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source: XIOS/trunk/src/io/nc4_data_output.cpp @ 1573

Last change on this file since 1573 was 1559, checked in by oabramkina, 6 years ago
Replacing axis zoom by axis extract. Zoom private attributes are gone for good.
Property copyright set to Software name : XIOS (Xml I/O Server) http://forge.ipsl.jussieu.fr/ioserver Creation date : January 2009 Licence : CeCCIL version2 see license file in root directory : Licence_CeCILL_V2-en.txt or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement) CNRS/IPSL (Institut Pierre Simon Laplace) Project Manager : Yann Meurdesoif yann.meurdesoif@cea.fr Property svn:executable set to ``*
File size: 131.7 KB

Rev	Line
[219]	1	#include "nc4_data_output.hpp"
	2
[352]	3	#include "attribute_template.hpp"
	4	#include "group_template.hpp"
[219]	5
	6	#include "file.hpp"
	7	#include "calendar.hpp"
[278]	8	#include "context.hpp"
[300]	9	#include "context_server.hpp"
[498]	10	#include "netCdfException.hpp"
	11	#include "exception.hpp"
[1158]	12	#include "timer.hpp"
	13	#include "uuid.hpp"
[335]	14	namespace xios
[219]	15	{
[878]	16	/// ////////////////////// Dfinitions ////////////////////// ///
[219]	17	CNc4DataOutput::CNc4DataOutput
[1158]	18	(CFile* file, const StdString & filename, bool exist)
[219]	19	: SuperClass()
	20	, SuperClassWriter(filename, exist)
	21	, filename(filename)
[1158]	22	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
[219]	23	{
[1158]	24	SuperClass::type = MULTI_FILE;
[1456]	25	compressionLevel= file->compression_level.isEmpty() ? 0 :file->compression_level ;
[219]	26	}
	27
	28	CNc4DataOutput::CNc4DataOutput
[1158]	29	(CFile* file, const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention,
[924]	30	MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName)
[219]	31	: SuperClass()
[878]	32	, SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName)
[379]	33	, comm_file(comm_file)
[219]	34	, filename(filename)
[335]	35	, isCollective(isCollective)
[1158]	36	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
[219]	37	{
[1158]	38	SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE;
[1459]	39	if (file==NULL) compressionLevel = 0 ;
	40	else compressionLevel= file->compression_level.isEmpty() ? 0 :file->compression_level ;
[219]	41	}
	42
	43	CNc4DataOutput::~CNc4DataOutput(void)
[879]	44	{ /* Ne rien faire de plus */ }
[219]	45
	46	///--------------------------------------------------------------
	47
	48	const StdString & CNc4DataOutput::getFileName(void) const
	49	{
	50	return (this->filename);
	51	}
	52
	53	//---------------------------------------------------------------
	54
[347]	55	void CNc4DataOutput::writeDomain_(CDomain* domain)
[219]	56	{
[1391]	57	StdString lonName,latName ;
	58
[1129]	59	domain->computeWrittenIndex();
[1249]	60	domain->computeWrittenCompressedIndex(comm_file);
	61
[881]	62	if (domain->type == CDomain::type_attr::unstructured)
	63	{
	64	if (SuperClassWriter::useCFConvention)
	65	writeUnstructuredDomain(domain) ;
	66	else
	67	writeUnstructuredDomainUgrid(domain) ;
	68	return ;
	69	}
[488]	70
[347]	71	CContext* context = CContext::getCurrent() ;
[300]	72	CContextServer* server=context->server ;
[488]	73
[219]	74	if (domain->IsWritten(this->filename)) return;
	75	domain->checkAttributes();
[488]	76
	77	if (domain->isEmpty())
[881]	78	if (SuperClass::type==MULTI_FILE) return;
[219]	79
	80	std::vector<StdString> dim0, dim1;
[772]	81	StdString domid = domain->getDomainOutputName();
[318]	82	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
[706]	83	if (isWrittenDomain(domid)) return ;
[774]	84	else setWrittenDomain(domid);
[1132]	85
	86	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
[449]	87
[488]	88
[1158]	89	StdString dimXid, dimYid ;
	90
	91	nc_type typePrec ;
	92	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	93	else if (domain->prec==4) typePrec = NC_FLOAT ;
	94	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	95
[664]	96	bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear);
[449]	97	switch (domain->type)
[433]	98	{
[449]	99	case CDomain::type_attr::curvilinear :
[1391]	100
	101	if (domain->lon_name.isEmpty()) lonName = "nav_lon";
	102	else lonName = domain->lon_name;
	103
	104	if (domain->lat_name.isEmpty()) latName = "nav_lat";
	105	else latName = domain->lat_name;
	106
[1430]	107	if (domain->dim_i_name.isEmpty()) dimXid=StdString("x").append(appendDomid);
	108	else dimXid=domain->dim_i_name.getValue() + appendDomid;
	109
	110	if (domain->dim_j_name.isEmpty()) dimYid=StdString("y").append(appendDomid);
	111	else dimYid=domain->dim_j_name.getValue() + appendDomid;
	112
[449]	113	break ;
[1391]	114
[664]	115	case CDomain::type_attr::rectilinear :
[1391]	116
[1430]	117	if (domain->lon_name.isEmpty())
	118	{
	119	if (domain->dim_i_name.isEmpty())
	120	lonName = "lon";
	121	else
	122	lonName = domain->dim_i_name.getValue();
	123	}
[1391]	124	else lonName = domain->lon_name;
	125
[1430]	126	if (domain->lat_name.isEmpty())
	127	{
	128	if (domain->dim_j_name.isEmpty())
	129	latName = "lat";
	130	else
	131	latName = domain->dim_j_name.getValue();
	132	}
[1391]	133	else latName = domain->lat_name;
	134
[1430]	135	if (domain->dim_i_name.isEmpty()) dimXid = lonName+appendDomid;
	136	else dimXid = domain->dim_i_name.getValue()+appendDomid;
	137
	138	if (domain->dim_j_name.isEmpty()) dimYid = latName+appendDomid;
	139	else dimYid = domain->dim_j_name.getValue()+appendDomid;
[449]	140	break;
[488]	141	}
	142
[617]	143	StdString dimVertId = StdString("nvertex").append(appendDomid);
	144
[449]	145	string lonid,latid,bounds_lonid,bounds_latid ;
[611]	146	string areaId = "area" + appendDomid;
[391]	147	/*
[300]	148	StdString lonid_loc = (server->intraCommSize > 1)
[318]	149	? StdString("lon").append(appendDomid).append("_local")
[278]	150	: lonid;
[300]	151	StdString latid_loc = (server->intraCommSize > 1)
[318]	152	? StdString("lat").append(appendDomid).append("_local")
[278]	153	: latid;
[391]	154	*/
[219]	155
[1129]	156	CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
	157	int nbWritten = indexToWrite.numElements();
	158	CArray<double,1> writtenLat, writtenLon;
	159	CArray<double,2> writtenBndsLat, writtenBndsLon;
	160	CArray<double,1> writtenArea;
	161
	162	if (domain->hasLonLat)
	163	{
	164	writtenLat.resize(nbWritten);
	165	writtenLon.resize(nbWritten);
	166	for (int idx = 0; idx < nbWritten; ++idx)
	167	{
[1390]	168	if (idx < domain->latvalue.numElements())
	169	{
	170	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
	171	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
	172	}
	173	else
	174	{
	175	writtenLat(idx) = 0.;
	176	writtenLon(idx) = 0.;
	177	}
[1129]	178	}
	179
	180
	181	if (domain->hasBounds)
	182	{
	183	int nvertex = domain->nvertex, idx;
	184	writtenBndsLat.resize(nvertex, nbWritten);
	185	writtenBndsLon.resize(nvertex, nbWritten);
	186	CArray<double,2>& boundslat = domain->bounds_latvalue;
	187	CArray<double,2>& boundslon = domain->bounds_lonvalue;
	188	for (idx = 0; idx < nbWritten; ++idx)
	189	for (int nv = 0; nv < nvertex; ++nv)
	190	{
[1390]	191	if (idx < boundslat.columns())
	192	{
	193	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
	194	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
	195	}
	196	else
	197	{
	198	writtenBndsLat(nv, idx) = 0.;
	199	writtenBndsLon(nv, idx) = 0.;
	200	}
[1129]	201	}
	202	}
	203	}
	204
	205	if (domain->hasArea)
	206	{
	207	writtenArea.resize(nbWritten);
	208	for (int idx = 0; idx < nbWritten; ++idx)
	209	{
[1390]	210	if (idx < domain->areavalue.numElements())
	211	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
	212	else
	213	writtenArea(idx) = 0.;
[1129]	214	}
	215	}
	216
[498]	217	try
[219]	218	{
[498]	219	switch (SuperClass::type)
	220	{
	221	case (MULTI_FILE) :
	222	{
	223	switch (domain->type)
	224	{
	225	case CDomain::type_attr::curvilinear :
	226	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1415]	227	lonid = lonName+appendDomid;
	228	latid = latName+appendDomid;
[498]	229	break ;
[664]	230	case CDomain::type_attr::rectilinear :
[1415]	231	lonid = lonName+appendDomid;
	232	latid = latName+appendDomid;
[498]	233	dim0.push_back(dimYid);
	234	dim1.push_back(dimXid);
	235	break;
	236	}
[1430]	237	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	238	else bounds_lonid = "bounds_"+lonName+appendDomid;
	239	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	240	else bounds_latid = "bounds_"+latName+appendDomid;
[488]	241
[1553]	242	SuperClassWriter::addDimension(dimXid, domain->ni);
	243	SuperClassWriter::addDimension(dimYid, domain->nj);
[488]	244
[617]	245	if (domain->hasBounds)
	246	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	247
[498]	248	if (server->intraCommSize > 1)
	249	{
[1553]	250	this->writeLocalAttributes(domain->ibegin,
	251	domain->ni,
	252	domain->jbegin,
	253	domain->nj,
[616]	254	appendDomid);
[488]	255
[628]	256	if (singleDomain)
	257	this->writeLocalAttributes_IOIPSL(dimXid, dimYid,
[1553]	258	domain->ibegin,
	259	domain->ni,
	260	domain->jbegin,
	261	domain->nj,
[628]	262	domain->ni_glo,domain->nj_glo,
	263	server->intraCommRank,server->intraCommSize);
[449]	264	}
[488]	265
[665]	266	if (domain->hasLonLat)
[498]	267	{
[665]	268	switch (domain->type)
	269	{
	270	case CDomain::type_attr::curvilinear :
[1456]	271	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	272	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	273	break ;
	274	case CDomain::type_attr::rectilinear :
[1456]	275	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	276	SuperClassWriter::addVariable(lonid, typePrec, dim1, compressionLevel);
[665]	277	break ;
	278	}
[488]	279
[665]	280	this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
	281	this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
[219]	282
[665]	283	if (domain->hasBounds)
	284	{
	285	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
	286	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
[617]	287
[665]	288	dim0.clear();
	289	dim0.push_back(dimYid);
	290	dim0.push_back(dimXid);
	291	dim0.push_back(dimVertId);
[1456]	292	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	293	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[665]	294	}
[617]	295	}
	296
[498]	297	dim0.clear();
[616]	298	dim0.push_back(dimYid);
[498]	299	dim0.push_back(dimXid);
[219]	300
	301
[498]	302	// supress mask if (server->intraCommSize > 1)
	303	// supress mask {
	304	// supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0);
	305	// supress mask
	306	// supress mask this->writeMaskAttributes(maskid,
	307	// supress mask domain->data_dim.getValue()/*,
	308	// supress mask domain->data_ni.getValue(),
	309	// supress mask domain->data_nj.getValue(),
	310	// supress mask domain->data_ibegin.getValue(),
	311	// supress mask domain->data_jbegin.getValue()*/);
	312	// supress mask }
[488]	313
[498]	314	//SuperClassWriter::setDefaultValue(maskid, &dvm);
[219]	315
[611]	316	if (domain->hasArea)
	317	{
[1456]	318	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	319	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	320	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	321	}
	322
[498]	323	SuperClassWriter::definition_end();
[449]	324
[665]	325	if (domain->hasLonLat)
[498]	326	{
[665]	327	switch (domain->type)
	328	{
[1129]	329	case CDomain::type_attr::curvilinear :
	330	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
	331	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
[665]	332	break;
	333	case CDomain::type_attr::rectilinear :
[1553]	334	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->ni)) ;
[665]	335	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
[1553]	336	CArray<double,1> lon = writtenLon(Range(0,domain->ni-1)) ;
[665]	337	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
	338	break;
	339	}
[611]	340
[665]	341	if (domain->hasBounds)
	342	{
[1129]	343	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
	344	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
[665]	345	}
[617]	346	}
	347
[611]	348	if (domain->hasArea)
[1129]	349	{
[1132]	350	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
[1129]	351	}
	352
[498]	353	SuperClassWriter::definition_start();
[219]	354
[498]	355	break;
	356	}
	357	case (ONE_FILE) :
	358	{
[1553]	359	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
	360	SuperClassWriter::addDimension(dimYid, domain->nj_glo);
[286]	361
[617]	362	if (domain->hasBounds)
	363	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	364
[665]	365	if (domain->hasLonLat)
[498]	366	{
[665]	367	switch (domain->type)
	368	{
	369	case CDomain::type_attr::curvilinear :
	370	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1415]	371	lonid = lonName+appendDomid;
	372	latid = latName+appendDomid;
[1456]	373	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	374	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	375	break;
[449]	376
[665]	377	case CDomain::type_attr::rectilinear :
	378	dim0.push_back(dimYid);
	379	dim1.push_back(dimXid);
[1415]	380	lonid = lonName+appendDomid;
	381	latid = latName+appendDomid;
[1456]	382	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	383	SuperClassWriter::addVariable(lonid, typePrec, dim1, compressionLevel);
[665]	384	break;
	385	}
[1430]	386	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	387	else bounds_lonid = "bounds_"+lonName+appendDomid;
	388	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	389	else bounds_latid = "bounds_"+latName+appendDomid;
[665]	390
	391	this->writeAxisAttributes
	392	(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
	393	this->writeAxisAttributes
	394	(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
	395
	396	if (domain->hasBounds)
	397	{
	398	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
	399	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
	400
	401	dim0.clear();
[498]	402	dim0.push_back(dimYid);
[665]	403	dim0.push_back(dimXid);
	404	dim0.push_back(dimVertId);
[1456]	405	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	406	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[665]	407	}
[498]	408	}
[611]	409
	410	if (domain->hasArea)
	411	{
	412	dim0.clear();
	413	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1456]	414	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	415	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	416	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	417	dim0.clear();
	418	}
	419
	420	SuperClassWriter::definition_end();
[286]	421
[498]	422	switch (domain->type)
[384]	423	{
[498]	424	case CDomain::type_attr::curvilinear :
[449]	425	{
[498]	426	std::vector<StdSize> start(2) ;
	427	std::vector<StdSize> count(2) ;
	428	if (domain->isEmpty())
	429	{
[611]	430	start[0]=0 ; start[1]=0 ;
[498]	431	count[0]=0 ; count[1]=0 ;
	432	}
	433	else
	434	{
[1553]	435	start[1]=domain->ibegin;
	436	start[0]=domain->jbegin;
	437	count[1]=domain->ni ; count[0]=domain->nj ;
[498]	438	}
[488]	439
[665]	440	if (domain->hasLonLat)
	441	{
[1129]	442	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	443	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	444	}
[498]	445	break;
	446	}
[664]	447	case CDomain::type_attr::rectilinear :
[449]	448	{
[665]	449	if (domain->hasLonLat)
[498]	450	{
[665]	451	std::vector<StdSize> start(1) ;
	452	std::vector<StdSize> count(1) ;
	453	if (domain->isEmpty())
	454	{
	455	start[0]=0 ;
	456	count[0]=0 ;
[1129]	457	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	458	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	459	}
	460	else
[1129]	461	{
[1553]	462	start[0]=domain->jbegin;
	463	count[0]=domain->nj;
	464	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->ni));
[665]	465	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count);
	466
[1553]	467	start[0]=domain->ibegin;
	468	count[0]=domain->ni;
	469	CArray<double,1> lon = writtenLon(Range(0,domain->ni-1));
[665]	470	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count);
	471	}
[498]	472	}
	473	break;
[449]	474	}
[384]	475	}
[611]	476
[617]	477	if (domain->hasBounds)
	478	{
	479	std::vector<StdSize> start(3);
	480	std::vector<StdSize> count(3);
	481	if (domain->isEmpty())
	482	{
	483	start[2] = start[1] = start[0] = 0;
	484	count[2] = count[1] = count[0] = 0;
	485	}
	486	else
	487	{
	488	start[2] = 0;
[1553]	489	start[1] = domain->ibegin;
	490	start[0] = domain->jbegin;
[1099]	491	count[2] = domain->nvertex;
[1553]	492	count[1] = domain->ni;
	493	count[0] = domain->nj;
[617]	494	}
[1143]	495
[1129]	496	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count);
	497	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count);
[617]	498	}
	499
[611]	500	if (domain->hasArea)
	501	{
	502	std::vector<StdSize> start(2);
	503	std::vector<StdSize> count(2);
	504
	505	if (domain->isEmpty())
	506	{
	507	start[0] = 0; start[1] = 0;
	508	count[0] = 0; count[1] = 0;
	509	}
	510	else
	511	{
[1553]	512	start[1] = domain->ibegin;
	513	start[0] = domain->jbegin;
	514	count[1] = domain->ni;
	515	count[0] = domain->nj;
[611]	516	}
[1143]	517
[1129]	518	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
[611]	519	}
	520
[498]	521	SuperClassWriter::definition_start();
	522	break;
	523	}
	524	default :
	525	ERROR("CNc4DataOutput::writeDomain(domain)",
	526	<< "[ type = " << SuperClass::type << "]"
	527	<< " not implemented yet !");
	528	}
[449]	529	}
[498]	530	catch (CNetCdfException& e)
	531	{
	532	StdString msg("On writing the domain : ");
	533	msg.append(domid); msg.append("\n");
	534	msg.append("In the context : ");
	535	msg.append(context->getId()); msg.append("\n");
	536	msg.append(e.what());
	537	ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg);
	538	}
	539
[449]	540	domain->addRelFile(this->filename);
	541	}
	542
[879]	543	//--------------------------------------------------------------
[878]	544
[879]	545	void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)
	546	{
	547	CContext* context = CContext::getCurrent() ;
	548	CContextServer* server=context->server ;
[878]	549
[879]	550	if (domain->IsWritten(this->filename)) return;
[1494]	551
	552	StdString domid = domain->getDomainOutputName();
	553
	554	// The first domain for the same mesh that will be written is that with the highest value of nvertex.
