[266] | 1 | |
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[219] | 2 | #include "nc4_data_output.hpp" |
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| 3 | |
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| 4 | #include <boost/lexical_cast.hpp> |
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[352] | 5 | #include "attribute_template.hpp" |
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| 6 | #include "group_template.hpp" |
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[219] | 7 | |
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| 8 | #include "file.hpp" |
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| 9 | #include "calendar.hpp" |
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[278] | 10 | #include "context.hpp" |
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[300] | 11 | #include "context_server.hpp" |
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[498] | 12 | #include "netCdfException.hpp" |
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| 13 | #include "exception.hpp" |
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[219] | 14 | |
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[335] | 15 | namespace xios |
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[219] | 16 | { |
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| 17 | /// ////////////////////// Définitions ////////////////////// /// |
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| 18 | CNc4DataOutput::CNc4DataOutput |
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| 19 | (const StdString & filename, bool exist) |
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| 20 | : SuperClass() |
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| 21 | , SuperClassWriter(filename, exist) |
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| 22 | , filename(filename) |
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| 23 | { |
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| 24 | StdString timeid = StdString("time_counter"); |
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| 25 | SuperClass::type = MULTI_FILE; |
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| 26 | } |
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| 27 | |
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| 28 | CNc4DataOutput::CNc4DataOutput |
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[517] | 29 | (const StdString & filename, bool exist, bool useClassicFormat, |
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| 30 | MPI_Comm comm_file,bool multifile, bool isCollective) |
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[219] | 31 | : SuperClass() |
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[517] | 32 | , SuperClassWriter(filename, exist, useClassicFormat, &comm_file, multifile) |
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[379] | 33 | , comm_file(comm_file) |
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[219] | 34 | , filename(filename) |
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[335] | 35 | , isCollective(isCollective) |
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[219] | 36 | { |
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| 37 | StdString timeid = StdString("time_counter"); |
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| 38 | |
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[286] | 39 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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[219] | 40 | } |
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| 41 | |
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[286] | 42 | |
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[219] | 43 | CNc4DataOutput::~CNc4DataOutput(void) |
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| 44 | { /* Ne rien faire de plus */ } |
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| 45 | |
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| 46 | ///-------------------------------------------------------------- |
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| 47 | |
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| 48 | const StdString & CNc4DataOutput::getFileName(void) const |
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| 49 | { |
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| 50 | return (this->filename); |
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| 51 | } |
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| 52 | |
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| 53 | //--------------------------------------------------------------- |
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| 54 | |
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[347] | 55 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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[219] | 56 | { |
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[449] | 57 | if (domain->type == CDomain::type_attr::unstructured) |
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| 58 | { |
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| 59 | writeUnstructuredDomain(domain) ; |
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| 60 | return ; |
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| 61 | } |
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[488] | 62 | |
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[347] | 63 | CContext* context = CContext::getCurrent() ; |
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[300] | 64 | CContextServer* server=context->server ; |
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[488] | 65 | |
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[219] | 66 | if (domain->IsWritten(this->filename)) return; |
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| 67 | domain->checkAttributes(); |
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[488] | 68 | |
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| 69 | if (domain->isEmpty()) |
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[300] | 70 | if (SuperClass::type==MULTI_FILE) return ; |
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[219] | 71 | |
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| 72 | std::vector<StdString> dim0, dim1; |
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[772] | 73 | StdString domid = domain->getDomainOutputName(); |
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[318] | 74 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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[706] | 75 | if (isWrittenDomain(domid)) return ; |
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[774] | 76 | else setWrittenDomain(domid); |
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[449] | 77 | |
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| 78 | |
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| 79 | StdString dimXid, dimYid ; |
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[488] | 80 | |
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[664] | 81 | bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear); |
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[449] | 82 | switch (domain->type) |
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[433] | 83 | { |
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[449] | 84 | case CDomain::type_attr::curvilinear : |
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| 85 | dimXid = StdString("x").append(appendDomid); |
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| 86 | dimYid = StdString("y").append(appendDomid); |
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| 87 | break ; |
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[664] | 88 | case CDomain::type_attr::rectilinear : |
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[449] | 89 | dimXid = StdString("lon").append(appendDomid); |
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| 90 | dimYid = StdString("lat").append(appendDomid); |
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| 91 | break; |
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[488] | 92 | } |
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| 93 | |
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[617] | 94 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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| 95 | |
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[449] | 96 | string lonid,latid,bounds_lonid,bounds_latid ; |
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[611] | 97 | string areaId = "area" + appendDomid; |
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[391] | 98 | /* |
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[300] | 99 | StdString lonid_loc = (server->intraCommSize > 1) |
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[318] | 100 | ? StdString("lon").append(appendDomid).append("_local") |
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[278] | 101 | : lonid; |
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[300] | 102 | StdString latid_loc = (server->intraCommSize > 1) |
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[318] | 103 | ? StdString("lat").append(appendDomid).append("_local") |
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[278] | 104 | : latid; |
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[391] | 105 | */ |
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[219] | 106 | |
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[498] | 107 | try |
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[219] | 108 | { |
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[498] | 109 | switch (SuperClass::type) |
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| 110 | { |
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| 111 | case (MULTI_FILE) : |
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| 112 | { |
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| 113 | // if (domain->isEmpty()) return; |
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[488] | 114 | |
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[498] | 115 | if (server->intraCommSize > 1) |
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| 116 | { |
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| 117 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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| 118 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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| 119 | } |
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[286] | 120 | |
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[498] | 121 | switch (domain->type) |
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| 122 | { |
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| 123 | case CDomain::type_attr::curvilinear : |
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| 124 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 125 | lonid = StdString("nav_lon").append(appendDomid); |
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| 126 | latid = StdString("nav_lat").append(appendDomid); |
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| 127 | break ; |
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[664] | 128 | case CDomain::type_attr::rectilinear : |
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[498] | 129 | lonid = StdString("lon").append(appendDomid); |
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| 130 | latid = StdString("lat").append(appendDomid); |
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| 131 | dim0.push_back(dimYid); |
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| 132 | dim1.push_back(dimXid); |
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| 133 | break; |
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| 134 | } |
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[488] | 135 | |
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[617] | 136 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 137 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 138 | |
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[616] | 139 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
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| 140 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj_srv); |
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[488] | 141 | |
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[617] | 142 | if (domain->hasBounds) |
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| 143 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 144 | |
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[498] | 145 | if (server->intraCommSize > 1) |
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| 146 | { |
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[616] | 147 | this->writeLocalAttributes(domain->zoom_ibegin_srv, |
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| 148 | domain->zoom_ni_srv, |
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| 149 | domain->zoom_jbegin_srv, |
