jIndex < 0) ? 0 : jIndex; |
---|
| 2531 | nbIndLoc = iIndex + ni * jIndex; |
---|
[1637] | 2532 | i_index(nbIndGlob) = index % ni_glo; |
---|
| 2533 | j_index(nbIndGlob) = index / ni_glo; |
---|
| 2534 | globalLocalIndexMap_[index] = nbIndGlob; |
---|
| 2535 | ++nbIndGlob; |
---|
[1202] | 2536 | } |
---|
[1025] | 2537 | } |
---|
[1144] | 2538 | } |
---|
[1202] | 2539 | |
---|
[1284] | 2540 | if (nbIndGlob==0) |
---|
| 2541 | { |
---|
| 2542 | i_index.resize(nbIndGlob); |
---|
| 2543 | j_index.resize(nbIndGlob); |
---|
| 2544 | } |
---|
| 2545 | else |
---|
| 2546 | { |
---|
| 2547 | i_index.resizeAndPreserve(nbIndGlob); |
---|
| 2548 | j_index.resizeAndPreserve(nbIndGlob); |
---|
| 2549 | } |
---|
[1637] | 2550 | |
---|
| 2551 | domainMask.resize(0); // Mask is not defined anymore on servers |
---|
[300] | 2552 | } |
---|
[1622] | 2553 | CATCH |
---|
[509] | 2554 | |
---|
[667] | 2555 | /*! |
---|
[1099] | 2556 | Receive attributes event from clients(s) |
---|
| 2557 | \param[in] event event contain info about rank and associated attributes |
---|
| 2558 | */ |
---|
| 2559 | void CDomain::recvDistributionAttributes(CEventServer& event) |
---|
[1622] | 2560 | TRY |
---|
[1099] | 2561 | { |
---|
| 2562 | CBufferIn* buffer=event.subEvents.begin()->buffer; |
---|
| 2563 | string domainId ; |
---|
| 2564 | *buffer>>domainId ; |
---|
| 2565 | get(domainId)->recvDistributionAttributes(*buffer); |
---|
| 2566 | } |
---|
[1622] | 2567 | CATCH |
---|
[1099] | 2568 | |
---|
| 2569 | /*! |
---|
[1553] | 2570 | Receive attributes from client(s) |
---|
[1099] | 2571 | \param[in] rank rank of client source |
---|
| 2572 | \param[in] buffer message containing attributes info |
---|
| 2573 | */ |
---|
| 2574 | void CDomain::recvDistributionAttributes(CBufferIn& buffer) |
---|
[1622] | 2575 | TRY |
---|
[1099] | 2576 | { |
---|
| 2577 | int ni_tmp, ibegin_tmp, nj_tmp, jbegin_tmp; |
---|
[1553] | 2578 | int ni_glo_tmp, nj_glo_tmp; |
---|
[1364] | 2579 | buffer >> isUnstructed_ >> ni_tmp >> ibegin_tmp >> nj_tmp >> jbegin_tmp |
---|
[1553] | 2580 | >> ni_glo_tmp >> nj_glo_tmp |
---|
[1099] | 2581 | >> isCompressible_; |
---|
[1553] | 2582 | |
---|
[1099] | 2583 | ni.setValue(ni_tmp); |
---|
| 2584 | ibegin.setValue(ibegin_tmp); |
---|
| 2585 | nj.setValue(nj_tmp); |
---|
| 2586 | jbegin.setValue(jbegin_tmp); |
---|
[1553] | 2587 | ni_glo.setValue(ni_glo_tmp); |
---|
| 2588 | nj_glo.setValue(nj_glo_tmp); |
---|
[1099] | 2589 | |
---|
| 2590 | } |
---|
[1637] | 2591 | CATCH_DUMP_ATTR |
---|
[1099] | 2592 | /*! |
---|
[667] | 2593 | Receive longitude event from clients(s) |
---|
| 2594 | \param[in] event event contain info about rank and associated longitude |
---|
| 2595 | */ |
---|
[518] | 2596 | void CDomain::recvLon(CEventServer& event) |
---|
[1622] | 2597 | TRY |
---|
[300] | 2598 | { |
---|
[1025] | 2599 | string domainId; |
---|
| 2600 | std::map<int, CBufferIn*> rankBuffers; |
---|
| 2601 | |
---|
[610] | 2602 | list<CEventServer::SSubEvent>::iterator it; |
---|
| 2603 | for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it) |
---|
[1025] | 2604 | { |
---|
[610] | 2605 | CBufferIn* buffer = it->buffer; |
---|
| 2606 | *buffer >> domainId; |
---|
[1025] | 2607 | rankBuffers[it->rank] = buffer; |
---|
[300] | 2608 | } |
---|