	555	// Thus the entire mesh connectivity will be generated at once.
	556	if (isWrittenDomain(domid)) return ;
	557	else setWrittenDomain(domid);
	558
[879]	559	domain->checkAttributes();
	560	if (domain->isEmpty())
	561	if (SuperClass::type==MULTI_FILE) return ;
[878]	562
[1158]	563	nc_type typePrec ;
	564	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	565	else if (domain->prec==4) typePrec = NC_FLOAT ;
	566	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	567
[879]	568	std::vector<StdString> dim0;
	569	StdString domainName = domain->name;
[924]	570	domain->assignMesh(domainName, domain->nvertex);
[1025]	571	domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue);
[878]	572
[879]	573	StdString node_x = domainName + "_node_x";
	574	StdString node_y = domainName + "_node_y";
[878]	575
[879]	576	StdString edge_x = domainName + "_edge_x";
	577	StdString edge_y = domainName + "_edge_y";
	578	StdString edge_nodes = domainName + "_edge_nodes";
[878]	579
[879]	580	StdString face_x = domainName + "_face_x";
	581	StdString face_y = domainName + "_face_y";
	582	StdString face_nodes = domainName + "_face_nodes";
[902]	583	StdString face_edges = domainName + "_face_edges";
	584	StdString edge_faces = domainName + "_edge_face_links";
	585	StdString face_faces = domainName + "_face_links";
[878]	586
[879]	587	StdString dimNode = "n" + domainName + "_node";
	588	StdString dimEdge = "n" + domainName + "_edge";
	589	StdString dimFace = "n" + domainName + "_face";
	590	StdString dimVertex = "n" + domainName + "_vertex";
	591	StdString dimTwo = "Two";
[878]	592
[879]	593	if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2);
[1494]	594	dim0.clear();
	595	SuperClassWriter::addVariable(domainName, NC_INT, dim0, compressionLevel);
	596	SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName);
	597	SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName);
	598	SuperClassWriter::addAttribute("topology_dimension", 2, &domainName);
	599	SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName);
[878]	600
[879]	601	try
	602	{
	603	switch (SuperClass::type)
	604	{
	605	case (ONE_FILE) :
	606	{
	607	// Adding nodes
	608	if (domain->nvertex == 1)
	609	{
	610	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	611	{
[902]	612	SuperClassWriter::addDimension(dimNode, domain->ni_glo);
[879]	613	dim0.clear();
	614	dim0.push_back(dimNode);
[1456]	615	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	616	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	617	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	618	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	619	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	620	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	621	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	622	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	623	}
	624	} // domain->nvertex == 1
[878]	625
[879]	626	// Adding edges and nodes, if nodes have not been defined previously
	627	if (domain->nvertex == 2)
	628	{
	629	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	630	{
[924]	631	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
[879]	632	dim0.clear();
	633	dim0.push_back(dimNode);
[1456]	634	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	635	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	636	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	637	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	638	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	639	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	640	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	641	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	642	}
[924]	643	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
	644	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
	645	SuperClassWriter::addDimension(dimEdge, domain->ni_glo);
	646	dim0.clear();
	647	dim0.push_back(dimEdge);
[1456]	648	SuperClassWriter::addVariable(edge_x, typePrec, dim0, compressionLevel);
[924]	649	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
	650	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
	651	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
[1456]	652	SuperClassWriter::addVariable(edge_y, typePrec, dim0, compressionLevel);
[924]	653	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
	654	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
	655	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
	656	dim0.clear();
	657	dim0.push_back(dimEdge);
	658	dim0.push_back(dimTwo);
[1456]	659	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0, compressionLevel);
[924]	660	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
	661	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
	662	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
[879]	663	} // domain->nvertex == 2
[878]	664
[879]	665	// Adding faces, edges, and nodes, if edges and nodes have not been defined previously
	666	if (domain->nvertex > 2)
	667	{
	668	// Nodes
	669	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	670	{
[924]	671	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
[879]	672	dim0.clear();
	673	dim0.push_back(dimNode);
[1456]	674	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	675	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	676	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	677	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	678	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	679	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	680	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	681	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	682	}
	683	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
	684	{
	685	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
	686	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
[924]	687	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo);
[879]	688	dim0.clear();
	689	dim0.push_back(dimEdge);
[1456]	690	SuperClassWriter::addVariable(edge_x, typePrec, dim0, compressionLevel);
[879]	691	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
[924]	692	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
[879]	693	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
[1456]	694	SuperClassWriter::addVariable(edge_y, typePrec, dim0, compressionLevel);
[879]	695	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
[924]	696	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
[879]	697	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
	698	dim0.clear();
	699	dim0.push_back(dimEdge);
	700	dim0.push_back(dimTwo);
[1456]	701	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0, compressionLevel);
[879]	702	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
	703	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
	704	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
	705	}
[924]	706	SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName);
	707	SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName);
	708	SuperClassWriter::addDimension(dimFace, domain->ni_glo);
	709	SuperClassWriter::addDimension(dimVertex, domain->nvertex);
	710	dim0.clear();
	711	dim0.push_back(dimFace);
[1456]	712	SuperClassWriter::addVariable(face_x, typePrec, dim0, compressionLevel);
[924]	713	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x);
	714	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x);
	715	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x);
[1456]	716	SuperClassWriter::addVariable(face_y, typePrec, dim0, compressionLevel);
[924]	717	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y);
	718	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y);
	719	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y);
	720	dim0.clear();
	721	dim0.push_back(dimFace);
	722	dim0.push_back(dimVertex);
[1456]	723	SuperClassWriter::addVariable(face_nodes, NC_INT, dim0, compressionLevel);
[924]	724	SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes);
	725	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes);
	726	SuperClassWriter::addAttribute("start_index", 0, &face_nodes);
	727	dim0.clear();
	728	dim0.push_back(dimFace);
	729	dim0.push_back(dimVertex);
[1456]	730	SuperClassWriter::addVariable(face_edges, NC_INT, dim0, compressionLevel);
[924]	731	SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges);
	732	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges);
	733	SuperClassWriter::addAttribute("start_index", 0, &face_edges);
[929]	734	SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges);
[924]	735	dim0.clear();
	736	dim0.push_back(dimEdge);
	737	dim0.push_back(dimTwo);
[1456]	738	SuperClassWriter::addVariable(edge_faces, NC_INT, dim0, compressionLevel);
[924]	739	SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces);
	740	SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces);
	741	SuperClassWriter::addAttribute("start_index", 0, &edge_faces);
	742	SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces);
	743	SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces);
	744	dim0.clear();
	745	dim0.push_back(dimFace);
	746	dim0.push_back(dimVertex);
[1456]	747	SuperClassWriter::addVariable(face_faces, NC_INT, dim0, compressionLevel);
[924]	748	SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces);
	749	SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces);
	750	SuperClassWriter::addAttribute("start_index", 0, &face_faces);
[929]	751	SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces);
[924]	752	SuperClassWriter::addAttribute("flag_values", -1, &face_faces);
	753	SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces);
[879]	754	} // domain->nvertex > 2
[878]	755
[879]	756	SuperClassWriter::definition_end();
[878]	757
[924]	758	std::vector<StdSize> startEdges(1) ;
	759	std::vector<StdSize> countEdges(1) ;
	760	std::vector<StdSize> startNodes(1) ;
	761	std::vector<StdSize> countNodes(1) ;
	762	std::vector<StdSize> startFaces(1) ;
	763	std::vector<StdSize> countFaces(1) ;
	764	std::vector<StdSize> startEdgeNodes(2) ;
	765	std::vector<StdSize> countEdgeNodes(2) ;
	766	std::vector<StdSize> startEdgeFaces(2) ;
	767	std::vector<StdSize> countEdgeFaces(2) ;
	768	std::vector<StdSize> startFaceConctv(2) ;
	769	std::vector<StdSize> countFaceConctv(2) ;
[902]	770
[1494]	771	if (domain->nvertex == 1)
[879]	772	{
[1494]	773	if (domain->isEmpty())
	774	{
	775	startNodes[0]=0 ;
	776	countNodes[0]=0 ;
	777	}
	778	else
	779	{
[1553]	780	startNodes[0] = domain->ibegin;
	781	countNodes[0] = domain->ni ;
[1494]	782	}
[924]	783
[1494]	784	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	785	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	786	}
	787	else if (domain->nvertex == 2)
	788	{
	789	if (domain->isEmpty())
	790	{
	791	startEdges[0]=0 ;
	792	countEdges[0]=0 ;
	793	startNodes[0]=0 ;
	794	countNodes[0]=0 ;
	795	startEdgeNodes[0]=0;
	796	startEdgeNodes[1]=0;
	797	countEdgeNodes[0]=0;
	798	countEdgeNodes[1]=0;
[924]	799
[1494]	800	}
	801	else
	802	{
[1553]	803	startEdges[0] = domain->ibegin;
	804	countEdges[0] = domain->ni;
[1494]	805	startNodes[0] = domain->mesh->node_start;
	806	countNodes[0] = domain->mesh->node_count;
[1553]	807	startEdgeNodes[0] = domain->ibegin;
[1494]	808	startEdgeNodes[1] = 0;
[1553]	809	countEdgeNodes[0] = domain->ni;
[1494]	810	countEdgeNodes[1] = 2;
	811	}
	812	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	813	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	814	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	815	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	816	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
	817	}
[879]	818	else
	819	{
[1494]	820	if (domain->isEmpty())
	821	{
	822	startFaces[0] = 0 ;
	823	countFaces[0] = 0 ;
	824	startNodes[0] = 0;
	825	countNodes[0] = 0;
	826	startEdges[0] = 0;
	827	countEdges[0] = 0;
	828	startEdgeFaces[0] = 0;
	829	startEdgeFaces[1] = 0;
	830	countEdgeFaces[0] = 0;
	831	countEdgeFaces[1] = 0;
	832	startFaceConctv[0] = 0;
	833	startFaceConctv[1] = 0;
	834	countFaceConctv[0] = 0;
	835	countFaceConctv[1] = 0;
	836	}
	837	else
	838	{
[1553]	839	startFaces[0] = domain->ibegin;
	840	countFaces[0] = domain->ni ;
[1494]	841	startNodes[0] = domain->mesh->node_start;
	842	countNodes[0] = domain->mesh->node_count;
	843	startEdges[0] = domain->mesh->edge_start;
	844	countEdges[0] = domain->mesh->edge_count;
	845	startEdgeNodes[0] = domain->mesh->edge_start;
	846	startEdgeNodes[1] = 0;
	847	countEdgeNodes[0] = domain->mesh->edge_count;
	848	countEdgeNodes[1]= 2;
	849	startEdgeFaces[0] = domain->mesh->edge_start;
	850	startEdgeFaces[1]= 0;
	851	countEdgeFaces[0] = domain->mesh->edge_count;
	852	countEdgeFaces[1]= 2;
[1553]	853	startFaceConctv[0] = domain->ibegin;
[1494]	854	startFaceConctv[1] = 0;
[1553]	855	countFaceConctv[0] = domain->ni;
[1494]	856	countFaceConctv[1] = domain->nvertex;
	857	}
	858	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	859	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	860	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	861	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	862	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
	863	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