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| 150 | domain->zoom_nj_srv, |
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| 151 | appendDomid); |
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[488] | 152 | |
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[628] | 153 | if (singleDomain) |
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| 154 | this->writeLocalAttributes_IOIPSL(dimXid, dimYid, |
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| 155 | domain->zoom_ibegin_srv, |
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| 156 | domain->zoom_ni_srv, |
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| 157 | domain->zoom_jbegin_srv, |
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| 158 | domain->zoom_nj_srv, |
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| 159 | domain->ni_glo,domain->nj_glo, |
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| 160 | server->intraCommRank,server->intraCommSize); |
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[449] | 161 | } |
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[488] | 162 | |
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[665] | 163 | if (domain->hasLonLat) |
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[498] | 164 | { |
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[665] | 165 | switch (domain->type) |
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| 166 | { |
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| 167 | case CDomain::type_attr::curvilinear : |
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| 168 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 169 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 170 | break ; |
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| 171 | case CDomain::type_attr::rectilinear : |
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| 172 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 173 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 174 | break ; |
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| 175 | } |
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[488] | 176 | |
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[665] | 177 | this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 178 | this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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[219] | 179 | |
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[665] | 180 | if (domain->hasBounds) |
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| 181 | { |
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| 182 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 183 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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[617] | 184 | |
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[665] | 185 | dim0.clear(); |
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| 186 | dim0.push_back(dimYid); |
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| 187 | dim0.push_back(dimXid); |
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| 188 | dim0.push_back(dimVertId); |
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| 189 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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| 190 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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| 191 | } |
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[617] | 192 | } |
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| 193 | |
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[498] | 194 | dim0.clear(); |
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[616] | 195 | dim0.push_back(dimYid); |
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[498] | 196 | dim0.push_back(dimXid); |
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[219] | 197 | |
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| 198 | |
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[498] | 199 | // supress mask if (server->intraCommSize > 1) |
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| 200 | // supress mask { |
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| 201 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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| 202 | // supress mask |
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| 203 | // supress mask this->writeMaskAttributes(maskid, |
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| 204 | // supress mask domain->data_dim.getValue()/*, |
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| 205 | // supress mask domain->data_ni.getValue(), |
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| 206 | // supress mask domain->data_nj.getValue(), |
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| 207 | // supress mask domain->data_ibegin.getValue(), |
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| 208 | // supress mask domain->data_jbegin.getValue()*/); |
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| 209 | // supress mask } |
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[488] | 210 | |
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[498] | 211 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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[219] | 212 | |
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[611] | 213 | if (domain->hasArea) |
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| 214 | { |
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| 215 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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[614] | 216 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 217 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 218 | } |
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| 219 | |
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[498] | 220 | SuperClassWriter::definition_end(); |
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[449] | 221 | |
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[665] | 222 | if (domain->hasLonLat) |
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[498] | 223 | { |
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[665] | 224 | switch (domain->type) |
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| 225 | { |
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| 226 | case CDomain::type_attr::curvilinear : |
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| 227 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
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| 228 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
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| 229 | break; |
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| 230 | case CDomain::type_attr::rectilinear : |
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| 231 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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| 232 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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| 233 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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| 234 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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| 235 | break; |
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| 236 | } |
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[611] | 237 | |
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[665] | 238 | if (domain->hasBounds) |
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| 239 | { |
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| 240 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
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| 241 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
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| 242 | } |
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[617] | 243 | } |
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| 244 | |
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[611] | 245 | if (domain->hasArea) |
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| 246 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0); |
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| 247 | |
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[498] | 248 | SuperClassWriter::definition_start(); |
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[219] | 249 | |
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[498] | 250 | break; |
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| 251 | } |
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| 252 | case (ONE_FILE) : |
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| 253 | { |
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[631] | 254 | SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni); |
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| 255 | SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj); |
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[286] | 256 | |
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[617] | 257 | if (domain->hasBounds) |
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| 258 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 259 | |
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[665] | 260 | if (domain->hasLonLat) |
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[498] | 261 | { |
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[665] | 262 | switch (domain->type) |
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| 263 | { |
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| 264 | case CDomain::type_attr::curvilinear : |
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| 265 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 266 | lonid = StdString("nav_lon").append(appendDomid); |
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| 267 | latid = StdString("nav_lat").append(appendDomid); |
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| 268 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 269 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 270 | break; |
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[449] | 271 | |
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[665] | 272 | case CDomain::type_attr::rectilinear : |
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| 273 | dim0.push_back(dimYid); |
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| 274 | dim1.push_back(dimXid); |
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| 275 | lonid = StdString("lon").append(appendDomid); |
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| 276 | latid = StdString("lat").append(appendDomid); |
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| 277 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 278 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 279 | break; |
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| 280 | } |
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| 281 | |
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| 282 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 283 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 284 | |
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| 285 | this->writeAxisAttributes |
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| 286 | (lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 287 | this->writeAxisAttributes |
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| 288 | (latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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| 289 | |
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| 290 | if (domain->hasBounds) |
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| 291 | { |
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| 292 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 293 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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| 294 | |
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| 295 | dim0.clear(); |
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[498] | 296 | dim0.push_back(dimYid); |
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[665] | 297 | dim0.push_back(dimXid); |
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| 298 | dim0.push_back(dimVertId); |
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| 299 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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| 300 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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| 301 | } |
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[498] | 302 | } |
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[611] | 303 | |
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| 304 | if (domain->hasArea) |
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| 305 | { |
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| 306 | dim0.clear(); |