[1025] | 2609 | get(domainId)->recvLon(rankBuffers); |
---|
[300] | 2610 | } |
---|
[1622] | 2611 | CATCH |
---|
[509] | 2612 | |
---|
[667] | 2613 | /*! |
---|
| 2614 | Receive longitude information from client(s) |
---|
[1025] | 2615 | \param[in] rankBuffers rank of sending client and the corresponding receive buffer |
---|
[667] | 2616 | */ |
---|
[1025] | 2617 | void CDomain::recvLon(std::map<int, CBufferIn*>& rankBuffers) |
---|
[1622] | 2618 | TRY |
---|
[300] | 2619 | { |
---|
[1129] | 2620 | int nbReceived = rankBuffers.size(), i, ind, index, iindex, jindex, lInd; |
---|
[1025] | 2621 | if (nbReceived != recvClientRanks_.size()) |
---|
| 2622 | ERROR("void CDomain::recvLon(std::map<int, CBufferIn*>& rankBuffers)", |
---|
| 2623 | << "The number of sending clients is not correct." |
---|
| 2624 | << "Expected number: " << recvClientRanks_.size() << " but received " << nbReceived); |
---|
[518] | 2625 | |
---|
[1025] | 2626 | vector<CArray<double,1> > recvLonValue(nbReceived); |
---|
| 2627 | vector<CArray<double,2> > recvBoundsLonValue(nbReceived); |
---|
| 2628 | for (i = 0; i < recvClientRanks_.size(); ++i) |
---|
| 2629 | { |
---|
| 2630 | int rank = recvClientRanks_[i]; |
---|
| 2631 | CBufferIn& buffer = *(rankBuffers[rank]); |
---|
| 2632 | buffer >> hasLonLat; |
---|
[1129] | 2633 | if (hasLonLat) |
---|
| 2634 | buffer >> recvLonValue[i]; |
---|
[1025] | 2635 | buffer >> hasBounds; |
---|
| 2636 | if (hasBounds) |
---|
| 2637 | buffer >> recvBoundsLonValue[i]; |
---|
| 2638 | } |
---|
[924] | 2639 | |
---|
[1129] | 2640 | if (hasLonLat) |
---|
[518] | 2641 | { |
---|
[1129] | 2642 | int nbLonInd = 0; |
---|
| 2643 | for (i = 0; i < nbReceived; ++i) |
---|
| 2644 | { |
---|
| 2645 | nbLonInd += recvLonValue[i].numElements(); |
---|
| 2646 | } |
---|
[1099] | 2647 | |
---|
[1129] | 2648 | if (nbLonInd != globalLocalIndexMap_.size()) |
---|
[1509] | 2649 | info (0) << "If domain " << this->getDomainOutputName() <<" does not have overlapped regions between processes " |
---|
| 2650 | << "something must be wrong with longitude index "<< std::endl; |
---|
[1129] | 2651 | |
---|
[1202] | 2652 | nbLonInd = globalLocalIndexMap_.size(); |
---|
[1129] | 2653 | lonvalue.resize(nbLonInd); |
---|
| 2654 | if (hasBounds) |
---|
[518] | 2655 | { |
---|
[1129] | 2656 | bounds_lonvalue.resize(nvertex,nbLonInd); |
---|
| 2657 | bounds_lonvalue = 0.; |
---|
[518] | 2658 | } |
---|
[1129] | 2659 | |
---|
| 2660 | nbLonInd = 0; |
---|
| 2661 | for (i = 0; i < nbReceived; ++i) |
---|
| 2662 | { |
---|
| 2663 | CArray<int,1>& tmpInd = indGlob_[recvClientRanks_[i]]; |
---|
| 2664 | CArray<double,1>& tmp = recvLonValue[i]; |
---|
| 2665 | for (ind = 0; ind < tmp.numElements(); ++ind) |
---|
| 2666 | { |
---|
| 2667 | lInd = globalLocalIndexMap_[size_t(tmpInd(ind))]; |
---|
| 2668 | lonvalue(lInd) = tmp(ind); |
---|
| 2669 | if (hasBounds) |
---|
| 2670 | { |
---|
| 2671 | for (int nv = 0; nv < nvertex; ++nv) |
---|
| 2672 | bounds_lonvalue(nv, lInd) = recvBoundsLonValue[i](nv, ind); |
---|
| 2673 | } |
---|
| 2674 | } |
---|
| 2675 | } |
---|
[518] | 2676 | } |
---|
| 2677 | } |
---|
[1622] | 2678 | CATCH_DUMP_ATTR |
---|
[518] | 2679 | |
---|
[667] | 2680 | /*! |
---|
| 2681 | Receive latitude event from clients(s) |
---|