	864	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
	865	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
	866	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
	867	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
	868	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
	869	}
[879]	870	SuperClassWriter::definition_start();
[878]	871
[879]	872	break;
	873	} // ONE_FILE
[878]	874
[879]	875	case (MULTI_FILE) :
	876	{
	877	break;
	878	}
[878]	879
[879]	880	default :
	881	ERROR("CNc4DataOutput::writeDomain(domain)",
	882	<< "[ type = " << SuperClass::type << "]"
	883	<< " not implemented yet !");
	884	} // switch
	885	} // try
[878]	886
[879]	887	catch (CNetCdfException& e)
	888	{
	889	StdString msg("On writing the domain : ");
	890	msg.append(domid); msg.append("\n");
	891	msg.append("In the context : ");
	892	msg.append(context->getId()); msg.append("\n");
	893	msg.append(e.what());
[924]	894	ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg);
[879]	895	}
[878]	896
[879]	897	domain->addRelFile(this->filename);
	898	}
[878]	899
[879]	900	//--------------------------------------------------------------
[878]	901
[879]	902	void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)
[449]	903	{
	904	CContext* context = CContext::getCurrent() ;
	905	CContextServer* server=context->server ;
[488]	906
[449]	907	if (domain->IsWritten(this->filename)) return;
	908	domain->checkAttributes();
[488]	909
	910	if (domain->isEmpty())
[449]	911	if (SuperClass::type==MULTI_FILE) return ;
	912
	913	std::vector<StdString> dim0, dim1;
[772]	914	StdString domid = domain->getDomainOutputName();
[705]	915	if (isWrittenDomain(domid)) return ;
[774]	916	else setWrittenDomain(domid);
[705]	917
[449]	918	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
	919
[1430]	920	StdString lonName,latName, cellName ;
[1391]	921	if (domain->lon_name.isEmpty()) lonName = "lon";
	922	else lonName = domain->lon_name;
	923
	924	if (domain->lat_name.isEmpty()) latName = "lat";
	925	else latName = domain->lat_name;
	926
[1430]	927	if (!domain->dim_i_name.isEmpty()) cellName=domain->dim_i_name;
	928	else cellName="cell";
	929	StdString dimXid = cellName+appendDomid;
[449]	930	StdString dimVertId = StdString("nvertex").append(appendDomid);
[488]	931
[449]	932	string lonid,latid,bounds_lonid,bounds_latid ;
[611]	933	string areaId = "area" + appendDomid;
[449]	934
[1158]	935	nc_type typePrec ;
	936	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	937	else if (domain->prec==4) typePrec = NC_FLOAT ;
	938	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	939
[1132]	940	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
[1025]	941
[1132]	942	CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
	943	int nbWritten = indexToWrite.numElements();
	944	CArray<double,1> writtenLat, writtenLon;
	945	CArray<double,2> writtenBndsLat, writtenBndsLon;
	946	CArray<double,1> writtenArea;
	947
	948	if (domain->hasLonLat)
	949	{
	950	writtenLat.resize(nbWritten);
	951	writtenLon.resize(nbWritten);
	952	for (int idx = 0; idx < nbWritten; ++idx)
	953	{
[1390]	954	if (idx < domain->latvalue.numElements())
	955	{
	956	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
	957	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
	958	}
	959	else
	960	{
	961	writtenLat(idx) = 0.;
	962	writtenLon(idx) = 0.;
	963	}
[1132]	964	}
[1390]	965	}
[1132]	966
[1390]	967	if (domain->hasBounds)
	968	{
	969	int nvertex = domain->nvertex, idx;
	970	writtenBndsLat.resize(nvertex, nbWritten);
	971	writtenBndsLon.resize(nvertex, nbWritten);
	972	CArray<double,2>& boundslat = domain->bounds_latvalue;
	973	CArray<double,2>& boundslon = domain->bounds_lonvalue;
	974	for (idx = 0; idx < nbWritten; ++idx)
	975	{
	976	for (int nv = 0; nv < nvertex; ++nv)
	977	{
	978	if (idx < boundslat.columns())
[1132]	979	{
	980	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
	981	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
	982	}
[1390]	983	else
	984	{
	985	writtenBndsLat(nv, idx) = 0.;
	986	writtenBndsLon(nv, idx) = 0.;
	987	}
	988	}
[1132]	989	}
	990	}
	991
	992	if (domain->hasArea)
	993	{
	994	writtenArea.resize(nbWritten);
	995	for (int idx = 0; idx < nbWritten; ++idx)
	996	{
[1390]	997	if (idx < domain->areavalue.numElements())
	998	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
	999	else
	1000	writtenArea(idx) = 0.;
[1132]	1001	}
	1002	}
	1003
[498]	1004	try
[449]	1005	{
[498]	1006	switch (SuperClass::type)
	1007	{
	1008	case (MULTI_FILE) :
	1009	{
	1010	dim0.push_back(dimXid);
[1553]	1011	SuperClassWriter::addDimension(dimXid, domain->ni);
[488]	1012
[1415]	1013	lonid = lonName+appendDomid;
	1014	latid = latName+appendDomid;
[1430]	1015	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	1016	else bounds_lonid = "bounds_"+lonName+appendDomid;
	1017	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	1018	else bounds_latid = "bounds_"+latName+appendDomid;
	1019
[665]	1020	if (domain->hasLonLat)
	1021	{
[1456]	1022	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	1023	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	1024	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
	1025	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
	1026	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
	1027	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
	1028	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	1029	}
[498]	1030	dim0.clear();
	1031	if (domain->hasBounds)
	1032	{
	1033	dim0.push_back(dimXid);
	1034	dim0.push_back(dimVertId);
[1456]	1035	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	1036	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[498]	1037	}
	1038
	1039	dim0.clear();
[449]	1040	dim0.push_back(dimXid);
[611]	1041	if (domain->hasArea)
	1042	{
[1456]	1043	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	1044	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	1045	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	1046	}
	1047
[498]	1048	SuperClassWriter::definition_end();
[449]	1049
[665]	1050	if (domain->hasLonLat)
[498]	1051	{
[1132]	1052	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
	1053	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
[665]	1054	if (domain->hasBounds)
	1055	{
[1132]	1056	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
	1057	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
[665]	1058	}
[498]	1059	}
[611]	1060
	1061	if (domain->hasArea)
[1132]	1062	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
[611]	1063
[498]	1064	SuperClassWriter::definition_start();
	1065	break ;
	1066	}
[488]	1067
[498]	1068	case (ONE_FILE) :
	1069	{
[1415]	1070	lonid = lonName+appendDomid;
	1071	latid = latName+appendDomid;
[1430]	1072	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	1073	else bounds_lonid = "bounds_"+lonName+appendDomid;
	1074	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	1075	else bounds_latid = "bounds_"+latName+appendDomid;
[1391]	1076
[498]	1077	dim0.push_back(dimXid);
[1132]	1078	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
[665]	1079	if (domain->hasLonLat)
	1080	{
[1456]	1081	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	1082	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	1083
	1084	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
	1085	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
	1086	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
	1087	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
[1025]	1088	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex);
[665]	1089	}
[498]	1090	dim0.clear();
[449]	1091
[498]	1092	if (domain->hasBounds)
	1093	{
	1094	dim0.push_back(dimXid);
	1095	dim0.push_back(dimVertId);
[1456]	1096	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	1097	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[498]	1098	}
[488]	1099
[611]	1100	if (domain->hasArea)
	1101	{
	1102	dim0.clear();
	1103	dim0.push_back(dimXid);
[1456]	1104	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	1105	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	1106	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	1107	}
	1108
[498]	1109	SuperClassWriter::definition_end();
[488]	1110
[498]	1111	std::vector<StdSize> start(1), startBounds(2) ;
	1112	std::vector<StdSize> count(1), countBounds(2) ;
	1113	if (domain->isEmpty())
	1114	{
	1115	start[0]=0 ;
	1116	count[0]=0 ;
	1117	startBounds[1]=0 ;
[1025]	1118	countBounds[1]=nvertex ;
[498]	1119	startBounds[0]=0 ;
	1120	countBounds[0]=0 ;
	1121	}
	1122	else
	1123	{
[1553]	1124	start[0]=domain->ibegin;
	1125	count[0]=domain->ni;
	1126	startBounds[0]=domain->ibegin;
[498]	1127	startBounds[1]=0 ;
[1553]	1128	countBounds[0]=domain->ni;
[1025]	1129	countBounds[1]=nvertex ;
[498]	1130	}
[665]	1131
	1132	if (domain->hasLonLat)
[498]	1133	{
[1132]	1134	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	1135	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	1136	if (domain->hasBounds)
	1137	{
[1132]	1138	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0,&startBounds,&countBounds);
	1139	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0,&startBounds,&countBounds);
[665]	1140	}
[498]	1141	}
[488]	1142
[611]	1143	if (domain->hasArea)
[1132]	1144	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
[488]	1145
[498]	1146	SuperClassWriter::definition_start();
[488]	1147
[498]	1148	break;
	1149	}
	1150	default :
	1151	ERROR("CNc4DataOutput::writeDomain(domain)",
	1152	<< "[ type = " << SuperClass::type << "]"
	1153	<< " not implemented yet !");
	1154	}
[219]	1155	}
[498]	1156	catch (CNetCdfException& e)
	1157	{
	1158	StdString msg("On writing the domain : ");
	1159	msg.append(domid); msg.append("\n");
	1160	msg.append("In the context : ");
	1161	msg.append(context->getId()); msg.append("\n");
	1162	msg.append(e.what());
	1163	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
	1164	}
[219]	1165	domain->addRelFile(this->filename);
	1166	}
	1167	//--------------------------------------------------------------
	1168
[347]	1169	void CNc4DataOutput::writeAxis_(CAxis* axis)
[219]	1170	{
[1030]	1171	if (axis->IsWritten(this->filename)) return;
	1172	axis->checkAttributes();
[488]	1173
[1129]	1174	axis->computeWrittenIndex();
[1249]	1175	axis->computeWrittenCompressedIndex(comm_file);
[1129]	1176
[1559]	1177	int size = (MULTI_FILE == SuperClass::type) ? axis->n.getValue()
	1178	: axis->n_glo.getValue();
[1099]	1179
[1559]	1180	if ((0 == axis->n) && (MULTI_FILE == SuperClass::type)) return;
[1235]	1181
[1030]	1182	std::vector<StdString> dims;
	1183	StdString axisid = axis->getAxisOutputName();
[1435]	1184	StdString axisDim, axisBoundsId;
[1030]	1185	if (isWrittenAxis(axisid)) return ;
	1186	else setWrittenAxis(axisid);
[705]	1187
[1158]	1188	nc_type typePrec ;
	1189	if (axis->prec.isEmpty()) typePrec = NC_FLOAT ;
[1235]	1190	else if (axis->prec==4) typePrec = NC_FLOAT ;
[1158]	1191	else if (axis->prec==8) typePrec = NC_DOUBLE ;
	1192
	1193	if (!axis->label.isEmpty()) typePrec = NC_CHAR ;
	1194	string strId="str_len" ;
[1030]	1195	try
	1196	{
[1433]	1197	if (axis->dim_name.isEmpty()) axisDim = axisid;
	1198	else axisDim=axis->dim_name.getValue();
[1559]	1199	SuperClassWriter::addDimension(axisDim, size);
[1433]	1200	dims.push_back(axisDim);
	1201
[1439]	1202	if (!axis->label.isEmpty() && !SuperClassWriter::dimExist(strId)) SuperClassWriter::addDimension(strId, stringArrayLen);
[1433]	1203
[1435]	1204	if (axis->hasValue \|\| !axis->label.isEmpty())
[816]	1205	{
[1158]	1206	if (!axis->label.isEmpty()) dims.push_back(strId);
[1430]	1207
[1456]	1208	SuperClassWriter::addVariable(axisid, typePrec, dims, compressionLevel);
[219]	1209
[1030]	1210	if (!axis->name.isEmpty())
	1211	SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid);
[219]	1212
[1030]	1213	if (!axis->standard_name.isEmpty())
	1214	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid);
[540]	1215
[1030]	1216	if (!axis->long_name.isEmpty())
	1217	SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid);
[219]	1218
[1030]	1219	if (!axis->unit.isEmpty())
	1220	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid);
[219]	1221
[1430]	1222	if (!axis->axis_type.isEmpty())
	1223	{
	1224	switch(axis->axis_type)
	1225	{
	1226	case CAxis::axis_type_attr::X :
	1227	SuperClassWriter::addAttribute("axis", string("X"), &axisid);
	1228	break;
	1229	case CAxis::axis_type_attr::Y :
	1230	SuperClassWriter::addAttribute("axis", string("Y"), &axisid);
	1231	break;
	1232	case CAxis::axis_type_attr::Z :
	1233	SuperClassWriter::addAttribute("axis", string("Z"), &axisid);
	1234	break;
	1235	case CAxis::axis_type_attr::T :
	1236	SuperClassWriter::addAttribute("axis", string("T"), &axisid);
	1237	break;
	1238	}
	1239	}
	1240
[1030]	1241	if (!axis->positive.isEmpty())
	1242	{
	1243	SuperClassWriter::addAttribute("positive",
	1244	(axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"),
	1245	&axisid);
	1246	}
[399]	1247
[1266]	1248	if (!axis->formula.isEmpty())
	1249	SuperClassWriter::addAttribute("formula", axis->formula.getValue(), &axisid);
	1250
	1251	if (!axis->formula_term.isEmpty())
	1252	SuperClassWriter::addAttribute("formula_term", axis->formula_term.getValue(), &axisid);