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| 307 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 308 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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[614] | 309 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 310 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 311 | dim0.clear(); |
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| 312 | } |
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| 313 | |
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| 314 | SuperClassWriter::definition_end(); |
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[286] | 315 | |
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[498] | 316 | switch (domain->type) |
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[384] | 317 | { |
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[498] | 318 | case CDomain::type_attr::curvilinear : |
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[449] | 319 | { |
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[498] | 320 | std::vector<StdSize> start(2) ; |
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| 321 | std::vector<StdSize> count(2) ; |
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| 322 | if (domain->isEmpty()) |
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| 323 | { |
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[611] | 324 | start[0]=0 ; start[1]=0 ; |
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[498] | 325 | count[0]=0 ; count[1]=0 ; |
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| 326 | } |
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| 327 | else |
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| 328 | { |
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[631] | 329 | start[1]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
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| 330 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
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[498] | 331 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
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| 332 | } |
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[488] | 333 | |
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[665] | 334 | if (domain->hasLonLat) |
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| 335 | { |
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| 336 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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| 337 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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| 338 | } |
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[498] | 339 | break; |
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| 340 | } |
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[664] | 341 | case CDomain::type_attr::rectilinear : |
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[449] | 342 | { |
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[665] | 343 | if (domain->hasLonLat) |
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[498] | 344 | { |
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[665] | 345 | std::vector<StdSize> start(1) ; |
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| 346 | std::vector<StdSize> count(1) ; |
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| 347 | if (domain->isEmpty()) |
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| 348 | { |
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| 349 | start[0]=0 ; |
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| 350 | count[0]=0 ; |
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| 351 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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| 352 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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[449] | 353 | |
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[665] | 354 | } |
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| 355 | else |
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| 356 | { |
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| 357 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
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| 358 | count[0]=domain->zoom_nj_srv ; |
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| 359 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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| 360 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
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| 361 | |
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| 362 | start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
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| 363 | count[0]=domain->zoom_ni_srv ; |
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| 364 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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| 365 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
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| 366 | } |
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[498] | 367 | } |
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| 368 | break; |
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[449] | 369 | } |
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[384] | 370 | } |
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[611] | 371 | |
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[617] | 372 | if (domain->hasBounds) |
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| 373 | { |
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| 374 | std::vector<StdSize> start(3); |
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| 375 | std::vector<StdSize> count(3); |
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| 376 | if (domain->isEmpty()) |
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| 377 | { |
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| 378 | start[2] = start[1] = start[0] = 0; |
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| 379 | count[2] = count[1] = count[0] = 0; |
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| 380 | } |
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| 381 | else |
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| 382 | { |
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| 383 | start[2] = 0; |
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[631] | 384 | start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin; |
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| 385 | start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin; |
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[617] | 386 | count[2] = domain->nvertex; |
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| 387 | count[1] = domain->zoom_ni_srv; |
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| 388 | count[0] = domain->zoom_nj_srv; |
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| 389 | } |
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[625] | 390 | |
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[617] | 391 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0, &start, &count); |
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| 392 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0, &start, &count); |
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| 393 | } |
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| 394 | |
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[611] | 395 | if (domain->hasArea) |
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| 396 | { |
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| 397 | std::vector<StdSize> start(2); |
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| 398 | std::vector<StdSize> count(2); |
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| 399 | |
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| 400 | if (domain->isEmpty()) |
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| 401 | { |
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| 402 | start[0] = 0; start[1] = 0; |
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| 403 | count[0] = 0; count[1] = 0; |
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| 404 | } |
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| 405 | else |
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| 406 | { |
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[631] | 407 | start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin; |
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| 408 | start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin; |
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[611] | 409 | count[1] = domain->zoom_ni_srv; |
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| 410 | count[0] = domain->zoom_nj_srv; |
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| 411 | } |
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| 412 | |
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| 413 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count); |
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| 414 | } |
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| 415 | |
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[498] | 416 | SuperClassWriter::definition_start(); |
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| 417 | break; |
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| 418 | } |
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| 419 | default : |
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| 420 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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| 421 | << "[ type = " << SuperClass::type << "]" |
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| 422 | << " not implemented yet !"); |
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| 423 | } |
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[449] | 424 | } |
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[498] | 425 | catch (CNetCdfException& e) |
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| 426 | { |
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| 427 | StdString msg("On writing the domain : "); |
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| 428 | msg.append(domid); msg.append("\n"); |
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| 429 | msg.append("In the context : "); |
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| 430 | msg.append(context->getId()); msg.append("\n"); |
---|
| 431 | msg.append(e.what()); |
---|
| 432 | ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg); |
---|
| 433 | } |
---|
| 434 | |
---|
[449] | 435 | domain->addRelFile(this->filename); |
---|
| 436 | } |
---|
| 437 | |
---|
| 438 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
---|
| 439 | { |
---|
| 440 | CContext* context = CContext::getCurrent() ; |
---|
| 441 | CContextServer* server=context->server ; |
---|
[488] | 442 | |
---|
[449] | 443 | if (domain->IsWritten(this->filename)) return; |
---|
| 444 | domain->checkAttributes(); |
---|
[488] | 445 | |
---|
| 446 | if (domain->isEmpty()) |
---|
[449] | 447 | if (SuperClass::type==MULTI_FILE) return ; |
---|
| 448 | |
---|
| 449 | std::vector<StdString> dim0, dim1; |
---|
[772] | 450 | StdString domid = domain->getDomainOutputName(); |
---|
[705] | 451 | if (isWrittenDomain(domid)) return ; |
---|
[774] | 452 | else setWrittenDomain(domid); |
---|
[705] | 453 | |
---|
[449] | 454 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
| 455 | |
---|
| 456 | |
---|
| 457 | StdString dimXid = StdString("cell").append(appendDomid); |
---|
| 458 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
---|
[488] | 459 | |
---|
[449] | 460 | string lonid,latid,bounds_lonid,bounds_latid ; |
---|
[611] | 461 | string areaId = "area" + appendDomid; |
---|
[449] | 462 | |
---|
[498] | 463 | try |
---|
[449] | 464 | { |
---|
[498] | 465 | switch (SuperClass::type) |
---|
| 466 | { |
---|
| 467 | case (MULTI_FILE) : |
---|
| 468 | { |
---|
| 469 | dim0.push_back(dimXid); |
---|
[657] | 470 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
---|
[488] | 471 | |
---|
[665] | 472 | lonid = StdString("lon").append(appendDomid); |
---|
| 473 | latid = StdString("lat").append(appendDomid); |
---|
[498] | 474 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 475 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
[665] | 476 | if (domain->hasLonLat) |
---|
| 477 | { |
---|
| 478 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
| 479 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
| 480 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 481 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 482 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 483 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 484 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 485 | } |
---|
[488] | 486 | |
---|
[498] | 487 | dim0.clear(); |
---|
| 488 | if (domain->hasBounds) |
---|
| 489 | { |
---|