| 2682 | \param[in] event event contain info about rank and associated latitude |
---|
| 2683 | */ |
---|
[518] | 2684 | void CDomain::recvLat(CEventServer& event) |
---|
[1622] | 2685 | TRY |
---|
[518] | 2686 | { |
---|
[1025] | 2687 | string domainId; |
---|
| 2688 | std::map<int, CBufferIn*> rankBuffers; |
---|
| 2689 | |
---|
[610] | 2690 | list<CEventServer::SSubEvent>::iterator it; |
---|
| 2691 | for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it) |
---|
[1025] | 2692 | { |
---|
[610] | 2693 | CBufferIn* buffer = it->buffer; |
---|
| 2694 | *buffer >> domainId; |
---|
[1025] | 2695 | rankBuffers[it->rank] = buffer; |
---|
[518] | 2696 | } |
---|
[1025] | 2697 | get(domainId)->recvLat(rankBuffers); |
---|
[518] | 2698 | } |
---|
[1622] | 2699 | CATCH |
---|
[518] | 2700 | |
---|
[667] | 2701 | /*! |
---|
| 2702 | Receive latitude information from client(s) |
---|
[1025] | 2703 | \param[in] rankBuffers rank of sending client and the corresponding receive buffer |
---|
[667] | 2704 | */ |
---|
[1025] | 2705 | void CDomain::recvLat(std::map<int, CBufferIn*>& rankBuffers) |
---|
[1622] | 2706 | TRY |
---|
[518] | 2707 | { |
---|
[1129] | 2708 | int nbReceived = rankBuffers.size(), i, ind, index, iindex, jindex, lInd; |
---|
[1025] | 2709 | if (nbReceived != recvClientRanks_.size()) |
---|
| 2710 | ERROR("void CDomain::recvLat(std::map<int, CBufferIn*>& rankBuffers)", |
---|
| 2711 | << "The number of sending clients is not correct." |
---|
| 2712 | << "Expected number: " << recvClientRanks_.size() << " but received " << nbReceived); |
---|
[509] | 2713 | |
---|
[1025] | 2714 | vector<CArray<double,1> > recvLatValue(nbReceived); |
---|
| 2715 | vector<CArray<double,2> > recvBoundsLatValue(nbReceived); |
---|
| 2716 | for (i = 0; i < recvClientRanks_.size(); ++i) |
---|
| 2717 | { |
---|
| 2718 | int rank = recvClientRanks_[i]; |
---|
| 2719 | CBufferIn& buffer = *(rankBuffers[rank]); |
---|
| 2720 | buffer >> hasLonLat; |
---|
[1129] | 2721 | if (hasLonLat) |
---|
| 2722 | buffer >> recvLatValue[i]; |
---|
[1025] | 2723 | buffer >> hasBounds; |
---|
| 2724 | if (hasBounds) |
---|
| 2725 | buffer >> recvBoundsLatValue[i]; |
---|
| 2726 | } |
---|
[610] | 2727 | |
---|
[1129] | 2728 | if (hasLonLat) |
---|
[1025] | 2729 | { |
---|
[1129] | 2730 | int nbLatInd = 0; |
---|
| 2731 | for (i = 0; i < nbReceived; ++i) |
---|
| 2732 | { |
---|
| 2733 | nbLatInd += recvLatValue[i].numElements(); |
---|
| 2734 | } |
---|
[1025] | 2735 | |
---|
[1129] | 2736 | if (nbLatInd != globalLocalIndexMap_.size()) |
---|
[1509] | 2737 | info (0) << "If domain " << this->getDomainOutputName() <<" does not have overlapped regions between processes " |
---|
| 2738 | << "something must be wrong with latitude index "<< std::endl; |
---|
[1129] | 2739 | |
---|
[1202] | 2740 | nbLatInd = globalLocalIndexMap_.size(); |
---|
[1129] | 2741 | latvalue.resize(nbLatInd); |
---|
| 2742 | if (hasBounds) |
---|
[1099] | 2743 | { |
---|
[1129] | 2744 | bounds_latvalue.resize(nvertex,nbLatInd); |
---|
| 2745 | bounds_latvalue = 0. ; |
---|
[449] | 2746 | } |
---|
[1129] | 2747 | |
---|
| 2748 | nbLatInd = 0; |
---|
| 2749 | for (i = 0; i < nbReceived; ++i) |
---|
| 2750 | { |
---|
| 2751 | CArray<int,1>& tmpInd = indGlob_[recvClientRanks_[i]]; |
---|