	1253
[1435]	1254	axisBoundsId = (axis->bounds_name.isEmpty()) ? axisid + "_bounds" : axis->bounds_name;
[1249]	1255	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
[1030]	1256	{
	1257	dims.push_back("axis_nbounds");
[1456]	1258	SuperClassWriter::addVariable(axisBoundsId, typePrec, dims, compressionLevel);
[1030]	1259	SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid);
[1288]	1260
	1261	if (!axis->standard_name.isEmpty())
	1262	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisBoundsId);
	1263
	1264	if (!axis->unit.isEmpty())
	1265	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisBoundsId);
	1266
[1266]	1267	if (!axis->formula_bounds.isEmpty())
[1288]	1268	SuperClassWriter::addAttribute("formula", axis->formula_bounds.getValue(), &axisBoundsId);
[1266]	1269
	1270	if (!axis->formula_term_bounds.isEmpty())
[1288]	1271	SuperClassWriter::addAttribute("formula_term", axis->formula_term_bounds.getValue(), &axisBoundsId);
[1030]	1272	}
[1435]	1273	}
[816]	1274
[1435]	1275	SuperClassWriter::definition_end();
	1276
	1277	CArray<size_t, 1>& indexToWrite = axis->localIndexToWriteOnServer;
	1278	int nbWritten = indexToWrite.numElements();
	1279	CArray<double,1> axis_value(indexToWrite.numElements());
	1280	if (!axis->value.isEmpty())
	1281	{
[1421]	1282	for (int i = 0; i < nbWritten; i++)
	1283	{
	1284	if (i < axis->value.numElements())
	1285	axis_value(i) = axis->value(indexToWrite(i));
	1286	else
	1287	axis_value(i) = 0.;
	1288	}
[1435]	1289	}
	1290	CArray<double,2> axis_bounds;
	1291	CArray<string,1> axis_label;
	1292	if (!axis->label.isEmpty())
	1293	{
	1294	axis_label.resize(indexToWrite.numElements());
	1295	for (int i = 0; i < nbWritten; i++)
[1235]	1296	{
[1435]	1297	if (i < axis->label.numElements())
	1298	axis_label(i) = axis->label(indexToWrite(i));
	1299	else
	1300	axis_label(i) = boost::lexical_cast<string>(0); // Write 0 as a label
[1235]	1301	}
[1435]	1302	}
[1129]	1303
[1435]	1304	switch (SuperClass::type)
	1305	{
	1306	case MULTI_FILE:
[1030]	1307	{
[1435]	1308	if (axis->label.isEmpty())
[1437]	1309	{
	1310	if (!axis->value.isEmpty())
	1311	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0);
[633]	1312
[1437]	1313	if (!axis->bounds.isEmpty())
	1314	{
[1129]	1315	axis_bounds.resize(2, indexToWrite.numElements());
	1316	for (int i = 0; i < nbWritten; ++i)
	1317	{
[1421]	1318	if (i < axis->bounds.columns())
	1319	{
	1320	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
	1321	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
	1322	}
	1323	else
	1324	{
	1325	axis_bounds(0, i) = 0.;
	1326	axis_bounds(1, i) = 0.;
[1435]	1327
[1421]	1328	}
[1129]	1329	}
[1437]	1330	SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0);
	1331	}
[1435]	1332	}
[1437]	1333	else
[1435]	1334	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0);
	1335
	1336	SuperClassWriter::definition_start();
	1337	break;
	1338	}
	1339	case ONE_FILE:
	1340	{
	1341	std::vector<StdSize> start(1), startBounds(2) ;
	1342	std::vector<StdSize> count(1), countBounds(2) ;
[1559]	1343	start[0] = startBounds[0] = axis->begin;
	1344	count[0] = countBounds[0] = axis->n;
[1435]	1345	startBounds[1] = 0;
	1346	countBounds[1] = 2;
	1347
	1348	if (axis->label.isEmpty())
[1437]	1349	{
	1350	if (!axis->value.isEmpty())
	1351	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count);
[1435]	1352
[1437]	1353	if (!axis->bounds.isEmpty())
[1235]	1354	{
[1437]	1355	axis_bounds.resize(2, indexToWrite.numElements());
	1356	for (int i = 0; i < nbWritten; ++i)
[1435]	1357	{
[1437]	1358	if (i < axis->bounds.columns())
	1359	{
	1360	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
	1361	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
	1362	}
	1363	else
	1364	{
	1365	axis_bounds(0, i) = 0.;
	1366	axis_bounds(1, i) = 0.;
	1367	}
[1435]	1368	}
[1437]	1369	SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds);
[1235]	1370	}
[1435]	1371	}
[1437]	1372	else
[1435]	1373	{
	1374	std::vector<StdSize> startLabel(2), countLabel(2);
	1375	startLabel[0] = start[0]; startLabel[1] = 0;
	1376	countLabel[0] = count[0]; countLabel[1] = stringArrayLen;
	1377	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0, &startLabel, &countLabel);
	1378	}
[609]	1379
[1435]	1380	SuperClassWriter::definition_start();
	1381
	1382	break;
[609]	1383	}
[1435]	1384	default :
	1385	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)",
	1386	<< "[ type = " << SuperClass::type << "]"
	1387	<< " not implemented yet !");
[609]	1388	}
[1030]	1389	}
	1390	catch (CNetCdfException& e)
	1391	{
	1392	StdString msg("On writing the axis : ");
	1393	msg.append(axisid); msg.append("\n");
	1394	msg.append("In the context : ");
	1395	CContext* context = CContext::getCurrent() ;
	1396	msg.append(context->getId()); msg.append("\n");
	1397	msg.append(e.what());
	1398	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg);
	1399	}
[1158]	1400	axis->addRelFile(this->filename);
[391]	1401	}
[488]	1402
[887]	1403	void CNc4DataOutput::writeScalar_(CScalar* scalar)
	1404	{
	1405	if (scalar->IsWritten(this->filename)) return;
	1406	scalar->checkAttributes();
	1407	int scalarSize = 1;
	1408
	1409	StdString scalaId = scalar->getScalarOutputName();
[1430]	1410	StdString boundsId;
[887]	1411	if (isWrittenAxis(scalaId)) return ;
	1412	else setWrittenAxis(scalaId);
	1413
[1158]	1414	nc_type typePrec ;
	1415	if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ;
	1416	else if (scalar->prec==4) typePrec = NC_FLOAT ;
	1417	else if (scalar->prec==8) typePrec = NC_DOUBLE ;
	1418
[1435]	1419	if (!scalar->label.isEmpty()) typePrec = NC_CHAR ;
	1420	string strId="str_len" ;
	1421
[887]	1422	try
	1423	{
[1439]	1424	if (!scalar->label.isEmpty() && !SuperClassWriter::dimExist(strId)) SuperClassWriter::addDimension(strId, stringArrayLen);
[1435]	1425
	1426	if (!scalar->value.isEmpty() \|\| !scalar->label.isEmpty())
[887]	1427	{
[1430]	1428	std::vector<StdString> dims;
	1429	StdString scalarDim = scalaId;
	1430
[1435]	1431	if (!scalar->label.isEmpty()) dims.push_back(strId);
	1432
[1158]	1433	SuperClassWriter::addVariable(scalaId, typePrec, dims);
[887]	1434
	1435	if (!scalar->name.isEmpty())
	1436	SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId);
	1437
	1438	if (!scalar->standard_name.isEmpty())
	1439	SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId);
	1440
	1441	if (!scalar->long_name.isEmpty())
	1442	SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId);
	1443
	1444	if (!scalar->unit.isEmpty())
	1445	SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId);
	1446
[1430]	1447	if (!scalar->axis_type.isEmpty())
	1448	{
	1449	switch(scalar->axis_type)
	1450	{
	1451	case CScalar::axis_type_attr::X :
	1452	SuperClassWriter::addAttribute("axis", string("X"), &scalaId);
	1453	break;
	1454	case CScalar::axis_type_attr::Y :
	1455	SuperClassWriter::addAttribute("axis", string("Y"), &scalaId);
	1456	break;
	1457	case CScalar::axis_type_attr::Z :
	1458	SuperClassWriter::addAttribute("axis", string("Z"), &scalaId);
	1459	break;
	1460	case CScalar::axis_type_attr::T :
	1461	SuperClassWriter::addAttribute("axis", string("T"), &scalaId);
	1462	break;
	1463	}
	1464	}
	1465
[1435]	1466	if (!scalar->positive.isEmpty())
[1430]	1467	{
[1435]	1468	SuperClassWriter::addAttribute("positive",
	1469	(scalar->positive == CScalar::positive_attr::up) ? string("up") : string("down"),
	1470	&scalaId);
	1471	}
	1472
	1473	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1474	{
[1436]	1475	dims.clear();
	1476	dims.push_back("axis_nbounds");
[1435]	1477	boundsId = (scalar->bounds_name.isEmpty()) ? (scalaId + "_bounds") : scalar->bounds_name.getValue();
[1430]	1478	SuperClassWriter::addVariable(boundsId, typePrec, dims);
[1436]	1479	SuperClassWriter::addAttribute("bounds", boundsId, &scalaId);
[1430]	1480	}
	1481
[887]	1482	SuperClassWriter::definition_end();
	1483
	1484	switch (SuperClass::type)
	1485	{
	1486	case MULTI_FILE:
	1487	{
	1488	CArray<double,1> scalarValue(scalarSize);
[1435]	1489	CArray<string,1> scalarLabel(scalarSize);
[1436]	1490	CArray<double,1> scalarBounds(scalarSize*2);
[1435]	1491
	1492	if (!scalar->value.isEmpty() && scalar->label.isEmpty())
[1430]	1493	{
[1435]	1494	scalarValue(0) = scalar->value;
	1495	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0);
	1496	}
	1497
	1498	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1499	{
[1436]	1500	scalarBounds(0) = scalar->bounds(0);
	1501	scalarBounds(1) = scalar->bounds(1);
	1502	SuperClassWriter::writeData(scalarBounds, boundsId, isCollective, 0);
[1430]	1503	}
[1435]	1504
	1505	if (!scalar->label.isEmpty())
	1506	{
	1507	scalarLabel(0) = scalar->label;
	1508	SuperClassWriter::writeData(scalarLabel, scalaId, isCollective, 0);
	1509	}
	1510
[887]	1511	SuperClassWriter::definition_start();
	1512
	1513	break;
	1514	}
	1515	case ONE_FILE:
	1516	{
	1517	CArray<double,1> scalarValue(scalarSize);
[1435]	1518	CArray<string,1> scalarLabel(scalarSize);
[1436]	1519	CArray<double,1> scalarBounds(scalarSize*2);
[887]	1520
	1521	std::vector<StdSize> start(1);
	1522	std::vector<StdSize> count(1);
	1523	start[0] = 0;
	1524	count[0] = 1;
[1435]	1525	if (!scalar->value.isEmpty() && scalar->label.isEmpty())
[1430]	1526	{
[1435]	1527	scalarValue(0) = scalar->value;
	1528	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count);
	1529	}
	1530	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1531	{
[1436]	1532	scalarBounds(0) = scalar->bounds(0);
	1533	scalarBounds(1) = scalar->bounds(1);
	1534	count[0] = 2;
	1535	SuperClassWriter::writeData(scalarBounds, boundsId, isCollective, 0, &start, &count);
[1430]	1536	}
[1435]	1537	if (!scalar->label.isEmpty())
	1538	{
	1539	scalarLabel(0) = scalar->label;
	1540	count[0] = stringArrayLen;
	1541	SuperClassWriter::writeData(scalarLabel, scalaId, isCollective, 0, &start, &count);
	1542	}
	1543
[887]	1544	SuperClassWriter::definition_start();
	1545
	1546	break;
	1547	}
	1548	default :
	1549	ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)",
	1550	<< "[ type = " << SuperClass::type << "]"
	1551	<< " not implemented yet !");
	1552	}
	1553	}
	1554	}
	1555	catch (CNetCdfException& e)
	1556	{
	1557	StdString msg("On writing the scalar : ");
	1558	msg.append(scalaId); msg.append("\n");
	1559	msg.append("In the context : ");
	1560	CContext* context = CContext::getCurrent() ;
	1561	msg.append(context->getId()); msg.append("\n");
	1562	msg.append(e.what());
	1563	ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg);
	1564	}
	1565	scalar->addRelFile(this->filename);
	1566	}
	1567
[676]	1568	//--------------------------------------------------------------
	1569
	1570	void CNc4DataOutput::writeGridCompressed_(CGrid* grid)
	1571	{
	1572	if (grid->isScalarGrid() \|\| grid->isWrittenCompressed(this->filename)) return;
	1573
	1574	try
	1575	{
[887]	1576	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[676]	1577	std::vector<StdString> domainList = grid->getDomainList();
	1578	std::vector<StdString> axisList = grid->getAxisList();
[887]	1579	std::vector<StdString> scalarList = grid->getScalarList();
	1580	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
[676]	1581
	1582	std::vector<StdString> dims;
	1583
	1584	if (grid->isCompressible())
	1585	{
	1586	StdString varId = grid->getId() + "_points";
	1587
	1588	int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes();
	1589	SuperClassWriter::addDimension(varId, nbIndexes);
	1590
	1591	dims.push_back(varId);
	1592	SuperClassWriter::addVariable(varId, NC_INT, dims);
	1593
	1594	StdOStringStream compress;
	1595	for (int i = numElement - 1; i >= 0; --i)
	1596	{
[887]	1597	if (2 == axisDomainOrder(i))
[676]	1598	{
	1599	CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]);
[772]	1600	StdString domId = domain->getDomainOutputName();
[676]	1601	StdString appendDomId = singleDomain ? "" : "_" + domId;
	1602
	1603	switch (domain->type)
	1604	{
	1605	case CDomain::type_attr::curvilinear:
	1606	compress << "y" << appendDomId << " x" << appendDomId;
	1607	break;
	1608	case CDomain::type_attr::rectilinear:
	1609	compress << "lat" << appendDomId << " lon" << appendDomId;
	1610	break;
	1611	case CDomain::type_attr::unstructured:
[1430]	1612	StdString cellName = (!domain->dim_i_name.isEmpty()) ? cellName=domain->dim_i_name : "cell";
	1613	compress << cellName << appendDomId;
	1614	// compress << "cell" << appendDomId;
[676]	1615	break;
	1616	}
	1617	++idxDomain;
	1618	}
[887]	1619	else if (1 == axisDomainOrder(i))
[676]	1620	{
	1621	CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]);
[772]	1622	compress << axis->getAxisOutputName();
[676]	1623	++idxAxis;
	1624	}
[887]	1625	else
	1626	{
	1627	CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]);
	1628	compress << scalar->getScalarOutputName();
	1629	++idxScalar;
	1630	}
[676]	1631
	1632	if (i != 0) compress << ' ';
	1633	}
[1144]	1634	SuperClassWriter::addAttribute("compress", compress.str(), &varId);
[676]	1635
	1636	CArray<int, 1> indexes(grid->getNumberWrittenIndexes());
[1143]	1637	indexes = grid->localIndexToWriteOnServer;
[676]	1638
	1639	switch (SuperClass::type)
	1640	{
	1641	case (MULTI_FILE):
	1642	{