| 490 | dim0.push_back(dimXid); |
---|
| 491 | dim0.push_back(dimVertId); |
---|
| 492 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
| 493 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
| 494 | } |
---|
| 495 | |
---|
| 496 | dim0.clear(); |
---|
[449] | 497 | dim0.push_back(dimXid); |
---|
[611] | 498 | if (domain->hasArea) |
---|
| 499 | { |
---|
| 500 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
[614] | 501 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 502 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 503 | } |
---|
| 504 | |
---|
[498] | 505 | SuperClassWriter::definition_end(); |
---|
[449] | 506 | |
---|
[665] | 507 | if (domain->hasLonLat) |
---|
[498] | 508 | { |
---|
[665] | 509 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
---|
| 510 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
---|
| 511 | if (domain->hasBounds) |
---|
| 512 | { |
---|
| 513 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
---|
| 514 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
---|
| 515 | } |
---|
[498] | 516 | } |
---|
[611] | 517 | |
---|
| 518 | if (domain->hasArea) |
---|
| 519 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0); |
---|
| 520 | |
---|
[498] | 521 | SuperClassWriter::definition_start(); |
---|
| 522 | break ; |
---|
| 523 | } |
---|
[488] | 524 | |
---|
[498] | 525 | case (ONE_FILE) : |
---|
| 526 | { |
---|
| 527 | lonid = StdString("lon").append(appendDomid); |
---|
| 528 | latid = StdString("lat").append(appendDomid); |
---|
| 529 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 530 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 531 | dim0.push_back(dimXid); |
---|
[705] | 532 | SuperClassWriter::addDimension(dimXid, domain->ni_glo); |
---|
[665] | 533 | if (domain->hasLonLat) |
---|
| 534 | { |
---|
| 535 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
| 536 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
| 537 | |
---|
| 538 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 539 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 540 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 541 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 542 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 543 | } |
---|
[498] | 544 | dim0.clear(); |
---|
[449] | 545 | |
---|
[498] | 546 | if (domain->hasBounds) |
---|
| 547 | { |
---|
| 548 | dim0.push_back(dimXid); |
---|
| 549 | dim0.push_back(dimVertId); |
---|
| 550 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
| 551 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
| 552 | } |
---|
[488] | 553 | |
---|
[611] | 554 | if (domain->hasArea) |
---|
| 555 | { |
---|
| 556 | dim0.clear(); |
---|
| 557 | dim0.push_back(dimXid); |
---|
| 558 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
[614] | 559 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 560 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 561 | } |
---|
| 562 | |
---|
[498] | 563 | SuperClassWriter::definition_end(); |
---|
[488] | 564 | |
---|
[498] | 565 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 566 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
| 567 | if (domain->isEmpty()) |
---|
| 568 | { |
---|
| 569 | start[0]=0 ; |
---|
| 570 | count[0]=0 ; |
---|
| 571 | startBounds[1]=0 ; |
---|
| 572 | countBounds[1]=domain->nvertex ; |
---|
| 573 | startBounds[0]=0 ; |
---|
| 574 | countBounds[0]=0 ; |
---|
| 575 | } |
---|
| 576 | else |
---|
| 577 | { |
---|
[705] | 578 | start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 579 | count[0]=domain->zoom_ni_srv ; |
---|
| 580 | startBounds[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
[498] | 581 | startBounds[1]=0 ; |
---|
[705] | 582 | countBounds[0]=domain->zoom_ni_srv ; |
---|
[498] | 583 | countBounds[1]=domain->nvertex ; |
---|
| 584 | } |
---|
[665] | 585 | |
---|
| 586 | if (domain->hasLonLat) |
---|
[498] | 587 | { |
---|
[665] | 588 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
---|
| 589 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
---|
| 590 | if (domain->hasBounds) |
---|
| 591 | { |
---|
| 592 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
---|
| 593 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
---|
| 594 | } |
---|
[498] | 595 | } |
---|
[488] | 596 | |
---|
[611] | 597 | if (domain->hasArea) |
---|
| 598 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count); |
---|
[488] | 599 | |
---|
[498] | 600 | SuperClassWriter::definition_start(); |
---|
[488] | 601 | |
---|
[498] | 602 | break; |
---|
| 603 | } |
---|
| 604 | default : |
---|
| 605 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 606 | << "[ type = " << SuperClass::type << "]" |
---|
| 607 | << " not implemented yet !"); |
---|
| 608 | } |
---|
[219] | 609 | } |
---|
[498] | 610 | catch (CNetCdfException& e) |
---|
| 611 | { |
---|
| 612 | StdString msg("On writing the domain : "); |
---|
| 613 | msg.append(domid); msg.append("\n"); |
---|
| 614 | msg.append("In the context : "); |
---|
| 615 | msg.append(context->getId()); msg.append("\n"); |
---|
| 616 | msg.append(e.what()); |
---|
| 617 | ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg); |
---|
| 618 | } |
---|
[219] | 619 | domain->addRelFile(this->filename); |
---|
| 620 | } |
---|
| 621 | //-------------------------------------------------------------- |
---|
| 622 | |
---|
[347] | 623 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
---|
[219] | 624 | { |
---|
[609] | 625 | if (axis->IsWritten(this->filename)) return; |
---|
| 626 | axis->checkAttributes(); |
---|
| 627 | int zoom_size_srv = axis->zoom_size_srv; |
---|
| 628 | int zoom_begin_srv = axis->zoom_begin_srv; |
---|
[633] | 629 | int zoom_size = (MULTI_FILE == SuperClass::type) ? zoom_size_srv |
---|
[623] | 630 | : axis->global_zoom_size; |
---|
[633] | 631 | int zoom_begin = (MULTI_FILE == SuperClass::type) ? zoom_begin_srv |
---|
[623] | 632 | : axis->global_zoom_begin; |
---|
[488] | 633 | |
---|
[633] | 634 | if ((0 == zoom_size_srv) && (MULTI_FILE == SuperClass::type)) return; |
---|
[498] | 635 | |
---|
[609] | 636 | std::vector<StdString> dims; |
---|
[772] | 637 | StdString axisid = axis->getAxisOutputName(); |
---|
[705] | 638 | if (isWrittenAxis(axisid)) return ; |
---|
[774] | 639 | else setWrittenAxis(axisid); |
---|
[705] | 640 | |
---|
[609] | 641 | try |
---|
| 642 | { |
---|
| 643 | SuperClassWriter::addDimension(axisid, zoom_size); |
---|
| 644 | dims.push_back(axisid); |
---|
[633] | 645 | SuperClassWriter::addVariable(axisid, NC_FLOAT, dims); |
---|
[219] | 646 | |
---|
[633] | 647 | if (!axis->name.isEmpty()) |
---|
| 648 | SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid); |
---|
[219] | 649 | |
---|
[633] | 650 | if (!axis->standard_name.isEmpty()) |
---|
| 651 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid); |
---|
[540] | 652 | |
---|
[633] | 653 | if (!axis->long_name.isEmpty()) |
---|
| 654 | SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid); |
---|
[219] | 655 | |
---|
[633] | 656 | if (!axis->unit.isEmpty()) |
---|
| 657 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid); |
---|
[219] | 658 | |
---|
[633] | 659 | if (!axis->positive.isEmpty()) |
---|
| 660 | { |
---|
| 661 | SuperClassWriter::addAttribute("axis", string("Z"), &axisid); |
---|
| 662 | SuperClassWriter::addAttribute("positive", |
---|
| 663 | (axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"), |
---|
| 664 | &axisid); |
---|
| 665 | } |
---|
[399] | 666 | |
---|
[633] | 667 | StdString axisBoundsId = axisid + "_bounds"; |
---|
| 668 | if (!axis->bounds.isEmpty()) |
---|
| 669 | { |
---|
| 670 | dims.push_back("axis_nbounds"); |
---|
| 671 | SuperClassWriter::addVariable(axisBoundsId, NC_FLOAT, dims); |
---|
| 672 | SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid); |
---|
| 673 | } |
---|
[488] | 674 | |
---|
[633] | 675 | SuperClassWriter::definition_end(); |
---|
| 676 | switch (SuperClass::type) |
---|
| 677 | { |
---|
| 678 | case MULTI_FILE: |
---|
| 679 | { |
---|
| 680 | CArray<double,1> axis_value(zoom_size_srv); |
---|
| 681 | for (int i = 0; i < zoom_size_srv; i++) axis_value(i) = axis->value_srv(i); |
---|
| 682 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
| 683 | |
---|
[609] | 684 | if (!axis->bounds.isEmpty()) |
---|
[713] | 685 | SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0); |
---|
[488] | 686 | |
---|
[633] | 687 | SuperClassWriter::definition_start(); |
---|
[219] | 688 | |
---|
[633] | 689 | break; |
---|
| 690 | } |
---|
| 691 | case ONE_FILE: |
---|
| 692 | { |
---|
| 693 | CArray<double,1> axis_value(zoom_size_srv); |
---|
| 694 | axis_value = axis->value_srv; |
---|
[498] | 695 | |
---|
[633] | 696 | std::vector<StdSize> start(1) ; |
---|
| 697 | std::vector<StdSize> count(1) ; |
---|
| 698 | start[0] = zoom_begin_srv-axis->global_zoom_begin; |
---|
| 699 | count[0] = zoom_size_srv; |
---|
| 700 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count); |
---|
| 701 | |
---|
[609] | 702 | if (!axis->bounds.isEmpty()) |
---|
[713] | 703 | SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0, &start, &count); |
---|
[609] | 704 | |
---|
| 705 | SuperClassWriter::definition_start(); |
---|
| 706 | |
---|
| 707 | break; |
---|
| 708 | } |
---|
| 709 | default : |
---|
| 710 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 711 | << "[ type = " << SuperClass::type << "]" |
---|
| 712 | << " not implemented yet !"); |
---|
| 713 | } |
---|
| 714 | } |
---|
| 715 | catch (CNetCdfException& e) |
---|
| 716 | { |
---|
| 717 | StdString msg("On writing the axis : "); |
---|
| 718 | msg.append(axisid); msg.append("\n"); |
---|
| 719 | msg.append("In the context : "); |
---|
| 720 | CContext* context = CContext::getCurrent() ; |
---|
| 721 | msg.append(context->getId()); msg.append("\n"); |
---|
| 722 | msg.append(e.what()); |
---|
| 723 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg); |
---|
| 724 | } |
---|
| 725 | axis->addRelFile(this->filename); |
---|
[391] | 726 | } |
---|
[488] | 727 | |
---|
[676] | 728 | //-------------------------------------------------------------- |
---|
| 729 | |
---|
| 730 | void CNc4DataOutput::writeGridCompressed_(CGrid* grid) |
---|
| 731 | { |
---|
| 732 | if (grid->isScalarGrid() || grid->isWrittenCompressed(this->filename)) return; |
---|
| 733 | |
---|
| 734 | try |
---|
| 735 | { |
---|
| 736 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 737 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 738 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 739 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0; |
---|
| 740 | |
---|
| 741 | std::vector<StdString> dims; |
---|
| 742 | |
---|
| 743 | if (grid->isCompressible()) |
---|
| 744 | { |
---|
| 745 | StdString varId = grid->getId() + "_points"; |
---|
| 746 | |
---|
| 747 | int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes(); |
---|
| 748 | SuperClassWriter::addDimension(varId, nbIndexes); |
---|
| 749 | |
---|
| 750 | dims.push_back(varId); |
---|
| 751 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 752 | |
---|
| 753 | StdOStringStream compress; |
---|
| 754 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 755 | { |
---|
| 756 | if (axisDomainOrder(i)) |
---|
| 757 | { |
---|
| 758 | CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]); |
---|
[772] | 759 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 760 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 761 | |
---|
| 762 | switch (domain->type) |
---|
| 763 | { |
---|
| 764 | case CDomain::type_attr::curvilinear: |
---|
| 765 | compress << "y" << appendDomId << " x" << appendDomId; |
---|
| 766 | break; |
---|
| 767 | case CDomain::type_attr::rectilinear: |
---|
| 768 | compress << "lat" << appendDomId << " lon" << appendDomId; |
---|
| 769 | break; |
---|
| 770 | case CDomain::type_attr::unstructured: |
---|
| 771 | compress << "cell" << appendDomId; |
---|
| 772 | break; |
---|
| 773 | } |
---|
| 774 | ++idxDomain; |
---|
| 775 | } |
---|
| 776 | else |
---|
| 777 | { |
---|
| 778 | CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]); |
---|
[772] | 779 | compress << axis->getAxisOutputName(); |
---|
[676] | 780 | ++idxAxis; |
---|
| 781 | } |
---|
| 782 | |
---|
| 783 | if (i != 0) compress << ' '; |
---|
| 784 | } |
---|
| 785 | SuperClassWriter::addAttribute("compress", compress.str(), &varId); |
---|
| 786 | |
---|
| 787 | grid->computeCompressedIndex(); |
---|
| 788 | |
---|
| 789 | CArray<int, 1> indexes(grid->getNumberWrittenIndexes()); |
---|
| 790 | std::map<int, CArray<size_t, 1> >::const_iterator it; |
---|
| 791 | for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it) |
---|
| 792 | { |
---|
| 793 | const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first]; |
---|
| 794 | for (int i = 0; i < it->second.numElements(); i++) |
---|
| 795 | indexes(compressedIndexes(i)) = it->second(i); |
---|
| 796 | } |
---|
| 797 | |
---|
| 798 | switch (SuperClass::type) |
---|
| 799 | { |
---|
| 800 | case (MULTI_FILE): |
---|
| 801 | { |
---|
| 802 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 803 | break; |
---|
| 804 | } |
