1 | #ifndef __XMLIO_INETCDF4__ |
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2 | #define __XMLIO_INETCDF4__ |
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3 | |
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4 | /// xios headers /// |
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5 | #include "xmlioserver_spl.hpp" |
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6 | #include "exception.hpp" |
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7 | #include "array_new.hpp" |
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8 | |
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9 | #include "mpi.hpp" |
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10 | #include "netcdf.hpp" |
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11 | |
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12 | #ifndef UNLIMITED_DIM |
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13 | #define UNLIMITED_DIM (size_t)(-1) |
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14 | #endif //UNLIMITED_DIM |
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15 | |
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16 | namespace xios |
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17 | { |
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18 | /// ////////////////////// Déclarations ////////////////////// /// |
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19 | typedef std::vector<StdString> CVarPath; |
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20 | |
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21 | class CINetCDF4 |
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22 | { |
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23 | public : |
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24 | |
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25 | /// Constructeurs /// |
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26 | CINetCDF4(void); // Not implemented. |
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27 | CINetCDF4(const StdString & filename); |
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28 | CINetCDF4(const CINetCDF4 & inetcdf4); // Not implemented. |
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29 | CINetCDF4(const CINetCDF4 * const inetcdf4); // Not implemented. |
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30 | |
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31 | //------------------------------------------------------------- |
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32 | |
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33 | /// Accesseurs /// |
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34 | StdSize getNbOfTimestep(const CVarPath * const path = NULL); |
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35 | |
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36 | StdString getUnlimitedDimensionName(const CVarPath * const path = NULL); |
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37 | |
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38 | StdString getCoordinatesId(const StdString & name, |
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39 | const CVarPath * const path = NULL); |
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40 | |
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41 | StdString getBoundsId(const StdString & name, |
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42 | const CVarPath * const path = NULL); |
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43 | |
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44 | StdString getLonCoordName(const StdString & varname, |
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45 | const CVarPath * const path = NULL); |
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46 | StdString getLatCoordName(const StdString & varname, |
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47 | const CVarPath * const path = NULL); |
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48 | StdString getVertCoordName(const StdString & varname, |
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49 | const CVarPath * const path = NULL); |
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50 | |
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51 | std::set<StdString> getCoordVariables(const CVarPath * const path = NULL); |
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52 | std::set<StdString> getBoundVariables(const CVarPath * const path = NULL); |
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53 | |
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54 | std::list<StdString> getGroups (const CVarPath * const path = NULL); |
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55 | std::list<StdString> getVariables(const CVarPath * const path = NULL); |
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56 | |
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57 | std::list<StdString> getDataVariables(bool _is3D = true, |
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58 | bool _isRecti = true, |
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59 | bool _isCurvi = true, |
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60 | bool _isUnstr = true, |
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61 | bool _isCellData = true, |
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62 | bool _isTemporal = true, |
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63 | const CVarPath * const path = NULL); |
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64 | |
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65 | std::list<StdString> getAttributes |
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66 | (const StdString * const var = NULL, |
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67 | const CVarPath * const path = NULL); |
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68 | |
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69 | std::list<StdString> getDimensionsList |
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70 | (const StdString * const var = NULL, |
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71 | const CVarPath * const path = NULL); |
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72 | |
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73 | std::list<StdString> getCoordinatesIdList(const StdString & name, |
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74 | const CVarPath * const path = NULL); |
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75 | |
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76 | std::map<StdString, StdSize> getDimensions (const StdString * const var = NULL, |
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77 | const CVarPath * const path = NULL); |
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78 | |
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79 | StdSize getNbVertex(const StdString & name, |
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80 | const CVarPath * const path = NULL); |
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81 | //------------------------------------------------------------- |
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82 | |
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83 | template <class T> |
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84 | T getMissingValue(const StdString & name, |
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85 | const CVarPath * const path = NULL); |
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86 | |
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87 | template <class T> |
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88 | T getAttributeValue(const StdString & name, |
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89 | const StdString * const var = NULL, |
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90 | const CVarPath * const path = NULL); |
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91 | |
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92 | template <class T> |
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93 | void getData(CArray<T, 1>& data, |
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94 | const StdString & var, |
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95 | const CVarPath * const path = NULL, |
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96 | StdSize record = UNLIMITED_DIM); |
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97 | |
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98 | //------------------------------------------------------------- |
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99 | |
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100 | /// Tests /// |
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101 | bool hasMissingValue(const StdString & name, |
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102 | const CVarPath * const path = NULL); |
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103 | |
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104 | bool hasAttribute(const StdString & name, |
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105 | const StdString * const var = NULL, |
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106 | const CVarPath * const path = NULL); |
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107 | |
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108 | bool hasVariable(const StdString & name, |
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109 | const CVarPath * const path = NULL); |
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110 | |
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111 | bool hasCoordinates(const StdString & name, |
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112 | const CVarPath * const path = NULL); |
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113 | |
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114 | bool hasTemporalDim(const CVarPath * const path = NULL); |
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115 | |
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116 | bool hasBounds(const StdString & name, |
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117 | const CVarPath * const path = NULL); |
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118 | |
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119 | //------------------------------------------------------------- |
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120 | |