	1643	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
	1644	break;
	1645	}
	1646	case (ONE_FILE):
	1647	{
	1648	if (grid->doGridHaveDataDistributed())
	1649	grid->getDistributionServer()->computeGlobalIndex(indexes);
	1650
	1651	std::vector<StdSize> start, count;
	1652	start.push_back(grid->getOffsetWrittenIndexes());
	1653	count.push_back(grid->getNumberWrittenIndexes());
	1654
	1655	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
	1656	break;
	1657	}
	1658	}
	1659	}
	1660	else
	1661	{
	1662	for (int i = 0; i < numElement; ++i)
	1663	{
	1664	StdString varId, compress;
	1665	CArray<int, 1> indexes;
	1666	bool isDistributed;
	1667	StdSize nbIndexes, totalNbIndexes, offset;
	1668	int firstGlobalIndex;
	1669
[887]	1670	if (2 == axisDomainOrder(i))
[676]	1671	{
	1672	CDomain* domain = CDomain::get(domainList[idxDomain]);
[774]	1673	StdString domId = domain->getDomainOutputName();
	1674
[676]	1675	if (!domain->isCompressible()
	1676	\|\| domain->type == CDomain::type_attr::unstructured
[774]	1677	\|\| domain->isWrittenCompressed(this->filename)
	1678	\|\| isWrittenCompressedDomain(domId))
[676]	1679	continue;
	1680
	1681	StdString appendDomId = singleDomain ? "" : "_" + domId;
	1682
	1683	varId = domId + "_points";
	1684	switch (domain->type)
	1685	{
	1686	case CDomain::type_attr::curvilinear:
	1687	compress = "y" + appendDomId + " x" + appendDomId;
	1688	break;
	1689	case CDomain::type_attr::rectilinear:
	1690	compress = "lat" + appendDomId + " lon" + appendDomId;
	1691	break;
	1692	}
	1693
[1249]	1694	// indexes.resize(domain->compressedIndexToWriteOnServer[comm_file].numElements());
	1695	// indexes = domain->compressedIndexToWriteOnServer[com_file];
	1696	indexes.resize(domain->getCompressedIndexToWriteOnServer(comm_file).numElements());
	1697	indexes = domain->getCompressedIndexToWriteOnServer(comm_file);
[1143]	1698
[676]	1699	isDistributed = domain->isDistributed();
[1249]	1700	nbIndexes = domain->getNumberWrittenIndexes(comm_file);
	1701	totalNbIndexes = domain->getTotalNumberWrittenIndexes(comm_file);
	1702	offset = domain->getOffsetWrittenIndexes(comm_file);
[676]	1703	firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo;
	1704
	1705	domain->addRelFileCompressed(this->filename);
[774]	1706	setWrittenCompressedDomain(domId);
[676]	1707	++idxDomain;
	1708	}
[887]	1709	else if (1 == axisDomainOrder(i))
[676]	1710	{
	1711	CAxis* axis = CAxis::get(axisList[idxAxis]);
[774]	1712	StdString axisId = axis->getAxisOutputName();
	1713
	1714	if (!axis->isCompressible()
	1715	\|\| axis->isWrittenCompressed(this->filename)
	1716	\|\| isWrittenCompressedAxis(axisId))
[676]	1717	continue;
	1718
	1719	varId = axisId + "_points";
	1720	compress = axisId;
	1721
[1249]	1722	// indexes.resize(axis->compressedIndexToWriteOnServer.numElements());
	1723	// indexes = axis->compressedIndexToWriteOnServer;
[1143]	1724
[1249]	1725	indexes.resize(axis->getCompressedIndexToWriteOnServer(comm_file).numElements());
	1726	indexes = axis->getCompressedIndexToWriteOnServer(comm_file);
	1727
[676]	1728	isDistributed = axis->isDistributed();
[1249]	1729	nbIndexes = axis->getNumberWrittenIndexes(comm_file);
	1730	totalNbIndexes = axis->getTotalNumberWrittenIndexes(comm_file);
	1731	offset = axis->getOffsetWrittenIndexes(comm_file);
[676]	1732	firstGlobalIndex = axis->begin;
	1733
	1734	axis->addRelFileCompressed(this->filename);
[774]	1735	setWrittenCompressedAxis(axisId);
[676]	1736	++idxAxis;
	1737	}
[887]	1738	else
	1739	{
	1740	}
[676]	1741
	1742	if (!varId.empty())
	1743	{
	1744	SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes);
	1745
	1746	dims.clear();
	1747	dims.push_back(varId);
	1748	SuperClassWriter::addVariable(varId, NC_INT, dims);
	1749
	1750	SuperClassWriter::addAttribute("compress", compress, &varId);
	1751
	1752	switch (SuperClass::type)
	1753	{
	1754	case (MULTI_FILE):
	1755	{
	1756	indexes -= firstGlobalIndex;
	1757	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
	1758	break;
	1759	}
	1760	case (ONE_FILE):
	1761	{
	1762	std::vector<StdSize> start, count;
	1763	start.push_back(offset);
	1764	count.push_back(nbIndexes);
	1765
	1766	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
	1767	break;
	1768	}
	1769	}
	1770	}
[1144]	1771	}
[676]	1772	}
	1773
	1774	grid->addRelFileCompressed(this->filename);
	1775	}
	1776	catch (CNetCdfException& e)
	1777	{
	1778	StdString msg("On writing compressed grid : ");
	1779	msg.append(grid->getId()); msg.append("\n");
	1780	msg.append("In the context : ");
	1781	CContext* context = CContext::getCurrent();
	1782	msg.append(context->getId()); msg.append("\n");
	1783	msg.append(e.what());
	1784	ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg);
	1785	}
	1786	}
	1787
	1788	//--------------------------------------------------------------
	1789
[391]	1790	void CNc4DataOutput::writeTimeDimension_(void)
	1791	{
[498]	1792	try
	1793	{
[802]	1794	SuperClassWriter::addDimension(getTimeCounterName());
[498]	1795	}
	1796	catch (CNetCdfException& e)
	1797	{
[614]	1798	StdString msg("On writing time dimension : time_couter\n");
[498]	1799	msg.append("In the context : ");
	1800	CContext* context = CContext::getCurrent() ;
	1801	msg.append(context->getId()); msg.append("\n");
	1802	msg.append(e.what());
	1803	ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg);
	1804	}
[391]	1805	}
[676]	1806
[219]	1807	//--------------------------------------------------------------
	1808
[347]	1809	void CNc4DataOutput::writeField_(CField* field)
[219]	1810	{
[1158]	1811	CContext* context = CContext::getCurrent() ;
	1812	CContextServer* server=context->server ;
[300]	1813
[1158]	1814	std::vector<StdString> dims, coodinates;
	1815	CGrid* grid = field->grid;
	1816	if (!grid->doGridHaveDataToWrite())
[567]	1817	if (SuperClass::type==MULTI_FILE) return ;
[488]	1818
[1158]	1819	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
	1820	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
	1821	std::vector<StdString> domainList = grid->getDomainList();
	1822	std::vector<StdString> axisList = grid->getAxisList();
	1823	std::vector<StdString> scalarList = grid->getScalarList();
[219]	1824
[1158]	1825	StdString timeid = getTimeCounterName();
	1826	StdString dimXid,dimYid;
	1827	std::deque<StdString> dimIdList, dimCoordList;
	1828	bool hasArea = false;
	1829	StdString cellMeasures = "area:";
	1830	bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output;
[488]	1831
[1158]	1832	for (int i = 0; i < numElement; ++i)
	1833	{
	1834	if (2 == axisDomainOrder(i))
	1835	{
	1836	CDomain* domain = CDomain::get(domainList[idxDomain]);
	1837	StdString domId = domain->getDomainOutputName();
	1838	StdString appendDomId = singleDomain ? "" : "_" + domId ;
[1391]	1839	StdString lonName,latName ;
[1430]	1840	StdString dimIname,dimJname ;
[676]	1841
[1415]	1842	if (domain->lon_name.isEmpty())
	1843	{
	1844	if (domain->type==CDomain::type_attr::curvilinear) lonName = "nav_lon";
	1845	else lonName = "lon";
	1846	}
[1391]	1847	else lonName = domain->lon_name;
	1848
[1415]	1849	if (domain->lat_name.isEmpty())
	1850	{
	1851	if (domain->type==CDomain::type_attr::curvilinear) latName = "nav_lat";
	1852	else latName = "lat";
	1853	}
[1391]	1854	else latName = domain->lat_name;
[1430]	1855
	1856	if (domain->dim_i_name.isEmpty())
	1857	{
	1858	if (domain->type==CDomain::type_attr::curvilinear) dimIname = "x";
	1859	else if (domain->type==CDomain::type_attr::unstructured) dimIname = "cell";
	1860	else dimIname = lonName;
	1861	}
	1862	else dimIname = domain->dim_i_name;
	1863
	1864	if (domain->dim_j_name.isEmpty())
	1865	{
	1866	if (domain->type==CDomain::type_attr::curvilinear) dimJname = "y";
	1867	else dimJname = latName;
	1868	}
	1869	else dimJname = domain->dim_j_name;
[1391]	1870
[1158]	1871	if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured)
	1872	{
	1873	dimIdList.push_back(domId + "_points");
	1874	field->setUseCompressedOutput();
	1875	}
[676]	1876
[1158]	1877	switch (domain->type)
[879]	1878	{
[1158]	1879	case CDomain::type_attr::curvilinear:
	1880	if (!compressedOutput \|\| !domain->isCompressible())
	1881	{
[1430]	1882	dimXid=dimIname+appendDomId;
	1883	dimYid=dimJname+appendDomId;
[1158]	1884	dimIdList.push_back(dimXid);
	1885	dimIdList.push_back(dimYid);
	1886	}
[1415]	1887	dimCoordList.push_back(lonName+appendDomId);
	1888	dimCoordList.push_back(latName+appendDomId);
[1158]	1889	break ;
	1890	case CDomain::type_attr::rectilinear:
	1891	if (!compressedOutput \|\| !domain->isCompressible())
	1892	{
[1430]	1893	dimXid = dimIname+appendDomId;
	1894	dimYid = dimJname+appendDomId;
[1158]	1895	dimIdList.push_back(dimXid);
	1896	dimIdList.push_back(dimYid);
	1897	}
[1430]	1898	if (lonName != dimIname) dimCoordList.push_back(lonName+appendDomId);
	1899	if (latName != dimJname) dimCoordList.push_back(latName+appendDomId);
	1900
[1158]	1901	break ;
	1902	case CDomain::type_attr::unstructured:
	1903	{
	1904	if (SuperClassWriter::useCFConvention)
	1905	{
[1430]	1906	dimXid = dimIname + appendDomId;
[1158]	1907	dimIdList.push_back(dimXid);
[1415]	1908	dimCoordList.push_back(lonName+appendDomId);
	1909	dimCoordList.push_back(latName+appendDomId);
[1158]	1910	}
	1911	else
	1912	{
	1913	StdString domainName = domain->name;
	1914	if (domain->nvertex == 1)
	1915	{
	1916	dimXid = "n" + domainName + "_node";
	1917	dimIdList.push_back(dimXid);
	1918	dimCoordList.push_back(StdString(domainName + "_node_x"));
	1919	dimCoordList.push_back(StdString(domainName + "_node_y"));
	1920	}
	1921	else if (domain->nvertex == 2)
	1922	{
	1923	dimXid = "n" + domainName + "_edge";
	1924	dimIdList.push_back(dimXid);
	1925	dimCoordList.push_back(StdString(domainName + "_edge_x"));
	1926	dimCoordList.push_back(StdString(domainName + "_edge_y"));
	1927	}
	1928	else
	1929	{
	1930	dimXid = "n" + domainName + "_face";
	1931	dimIdList.push_back(dimXid);
	1932	dimCoordList.push_back(StdString(domainName + "_face_x"));
	1933	dimCoordList.push_back(StdString(domainName + "_face_y"));
	1934	}
	1935	} // ugrid convention
	1936	} // case unstructured domain
[879]	1937	}
[1158]	1938
	1939	if (domain->hasArea)
[879]	1940	{
[1158]	1941	hasArea = true;
	1942	cellMeasures += " area" + appendDomId;
[879]	1943	}
[1158]	1944	++idxDomain;
	1945	}
	1946	else if (1 == axisDomainOrder(i))
	1947	{
	1948	CAxis* axis = CAxis::get(axisList[idxAxis]);
	1949	StdString axisId = axis->getAxisOutputName();
[1430]	1950	StdString axisDim;
[1158]	1951
[1430]	1952	if (axis->dim_name.isEmpty()) axisDim = axisId;
	1953	else axisDim=axis->dim_name.getValue();
	1954
[1158]	1955	if (compressedOutput && axis->isCompressible())
[879]	1956	{
[1430]	1957	dimIdList.push_back(axisDim + "_points");
[1158]	1958	field->setUseCompressedOutput();
[879]	1959	}
[1158]	1960	else
[1430]	1961	dimIdList.push_back(axisDim);
[878]	1962
[1430]	1963	if (axisDim != axisId) dimCoordList.push_back(axisId);
[1158]	1964	++idxAxis;
	1965	}
[1430]	1966	else
[1158]	1967	{
[1430]	1968	CScalar* scalar = CScalar::get(scalarList[idxScalar]);
	1969	StdString scalarId = scalar->getScalarOutputName();
[1446]	1970	if (!scalar->value.isEmpty() \|\| !scalar->label.isEmpty())
	1971	dimCoordList.push_back(scalarId);
[1430]	1972	++idxScalar;
[1158]	1973	}
	1974	}
[488]	1975
[1158]	1976	StdString fieldid = field->getFieldOutputName();
[219]	1977
[1158]	1978	nc_type type ;
	1979	if (field->prec.isEmpty()) type = NC_FLOAT ;
	1980	else
	1981	{
	1982	if (field->prec==2) type = NC_SHORT ;
	1983	else if (field->prec==4) type = NC_FLOAT ;
	1984	else if (field->prec==8) type = NC_DOUBLE ;
	1985	}
[488]	1986
[1158]	1987	bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once);
[488]	1988
[1158]	1989	if (wtime)
	1990	{
	1991	if (field->hasTimeInstant && hasTimeInstant) coodinates.push_back(string("time_instant"));
	1992	else if (field->hasTimeCentered && hasTimeCentered) coodinates.push_back(string("time_centered"));
	1993	dims.push_back(timeid);
	1994	}
[488]	1995
[1158]	1996	if (compressedOutput && grid->isCompressible())
	1997	{
	1998	dims.push_back(grid->getId() + "_points");
	1999	field->setUseCompressedOutput();
	2000	}
	2001	else
	2002	{
	2003	while (!dimIdList.empty())
	2004	{
	2005	dims.push_back(dimIdList.back());
	2006	dimIdList.pop_back();
	2007	}
	2008	}
[219]	2009
[1158]	2010	while (!dimCoordList.empty())
	2011	{
	2012	coodinates.push_back(dimCoordList.back());
	2013	dimCoordList.pop_back();
	2014	}
[219]	2015
[1158]	2016	try
	2017	{
[498]	2018	SuperClassWriter::addVariable(fieldid, type, dims);
[488]	2019
[498]	2020	if (!field->standard_name.isEmpty())
	2021	SuperClassWriter::addAttribute
	2022	("standard_name", field->standard_name.getValue(), &fieldid);
[219]	2023
[498]	2024	if (!field->long_name.isEmpty())
	2025	SuperClassWriter::addAttribute
	2026	("long_name", field->long_name.getValue(), &fieldid);
[219]	2027
[498]	2028	if (!field->unit.isEmpty())
	2029	SuperClassWriter::addAttribute
	2030	("units", field->unit.getValue(), &fieldid);
[463]	2031
[1158]	2032	// Ugrid field attributes "mesh" and "location"
	2033	if (!SuperClassWriter::useCFConvention)
	2034	{
	2035	if (!domainList.empty())
	2036	{
	2037	CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain
	2038	StdString mesh = domain->name;