| 2752 | CArray<double,1>& tmp = recvLatValue[i]; |
---|
| 2753 | for (ind = 0; ind < tmp.numElements(); ++ind) |
---|
| 2754 | { |
---|
| 2755 | lInd = globalLocalIndexMap_[size_t(tmpInd(ind))]; |
---|
| 2756 | latvalue(lInd) = tmp(ind); |
---|
| 2757 | if (hasBounds) |
---|
| 2758 | { |
---|
| 2759 | CArray<double,2>& boundslat = recvBoundsLatValue[i]; |
---|
| 2760 | for (int nv = 0; nv < nvertex; ++nv) |
---|
| 2761 | bounds_latvalue(nv, lInd) = boundslat(nv, ind); |
---|
| 2762 | } |
---|
| 2763 | ++nbLatInd; |
---|
| 2764 | } |
---|
| 2765 | } |
---|
[300] | 2766 | } |
---|
| 2767 | } |
---|
[1622] | 2768 | CATCH_DUMP_ATTR |
---|
[553] | 2769 | |
---|
[667] | 2770 | /*! |
---|
| 2771 | Receive area event from clients(s) |
---|
| 2772 | \param[in] event event contain info about rank and associated area |
---|
| 2773 | */ |
---|
[611] | 2774 | void CDomain::recvArea(CEventServer& event) |
---|
[1622] | 2775 | TRY |
---|
[611] | 2776 | { |
---|
[1025] | 2777 | string domainId; |
---|
| 2778 | std::map<int, CBufferIn*> rankBuffers; |
---|
| 2779 | |
---|
[611] | 2780 | list<CEventServer::SSubEvent>::iterator it; |
---|
| 2781 | for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it) |
---|
[1025] | 2782 | { |
---|
[611] | 2783 | CBufferIn* buffer = it->buffer; |
---|
| 2784 | *buffer >> domainId; |
---|
[1025] | 2785 | rankBuffers[it->rank] = buffer; |
---|
[611] | 2786 | } |
---|
[1025] | 2787 | get(domainId)->recvArea(rankBuffers); |
---|
[611] | 2788 | } |
---|
[1622] | 2789 | CATCH |
---|
[611] | 2790 | |
---|
[667] | 2791 | /*! |
---|
| 2792 | Receive area information from client(s) |
---|
[1025] | 2793 | \param[in] rankBuffers rank of sending client and the corresponding receive buffer |
---|
[667] | 2794 | */ |
---|
[1025] | 2795 | void CDomain::recvArea(std::map<int, CBufferIn*>& rankBuffers) |
---|
[1622] | 2796 | TRY |
---|
[611] | 2797 | { |
---|
[1129] | 2798 | int nbReceived = rankBuffers.size(), i, ind, index, lInd; |
---|
[1025] | 2799 | if (nbReceived != recvClientRanks_.size()) |
---|
| 2800 | ERROR("void CDomain::recvArea(std::map<int, CBufferIn*>& rankBuffers)", |
---|
| 2801 | << "The number of sending clients is not correct." |
---|
| 2802 | << "Expected number: " << recvClientRanks_.size() << " but received " << nbReceived); |
---|
[611] | 2803 | |
---|
[1025] | 2804 | vector<CArray<double,1> > recvAreaValue(nbReceived); |
---|
| 2805 | for (i = 0; i < recvClientRanks_.size(); ++i) |
---|
| 2806 | { |
---|
| 2807 | int rank = recvClientRanks_[i]; |
---|
| 2808 | CBufferIn& buffer = *(rankBuffers[rank]); |
---|
| 2809 | buffer >> hasArea; |
---|
| 2810 | if (hasArea) |
---|
| 2811 | buffer >> recvAreaValue[i]; |
---|
| 2812 | } |
---|
[611] | 2813 | |
---|
[1025] | 2814 | if (hasArea) |
---|
| 2815 | { |
---|
[1202] | 2816 | int nbAreaInd = 0; |
---|
| 2817 | for (i = 0; i < nbReceived; ++i) |
---|
| 2818 | { |
---|
| 2819 | nbAreaInd += recvAreaValue[i].numElements(); |
---|
| 2820 | } |
---|
| 2821 | |
---|
| 2822 | if (nbAreaInd != globalLocalIndexMap_.size()) |
---|
[1509] | 2823 | info (0) << "If domain " << this->getDomainOutputName() <<" does not have overlapped regions between processes " |
---|
| 2824 | << "something must be wrong with area index "<< std::endl; |
---|
[1202] | 2825 | |
---|