---|
| 805 | case (ONE_FILE): |
---|
| 806 | { |
---|
| 807 | if (grid->doGridHaveDataDistributed()) |
---|
| 808 | grid->getDistributionServer()->computeGlobalIndex(indexes); |
---|
| 809 | |
---|
| 810 | std::vector<StdSize> start, count; |
---|
| 811 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 812 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 813 | |
---|
| 814 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 815 | break; |
---|
| 816 | } |
---|
| 817 | } |
---|
| 818 | } |
---|
| 819 | else |
---|
| 820 | { |
---|
| 821 | for (int i = 0; i < numElement; ++i) |
---|
| 822 | { |
---|
| 823 | StdString varId, compress; |
---|
| 824 | CArray<int, 1> indexes; |
---|
| 825 | bool isDistributed; |
---|
| 826 | StdSize nbIndexes, totalNbIndexes, offset; |
---|
| 827 | int firstGlobalIndex; |
---|
| 828 | |
---|
| 829 | if (axisDomainOrder(i)) |
---|
| 830 | { |
---|
| 831 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[774] | 832 | StdString domId = domain->getDomainOutputName(); |
---|
| 833 | |
---|
[676] | 834 | if (!domain->isCompressible() |
---|
| 835 | || domain->type == CDomain::type_attr::unstructured |
---|
[774] | 836 | || domain->isWrittenCompressed(this->filename) |
---|
| 837 | || isWrittenCompressedDomain(domId)) |
---|
[676] | 838 | continue; |
---|
| 839 | |
---|
| 840 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 841 | |
---|
| 842 | varId = domId + "_points"; |
---|
| 843 | switch (domain->type) |
---|
| 844 | { |
---|
| 845 | case CDomain::type_attr::curvilinear: |
---|
| 846 | compress = "y" + appendDomId + " x" + appendDomId; |
---|
| 847 | break; |
---|
| 848 | case CDomain::type_attr::rectilinear: |
---|
| 849 | compress = "lat" + appendDomId + " lon" + appendDomId; |
---|
| 850 | break; |
---|
| 851 | } |
---|
| 852 | |
---|
| 853 | const std::vector<int>& indexesToWrite = domain->getIndexesToWrite(); |
---|
| 854 | indexes.resize(indexesToWrite.size()); |
---|
| 855 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 856 | indexes(n) = indexesToWrite[n]; |
---|
| 857 | |
---|
| 858 | isDistributed = domain->isDistributed(); |
---|
| 859 | nbIndexes = domain->getNumberWrittenIndexes(); |
---|
| 860 | totalNbIndexes = domain->getTotalNumberWrittenIndexes(); |
---|
| 861 | offset = domain->getOffsetWrittenIndexes(); |
---|
| 862 | firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo; |
---|
| 863 | |
---|
| 864 | domain->addRelFileCompressed(this->filename); |
---|
[774] | 865 | setWrittenCompressedDomain(domId); |
---|
[676] | 866 | ++idxDomain; |
---|
| 867 | } |
---|
| 868 | else |
---|
| 869 | { |
---|
| 870 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[774] | 871 | StdString axisId = axis->getAxisOutputName(); |
---|
| 872 | |
---|
| 873 | if (!axis->isCompressible() |
---|
| 874 | || axis->isWrittenCompressed(this->filename) |
---|
| 875 | || isWrittenCompressedAxis(axisId)) |
---|
[676] | 876 | continue; |
---|
| 877 | |
---|
| 878 | varId = axisId + "_points"; |
---|
| 879 | compress = axisId; |
---|
| 880 | |
---|
| 881 | const std::vector<int>& indexesToWrite = axis->getIndexesToWrite(); |
---|
| 882 | indexes.resize(indexesToWrite.size()); |
---|
| 883 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 884 | indexes(n) = indexesToWrite[n]; |
---|
| 885 | |
---|
| 886 | isDistributed = axis->isDistributed(); |
---|
| 887 | nbIndexes = axis->getNumberWrittenIndexes(); |
---|
| 888 | totalNbIndexes = axis->getTotalNumberWrittenIndexes(); |
---|
| 889 | offset = axis->getOffsetWrittenIndexes(); |
---|
| 890 | firstGlobalIndex = axis->begin; |
---|
| 891 | |
---|
| 892 | axis->addRelFileCompressed(this->filename); |
---|
[774] | 893 | setWrittenCompressedAxis(axisId); |
---|
[676] | 894 | ++idxAxis; |
---|
| 895 | } |
---|
| 896 | |
---|
| 897 | if (!varId.empty()) |
---|
| 898 | { |
---|
| 899 | SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes); |
---|
| 900 | |
---|
| 901 | dims.clear(); |
---|
| 902 | dims.push_back(varId); |
---|
| 903 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 904 | |
---|
| 905 | SuperClassWriter::addAttribute("compress", compress, &varId); |
---|
| 906 | |
---|
| 907 | switch (SuperClass::type) |
---|
| 908 | { |
---|
| 909 | case (MULTI_FILE): |
---|
| 910 | { |
---|
| 911 | indexes -= firstGlobalIndex; |
---|
| 912 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 913 | break; |
---|
| 914 | } |
---|
| 915 | case (ONE_FILE): |
---|
| 916 | { |
---|
| 917 | std::vector<StdSize> start, count; |
---|
| 918 | start.push_back(offset); |
---|
| 919 | count.push_back(nbIndexes); |
---|
| 920 | |
---|
| 921 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 922 | break; |
---|
| 923 | } |
---|
| 924 | } |
---|
| 925 | } |
---|
| 926 | } |
---|
| 927 | |
---|
| 928 | if (!dims.empty()) |
---|
| 929 | grid->computeCompressedIndex(); |
---|
| 930 | } |
---|
| 931 | |
---|
| 932 | grid->addRelFileCompressed(this->filename); |
---|
| 933 | } |
---|
| 934 | catch (CNetCdfException& e) |
---|
| 935 | { |
---|
| 936 | StdString msg("On writing compressed grid : "); |
---|
| 937 | msg.append(grid->getId()); msg.append("\n"); |
---|
| 938 | msg.append("In the context : "); |
---|
| 939 | CContext* context = CContext::getCurrent(); |
---|
| 940 | msg.append(context->getId()); msg.append("\n"); |
---|
| 941 | msg.append(e.what()); |
---|
| 942 | ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg); |
---|
| 943 | } |
---|
| 944 | } |
---|
| 945 | |
---|
| 946 | //-------------------------------------------------------------- |
---|
| 947 | |
---|
[391] | 948 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
| 949 | { |
---|
[498] | 950 | try |
---|
| 951 | { |
---|
| 952 | SuperClassWriter::addDimension("time_counter"); |
---|
| 953 | } |
---|
| 954 | catch (CNetCdfException& e) |
---|
| 955 | { |
---|
[614] | 956 | StdString msg("On writing time dimension : time_couter\n"); |
---|
[498] | 957 | msg.append("In the context : "); |
---|
| 958 | CContext* context = CContext::getCurrent() ; |
---|
| 959 | msg.append(context->getId()); msg.append("\n"); |
---|
| 960 | msg.append(e.what()); |
---|
| 961 | ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg); |
---|
| 962 | } |
---|
[391] | 963 | } |
---|
[676] | 964 | |
---|
[219] | 965 | //-------------------------------------------------------------- |
---|
| 966 | |
---|
[347] | 967 | void CNc4DataOutput::writeField_(CField* field) |
---|
[219] | 968 | { |
---|
[347] | 969 | CContext* context = CContext::getCurrent() ; |
---|
[300] | 970 | CContextServer* server=context->server ; |
---|
| 971 | |
---|
[219] | 972 | std::vector<StdString> dims, coodinates; |
---|
[347] | 973 | CGrid* grid = field->grid; |
---|
[567] | 974 | if (!grid->doGridHaveDataToWrite()) |
---|
| 975 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[488] | 976 | |
---|
[575] | 977 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
[567] | 978 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0; |
---|
| 979 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 980 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[219] | 981 | |
---|
[567] | 982 | StdString timeid = StdString("time_counter"); |
---|
| 983 | StdString dimXid,dimYid; |
---|
| 984 | std::deque<StdString> dimIdList, dimCoordList; |
---|
[611] | 985 | bool hasArea = false; |
---|
| 986 | StdString cellMeasures = "area:"; |
---|
[676] | 987 | bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output; |
---|
[488] | 988 | |
---|
[567] | 989 | for (int i = 0; i < numElement; ++i) |
---|
[434] | 990 | { |
---|
[567] | 991 | if (axisDomainOrder(i)) |
---|
| 992 | { |
---|
| 993 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[772] | 994 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 995 | StdString appendDomId = singleDomain ? "" : "_" + domId ; |
---|
| 996 | |
---|
| 997 | if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured) |
---|
| 998 | { |
---|
| 999 | dimIdList.push_back(domId + "_points"); |
---|
| 1000 | field->setUseCompressedOutput(); |
---|
| 1001 | } |
---|
| 1002 | |
---|
[567] | 1003 | switch (domain->type) |
---|
| 1004 | { |
---|
[676] | 1005 | case CDomain::type_attr::curvilinear: |
---|
| 1006 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1007 | { |
---|
| 1008 | dimXid = StdString("x").append(appendDomId); |
---|
| 1009 | dimIdList.push_back(dimXid); |
---|
| 1010 | dimYid = StdString("y").append(appendDomId); |
---|
| 1011 | dimIdList.push_back(dimYid); |
---|
| 1012 | } |
---|
| 1013 | dimCoordList.push_back(StdString("nav_lon").append(appendDomId)); |
---|
| 1014 | dimCoordList.push_back(StdString("nav_lat").append(appendDomId)); |
---|
[567] | 1015 | break ; |
---|
[676] | 1016 | case CDomain::type_attr::rectilinear: |
---|
| 1017 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1018 | { |
---|
| 1019 | dimXid = StdString("lon").append(appendDomId); |
---|
| 1020 | dimIdList.push_back(dimXid); |
---|
| 1021 | dimYid = StdString("lat").append(appendDomId); |
---|
| 1022 | dimIdList.push_back(dimYid); |
---|
| 1023 | } |
---|
[567] | 1024 | break ; |
---|
[676] | 1025 | case CDomain::type_attr::unstructured: |
---|
| 1026 | dimXid = StdString("cell").append(appendDomId); |
---|
[567] | 1027 | dimIdList.push_back(dimXid); |
---|
[676] | 1028 | dimCoordList.push_back(StdString("lon").append(appendDomId)); |
---|
| 1029 | dimCoordList.push_back(StdString("lat").append(appendDomId)); |
---|
[567] | 1030 | break ; |
---|
[676] | 1031 | } |
---|
| 1032 | if (domain->hasArea) |
---|
| 1033 | { |
---|
| 1034 | hasArea = true; |
---|
| 1035 | cellMeasures += " area" + appendDomId; |
---|
| 1036 | } |
---|
| 1037 | ++idxDomain; |
---|
[567] | 1038 | } |
---|
| 1039 | else |
---|
| 1040 | { |
---|
| 1041 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[772] | 1042 | StdString axisId = axis->getAxisOutputName(); |
---|
[676] | 1043 | |
---|
| 1044 | if (compressedOutput && axis->isCompressible()) |
---|
| 1045 | { |
---|
| 1046 | dimIdList.push_back(axisId + "_points"); |
---|
| 1047 | field->setUseCompressedOutput(); |
---|
| 1048 | } |
---|
| 1049 | else |
---|
| 1050 | dimIdList.push_back(axisId); |
---|
| 1051 | |
---|
| 1052 | dimCoordList.push_back(axisId); |
---|
| 1053 | ++idxAxis; |
---|
[567] | 1054 | } |
---|
| 1055 | } |
---|
[488] | 1056 | |
---|
| 1057 | /* |
---|
[300] | 1058 | StdString lonid_loc = (server->intraCommSize > 1) |
---|
[318] | 1059 | ? StdString("lon").append(appendDomid).append("_local") |
---|
[278] | 1060 | : lonid; |
---|
[300] | 1061 | StdString latid_loc = (server->intraCommSize > 1) |
---|
[318] | 1062 | ? StdString("lat").append(appendDomid).append("_local") |
---|
[278] | 1063 | : latid; |
---|
[391] | 1064 | */ |
---|
[770] | 1065 | StdString fieldid = field->getFieldOutputName(); |
---|
[219] | 1066 | |
---|
[300] | 1067 | // unsigned int ssize = domain->zoom_ni_loc.getValue() * domain->zoom_nj_loc.getValue(); |
---|
| 1068 | // bool isCurvilinear = (domain->lonvalue.getValue()->size() == ssize); |
---|
[488] | 1069 | // bool isCurvilinear = domain->isCurvilinear ; |
---|
| 1070 | |
---|
[464] | 1071 | nc_type type ; |
---|
| 1072 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
| 1073 | else |
---|
| 1074 | { |
---|
| 1075 | if (field->prec==2) type = NC_SHORT ; |
---|
| 1076 | else if (field->prec==4) type = NC_FLOAT ; |
---|
[488] | 1077 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
[464] | 1078 | } |
---|
[488] | 1079 | |
---|
[645] | 1080 | bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once); |
---|
[488] | 1081 | |
---|
[219] | 1082 | if (wtime) |
---|
| 1083 | { |
---|
[488] | 1084 | |
---|
[449] | 1085 | //StdOStringStream oss; |
---|
| 1086 | // oss << "time_" << field->operation.getValue() |
---|
| 1087 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 1088 | //oss |
---|
[645] | 1089 | if (field->getOperationTimeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant")); |
---|
| 1090 | else if (field->getOperationTimeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered")); |
---|
[219] | 1091 | dims.push_back(timeid); |
---|
| 1092 | } |
---|
| 1093 | |
---|
[676] | 1094 | if (compressedOutput && grid->isCompressible()) |
---|
[219] | 1095 | { |
---|
[676] | 1096 | dims.push_back(grid->getId() + "_points"); |
---|
| 1097 | field->setUseCompressedOutput(); |
---|
[219] | 1098 | } |
---|
[676] | 1099 | else |
---|
| 1100 | { |
---|
| 1101 | while (!dimIdList.empty()) |
---|
| 1102 | { |
---|
| 1103 | dims.push_back(dimIdList.back()); |
---|
| 1104 | dimIdList.pop_back(); |
---|
| 1105 | } |
---|
| 1106 | } |
---|
[219] | 1107 | |
---|
[567] | 1108 | while (!dimCoordList.empty()) |
---|
[219] | 1109 | { |
---|
[567] | 1110 | coodinates.push_back(dimCoordList.back()); |
---|
| 1111 | dimCoordList.pop_back(); |
---|
[219] | 1112 | } |
---|
| 1113 | |
---|
[498] | 1114 | try |
---|
| 1115 | { |
---|
| 1116 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
[488] | 1117 | |
---|
[498] | 1118 | if (!field->standard_name.isEmpty()) |
---|
| 1119 | SuperClassWriter::addAttribute |
---|
| 1120 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
[219] | 1121 | |