	2039	SuperClassWriter::addAttribute("mesh", mesh, &fieldid);
	2040	StdString location;
	2041	if (domain->nvertex == 1)
	2042	location = "node";
	2043	else if (domain->nvertex == 2)
	2044	location = "edge";
	2045	else if (domain->nvertex > 2)
	2046	location = "face";
	2047	SuperClassWriter::addAttribute("location", location, &fieldid);
	2048	}
	2049
	2050	}
	2051
	2052	if (!field->valid_min.isEmpty())
[498]	2053	SuperClassWriter::addAttribute
	2054	("valid_min", field->valid_min.getValue(), &fieldid);
[463]	2055
[498]	2056	if (!field->valid_max.isEmpty())
	2057	SuperClassWriter::addAttribute
	2058	("valid_max", field->valid_max.getValue(), &fieldid);
[464]	2059
[498]	2060	if (!field->scale_factor.isEmpty())
	2061	SuperClassWriter::addAttribute
	2062	("scale_factor", field->scale_factor.getValue(), &fieldid);
[464]	2063
[498]	2064	if (!field->add_offset.isEmpty())
	2065	SuperClassWriter::addAttribute
	2066	("add_offset", field->add_offset.getValue(), &fieldid);
[488]	2067
[498]	2068	SuperClassWriter::addAttribute
	2069	("online_operation", field->operation.getValue(), &fieldid);
[472]	2070
[498]	2071	// write child variables as attributes
[488]	2072
	2073
[1021]	2074	bool alreadyAddCellMethod = false;
	2075	StdString cellMethodsPrefix(""), cellMethodsSuffix("");
	2076	if (!field->cell_methods.isEmpty())
	2077	{
[1158]	2078	StdString cellMethodString = field->cell_methods;
	2079	if (field->cell_methods_mode.isEmpty() \|\|
[1021]	2080	(CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode))
[1158]	2081	{
	2082	SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid);
	2083	alreadyAddCellMethod = true;
	2084	}
	2085	else
	2086	{
	2087	switch (field->cell_methods_mode)
	2088	{
	2089	case (CField::cell_methods_mode_attr::prefix):
	2090	cellMethodsPrefix = cellMethodString;
	2091	cellMethodsPrefix += " ";
	2092	break;
	2093	case (CField::cell_methods_mode_attr::suffix):
	2094	cellMethodsSuffix = " ";
	2095	cellMethodsSuffix += cellMethodString;
	2096	break;
	2097	case (CField::cell_methods_mode_attr::none):
	2098	break;
	2099	default:
	2100	break;
	2101	}
	2102	}
[1021]	2103	}
[488]	2104
[1021]	2105
[498]	2106	if (wtime)
	2107	{
[614]	2108	CDuration freqOp = field->freq_op.getValue();
	2109	freqOp.solveTimeStep(*context->calendar);
	2110	StdString freqOpStr = freqOp.toStringUDUnits();
[612]	2111	SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid);
[437]	2112
[614]	2113	CDuration freqOut = field->getRelFile()->output_freq.getValue();
	2114	freqOut.solveTimeStep(*context->calendar);
	2115	SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid);
[612]	2116
[1021]	2117	StdString cellMethods(cellMethodsPrefix + "time: ");
[612]	2118	if (field->operation.getValue() == "instant") cellMethods += "point";
	2119	else if (field->operation.getValue() == "average") cellMethods += "mean";
	2120	else if (field->operation.getValue() == "accumulate") cellMethods += "sum";
	2121	else cellMethods += field->operation;
[614]	2122	if (freqOp.resolve(context->calendar) != freqOut.resolve(context->calendar))
	2123	cellMethods += " (interval: " + freqOpStr + ")";
[1021]	2124	cellMethods += cellMethodsSuffix;
	2125	if (!alreadyAddCellMethod)
	2126	SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid);
[498]	2127	}
[488]	2128
[611]	2129	if (hasArea)
	2130	SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid);
	2131
[498]	2132	if (!field->default_value.isEmpty())
	2133	{
[1424]	2134	double default_value = field->default_value.getValue();
	2135	if (type == NC_DOUBLE)
	2136	{
	2137	SuperClassWriter::setDefaultValue(fieldid, &default_value);
	2138	}
	2139	else if (type == NC_SHORT)
	2140	{
	2141	short sdefault_value = (short)default_value;
	2142	SuperClassWriter::setDefaultValue(fieldid, &sdefault_value);
	2143	}
	2144	else
	2145	{
	2146	float fdefault_value = (float)default_value;
	2147	SuperClassWriter::setDefaultValue(fieldid, &fdefault_value);
	2148	}
[498]	2149	}
	2150	else
[517]	2151	SuperClassWriter::setDefaultValue(fieldid, (double*)NULL);
[219]	2152
[606]	2153	if (field->compression_level.isEmpty())
	2154	field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level;
	2155	SuperClassWriter::setCompressionLevel(fieldid, field->compression_level);
	2156
[878]	2157	{ // Ecriture des coordonnes
[488]	2158
[498]	2159	StdString coordstr; //boost::algorithm::join(coodinates, " ")
	2160	std::vector<StdString>::iterator
	2161	itc = coodinates.begin(), endc = coodinates.end();
[488]	2162
[498]	2163	for (; itc!= endc; itc++)
	2164	{
	2165	StdString & coord = *itc;
	2166	if (itc+1 != endc)
	2167	coordstr.append(coord).append(" ");
	2168	else coordstr.append(coord);
	2169	}
[219]	2170
[498]	2171	SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid);
[219]	2172
[498]	2173	}
[1222]	2174
	2175	vector<CVariable*> listVars = field->getAllVariables() ;
	2176	for (vector<CVariable>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(it, fieldid) ;
	2177
[219]	2178	}
[498]	2179	catch (CNetCdfException& e)
	2180	{
	2181	StdString msg("On writing field : ");
	2182	msg.append(fieldid); msg.append("\n");
	2183	msg.append("In the context : ");
	2184	msg.append(context->getId()); msg.append("\n");
	2185	msg.append(e.what());
	2186	ERROR("CNc4DataOutput::writeField_(CField* field)", << msg);
	2187	}
[879]	2188	} // writeField_()
[219]	2189
	2190	//--------------------------------------------------------------
	2191
[347]	2192	void CNc4DataOutput::writeFile_ (CFile* file)
[219]	2193	{
[773]	2194	StdString filename = file->getFileOutputName();
[219]	2195	StdString description = (!file->description.isEmpty())
	2196	? file->description.getValue()
[335]	2197	: StdString("Created by xios");
[609]	2198
	2199	singleDomain = (file->nbDomains == 1);
	2200
[1158]	2201	StdString conv_str ;
	2202	if (file->convention_str.isEmpty())
	2203	{
	2204	if (SuperClassWriter::useCFConvention) conv_str="CF-1.6" ;
	2205	else conv_str="UGRID" ;
	2206	}
	2207	else conv_str=file->convention_str ;
	2208
[498]	2209	try
	2210	{
[1309]	2211	if (!appendMode) this->writeFileAttributes(filename, description,
	2212	conv_str,
	2213	StdString("An IPSL model"),
	2214	this->getTimeStamp());
[609]	2215
[701]	2216	if (!appendMode)
	2217	SuperClassWriter::addDimension("axis_nbounds", 2);
[498]	2218	}
	2219	catch (CNetCdfException& e)
	2220	{
	2221	StdString msg("On writing file : ");
	2222	msg.append(filename); msg.append("\n");
	2223	msg.append("In the context : ");
	2224	CContext* context = CContext::getCurrent() ;
	2225	msg.append(context->getId()); msg.append("\n");
	2226	msg.append(e.what());
	2227	ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg);
	2228	}
[219]	2229	}
[488]	2230
[472]	2231	void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)
	2232	{
[773]	2233	StdString name = var->getVariableOutputName();
[488]	2234
[498]	2235	try
	2236	{
[527]	2237	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
	2238	addAttribute(name, var->getData<int>(), &fieldId);
	2239	else if (var->type.getValue() == CVariable::type_attr::t_int16)
	2240	addAttribute(name, var->getData<short int>(), &fieldId);
	2241	else if (var->type.getValue() == CVariable::type_attr::t_float)
	2242	addAttribute(name, var->getData<float>(), &fieldId);
	2243	else if (var->type.getValue() == CVariable::type_attr::t_double)
	2244	addAttribute(name, var->getData<double>(), &fieldId);
	2245	else if (var->type.getValue() == CVariable::type_attr::t_string)
	2246	addAttribute(name, var->getData<string>(), &fieldId);
	2247	else
	2248	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)",
	2249	<< "Unsupported variable of type " << var->type.getStringValue());
[498]	2250	}
	2251	catch (CNetCdfException& e)
	2252	{
	2253	StdString msg("On writing attributes of variable with name : ");
	2254	msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n");
	2255	msg.append("In the context : ");
	2256	CContext* context = CContext::getCurrent() ;
	2257	msg.append(context->getId()); msg.append("\n");
	2258	msg.append(e.what());
	2259	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg);
	2260	}
[472]	2261	}
[488]	2262
[472]	2263	void CNc4DataOutput::writeAttribute_ (CVariable* var)
	2264	{
[773]	2265	StdString name = var->getVariableOutputName();
	2266
[498]	2267	try
	2268	{
[527]	2269	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
	2270	addAttribute(name, var->getData<int>());
	2271	else if (var->type.getValue() == CVariable::type_attr::t_int16)
	2272	addAttribute(name, var->getData<short int>());
	2273	else if (var->type.getValue() == CVariable::type_attr::t_float)
	2274	addAttribute(name, var->getData<float>());
	2275	else if (var->type.getValue() == CVariable::type_attr::t_double)
	2276	addAttribute(name, var->getData<double>());
	2277	else if (var->type.getValue() == CVariable::type_attr::t_string)
	2278	addAttribute(name, var->getData<string>());
	2279	else
	2280	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)",
	2281	<< "Unsupported variable of type " << var->type.getStringValue());
[498]	2282	}
	2283	catch (CNetCdfException& e)
	2284	{
	2285	StdString msg("On writing attributes of variable with name : ");
	2286	msg.append(name); msg.append("\n");
	2287	msg.append("In the context : ");
	2288	CContext* context = CContext::getCurrent() ;
	2289	msg.append(context->getId()); msg.append("\n");
	2290	msg.append(e.what());
	2291	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg);
	2292	}
[488]	2293	}
	2294
[321]	2295	void CNc4DataOutput::syncFile_ (void)
	2296	{
[498]	2297	try
	2298	{
	2299	SuperClassWriter::sync() ;
	2300	}
	2301	catch (CNetCdfException& e)
	2302	{
	2303	StdString msg("On synchronizing the write among processes");
	2304	msg.append("In the context : ");
	2305	CContext* context = CContext::getCurrent() ;
	2306	msg.append(context->getId()); msg.append("\n");
	2307	msg.append(e.what());
	2308	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
	2309	}
[321]	2310	}
[219]	2311
[286]	2312	void CNc4DataOutput::closeFile_ (void)
	2313	{
[498]	2314	try
	2315	{
	2316	SuperClassWriter::close() ;
	2317	}
	2318	catch (CNetCdfException& e)
	2319	{
	2320	StdString msg("On closing file");
	2321	msg.append("In the context : ");
	2322	CContext* context = CContext::getCurrent() ;
	2323	msg.append(context->getId()); msg.append("\n");
	2324	msg.append(e.what());
	2325	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
	2326	}
	2327
[286]	2328	}
	2329
[219]	2330	//---------------------------------------------------------------
	2331
	2332	StdString CNc4DataOutput::getTimeStamp(void) const
	2333	{
	2334	const int buffer_size = 100;
	2335	time_t rawtime;
	2336	struct tm * timeinfo = NULL;
	2337	char buffer [buffer_size];
[1158]	2338	StdString formatStr;
	2339	if (file->time_stamp_format.isEmpty()) formatStr="%Y-%b-%d %H:%M:%S %Z" ;
	2340	else formatStr=file->time_stamp_format;
[219]	2341
[1158]	2342	// time ( &rawtime );
	2343	// timeinfo = localtime ( &rawtime );
[219]	2344	time ( &rawtime );
[1158]	2345	timeinfo = gmtime ( &rawtime );
	2346	strftime (buffer, buffer_size, formatStr.c_str(), timeinfo);
[219]	2347
	2348	return (StdString(buffer));
	2349	}
[488]	2350
[219]	2351	//---------------------------------------------------------------
[488]	2352
[347]	2353	void CNc4DataOutput::writeFieldData_ (CField* field)
[219]	2354	{
[707]	2355	CContext* context = CContext::getCurrent();
	2356	CContextServer* server = context->server;
	2357	CGrid* grid = field->grid;
[300]	2358
[1158]	2359	if (field->getNStep()<1)
	2360	{
	2361	return;
	2362	}
[952]	2363
[707]	2364	if (!grid->doGridHaveDataToWrite())
[1158]	2365	if (SuperClass::type == MULTI_FILE \|\| !isCollective)
	2366	{
	2367	return;
	2368	}
[488]	2369
[770]	2370	StdString fieldid = field->getFieldOutputName();
[286]	2371
[707]	2372	StdOStringStream oss;
	2373	string timeAxisId;
[1158]	2374	if (field->hasTimeInstant) timeAxisId = "time_instant";
	2375	else if (field->hasTimeCentered) timeAxisId = "time_centered";
[488]	2376
[802]	2377	StdString timeBoundId = getTimeCounterName() + "_bounds";
[449]	2378
[707]	2379	StdString timeAxisBoundId;
[1158]	2380	if (field->hasTimeInstant) timeAxisBoundId = "time_instant_bounds";
	2381	else if (field->hasTimeCentered) timeAxisBoundId = "time_centered_bounds";
[488]	2382
[707]	2383	if (!field->wasWritten())
	2384	{
[1158]	2385	if (appendMode && field->file->record_offset.isEmpty() &&
	2386	field->getOperationTimeType() != func::CFunctor::once)
[707]	2387	{
[1158]	2388	double factorUnit;
	2389	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
	2390	factorUnit=context->getCalendar()->getDayLengthInSeconds() ;
	2391	else factorUnit=1 ;
	2392	field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1);
[707]	2393	}
[488]	2394
[707]	2395	field->setWritten();
	2396	}
[488]	2397
	2398
[707]	2399	CArray<double,1> time_data(1);
	2400	CArray<double,1> time_data_bound(2);
	2401	CArray<double,1> time_counter(1);
	2402	CArray<double,1> time_counter_bound(2);
	2403
	2404	bool wtime = (field->getOperationTimeType() != func::CFunctor::once);
[1158]	2405	bool wtimeCounter =false ;
	2406	bool wtimeData =false ;
	2407
[707]	2408
[444]	2409	if (wtime)
	2410	{
[692]	2411	Time lastWrite = field->last_Write_srv;