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121 | bool isBound(const StdString & name, |
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122 | const CVarPath * const path = NULL); |
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123 | bool isCoordinate(const StdString & name, |
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124 | const CVarPath * const path = NULL); |
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125 | bool isRectilinear(const StdString & name, |
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126 | const CVarPath * const path = NULL); |
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127 | bool isCurvilinear(const StdString & name, |
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128 | const CVarPath * const path = NULL); |
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129 | bool isUnknown(const StdString & name, |
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130 | const CVarPath * const path = NULL); |
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131 | bool isUnstructured(const StdString & name, |
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132 | const CVarPath * const path = NULL); |
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133 | |
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134 | bool isTemporal(const StdString & name, |
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135 | const CVarPath * const path = NULL); |
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136 | bool is3Dim(const StdString & name, |
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137 | const CVarPath * const path = NULL); |
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138 | bool isCellGrid(const StdString & name, |
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139 | const CVarPath * const path = NULL); |
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140 | |
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141 | //------------------------------------------------------------- |
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142 | |
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143 | /// Destructeur /// |
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144 | virtual ~CINetCDF4(void); |
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145 | |
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146 | protected : |
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147 | |
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148 | //------------------------------------------------------------- |
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149 | |
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150 | /// Accesseurs /// |
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151 | int getGroup (const CVarPath * const path = NULL); |
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152 | int getVariable(const StdString & varname, |
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153 | const CVarPath * const path = NULL); |
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154 | int getDimension(const StdString & dimname, |
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155 | const CVarPath * const path = NULL); |
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156 | int getUnlimitedDimension(const CVarPath * const path = NULL); |
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157 | int getAttributeId(const StdString & name, |
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158 | const StdString * const var = NULL, |
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159 | const CVarPath * const path = NULL); |
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160 | |
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161 | std::pair<nc_type , StdSize> getAttribute(const StdString & attname, |
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162 | const StdString * const var = NULL, |
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163 | const CVarPath * const path = NULL); |
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164 | |
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165 | //------------------------------------------------------------- |
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166 | |
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167 | void getDataInfo(const StdString & var, const CVarPath * const path, StdSize record, |
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168 | std::vector<StdSize> & start, std::vector<StdSize> & count, |
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169 | StdSize & array_size); |
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170 | |
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171 | private : |
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172 | |
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173 | /// Vérification des erreurs NetCDF /// |
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174 | static void CheckError(int status); |
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175 | |
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176 | int ncidp; // Identifiant de fichier netcdf. |
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177 | |
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178 | }; // class CINetCDF4 |
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179 | |
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180 | ///-------------------------------------------------------------- |
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181 | template <> |
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182 | StdString CINetCDF4::getAttributeValue |
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183 | (const StdString & name, const StdString * const var, |
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184 | const CVarPath * const path); |
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185 | |
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186 | template <> |
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187 | std::vector<double> CINetCDF4::getAttributeValue |
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188 | (const StdString & name, const StdString * const var, |
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189 | const CVarPath * const path); |
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190 | |
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191 | template <> |
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192 | std::vector<float> CINetCDF4::getAttributeValue |
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193 | (const StdString & name, const StdString * const var, |
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194 | const CVarPath * const path); |
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195 | |
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196 | template <> |
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197 | std::vector<int> CINetCDF4::getAttributeValue |
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198 | (const StdString & name, const StdString * const var, |
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199 | const CVarPath * const path); |
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200 | |
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201 | template <> |
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202 | std::vector<char> CINetCDF4::getAttributeValue |
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203 | (const StdString & name, const StdString * const var, |
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204 | const CVarPath * const path); |
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205 | |
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206 | //--------------------------------------------------------------- |
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207 | template <> |
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208 | int CINetCDF4::getMissingValue |
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209 | (const StdString & name, const CVarPath * const path); |
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210 | |
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211 | template <> |
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212 | double CINetCDF4::getMissingValue |
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213 | (const StdString & name, const CVarPath * const path); |
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214 | |
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215 | template <> |
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216 | float CINetCDF4::getMissingValue |
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217 | (const StdString & name, const CVarPath * const path); |
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218 | |
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219 | //--------------------------------------------------------------- |
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220 | template <> |
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221 | void CINetCDF4::getData(CArray<int, 1>& data, const StdString & var, |
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222 | const CVarPath * const path, StdSize record); |
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223 | |
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224 | template <> |
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225 | void CINetCDF4::getData(CArray<double, 1>& data, const StdString & var, |
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226 | const CVarPath * const path, StdSize record); |
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227 | |
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228 | template <> |
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229 | void CINetCDF4::getData(CArray<float, 1>& data, const StdString & var, |
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230 | const CVarPath * const path, StdSize record); |
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231 | ///-------------------------------------------------------------- |
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232 | |
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233 | } // namespace xmlioserver |
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234 | |
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235 | #endif //__XMLIO_INETCDF4__ |
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