---|
[498] | 1122 | if (!field->long_name.isEmpty()) |
---|
| 1123 | SuperClassWriter::addAttribute |
---|
| 1124 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
[219] | 1125 | |
---|
[498] | 1126 | if (!field->unit.isEmpty()) |
---|
| 1127 | SuperClassWriter::addAttribute |
---|
| 1128 | ("units", field->unit.getValue(), &fieldid); |
---|
[463] | 1129 | |
---|
[498] | 1130 | if (!field->valid_min.isEmpty()) |
---|
| 1131 | SuperClassWriter::addAttribute |
---|
| 1132 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
[463] | 1133 | |
---|
[498] | 1134 | if (!field->valid_max.isEmpty()) |
---|
| 1135 | SuperClassWriter::addAttribute |
---|
| 1136 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
[464] | 1137 | |
---|
[498] | 1138 | if (!field->scale_factor.isEmpty()) |
---|
| 1139 | SuperClassWriter::addAttribute |
---|
| 1140 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
[464] | 1141 | |
---|
[498] | 1142 | if (!field->add_offset.isEmpty()) |
---|
| 1143 | SuperClassWriter::addAttribute |
---|
| 1144 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
[488] | 1145 | |
---|
[498] | 1146 | SuperClassWriter::addAttribute |
---|
| 1147 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
[472] | 1148 | |
---|
[498] | 1149 | // write child variables as attributes |
---|
[488] | 1150 | |
---|
| 1151 | |
---|
[498] | 1152 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
| 1153 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
[472] | 1154 | |
---|
[488] | 1155 | |
---|
[498] | 1156 | if (wtime) |
---|
| 1157 | { |
---|
[614] | 1158 | CDuration freqOp = field->freq_op.getValue(); |
---|
| 1159 | freqOp.solveTimeStep(*context->calendar); |
---|
| 1160 | StdString freqOpStr = freqOp.toStringUDUnits(); |
---|
[612] | 1161 | SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid); |
---|
[437] | 1162 | |
---|
[614] | 1163 | CDuration freqOut = field->getRelFile()->output_freq.getValue(); |
---|
| 1164 | freqOut.solveTimeStep(*context->calendar); |
---|
| 1165 | SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid); |
---|
[612] | 1166 | |
---|
[618] | 1167 | StdString cellMethods = "time: "; |
---|
[612] | 1168 | if (field->operation.getValue() == "instant") cellMethods += "point"; |
---|
| 1169 | else if (field->operation.getValue() == "average") cellMethods += "mean"; |
---|
| 1170 | else if (field->operation.getValue() == "accumulate") cellMethods += "sum"; |
---|
| 1171 | else cellMethods += field->operation; |
---|
[614] | 1172 | if (freqOp.resolve(*context->calendar) != freqOut.resolve(*context->calendar)) |
---|
| 1173 | cellMethods += " (interval: " + freqOpStr + ")"; |
---|
[612] | 1174 | SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid); |
---|
[498] | 1175 | } |
---|
[488] | 1176 | |
---|
[611] | 1177 | if (hasArea) |
---|
| 1178 | SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid); |
---|
| 1179 | |
---|
[498] | 1180 | if (!field->default_value.isEmpty()) |
---|
| 1181 | { |
---|
| 1182 | double default_value = field->default_value.getValue(); |
---|
| 1183 | float fdefault_value = (float)default_value; |
---|
| 1184 | if (type == NC_DOUBLE) |
---|
| 1185 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
| 1186 | else |
---|
| 1187 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
| 1188 | } |
---|
| 1189 | else |
---|
[517] | 1190 | SuperClassWriter::setDefaultValue(fieldid, (double*)NULL); |
---|
[219] | 1191 | |
---|
[606] | 1192 | if (field->compression_level.isEmpty()) |
---|
| 1193 | field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level; |
---|
| 1194 | SuperClassWriter::setCompressionLevel(fieldid, field->compression_level); |
---|
| 1195 | |
---|
[498] | 1196 | { // Ecriture des coordonnées |
---|
[488] | 1197 | |
---|
[498] | 1198 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
| 1199 | std::vector<StdString>::iterator |
---|
| 1200 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
[488] | 1201 | |
---|
[498] | 1202 | for (; itc!= endc; itc++) |
---|
| 1203 | { |
---|
| 1204 | StdString & coord = *itc; |
---|
| 1205 | if (itc+1 != endc) |
---|
| 1206 | coordstr.append(coord).append(" "); |
---|
| 1207 | else coordstr.append(coord); |
---|
| 1208 | } |
---|
[219] | 1209 | |
---|
[498] | 1210 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
[219] | 1211 | |
---|
[498] | 1212 | } |
---|
[219] | 1213 | } |
---|
[498] | 1214 | catch (CNetCdfException& e) |
---|
| 1215 | { |
---|
| 1216 | StdString msg("On writing field : "); |
---|
| 1217 | msg.append(fieldid); msg.append("\n"); |
---|
| 1218 | msg.append("In the context : "); |
---|
| 1219 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1220 | msg.append(e.what()); |
---|
| 1221 | ERROR("CNc4DataOutput::writeField_(CField* field)", << msg); |
---|
| 1222 | } |
---|
[219] | 1223 | } |
---|
| 1224 | |
---|
| 1225 | //-------------------------------------------------------------- |
---|
| 1226 | |
---|
[347] | 1227 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
[219] | 1228 | { |
---|
[773] | 1229 | StdString filename = file->getFileOutputName(); |
---|
[219] | 1230 | StdString description = (!file->description.isEmpty()) |
---|
| 1231 | ? file->description.getValue() |
---|
[335] | 1232 | : StdString("Created by xios"); |
---|
[609] | 1233 | |
---|
| 1234 | singleDomain = (file->nbDomains == 1); |
---|
| 1235 | |
---|
[498] | 1236 | try |
---|
| 1237 | { |
---|
| 1238 | this->writeFileAttributes(filename, description, |
---|
[614] | 1239 | StdString("CF-1.5"), |
---|
[498] | 1240 | StdString("An IPSL model"), |
---|
| 1241 | this->getTimeStamp()); |
---|
[609] | 1242 | |
---|
[701] | 1243 | if (!appendMode) |
---|
| 1244 | SuperClassWriter::addDimension("axis_nbounds", 2); |
---|
[498] | 1245 | } |
---|
| 1246 | catch (CNetCdfException& e) |
---|
| 1247 | { |
---|
| 1248 | StdString msg("On writing file : "); |
---|
| 1249 | msg.append(filename); msg.append("\n"); |
---|
| 1250 | msg.append("In the context : "); |
---|
| 1251 | CContext* context = CContext::getCurrent() ; |
---|
| 1252 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1253 | msg.append(e.what()); |
---|
| 1254 | ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg); |
---|
| 1255 | } |
---|
[219] | 1256 | } |
---|
[488] | 1257 | |
---|
[472] | 1258 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
| 1259 | { |
---|
[773] | 1260 | StdString name = var->getVariableOutputName(); |
---|
[488] | 1261 | |
---|
[498] | 1262 | try |
---|
| 1263 | { |
---|
[527] | 1264 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1265 | addAttribute(name, var->getData<int>(), &fieldId); |
---|
| 1266 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1267 | addAttribute(name, var->getData<short int>(), &fieldId); |
---|
| 1268 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1269 | addAttribute(name, var->getData<float>(), &fieldId); |
---|
| 1270 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1271 | addAttribute(name, var->getData<double>(), &fieldId); |
---|
| 1272 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1273 | addAttribute(name, var->getData<string>(), &fieldId); |
---|
| 1274 | else |
---|
| 1275 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", |
---|
| 1276 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1277 | } |
---|
| 1278 | catch (CNetCdfException& e) |
---|
| 1279 | { |
---|
| 1280 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1281 | msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n"); |
---|
| 1282 | msg.append("In the context : "); |
---|
| 1283 | CContext* context = CContext::getCurrent() ; |
---|
| 1284 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1285 | msg.append(e.what()); |
---|
| 1286 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg); |
---|
| 1287 | } |
---|
[472] | 1288 | } |
---|
[488] | 1289 | |
---|
[472] | 1290 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
| 1291 | { |
---|
[773] | 1292 | StdString name = var->getVariableOutputName(); |
---|
| 1293 | |
---|
[498] | 1294 | try |
---|
| 1295 | { |
---|
[527] | 1296 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1297 | addAttribute(name, var->getData<int>()); |
---|
| 1298 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1299 | addAttribute(name, var->getData<short int>()); |
---|
| 1300 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1301 | addAttribute(name, var->getData<float>()); |
---|
| 1302 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1303 | addAttribute(name, var->getData<double>()); |
---|
| 1304 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1305 | addAttribute(name, var->getData<string>()); |
---|
| 1306 | else |
---|
| 1307 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", |
---|
| 1308 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1309 | } |
---|
| 1310 | catch (CNetCdfException& e) |
---|
| 1311 | { |
---|
| 1312 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1313 | msg.append(name); msg.append("\n"); |
---|
| 1314 | msg.append("In the context : "); |
---|
| 1315 | CContext* context = CContext::getCurrent() ; |
---|
| 1316 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1317 | msg.append(e.what()); |
---|
| 1318 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg); |
---|
| 1319 | } |
---|
[488] | 1320 | } |
---|
| 1321 | |
---|
[321] | 1322 | void CNc4DataOutput::syncFile_ (void) |
---|
| 1323 | { |
---|
[498] | 1324 | try |
---|
| 1325 | { |
---|
| 1326 | SuperClassWriter::sync() ; |
---|
| 1327 | } |
---|
| 1328 | catch (CNetCdfException& e) |
---|
| 1329 | { |
---|
| 1330 | StdString msg("On synchronizing the write among processes"); |
---|
| 1331 | msg.append("In the context : "); |
---|
| 1332 | CContext* context = CContext::getCurrent() ; |
---|
| 1333 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1334 | msg.append(e.what()); |
---|
| 1335 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 1336 | } |
---|
[321] | 1337 | } |
---|
[219] | 1338 | |
---|
[286] | 1339 | void CNc4DataOutput::closeFile_ (void) |
---|
| 1340 | { |
---|
[498] | 1341 | try |
---|
| 1342 | { |
---|
| 1343 | SuperClassWriter::close() ; |
---|
| 1344 | } |
---|
| 1345 | catch (CNetCdfException& e) |
---|
| 1346 | { |
---|
| 1347 | StdString msg("On closing file"); |
---|
| 1348 | msg.append("In the context : "); |
---|
| 1349 | CContext* context = CContext::getCurrent() ; |
---|
| 1350 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1351 | msg.append(e.what()); |
---|
| 1352 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 1353 | } |
---|
| 1354 | |
---|
[286] | 1355 | } |
---|
| 1356 | |
---|
[219] | 1357 | //--------------------------------------------------------------- |
---|
| 1358 | |
---|
| 1359 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
| 1360 | { |
---|
| 1361 | const int buffer_size = 100; |
---|
| 1362 | time_t rawtime; |
---|
| 1363 | struct tm * timeinfo = NULL; |
---|
| 1364 | char buffer [buffer_size]; |
---|
| 1365 | |
---|
| 1366 | time ( &rawtime ); |
---|
| 1367 | timeinfo = localtime ( &rawtime ); |
---|
| 1368 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
---|
| 1369 | |
---|
| 1370 | return (StdString(buffer)); |
---|
| 1371 | } |
---|
[488] | 1372 | |
---|
[219] | 1373 | //--------------------------------------------------------------- |
---|
[488] | 1374 | |
---|
[347] | 1375 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
[219] | 1376 | { |
---|
[707] | 1377 | CContext* context = CContext::getCurrent(); |
---|
| 1378 | CContextServer* server = context->server; |
---|
| 1379 | CGrid* grid = field->grid; |
---|
[300] | 1380 | |
---|
[707] | 1381 | if (!grid->doGridHaveDataToWrite()) |
---|
| 1382 | if (SuperClass::type == MULTI_FILE || !isCollective) return; |
---|
[488] | 1383 | |
---|
[770] | 1384 | StdString fieldid = field->getFieldOutputName(); |
---|
[286] | 1385 | |
---|
[707] | 1386 | StdOStringStream oss; |
---|
| 1387 | string timeAxisId; |
---|
| 1388 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisId = "time_instant"; |
---|
| 1389 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisId = "time_centered"; |
---|
[488] | 1390 | |
---|
[707] | 1391 | StdString timeBoundId("time_counter_bounds"); |
---|
[449] | 1392 | |
---|
[707] | 1393 | StdString timeAxisBoundId; |
---|
| 1394 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisBoundId = "time_instant_bounds"; |
---|
| 1395 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisBoundId = "time_centered_bounds"; |
---|
[488] | 1396 | |
---|
[707] | 1397 | if (!field->wasWritten()) |
---|
| 1398 | { |
---|
[757] | 1399 | if (appendMode && field->file->record_offset.isEmpty()) |
---|
[707] | 1400 | { |
---|
| 1401 | field->resetNStep(getRecordFromTime(field->last_Write_srv) + 1); |
---|
| 1402 | } |
---|
[488] | 1403 | |
---|
[707] | 1404 | field->setWritten(); |
---|
| 1405 | } |
---|
[488] | 1406 | |
---|
| 1407 | |
---|
[707] | 1408 | CArray<double,1> time_data(1); |
---|
| 1409 | CArray<double,1> time_data_bound(2); |
---|
| 1410 | CArray<double,1> time_counter(1); |
---|
| 1411 | CArray<double,1> time_counter_bound(2); |
---|
| 1412 | |