	2412	Time lastLastWrite = field->lastlast_Write_srv;
	2413
[1158]	2414
	2415	if (field->hasTimeInstant)
	2416	{
	2417	time_data(0) = time_data_bound(1) = lastWrite;
[692]	2418	time_data_bound(0) = time_data_bound(1) = lastWrite;
[1158]	2419	if (timeCounterType==instant)
	2420	{
	2421	time_counter(0) = time_data(0);
	2422	time_counter_bound(0) = time_data_bound(0);
	2423	time_counter_bound(1) = time_data_bound(1);
	2424	wtimeCounter=true ;
	2425	}
	2426	if (hasTimeInstant) wtimeData=true ;
	2427	}
	2428	else if (field->hasTimeCentered)
[488]	2429	{
[1158]	2430	time_data(0) = (lastWrite + lastLastWrite) / 2;
[692]	2431	time_data_bound(0) = lastLastWrite;
	2432	time_data_bound(1) = lastWrite;
[1158]	2433	if (timeCounterType==centered)
	2434	{
	2435	time_counter(0) = time_data(0) ;
	2436	time_counter_bound(0) = time_data_bound(0) ;
	2437	time_counter_bound(1) = time_data_bound(1) ;
	2438	wtimeCounter=true ;
	2439	}
	2440	if (hasTimeCentered) wtimeData=true ;
[488]	2441	}
	2442
[1158]	2443	if (timeCounterType==record)
	2444	{
[692]	2445	time_counter(0) = field->getNStep() - 1;
[1158]	2446	time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1;
	2447	wtimeCounter=true ;
	2448	}
[692]	2449
[1158]	2450	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
[692]	2451	{
[1158]	2452	double secByDay=context->getCalendar()->getDayLengthInSeconds() ;
	2453	time_data/=secByDay;
	2454	time_data_bound/=secByDay;
	2455	time_counter/=secByDay;
	2456	time_counter_bound/=secByDay;
[692]	2457	}
	2458	}
	2459
[707]	2460	bool isRoot = (server->intraCommRank == 0);
[488]	2461
[464]	2462	if (!field->scale_factor.isEmpty() \|\| !field->add_offset.isEmpty())
	2463	{
[707]	2464	double scaleFactor = 1.0;
	2465	double addOffset = 0.0;
	2466	if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor;
	2467	if (!field->add_offset.isEmpty()) addOffset = field->add_offset;
	2468	field->scaleFactorAddOffset(scaleFactor, addOffset);
[464]	2469	}
[488]	2470
[498]	2471	try
[219]	2472	{
[676]	2473	size_t writtenSize;
	2474	if (field->getUseCompressedOutput())
	2475	writtenSize = grid->getNumberWrittenIndexes();
	2476	else
	2477	writtenSize = grid->getWrittenDataSize();
	2478
	2479	CArray<double,1> fieldData(writtenSize);
[567]	2480	if (!field->default_value.isEmpty()) fieldData = field->default_value;
[676]	2481
	2482	if (field->getUseCompressedOutput())
	2483	field->outputCompressedField(fieldData);
	2484	else
	2485	field->outputField(fieldData);
	2486
[707]	2487	if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData);
[567]	2488
	2489	switch (SuperClass::type)
[498]	2490	{
[567]	2491	case (MULTI_FILE) :
	2492	{
[1158]	2493	CTimer::get("Files : writing data").resume();
[692]	2494	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1);
[1158]	2495	CTimer::get("Files : writing data").suspend();
[567]	2496	if (wtime)
	2497	{
[1158]	2498	CTimer::get("Files : writing time axis").resume();
	2499	if ( wtimeData)
[692]	2500	{
[1158]	2501	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
	2502	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
	2503	}
	2504	if (wtimeCounter)
	2505	{
	2506	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
	2507	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
[692]	2508	}
[1158]	2509	CTimer::get("Files : writing time axis").suspend();
[567]	2510	}
[707]	2511	break;
[567]	2512	}
	2513	case (ONE_FILE) :
	2514	{
[464]	2515
[676]	2516	std::vector<StdSize> start, count;
[464]	2517
[676]	2518	if (field->getUseCompressedOutput())
	2519	{
	2520	if (grid->isCompressible())
	2521	{
	2522	start.push_back(grid->getOffsetWrittenIndexes());
	2523	count.push_back(grid->getNumberWrittenIndexes());
	2524	}
	2525	else
	2526	{
[887]	2527	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[676]	2528	std::vector<StdString> domainList = grid->getDomainList();
	2529	std::vector<StdString> axisList = grid->getAxisList();
	2530	int numElement = axisDomainOrder.numElements();
	2531	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
[1553]	2532	int idx = domainList.size() * 2 + axisList.size() - 1;
[464]	2533
[1553]	2534	start.reserve(idx+1);
	2535	count.reserve(idx+1);
[676]	2536
	2537	for (int i = numElement - 1; i >= 0; --i)
	2538	{
[887]	2539	if (2 == axisDomainOrder(i))
[676]	2540	{
	2541	CDomain* domain = CDomain::get(domainList[idxDomain]);
	2542
	2543	if (domain->isCompressible())
	2544	{
[1249]	2545	start.push_back(domain->getOffsetWrittenIndexes(comm_file));
	2546	count.push_back(domain->getNumberWrittenIndexes(comm_file));
[710]	2547	idx -= 2;
[676]	2548	}
	2549	else
	2550	{
[710]	2551	if ((domain->type) != CDomain::type_attr::unstructured)
	2552	{
[1553]	2553	start.push_back(domain->jbegin);
	2554	count.push_back(domain->nj);
[710]	2555	}
	2556	--idx;
[1553]	2557	start.push_back(domain->ibegin);
	2558	count.push_back(domain->ni);
[710]	2559	--idx;
[676]	2560	}
	2561	--idxDomain;
	2562	}
[887]	2563	else if (1 == axisDomainOrder(i))
[676]	2564	{
	2565	CAxis* axis = CAxis::get(axisList[idxAxis]);
	2566
	2567	if (axis->isCompressible())
	2568	{
[1249]	2569	start.push_back(axis->getOffsetWrittenIndexes(comm_file));
	2570	count.push_back(axis->getNumberWrittenIndexes(comm_file));
[676]	2571	}
	2572	else
	2573	{
[1553]	2574	start.push_back(axis->begin);
	2575	count.push_back(axis->n);
[676]	2576	}
	2577	--idxAxis;
	2578	--idx;
	2579	}
	2580	}
[1158]	2581	}
[676]	2582	}
	2583	else
[498]	2584	{
[887]	2585	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[705]	2586	std::vector<StdString> domainList = grid->getDomainList();
	2587	std::vector<StdString> axisList = grid->getAxisList();
	2588	int numElement = axisDomainOrder.numElements();
	2589	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
[1553]	2590	int idx = domainList.size() * 2 + axisList.size() - 1;
[705]	2591
[1553]	2592	start.reserve(idx+1);
	2593	count.reserve(idx+1);
[705]	2594
	2595	for (int i = numElement - 1; i >= 0; --i)
	2596	{
[887]	2597	if (2 == axisDomainOrder(i))
[705]	2598	{
	2599	CDomain* domain = CDomain::get(domainList[idxDomain]);
[710]	2600	if ((domain->type) != CDomain::type_attr::unstructured)
[705]	2601	{
[1553]	2602	start.push_back(domain->jbegin);
	2603	count.push_back(domain->nj);
[705]	2604	}
	2605	--idx ;
[1143]	2606
[1553]	2607	start.push_back(domain->ibegin);
	2608	count.push_back(domain->ni);
[705]	2609	--idx ;
	2610	--idxDomain;
	2611	}
[887]	2612	else if (1 == axisDomainOrder(i))
[705]	2613	{
[1143]	2614	CAxis* axis = CAxis::get(axisList[idxAxis]);
[1559]	2615	start.push_back(axis->begin);
	2616	count.push_back(axis->n);
[705]	2617	--idx;
[1025]	2618	--idxAxis;
[887]	2619	}
	2620	else
	2621	{
	2622	if (1 == axisDomainOrder.numElements())
	2623	{
	2624	start.push_back(0);
	2625	count.push_back(1);
	2626	}
	2627	--idx;
	2628	}
[705]	2629	}
[498]	2630	}
[488]	2631
[1158]	2632
	2633	CTimer::get("Files : writing data").resume();
[676]	2634	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count);
[1158]	2635	CTimer::get("Files : writing data").suspend();
	2636
	2637	if (wtime)
	2638	{
	2639	CTimer::get("Files : writing time axis").resume();
	2640	if ( wtimeData)
[692]	2641	{
[1158]	2642	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
	2643	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
[692]	2644	}
[1158]	2645	if (wtimeCounter)
	2646	{
	2647	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
	2648	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
[586]	2649
[1158]	2650	}
	2651	CTimer::get("Files : writing time axis").suspend();
	2652	}
	2653
[586]	2654	break;
[286]	2655	}
[567]	2656	}
[219]	2657	}
[498]	2658	catch (CNetCdfException& e)
	2659	{
	2660	StdString msg("On writing field data: ");
	2661	msg.append(fieldid); msg.append("\n");
	2662	msg.append("In the context : ");
	2663	msg.append(context->getId()); msg.append("\n");
	2664	msg.append(e.what());
[1130]	2665	ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg);
[498]	2666	}
[219]	2667	}
	2668
	2669	//---------------------------------------------------------------
	2670
	2671	void CNc4DataOutput::writeTimeAxis_
[347]	2672	(CField* field,
[1542]	2673	const std::shared_ptr<CCalendar> cal)
[219]	2674	{
	2675	StdOStringStream oss;
[1158]	2676	bool createInstantAxis=false ;
	2677	bool createCenteredAxis=false ;
	2678	bool createTimeCounterAxis=false ;
	2679
[645]	2680	if (field->getOperationTimeType() == func::CFunctor::once) return ;
[488]	2681
	2682
[1158]	2683	StdString axisId ;
	2684	StdString axisBoundId;
[802]	2685	StdString timeid(getTimeCounterName());
[614]	2686	StdString timeBoundId("axis_nbounds");
[488]	2687
[1158]	2688	StdString strTimeUnits ;
	2689	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ;
	2690	else strTimeUnits="seconds since " ;
	2691
	2692	if (field->getOperationTimeType() == func::CFunctor::instant) field->hasTimeInstant = true;
	2693	if (field->getOperationTimeType() == func::CFunctor::centered) field->hasTimeCentered = true;
	2694
	2695
	2696	if (field->file->time_counter.isEmpty())
[488]	2697	{
[1158]	2698	if (timeCounterType==none) createTimeCounterAxis=true ;
	2699	if (field->hasTimeCentered)
	2700	{
	2701	timeCounterType=centered ;
	2702	if (!hasTimeCentered) createCenteredAxis=true ;
	2703	}
	2704	if (field->hasTimeInstant)
	2705	{
	2706	if (timeCounterType==none) timeCounterType=instant ;
	2707	if (!hasTimeInstant) createInstantAxis=true ;
	2708	}
[488]	2709	}
[1158]	2710	else if (field->file->time_counter==CFile::time_counter_attr::instant)
	2711	{
	2712	if (field->hasTimeCentered)
	2713	{
	2714	if (!hasTimeCentered) createCenteredAxis=true ;
	2715	}
	2716	if (field->hasTimeInstant)
	2717	{
	2718	if (timeCounterType==none) createTimeCounterAxis=true ;
	2719	timeCounterType=instant ;
	2720	if (!hasTimeInstant) createInstantAxis=true ;
	2721	}
	2722	}
	2723	else if (field->file->time_counter==CFile::time_counter_attr::centered)
	2724	{
	2725	if (field->hasTimeCentered)
	2726	{
	2727	if (timeCounterType==none) createTimeCounterAxis=true ;
	2728	timeCounterType=centered ;
	2729	if (!hasTimeCentered) createCenteredAxis=true ;
	2730	}
	2731	if (field->hasTimeInstant)
	2732	{
	2733	if (!hasTimeInstant) createInstantAxis=true ;
	2734	}
	2735	}
	2736	else if (field->file->time_counter==CFile::time_counter_attr::instant_exclusive)
	2737	{
	2738	if (field->hasTimeCentered)
	2739	{
	2740	if (!hasTimeCentered) createCenteredAxis=true ;
	2741	}
	2742	if (field->hasTimeInstant)
	2743	{
	2744	if (timeCounterType==none) createTimeCounterAxis=true ;
	2745	timeCounterType=instant ;
	2746	}
	2747	}
	2748	else if (field->file->time_counter==CFile::time_counter_attr::centered_exclusive)
	2749	{
	2750	if (field->hasTimeCentered)
	2751	{
	2752	if (timeCounterType==none) createTimeCounterAxis=true ;
	2753	timeCounterType=centered ;
	2754	}
	2755	if (field->hasTimeInstant)
	2756	{
	2757	if (!hasTimeInstant) createInstantAxis=true ;
	2758	}
	2759	}
	2760	else if (field->file->time_counter==CFile::time_counter_attr::exclusive)
	2761	{
	2762	if (field->hasTimeCentered)
	2763	{
	2764	if (timeCounterType==none) createTimeCounterAxis=true ;
	2765	if (timeCounterType==instant) createInstantAxis=true ;
	2766	timeCounterType=centered ;
	2767	}
	2768	if (field->hasTimeInstant)
	2769	{
	2770	if (timeCounterType==none)
	2771	{
	2772	createTimeCounterAxis=true ;
	2773	timeCounterType=instant ;
	2774	}
	2775	if (timeCounterType==centered)
	2776	{
	2777	if (!hasTimeInstant) createInstantAxis=true ;
	2778	}
	2779	}
	2780	}
	2781	else if (field->file->time_counter==CFile::time_counter_attr::none)
	2782	{
	2783	if (field->hasTimeCentered)
	2784	{
	2785	if (!hasTimeCentered) createCenteredAxis=true ;
	2786	}
	2787	if (field->hasTimeInstant)
	2788	{
	2789	if (!hasTimeInstant) createInstantAxis=true ;
	2790	}
	2791	}
	2792	else if (field->file->time_counter==CFile::time_counter_attr::record)
	2793	{
	2794	if (timeCounterType==none) createTimeCounterAxis=true ;
	2795	timeCounterType=record ;
	2796	if (field->hasTimeCentered)
	2797	{
	2798	if (!hasTimeCentered) createCenteredAxis=true ;
	2799	}
	2800	if (field->hasTimeInstant)
	2801	{
	2802	if (!hasTimeInstant) createInstantAxis=true ;
	2803	}
	2804	}
	2805
	2806	if (createInstantAxis)
	2807	{
	2808	axisId="time_instant" ;
	2809	axisBoundId="time_instant_bounds";
	2810	hasTimeInstant=true ;
	2811	}
[488]	2812
[1158]	2813	if (createCenteredAxis)
	2814	{
	2815	axisId="time_centered" ;
	2816	axisBoundId="time_centered_bounds";
	2817	hasTimeCentered=true ;
	2818	}
	2819
	2820
[498]	2821	try
[219]	2822	{
[1158]	2823	std::vector<StdString> dims;
	2824
	2825	if (createInstantAxis \|\| createCenteredAxis)
	2826	{
	2827	// Adding time_instant or time_centered
	2828	dims.push_back(timeid);
	2829	if (!SuperClassWriter::varExist(axisId))
	2830	{
	2831	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
[488]	2832
[1158]	2833	CDate timeOrigin=cal->getTimeOrigin() ;
	2834	StdOStringStream oss2;
	2835	StdString strInitdate=oss2.str() ;
	2836	StdString strTimeOrigin=timeOrigin.toString() ;
	2837	this->writeTimeAxisAttributes(axisId, cal->getType(),strTimeUnits+strTimeOrigin,
	2838	strTimeOrigin, axisBoundId);
	2839	}
[219]	2840
[1158]	2841	// Adding time_instant_bounds or time_centered_bounds variables