| 2826 | nbAreaInd = globalLocalIndexMap_.size(); |
---|
[1129] | 2827 | areavalue.resize(nbAreaInd); |
---|
| 2828 | nbAreaInd = 0; |
---|
[1025] | 2829 | for (i = 0; i < nbReceived; ++i) |
---|
| 2830 | { |
---|
[1129] | 2831 | CArray<int,1>& tmpInd = indGlob_[recvClientRanks_[i]]; |
---|
[1025] | 2832 | CArray<double,1>& tmp = recvAreaValue[i]; |
---|
| 2833 | for (ind = 0; ind < tmp.numElements(); ++ind) |
---|
| 2834 | { |
---|
[1129] | 2835 | lInd = globalLocalIndexMap_[size_t(tmpInd(ind))]; |
---|
| 2836 | areavalue(lInd) = tmp(ind); |
---|
[1025] | 2837 | } |
---|
| 2838 | } |
---|
[1129] | 2839 | |
---|
[1025] | 2840 | } |
---|
[611] | 2841 | } |
---|
[1622] | 2842 | CATCH_DUMP_ATTR |
---|
[611] | 2843 | |
---|
[1025] | 2844 | /*! |
---|
[1158] | 2845 | Compare two domain objects. |
---|
| 2846 | They are equal if only if they have identical attributes as well as their values. |
---|
| 2847 | Moreover, they must have the same transformations. |
---|
| 2848 | \param [in] domain Compared domain |
---|
| 2849 | \return result of the comparison |
---|
| 2850 | */ |
---|
| 2851 | bool CDomain::isEqual(CDomain* obj) |
---|
[1622] | 2852 | TRY |
---|
[1158] | 2853 | { |
---|
| 2854 | vector<StdString> excludedAttr; |
---|
| 2855 | excludedAttr.push_back("domain_ref"); |
---|
| 2856 | bool objEqual = SuperClass::isEqual(obj, excludedAttr); |
---|
| 2857 | if (!objEqual) return objEqual; |
---|
| 2858 | |
---|
| 2859 | TransMapTypes thisTrans = this->getAllTransformations(); |
---|
| 2860 | TransMapTypes objTrans = obj->getAllTransformations(); |
---|
| 2861 | |
---|
| 2862 | TransMapTypes::const_iterator it, itb, ite; |
---|
| 2863 | std::vector<ETranformationType> thisTransType, objTransType; |
---|
| 2864 | for (it = thisTrans.begin(); it != thisTrans.end(); ++it) |
---|
| 2865 | thisTransType.push_back(it->first); |
---|
| 2866 | for (it = objTrans.begin(); it != objTrans.end(); ++it) |
---|
| 2867 | objTransType.push_back(it->first); |
---|
| 2868 | |
---|
| 2869 | if (thisTransType.size() != objTransType.size()) return false; |
---|
| 2870 | for (int idx = 0; idx < thisTransType.size(); ++idx) |
---|
| 2871 | objEqual &= (thisTransType[idx] == objTransType[idx]); |
---|
| 2872 | |
---|
| 2873 | return objEqual; |
---|
| 2874 | } |
---|
[1622] | 2875 | CATCH_DUMP_ATTR |
---|
[1158] | 2876 | |
---|
| 2877 | /*! |
---|
[1025] | 2878 | Receive data index event from clients(s) |
---|
| 2879 | \param[in] event event contain info about rank and associated index |
---|
| 2880 | */ |
---|
| 2881 | void CDomain::recvDataIndex(CEventServer& event) |
---|
[1622] | 2882 | TRY |
---|
[1025] | 2883 | { |
---|
| 2884 | string domainId; |
---|
| 2885 | std::map<int, CBufferIn*> rankBuffers; |
---|
| 2886 | |
---|
| 2887 | list<CEventServer::SSubEvent>::iterator it; |
---|
| 2888 | for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it) |
---|
| 2889 | { |
---|
| 2890 | CBufferIn* buffer = it->buffer; |
---|
| 2891 | *buffer >> domainId; |
---|
| 2892 | rankBuffers[it->rank] = buffer; |
---|
| 2893 | } |
---|
| 2894 | get(domainId)->recvDataIndex(rankBuffers); |
---|
| 2895 | } |
---|
[1622] | 2896 | CATCH |
---|
[1025] | 2897 | |
---|
| 2898 | /*! |
---|
| 2899 | Receive data index information from client(s) |
---|