---|
| 1413 | bool wtime = (field->getOperationTimeType() != func::CFunctor::once); |
---|
| 1414 | |
---|
[444] | 1415 | if (wtime) |
---|
| 1416 | { |
---|
[692] | 1417 | Time lastWrite = field->last_Write_srv; |
---|
| 1418 | Time lastLastWrite = field->lastlast_Write_srv; |
---|
| 1419 | |
---|
[645] | 1420 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[692] | 1421 | time_data(0) = lastWrite; |
---|
| 1422 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
| 1423 | time_data(0) = (lastWrite + lastLastWrite) / 2; |
---|
[488] | 1424 | |
---|
[645] | 1425 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[692] | 1426 | time_data_bound(0) = time_data_bound(1) = lastWrite; |
---|
[645] | 1427 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
[488] | 1428 | { |
---|
[692] | 1429 | time_data_bound(0) = lastLastWrite; |
---|
| 1430 | time_data_bound(1) = lastWrite; |
---|
[488] | 1431 | } |
---|
| 1432 | |
---|
[692] | 1433 | if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
| 1434 | time_counter(0) = lastWrite; |
---|
| 1435 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
| 1436 | time_counter(0) = (lastWrite + lastLastWrite) / 2; |
---|
| 1437 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
| 1438 | time_counter(0) = field->getNStep() - 1; |
---|
| 1439 | |
---|
| 1440 | |
---|
| 1441 | if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
| 1442 | time_counter_bound(0) = time_counter_bound(1) = lastWrite; |
---|
| 1443 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
| 1444 | { |
---|
| 1445 | time_counter_bound(0) = lastLastWrite; |
---|
| 1446 | time_counter_bound(1) = lastWrite; |
---|
| 1447 | } |
---|
| 1448 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
| 1449 | time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1; |
---|
| 1450 | } |
---|
| 1451 | |
---|
[707] | 1452 | bool isRoot = (server->intraCommRank == 0); |
---|
[488] | 1453 | |
---|
[464] | 1454 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
| 1455 | { |
---|
[707] | 1456 | double scaleFactor = 1.0; |
---|
| 1457 | double addOffset = 0.0; |
---|
| 1458 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
---|
| 1459 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
---|
| 1460 | field->scaleFactorAddOffset(scaleFactor, addOffset); |
---|
[464] | 1461 | } |
---|
[488] | 1462 | |
---|
[498] | 1463 | try |
---|
[219] | 1464 | { |
---|
[676] | 1465 | size_t writtenSize; |
---|
| 1466 | if (field->getUseCompressedOutput()) |
---|
| 1467 | writtenSize = grid->getNumberWrittenIndexes(); |
---|
| 1468 | else |
---|
| 1469 | writtenSize = grid->getWrittenDataSize(); |
---|
| 1470 | |
---|
| 1471 | CArray<double,1> fieldData(writtenSize); |
---|
[567] | 1472 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
---|
[676] | 1473 | |
---|
| 1474 | if (field->getUseCompressedOutput()) |
---|
| 1475 | field->outputCompressedField(fieldData); |
---|
| 1476 | else |
---|
| 1477 | field->outputField(fieldData); |
---|
| 1478 | |
---|
[707] | 1479 | if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData); |
---|
[567] | 1480 | |
---|
| 1481 | switch (SuperClass::type) |
---|
[498] | 1482 | { |
---|
[567] | 1483 | case (MULTI_FILE) : |
---|
| 1484 | { |
---|
[692] | 1485 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1); |
---|
[567] | 1486 | if (wtime) |
---|
| 1487 | { |
---|
[692] | 1488 | SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
| 1489 | SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
| 1490 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
| 1491 | { |
---|
| 1492 | SuperClassWriter::writeData(time_counter, string("time_counter"), isCollective, field->getNStep() - 1); |
---|
| 1493 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 1494 | SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
| 1495 | } |
---|
[567] | 1496 | } |
---|
[707] | 1497 | break; |
---|
[567] | 1498 | } |
---|
| 1499 | case (ONE_FILE) : |
---|
| 1500 | { |
---|
[676] | 1501 | const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 1502 | const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 1503 | const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
[464] | 1504 | |
---|
[676] | 1505 | std::vector<StdSize> start, count; |
---|
[464] | 1506 | |
---|
[676] | 1507 | if (field->getUseCompressedOutput()) |
---|
| 1508 | { |
---|
| 1509 | if (grid->isCompressible()) |
---|
| 1510 | { |
---|
| 1511 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 1512 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 1513 | } |
---|
| 1514 | else |
---|
| 1515 | { |
---|
| 1516 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 1517 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1518 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 1519 | int numElement = axisDomainOrder.numElements(); |
---|
| 1520 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 1521 | int idx = nZoomBeginGlobal.size() - 1; |
---|
[464] | 1522 | |
---|
[676] | 1523 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 1524 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 1525 | |
---|
| 1526 | |
---|
| 1527 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 1528 | { |
---|
| 1529 | if (axisDomainOrder(i)) |
---|
| 1530 | { |
---|
| 1531 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 1532 | |
---|
| 1533 | if (domain->isCompressible()) |
---|
| 1534 | { |
---|
| 1535 | start.push_back(domain->getOffsetWrittenIndexes()); |
---|
| 1536 | count.push_back(domain->getNumberWrittenIndexes()); |
---|
[710] | 1537 | idx -= 2; |
---|
[676] | 1538 | } |
---|
| 1539 | else |
---|
| 1540 | { |
---|
[710] | 1541 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 1542 | { |
---|
| 1543 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 1544 | count.push_back(nZoomSizeServer[idx]); |
---|
| 1545 | } |
---|
| 1546 | --idx; |
---|
[676] | 1547 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 1548 | count.push_back(nZoomSizeServer[idx]); |
---|
[710] | 1549 | --idx; |
---|
[676] | 1550 | } |
---|
| 1551 | --idxDomain; |
---|
| 1552 | } |
---|
| 1553 | else |
---|
| 1554 | { |
---|
| 1555 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 1556 | |
---|
| 1557 | if (axis->isCompressible()) |
---|
| 1558 | { |
---|
| 1559 | start.push_back(axis->getOffsetWrittenIndexes()); |
---|
| 1560 | count.push_back(axis->getNumberWrittenIndexes()); |
---|
| 1561 | } |
---|
| 1562 | else |
---|
| 1563 | { |
---|
| 1564 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 1565 | count.push_back(nZoomSizeServer[idx]); |
---|
| 1566 | } |
---|
| 1567 | |
---|
| 1568 | --idxAxis; |
---|
| 1569 | --idx; |
---|
| 1570 | } |
---|
| 1571 | } |
---|
| 1572 | } |
---|
| 1573 | } |
---|
| 1574 | else |
---|
[498] | 1575 | { |
---|
[705] | 1576 | |
---|
| 1577 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 1578 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1579 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 1580 | int numElement = axisDomainOrder.numElements(); |
---|
| 1581 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 1582 | int idx = nZoomBeginGlobal.size() - 1; |
---|
| 1583 | |
---|
| 1584 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 1585 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 1586 | |
---|
| 1587 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 1588 | { |
---|
| 1589 | if (axisDomainOrder(i)) |
---|
| 1590 | { |
---|
| 1591 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[710] | 1592 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
[705] | 1593 | { |
---|
| 1594 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 1595 | count.push_back(nZoomSizeServer[idx]); |
---|
| 1596 | } |
---|
| 1597 | --idx ; |
---|
| 1598 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 1599 | count.push_back(nZoomSizeServer[idx]); |
---|
| 1600 | --idx ; |
---|
| 1601 | --idxDomain; |
---|
| 1602 | } |
---|
| 1603 | else |
---|
| 1604 | { |
---|
| 1605 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 1606 | count.push_back(nZoomSizeServer[idx]); |
---|
| 1607 | --idx; |
---|
| 1608 | } |
---|
| 1609 | } |
---|
[498] | 1610 | } |
---|
[488] | 1611 | |
---|
[676] | 1612 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count); |
---|
[586] | 1613 | if (wtime) |
---|
| 1614 | { |
---|
[692] | 1615 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 1616 | SuperClassWriter::writeTimeAxisData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 1617 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
| 1618 | { |
---|
| 1619 | SuperClassWriter::writeTimeAxisData(time_counter, string("time_counter"), isCollective, field->getNStep() - 1, isRoot); |
---|
| 1620 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 1621 | SuperClassWriter::writeTimeAxisData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 1622 | } |
---|
[586] | 1623 | } |
---|
| 1624 | |
---|
| 1625 | break; |
---|
[286] | 1626 | } |
---|
[567] | 1627 | } |
---|
[219] | 1628 | } |
---|
[498] | 1629 | catch (CNetCdfException& e) |
---|
| 1630 | { |
---|
| 1631 | StdString msg("On writing field data: "); |
---|
| 1632 | msg.append(fieldid); msg.append("\n"); |
---|
| 1633 | msg.append("In the context : "); |
---|
| 1634 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1635 | msg.append(e.what()); |
---|
| 1636 | ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg); |
---|
| 1637 | } |
---|
[219] | 1638 | } |
---|
| 1639 | |
---|
| 1640 | //--------------------------------------------------------------- |
---|
| 1641 | |
---|
| 1642 | void CNc4DataOutput::writeTimeAxis_ |
---|
[347] | 1643 | (CField* field, |
---|
[343] | 1644 | const boost::shared_ptr<CCalendar> cal) |
---|
[219] | 1645 | { |
---|
| 1646 | StdOStringStream oss; |
---|
[488] | 1647 | |
---|
[645] | 1648 | if (field->getOperationTimeType() == func::CFunctor::once) return ; |
---|
[488] | 1649 | |
---|
[449] | 1650 | // oss << "time_" << field->operation.getValue() |
---|
| 1651 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 1652 | |
---|
[449] | 1653 | // StdString axisid = oss.str(); |
---|
[645] | 1654 | // if (field->getOperationTimeType() == func::CFunctor::centered) axisid="time_centered" ; |
---|
| 1655 | // else if (field->getOperationTimeType() == func::CFunctor::instant) axisid="time_instant" ; |
---|
[219] | 1656 | |
---|
[488] | 1657 | StdString axisid("time_centered") ; |
---|
| 1658 | StdString axisBoundId("time_centered_bounds"); |
---|
| 1659 | StdString timeid("time_counter"); |
---|
[614] | 1660 | StdString timeBoundId("axis_nbounds"); |
---|
[488] | 1661 | |
---|
[645] | 1662 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[488] | 1663 | { |
---|
| 1664 | axisid = "time_instant"; |
---|
| 1665 | axisBoundId = "time_instant_bounds"; |
---|
| 1666 | } |
---|
| 1667 | |
---|
[498] | 1668 | try |
---|
[219] | 1669 | { |
---|
[498] | 1670 | // Adding time_instant or time_centered |
---|
| 1671 | std::vector<StdString> dims; |
---|
| 1672 | dims.push_back(timeid); |
---|
| 1673 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 1674 | { |
---|
| 1675 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
[488] | 1676 | |
---|
[498] | 1677 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
| 1678 | StdOStringStream oss2; |
---|
| 1679 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
---|
| 1680 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
---|
| 1681 | StdString strInitdate=oss2.str() ; |
---|
| 1682 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
| 1683 | this->writeTimeAxisAttributes |
---|
| 1684 | (axisid, cal->getType(), |
---|
| 1685 | StdString("seconds since ").append(strTimeOrigin), |
---|
| 1686 | strTimeOrigin, axisBoundId); |
---|
| 1687 | } |
---|
[219] | 1688 | |
---|
[498] | 1689 | // Adding time_instant_bounds or time_centered_bounds variables |
---|
| 1690 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 1691 | { |
---|
| 1692 | dims.clear() ; |
---|
| 1693 | dims.push_back(timeid); |
---|
| 1694 | dims.push_back(timeBoundId); |
---|
| 1695 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 1696 | } |
---|
[488] | 1697 | |
---|
[692] | 1698 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
[498] | 1699 | { |
---|
[692] | 1700 | // Adding time_counter |
---|
| 1701 | axisid = "time_counter"; |
---|
| 1702 | axisBoundId = "time_counter_bounds"; |
---|
| 1703 | dims.clear(); |
---|
| 1704 | dims.push_back(timeid); |
---|
| 1705 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 1706 | { |
---|
| 1707 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
| 1708 | SuperClassWriter::addAttribute("axis", string("T"), &axisid); |
---|
[488] | 1709 | |
---|
[692] | 1710 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 1711 | { |
---|
| 1712 | CDate timeOrigin = cal->getTimeOrigin(); |
---|
| 1713 | StdString strTimeOrigin = timeOrigin.toString(); |
---|
[498] | 1714 | |
---|
[692] | 1715 | this->writeTimeAxisAttributes(axisid, cal->getType(), |
---|
| 1716 | StdString("seconds since ").append(strTimeOrigin), |
---|
| 1717 | strTimeOrigin, axisBoundId); |
---|
| 1718 | } |
---|
| 1719 | } |
---|
| 1720 | |
---|