	2842	if (!SuperClassWriter::varExist(axisBoundId))
	2843	{
	2844	dims.clear() ;
	2845	dims.push_back(timeid);
	2846	dims.push_back(timeBoundId);
	2847	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
	2848	}
[498]	2849	}
[488]	2850
[1158]	2851	if (createTimeCounterAxis)
[498]	2852	{
[692]	2853	// Adding time_counter
[1158]	2854	axisId = getTimeCounterName();
[802]	2855	axisBoundId = getTimeCounterName() + "_bounds";
[692]	2856	dims.clear();
	2857	dims.push_back(timeid);
[1158]	2858	if (!SuperClassWriter::varExist(axisId))
[692]	2859	{
[1158]	2860	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
	2861	SuperClassWriter::addAttribute("axis", string("T"), &axisId);
[488]	2862
[1158]	2863	if (field->file->time_counter.isEmpty() \|\|
	2864	(field->file->time_counter != CFile::time_counter_attr::record))
[692]	2865	{
	2866	CDate timeOrigin = cal->getTimeOrigin();
	2867	StdString strTimeOrigin = timeOrigin.toString();
[498]	2868
[1158]	2869	this->writeTimeAxisAttributes(axisId, cal->getType(),
	2870	strTimeUnits+strTimeOrigin,
[692]	2871	strTimeOrigin, axisBoundId);
	2872	}
	2873	}
	2874
	2875	// Adding time_counter_bound dimension
[1158]	2876	if (field->file->time_counter.isEmpty() \|\| (field->file->time_counter != CFile::time_counter_attr::record))
[692]	2877	{
	2878	if (!SuperClassWriter::varExist(axisBoundId))
	2879	{
	2880	dims.clear();
	2881	dims.push_back(timeid);
	2882	dims.push_back(timeBoundId);
	2883	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
	2884	}
	2885	}
[498]	2886	}
[488]	2887	}
[498]	2888	catch (CNetCdfException& e)
[488]	2889	{
[498]	2890	StdString msg("On writing time axis data: ");
	2891	msg.append("In the context : ");
	2892	CContext* context = CContext::getCurrent() ;
	2893	msg.append(context->getId()); msg.append("\n");
	2894	msg.append(e.what());
	2895	ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \
[1542]	2896	const std::shared_ptr<CCalendar> cal)", << msg);
[488]	2897	}
[219]	2898	}
	2899
	2900	//---------------------------------------------------------------
[488]	2901
[219]	2902	void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name,
	2903	const StdString & calendar,
	2904	const StdString & units,
	2905	const StdString & time_origin,
[488]	2906	const StdString & time_bounds,
[219]	2907	const StdString & standard_name,
[613]	2908	const StdString & long_name)
[219]	2909	{
[498]	2910	try
	2911	{
	2912	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
	2913	SuperClassWriter::addAttribute("long_name", long_name , &axis_name);
	2914	SuperClassWriter::addAttribute("calendar", calendar , &axis_name);
	2915	SuperClassWriter::addAttribute("units", units , &axis_name);
	2916	SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name);
	2917	SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name);
	2918	}
	2919	catch (CNetCdfException& e)
	2920	{
	2921	StdString msg("On writing time axis Attribute: ");
	2922	msg.append("In the context : ");
	2923	CContext* context = CContext::getCurrent() ;
	2924	msg.append(context->getId()); msg.append("\n");
	2925	msg.append(e.what());
	2926	ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \
[613]	2927	const StdString & calendar,\
	2928	const StdString & units, \
	2929	const StdString & time_origin, \
	2930	const StdString & time_bounds, \
	2931	const StdString & standard_name, \
	2932	const StdString & long_name)", << msg);
[498]	2933	}
[219]	2934	}
[488]	2935
[219]	2936	//---------------------------------------------------------------
	2937
	2938	void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name,
	2939	const StdString & axis,
	2940	const StdString & standard_name,
	2941	const StdString & long_name,
	2942	const StdString & units,
	2943	const StdString & nav_model)
	2944	{
[498]	2945	try
	2946	{
[613]	2947	if (!axis.empty())
	2948	SuperClassWriter::addAttribute("axis" , axis , &axis_name);
	2949
[498]	2950	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
	2951	SuperClassWriter::addAttribute("long_name" , long_name , &axis_name);
	2952	SuperClassWriter::addAttribute("units" , units , &axis_name);
[973]	2953	// SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name);
[498]	2954	}
	2955	catch (CNetCdfException& e)
	2956	{
	2957	StdString msg("On writing Axis Attribute: ");
	2958	msg.append("In the context : ");
	2959	CContext* context = CContext::getCurrent() ;
	2960	msg.append(context->getId()); msg.append("\n");
	2961	msg.append(e.what());
	2962	ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \
[613]	2963	const StdString & axis, \
	2964	const StdString & standard_name, \
	2965	const StdString & long_name, \
	2966	const StdString & units, \
	2967	const StdString & nav_model)", << msg);
[498]	2968	}
[219]	2969	}
	2970
	2971	//---------------------------------------------------------------
[488]	2972
[219]	2973	void CNc4DataOutput::writeLocalAttributes
	2974	(int ibegin, int ni, int jbegin, int nj, StdString domid)
	2975	{
[498]	2976	try
	2977	{
[318]	2978	SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin);
	2979	SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni);
	2980	SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin);
	2981	SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj);
[498]	2982	}
	2983	catch (CNetCdfException& e)
	2984	{
	2985	StdString msg("On writing Local Attributes: ");
	2986	msg.append("In the context : ");
	2987	CContext* context = CContext::getCurrent() ;
	2988	msg.append(context->getId()); msg.append("\n");
	2989	msg.append(e.what());
	2990	ERROR("CNc4DataOutput::writeLocalAttributes \
	2991	(int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg);
	2992	}
	2993
[219]	2994	}
	2995
[628]	2996	void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid,
	2997	int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)
[391]	2998	{
	2999	CArray<int,1> array(2) ;
	3000
[498]	3001	try
	3002	{
	3003	SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ;
	3004	SuperClassWriter::addAttribute("DOMAIN_number", rank) ;
[629]	3005	array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1;
[498]	3006	SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ;
	3007	array=ni_glo,nj_glo ;
	3008	SuperClassWriter::addAttribute("DOMAIN_size_global", array) ;
	3009	array=ni,nj ;
	3010	SuperClassWriter::addAttribute("DOMAIN_size_local", array) ;
[819]	3011	array=ibegin+1,jbegin+1 ;
[498]	3012	SuperClassWriter::addAttribute("DOMAIN_position_first", array) ;
[819]	3013	array=ibegin+ni-1+1,jbegin+nj-1+1 ;
[498]	3014	SuperClassWriter::addAttribute("DOMAIN_position_last",array) ;
	3015	array=0,0 ;
	3016	SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ;
	3017	SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array);
	3018	SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ;
	3019	/*
	3020	SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ;
	3021	SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ;
	3022	SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ;
	3023	SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ;
	3024	*/
	3025	}
	3026	catch (CNetCdfException& e)
	3027	{
[628]	3028	StdString msg("On writing Local Attributes IOIPSL \n");
[498]	3029	msg.append("In the context : ");
	3030	CContext* context = CContext::getCurrent() ;
	3031	msg.append(context->getId()); msg.append("\n");
	3032	msg.append(e.what());
	3033	ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \
	3034	(int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg);
	3035	}
[391]	3036	}
[219]	3037	//---------------------------------------------------------------
	3038
	3039	void CNc4DataOutput:: writeFileAttributes(const StdString & name,
	3040	const StdString & description,
	3041	const StdString & conventions,
	3042	const StdString & production,
	3043	const StdString & timeStamp)
	3044	{
[498]	3045	try
	3046	{
	3047	SuperClassWriter::addAttribute("name" , name);
	3048	SuperClassWriter::addAttribute("description", description);
[613]	3049	SuperClassWriter::addAttribute("title" , description);
	3050	SuperClassWriter::addAttribute("Conventions", conventions);
[1158]	3051	// SuperClassWriter::addAttribute("production" , production);
	3052
	3053	StdString timeStampStr ;
	3054	if (file->time_stamp_name.isEmpty()) timeStampStr="timeStamp" ;
	3055	else timeStampStr=file->time_stamp_name ;
	3056	SuperClassWriter::addAttribute(timeStampStr, timeStamp);
	3057
	3058	StdString uuidName ;
	3059	if (file->uuid_name.isEmpty()) uuidName="uuid" ;
	3060	else uuidName=file->uuid_name ;
	3061
	3062	if (file->uuid_format.isEmpty()) SuperClassWriter::addAttribute(uuidName, getUuidStr());
	3063	else SuperClassWriter::addAttribute(uuidName, getUuidStr(file->uuid_format));
	3064
[498]	3065	}
	3066	catch (CNetCdfException& e)
	3067	{
	3068	StdString msg("On writing File Attributes \n ");
	3069	msg.append("In the context : ");
	3070	CContext* context = CContext::getCurrent() ;
	3071	msg.append(context->getId()); msg.append("\n");
	3072	msg.append(e.what());
	3073	ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \
	3074	const StdString & description, \
	3075	const StdString & conventions, \
	3076	const StdString & production, \
	3077	const StdString & timeStamp)", << msg);
	3078	}
[219]	3079	}
	3080
	3081	//---------------------------------------------------------------
	3082
	3083	void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name,
	3084	int data_dim,
	3085	int data_ni,
	3086	int data_nj,
	3087	int data_ibegin,
	3088	int data_jbegin)
	3089	{
[498]	3090	try
	3091	{
	3092	SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name);
	3093	SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name);
	3094	SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name);
	3095	SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name);
	3096	SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name);
	3097	}
	3098	catch (CNetCdfException& e)
	3099	{
	3100	StdString msg("On writing Mask Attributes \n ");
	3101	msg.append("In the context : ");
	3102	CContext* context = CContext::getCurrent() ;
	3103	msg.append(context->getId()); msg.append("\n");
	3104	msg.append(e.what());
	3105	ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \
	3106	int data_dim, \
	3107	int data_ni, \
	3108	int data_nj, \
	3109	int data_ibegin, \
	3110	int data_jbegin)", << msg);
	3111	}
[219]	3112	}
	3113
	3114	///--------------------------------------------------------------
	3115
[1158]	3116	StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit)
[707]	3117	{
	3118	std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time);
	3119	if (it == timeToRecordCache.end())
	3120	{
[802]	3121	StdString timeAxisBoundsId(getTimeCounterName() + "_bounds");
[1158]	3122	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_centered_bounds";
	3123	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_instant_bounds";
[707]	3124
	3125	CArray<double,2> timeAxisBounds;
[1158]	3126	std::vector<StdSize> dimSize(SuperClassWriter::getDimensions(timeAxisBoundsId)) ;
	3127
[707]	3128	StdSize record = 0;
	3129	double dtime(time);
[1158]	3130	for (int n = dimSize[0] - 1; n >= 0; n--)
[707]	3131	{
[1158]	3132	SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective, n);
	3133	timeAxisBounds*=factorUnit ;
	3134	if (timeAxisBounds(1, 0) < dtime)
[707]	3135	{
	3136	record = n + 1;
	3137	break;
	3138	}
	3139	}
	3140	it = timeToRecordCache.insert(std::make_pair(time, record)).first;
	3141	}
	3142	return it->second;
	3143	}
[774]	3144
	3145	///--------------------------------------------------------------
	3146
	3147	bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const
	3148	{
	3149	return (this->writtenDomains.find(domainName) != this->writtenDomains.end());
	3150	}
	3151
	3152	bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const
	3153	{
	3154	return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end());
	3155	}
	3156
	3157	bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const
	3158	{
	3159	return (this->writtenAxis.find(axisName) != this->writtenAxis.end());
	3160	}
	3161
	3162	bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const
	3163	{
	3164	return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end());
	3165	}
	3166
[887]	3167	bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const
	3168	{
	3169	return (this->writtenScalar.find(scalarName) != this->writtenScalar.end());
	3170	}
	3171
[774]	3172	void CNc4DataOutput::setWrittenDomain(const std::string& domainName)
	3173	{
	3174	this->writtenDomains.insert(domainName);
	3175	}
	3176
	3177	void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName)
	3178	{
	3179	this->writtenCompressedDomains.insert(domainName);
	3180	}
	3181
	3182	void CNc4DataOutput::setWrittenAxis(const std::string& axisName)
	3183	{
	3184	this->writtenAxis.insert(axisName);
	3185	}
	3186
	3187	void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName)
	3188	{
	3189	this->writtenCompressedAxis.insert(axisName);
	3190	}
[887]	3191
	3192	void CNc4DataOutput::setWrittenScalar(const std::string& scalarName)
	3193	{
	3194	this->writtenScalar.insert(scalarName);
	3195	}
[335]	3196	} // namespace xios

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