| 2900 | A client receives data index from different clients to rebuild its own data index. |
---|
[1249] | 2901 | Because we use global index + mask info to calculate the sending data to client(s), |
---|
| 2902 | this data index must be updated with mask info (maybe it will change in the future) |
---|
[1025] | 2903 | Because the data index is local, to rebuild data index of received client, we should use global index along with. |
---|
[1249] | 2904 | |
---|
[1025] | 2905 | \param[in] rankBuffers rank of sending client and the corresponding receive buffer |
---|
| 2906 | */ |
---|
| 2907 | void CDomain::recvDataIndex(std::map<int, CBufferIn*>& rankBuffers) |
---|
[1622] | 2908 | TRY |
---|
[1025] | 2909 | { |
---|
[1129] | 2910 | int nbReceived = rankBuffers.size(), i, ind, index, indexI, indexJ, type_int, lInd; |
---|
[1025] | 2911 | if (nbReceived != recvClientRanks_.size()) |
---|
[1129] | 2912 | ERROR("void CDomain::recvDataIndex(std::map<int, CBufferIn*>& rankBuffers)", |
---|
[1025] | 2913 | << "The number of sending clients is not correct." |
---|
| 2914 | << "Expected number: " << recvClientRanks_.size() << " but received " << nbReceived); |
---|
| 2915 | |
---|
| 2916 | vector<CArray<int,1> > recvDataIIndex(nbReceived),recvDataJIndex(nbReceived); |
---|
| 2917 | for (i = 0; i < recvClientRanks_.size(); ++i) |
---|
| 2918 | { |
---|
| 2919 | int rank = recvClientRanks_[i]; |
---|
| 2920 | CBufferIn& buffer = *(rankBuffers[rank]); |
---|
| 2921 | buffer >> recvDataIIndex[i]; |
---|
| 2922 | buffer >> recvDataJIndex[i]; |
---|
| 2923 | } |
---|
| 2924 | |
---|
[1129] | 2925 | int nbIndex = i_index.numElements(); |
---|
| 2926 | CArray<int,1> dataIIndex(nbIndex), dataJIndex(nbIndex); |
---|
| 2927 | dataIIndex = -1; dataJIndex = -1; |
---|
[1143] | 2928 | |
---|
[1129] | 2929 | nbIndex = 0; |
---|
[1025] | 2930 | for (i = 0; i < nbReceived; ++i) |
---|
[1129] | 2931 | { |
---|
| 2932 | CArray<int,1>& tmpInd = indGlob_[recvClientRanks_[i]]; |
---|
| 2933 | CArray<int,1>& tmpI = recvDataIIndex[i]; |
---|
| 2934 | CArray<int,1>& tmpJ = recvDataJIndex[i]; |
---|
| 2935 | if ((tmpI.numElements() != tmpInd.numElements()) || (tmpJ.numElements() != tmpInd.numElements())) |
---|
| 2936 | ERROR("void CDomain::recvDataIndex(std::map<int, CBufferIn*>& rankBuffers)", |
---|
| 2937 | << "The number of global received index is not coherent with the number of received data index." |
---|
| 2938 | << "Expected number of global index: " << tmpI.numElements() << " but received " << tmpInd.numElements()); |
---|
| 2939 | |
---|
| 2940 | for (ind = 0; ind < tmpI.numElements(); ++ind) |
---|
[1025] | 2941 | { |
---|
[1129] | 2942 | lInd = globalLocalIndexMap_[size_t(tmpInd(ind))]; |
---|
[1202] | 2943 | dataIIndex(lInd) = (-1 == dataIIndex(lInd)) ? tmpI(ind) : dataIIndex(lInd); // Only fill in dataIndex if there is no data |
---|
[1249] | 2944 | dataJIndex(lInd) = (-1 == dataJIndex(lInd)) ? tmpJ(ind) : dataJIndex(lInd); |
---|
[1129] | 2945 | } |
---|
[1025] | 2946 | } |
---|
| 2947 | |
---|
[1129] | 2948 | int nbCompressedData = 0; |
---|
| 2949 | for (ind = 0; ind < dataIIndex.numElements(); ++ind) |
---|
| 2950 | { |
---|
| 2951 | indexI = dataIIndex(ind); indexJ = dataJIndex(ind); |
---|
| 2952 | if ((0 <= indexI) && (0 <= indexJ)) |
---|
| 2953 | ++nbCompressedData; |