| 1721 | // Adding time_counter_bound dimension |
---|
| 1722 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 1723 | { |
---|
| 1724 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 1725 | { |
---|
| 1726 | dims.clear(); |
---|
| 1727 | dims.push_back(timeid); |
---|
| 1728 | dims.push_back(timeBoundId); |
---|
| 1729 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 1730 | } |
---|
| 1731 | } |
---|
[498] | 1732 | } |
---|
[488] | 1733 | } |
---|
[498] | 1734 | catch (CNetCdfException& e) |
---|
[488] | 1735 | { |
---|
[498] | 1736 | StdString msg("On writing time axis data: "); |
---|
| 1737 | msg.append("In the context : "); |
---|
| 1738 | CContext* context = CContext::getCurrent() ; |
---|
| 1739 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1740 | msg.append(e.what()); |
---|
| 1741 | ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \ |
---|
| 1742 | const boost::shared_ptr<CCalendar> cal)", << msg); |
---|
[488] | 1743 | } |
---|
[219] | 1744 | } |
---|
| 1745 | |
---|
| 1746 | //--------------------------------------------------------------- |
---|
[488] | 1747 | |
---|
[219] | 1748 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
| 1749 | const StdString & calendar, |
---|
| 1750 | const StdString & units, |
---|
| 1751 | const StdString & time_origin, |
---|
[488] | 1752 | const StdString & time_bounds, |
---|
[219] | 1753 | const StdString & standard_name, |
---|
[613] | 1754 | const StdString & long_name) |
---|
[219] | 1755 | { |
---|
[498] | 1756 | try |
---|
| 1757 | { |
---|
| 1758 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 1759 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
| 1760 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
| 1761 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
| 1762 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
| 1763 | SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name); |
---|
| 1764 | } |
---|
| 1765 | catch (CNetCdfException& e) |
---|
| 1766 | { |
---|
| 1767 | StdString msg("On writing time axis Attribute: "); |
---|
| 1768 | msg.append("In the context : "); |
---|
| 1769 | CContext* context = CContext::getCurrent() ; |
---|
| 1770 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1771 | msg.append(e.what()); |
---|
| 1772 | ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 1773 | const StdString & calendar,\ |
---|
| 1774 | const StdString & units, \ |
---|
| 1775 | const StdString & time_origin, \ |
---|
| 1776 | const StdString & time_bounds, \ |
---|
| 1777 | const StdString & standard_name, \ |
---|
| 1778 | const StdString & long_name)", << msg); |
---|
[498] | 1779 | } |
---|
[219] | 1780 | } |
---|
[488] | 1781 | |
---|
[219] | 1782 | //--------------------------------------------------------------- |
---|
| 1783 | |
---|
| 1784 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
| 1785 | const StdString & axis, |
---|
| 1786 | const StdString & standard_name, |
---|
| 1787 | const StdString & long_name, |
---|
| 1788 | const StdString & units, |
---|
| 1789 | const StdString & nav_model) |
---|
| 1790 | { |
---|
[498] | 1791 | try |
---|
| 1792 | { |
---|
[613] | 1793 | if (!axis.empty()) |
---|
| 1794 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
| 1795 | |
---|
[498] | 1796 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 1797 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
| 1798 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
| 1799 | SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
| 1800 | } |
---|
| 1801 | catch (CNetCdfException& e) |
---|
| 1802 | { |
---|
| 1803 | StdString msg("On writing Axis Attribute: "); |
---|
| 1804 | msg.append("In the context : "); |
---|
| 1805 | CContext* context = CContext::getCurrent() ; |
---|
| 1806 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1807 | msg.append(e.what()); |
---|
| 1808 | ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 1809 | const StdString & axis, \ |
---|
| 1810 | const StdString & standard_name, \ |
---|
| 1811 | const StdString & long_name, \ |
---|
| 1812 | const StdString & units, \ |
---|
| 1813 | const StdString & nav_model)", << msg); |
---|
[498] | 1814 | } |
---|
[219] | 1815 | } |
---|
| 1816 | |
---|
| 1817 | //--------------------------------------------------------------- |
---|
[488] | 1818 | |
---|
[219] | 1819 | void CNc4DataOutput::writeLocalAttributes |
---|
| 1820 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
| 1821 | { |
---|
[498] | 1822 | try |
---|
| 1823 | { |
---|
[318] | 1824 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
| 1825 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
| 1826 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
| 1827 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
[498] | 1828 | } |
---|
| 1829 | catch (CNetCdfException& e) |
---|
| 1830 | { |
---|
| 1831 | StdString msg("On writing Local Attributes: "); |
---|
| 1832 | msg.append("In the context : "); |
---|
| 1833 | CContext* context = CContext::getCurrent() ; |
---|
| 1834 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1835 | msg.append(e.what()); |
---|
| 1836 | ERROR("CNc4DataOutput::writeLocalAttributes \ |
---|
| 1837 | (int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg); |
---|
| 1838 | } |
---|
| 1839 | |
---|
[219] | 1840 | } |
---|
| 1841 | |
---|
[628] | 1842 | void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid, |
---|
| 1843 | int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
[391] | 1844 | { |
---|
| 1845 | CArray<int,1> array(2) ; |
---|
| 1846 | |
---|
[498] | 1847 | try |
---|
| 1848 | { |
---|
| 1849 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
| 1850 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
[629] | 1851 | array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1; |
---|
[498] | 1852 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
| 1853 | array=ni_glo,nj_glo ; |
---|
| 1854 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
| 1855 | array=ni,nj ; |
---|
| 1856 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
| 1857 | array=ibegin,jbegin ; |
---|
| 1858 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
| 1859 | array=ibegin+ni-1,jbegin+nj-1 ; |
---|
| 1860 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
| 1861 | array=0,0 ; |
---|
| 1862 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
| 1863 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
| 1864 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
| 1865 | /* |
---|
| 1866 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
| 1867 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
| 1868 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
| 1869 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
| 1870 | */ |
---|
| 1871 | } |
---|
| 1872 | catch (CNetCdfException& e) |
---|
| 1873 | { |
---|
[628] | 1874 | StdString msg("On writing Local Attributes IOIPSL \n"); |
---|
[498] | 1875 | msg.append("In the context : "); |
---|
| 1876 | CContext* context = CContext::getCurrent() ; |
---|
| 1877 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1878 | msg.append(e.what()); |
---|
| 1879 | ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \ |
---|
| 1880 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg); |
---|
| 1881 | } |
---|
[391] | 1882 | } |
---|
[219] | 1883 | //--------------------------------------------------------------- |
---|
| 1884 | |
---|
| 1885 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
| 1886 | const StdString & description, |
---|
| 1887 | const StdString & conventions, |
---|
| 1888 | const StdString & production, |
---|
| 1889 | const StdString & timeStamp) |
---|
| 1890 | { |
---|
[498] | 1891 | try |
---|
| 1892 | { |
---|
| 1893 | SuperClassWriter::addAttribute("name" , name); |
---|
| 1894 | SuperClassWriter::addAttribute("description", description); |
---|
[613] | 1895 | SuperClassWriter::addAttribute("title" , description); |
---|
| 1896 | SuperClassWriter::addAttribute("Conventions", conventions); |
---|
[498] | 1897 | SuperClassWriter::addAttribute("production" , production); |
---|
| 1898 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
---|
| 1899 | } |
---|
| 1900 | catch (CNetCdfException& e) |
---|
| 1901 | { |
---|
| 1902 | StdString msg("On writing File Attributes \n "); |
---|
| 1903 | msg.append("In the context : "); |
---|
| 1904 | CContext* context = CContext::getCurrent() ; |
---|
| 1905 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1906 | msg.append(e.what()); |
---|
| 1907 | ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \ |
---|
| 1908 | const StdString & description, \ |
---|
| 1909 | const StdString & conventions, \ |
---|
| 1910 | const StdString & production, \ |
---|
| 1911 | const StdString & timeStamp)", << msg); |
---|
| 1912 | } |
---|
[219] | 1913 | } |
---|
| 1914 | |
---|
| 1915 | //--------------------------------------------------------------- |
---|
| 1916 | |
---|
| 1917 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
| 1918 | int data_dim, |
---|
| 1919 | int data_ni, |
---|
| 1920 | int data_nj, |
---|
| 1921 | int data_ibegin, |
---|
| 1922 | int data_jbegin) |
---|
| 1923 | { |
---|
[498] | 1924 | try |
---|
| 1925 | { |
---|
| 1926 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
| 1927 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
| 1928 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
| 1929 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
| 1930 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
| 1931 | } |
---|
| 1932 | catch (CNetCdfException& e) |
---|
| 1933 | { |
---|
| 1934 | StdString msg("On writing Mask Attributes \n "); |
---|
| 1935 | msg.append("In the context : "); |
---|
| 1936 | CContext* context = CContext::getCurrent() ; |
---|
| 1937 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1938 | msg.append(e.what()); |
---|
| 1939 | ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \ |
---|
| 1940 | int data_dim, \ |
---|
| 1941 | int data_ni, \ |
---|
| 1942 | int data_nj, \ |
---|
| 1943 | int data_ibegin, \ |
---|
| 1944 | int data_jbegin)", << msg); |
---|
| 1945 | } |
---|
[219] | 1946 | } |
---|
| 1947 | |
---|
| 1948 | ///-------------------------------------------------------------- |
---|
| 1949 | |
---|
[707] | 1950 | StdSize CNc4DataOutput::getRecordFromTime(Time time) |
---|
| 1951 | { |
---|
| 1952 | std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time); |
---|
| 1953 | if (it == timeToRecordCache.end()) |
---|
| 1954 | { |
---|
| 1955 | StdString timeAxisBoundsId("time_counter_bounds"); |
---|
| 1956 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) |
---|
| 1957 | timeAxisBoundsId = "time_instant_bounds"; |
---|
| 1958 | |
---|
| 1959 | CArray<double,2> timeAxisBounds; |
---|
| 1960 | SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective); |
---|
| 1961 | |
---|
| 1962 | StdSize record = 0; |
---|
| 1963 | double dtime(time); |
---|
| 1964 | for (int n = timeAxisBounds.extent(1) - 1; n >= 0; n--) |
---|
| 1965 | { |
---|
| 1966 | if (timeAxisBounds(1, n) < dtime) |
---|
| 1967 | { |
---|
| 1968 | record = n + 1; |
---|
| 1969 | break; |
---|
| 1970 | } |
---|
| 1971 | } |
---|
| 1972 | it = timeToRecordCache.insert(std::make_pair(time, record)).first; |
---|
| 1973 | } |
---|
| 1974 | return it->second; |
---|
| 1975 | } |
---|
[774] | 1976 | |
---|
| 1977 | ///-------------------------------------------------------------- |
---|
| 1978 | |
---|
| 1979 | bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const |
---|
| 1980 | { |
---|
| 1981 | return (this->writtenDomains.find(domainName) != this->writtenDomains.end()); |
---|
| 1982 | } |
---|
| 1983 | |
---|
| 1984 | bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const |
---|
| 1985 | { |
---|
| 1986 | return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end()); |
---|
| 1987 | } |
---|
| 1988 | |
---|
| 1989 | bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const |
---|
| 1990 | { |
---|
| 1991 | return (this->writtenAxis.find(axisName) != this->writtenAxis.end()); |
---|
| 1992 | } |
---|
| 1993 | |
---|
| 1994 | bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const |
---|
| 1995 | { |
---|
| 1996 | return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end()); |
---|
| 1997 | } |
---|
| 1998 | |
---|
| 1999 | void CNc4DataOutput::setWrittenDomain(const std::string& domainName) |
---|
| 2000 | { |
---|
| 2001 | this->writtenDomains.insert(domainName); |
---|
| 2002 | } |
---|
| 2003 | |
---|
| 2004 | void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName) |
---|
| 2005 | { |
---|
| 2006 | this->writtenCompressedDomains.insert(domainName); |
---|
| 2007 | } |
---|
| 2008 | |
---|
| 2009 | void CNc4DataOutput::setWrittenAxis(const std::string& axisName) |
---|
| 2010 | { |
---|
| 2011 | this->writtenAxis.insert(axisName); |
---|
| 2012 | } |
---|
| 2013 | |
---|
| 2014 | void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName) |
---|
| 2015 | { |
---|
| 2016 | this->writtenCompressedAxis.insert(axisName); |
---|
| 2017 | } |
---|
[335] | 2018 | } // namespace xios |
---|