---|
| 2954 | } |
---|
| 2955 | |
---|
[1025] | 2956 | data_i_index.resize(nbCompressedData); |
---|
| 2957 | data_j_index.resize(nbCompressedData); |
---|
| 2958 | |
---|
[1129] | 2959 | nbCompressedData = 0; |
---|
| 2960 | for (ind = 0; ind < dataIIndex.numElements(); ++ind) |
---|
[1025] | 2961 | { |
---|
[1129] | 2962 | indexI = dataIIndex(ind); indexJ = dataJIndex(ind); |
---|
| 2963 | if ((0 <= indexI) && (0 <= indexJ)) |
---|
| 2964 | { |
---|
[1130] | 2965 | data_i_index(nbCompressedData) = (1 == data_dim) ? ind : ind % ni; |
---|
| 2966 | data_j_index(nbCompressedData) = (1 == data_dim) ? 0 : ind / ni; |
---|
[1129] | 2967 | ++nbCompressedData; |
---|
| 2968 | } |
---|
[1025] | 2969 | } |
---|
[1129] | 2970 | |
---|
| 2971 | // Reset data_ibegin, data_jbegin |
---|
| 2972 | data_ibegin.setValue(0); |
---|
| 2973 | data_jbegin.setValue(0); |
---|
[1025] | 2974 | } |
---|
[1622] | 2975 | CATCH_DUMP_ATTR |
---|
[1025] | 2976 | |
---|
[836] | 2977 | CTransformation<CDomain>* CDomain::addTransformation(ETranformationType transType, const StdString& id) |
---|
[1622] | 2978 | TRY |
---|
[836] | 2979 | { |
---|
| 2980 | transformationMap_.push_back(std::make_pair(transType, CTransformation<CDomain>::createTransformation(transType,id))); |
---|
| 2981 | return transformationMap_.back().second; |
---|
| 2982 | } |
---|
[1622] | 2983 | CATCH_DUMP_ATTR |
---|
[836] | 2984 | |
---|
[667] | 2985 | /*! |
---|
| 2986 | Check whether a domain has transformation |
---|
| 2987 | \return true if domain has transformation |
---|
| 2988 | */ |
---|
[631] | 2989 | bool CDomain::hasTransformation() |
---|
[1622] | 2990 | TRY |
---|
[631] | 2991 | { |
---|
| 2992 | return (!transformationMap_.empty()); |
---|
| 2993 | } |
---|
[1622] | 2994 | CATCH_DUMP_ATTR |
---|
[631] | 2995 | |
---|
[667] | 2996 | /*! |
---|
| 2997 | Set transformation for current domain. It's the method to move transformation in hierarchy |
---|
| 2998 | \param [in] domTrans transformation on domain |
---|
| 2999 | */ |
---|
[631] | 3000 | void CDomain::setTransformations(const TransMapTypes& domTrans) |
---|
[1622] | 3001 | TRY |
---|
[631] | 3002 | { |
---|
| 3003 | transformationMap_ = domTrans; |
---|
| 3004 | } |
---|
[1622] | 3005 | CATCH_DUMP_ATTR |
---|
[631] | 3006 | |
---|
[667] | 3007 | /*! |
---|
| 3008 | Get all transformation current domain has |
---|
| 3009 | \return all transformation |
---|
| 3010 | */ |
---|
[631] | 3011 | CDomain::TransMapTypes CDomain::getAllTransformations(void) |
---|
[1622] | 3012 | TRY |
---|
[631] | 3013 | { |
---|
| 3014 | return transformationMap_; |
---|
| 3015 | } |
---|
[1622] | 3016 | CATCH_DUMP_ATTR |
---|
[631] | 3017 | |
---|
[823] | 3018 | void CDomain::duplicateTransformation(CDomain* src) |
---|
[1622] | 3019 | TRY |
---|
[823] | 3020 | { |
---|
| 3021 | if (src->hasTransformation()) |
---|
| 3022 | { |
---|
| 3023 | this->setTransformations(src->getAllTransformations()); |
---|
| 3024 | } |
---|
| 3025 | } |
---|
[1622] | 3026 | CATCH_DUMP_ATTR |
---|
[823] | 3027 | |
---|
[667] | 3028 | /*! |
---|
[747] | 3029 | * Go through the hierarchy to find the domain from which the transformations must be inherited |
---|
| 3030 | */ |
---|
[631] | 3031 | void CDomain::solveInheritanceTransformation() |
---|
[1622] | 3032 | TRY |
---|
[631] | 3033 | { |
---|
[747] | 3034 | if (hasTransformation() || !hasDirectDomainReference()) |
---|
| 3035 | return; |
---|
[631] | 3036 | |
---|
[747] | 3037 | CDomain* domain = this; |
---|
| 3038 | std::vector<CDomain*> refDomains; |
---|
| 3039 | while (!domain->hasTransformation() && domain->hasDirectDomainReference()) |
---|
[631] | 3040 | { |
---|
[747] | 3041 | refDomains.push_back(domain); |
---|
| 3042 | domain = domain->getDirectDomainReference(); |
---|
[631] | 3043 | } |
---|
| 3044 | |
---|
[747] | 3045 | if (domain->hasTransformation()) |
---|
| 3046 | for (size_t i = 0; i < refDomains.size(); ++i) |
---|
| 3047 | refDomains[i]->setTransformations(domain->getAllTransformations()); |
---|
[631] | 3048 | } |
---|
[1622] | 3049 | CATCH_DUMP_ATTR |
---|
[631] | 3050 | |
---|
[1345] | 3051 | void CDomain::setContextClient(CContextClient* contextClient) |
---|
[1622] | 3052 | TRY |
---|
[1345] | 3053 | { |
---|
[1353] | 3054 | if (clientsSet.find(contextClient)==clientsSet.end()) |
---|
| 3055 | { |
---|
| 3056 | clients.push_back(contextClient) ; |
---|
| 3057 | clientsSet.insert(contextClient); |
---|
| 3058 | } |
---|
[1345] | 3059 | } |
---|
[1622] | 3060 | CATCH_DUMP_ATTR |
---|
[1345] | 3061 | |
---|
[667] | 3062 | /*! |
---|
| 3063 | Parse children nodes of a domain in xml file. |
---|
| 3064 | Whenver there is a new transformation, its type and name should be added into this function |
---|
| 3065 | \param node child node to process |
---|
| 3066 | */ |
---|
[631] | 3067 | void CDomain::parse(xml::CXMLNode & node) |
---|
[1622] | 3068 | TRY |
---|
[631] | 3069 | { |
---|
| 3070 | SuperClass::parse(node); |
---|
| 3071 | |
---|
| 3072 | if (node.goToChildElement()) |
---|
| 3073 | { |
---|
[836] | 3074 | StdString nodeElementName; |
---|
[631] | 3075 | do |
---|
| 3076 | { |
---|
[784] | 3077 | StdString nodeId(""); |
---|
| 3078 | if (node.getAttributes().end() != node.getAttributes().find("id")) |
---|
| 3079 | { nodeId = node.getAttributes()["id"]; } |
---|
| 3080 | |
---|
[836] | 3081 | nodeElementName = node.getElementName(); |
---|
| 3082 | std::map<StdString, ETranformationType>::const_iterator ite = transformationMapList_.end(), it; |
---|
| 3083 | it = transformationMapList_.find(nodeElementName); |
---|
| 3084 | if (ite != it) |
---|
[657] | 3085 | { |
---|
[836] | 3086 | transformationMap_.push_back(std::make_pair(it->second, CTransformation<CDomain>::createTransformation(it->second, |
---|
| 3087 | nodeId, |
---|
| 3088 | &node))); |
---|
[657] | 3089 | } |
---|
[968] | 3090 | else |
---|
| 3091 | { |
---|
| 3092 | ERROR("void CDomain::parse(xml::CXMLNode & node)", |
---|
| 3093 | << "The transformation " << nodeElementName << " has not been supported yet."); |
---|
| 3094 | } |
---|
[631] | 3095 | } while (node.goToNextElement()) ; |
---|
| 3096 | node.goToParentElement(); |
---|
| 3097 | } |
---|
| 3098 | } |
---|
[1622] | 3099 | CATCH_DUMP_ATTR |
---|
[219] | 3100 | //---------------------------------------------------------------- |
---|
[509] | 3101 | |
---|
[540] | 3102 | DEFINE_REF_FUNC(Domain,domain) |
---|
[509] | 3103 | |
---|
[219] | 3104 | ///--------------------------------------------------------------- |
---|
| 3105 | |
---|
[335] | 3106 | } // namespace xios |
---|