source: XIOS/dev/dev_ym/XIOS_COUPLING/src/transformation/generic_algorithm_transformation.hpp @ 2003

Last change on this file since 2003 was 1999, checked in by ymipsl, 3 years ago

Adapt transformation algorithm to new infrastructure (on going...)

YM

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1/*!
2   \file generic_algorithm_transformation.hpp
3   \author Ha NGUYEN
4   \since 14 May 2015
5   \date 29 June 2015
6
7   \brief Interface for all transformation algorithms.
8 */
9#ifndef __XIOS_GENERIC_ALGORITHM_TRANSFORMATION_HPP__
10#define __XIOS_GENERIC_ALGORITHM_TRANSFORMATION_HPP__
11
12#include <map>
13#include <set>
14#include "array_new.hpp"
15#include "client_client_dht_template.hpp"
16#include "local_view.hpp"
17#include "transform_connector.hpp"
18#include "weight_transform_connector.hpp"
19
20namespace xios
21{
22  class CGrid;
23  class CDomain;
24  class CAxis;
25  class CScalar;
26  class CGridAlgorithm ;
27
28  /*!
29  \class CGenericAlgorithmTransformation
30  This class defines the interface for all other inherited algorithms class
31  */
32class CGenericAlgorithmTransformation
33{
34public:
35  enum AlgoTransType {
36    ELEMENT_GENERATION = 0,
37    ELEMENT_MODIFICATION_WITHOUT_DATA = 1,
38    ELEMENT_MODIFICATION_WITH_DATA = 2,
39    ELEMENT_NO_MODIFICATION_WITH_DATA = 3,
40    ELEMENT_NO_MODIFICATION_WITHOUT_DATA = 4
41  } ;
42
43public:
44  // Mapping between global index map of DESTINATION and its local index with pair of global index of SOURCE and weights
45  typedef std::unordered_map<int, std::unordered_map<size_t, std::vector<std::pair<size_t,double> > > > SourceDestinationIndexMap;
46
47protected:
48  typedef std::unordered_map<size_t,int> GlobalLocalMap;
49protected:
50  typedef std::unordered_map<int, std::vector<int> > TransformationIndexMap;
51  typedef std::unordered_map<int, std::vector<double> > TransformationWeightMap;
52  typedef std::unordered_map<int, std::vector<int> > TransformationPositionMap;
53
54public:
55  //CGenericAlgorithmTransformation();
56  CGenericAlgorithmTransformation(bool isSource);
57
58  virtual ~CGenericAlgorithmTransformation() {}
59
60  bool isDistributedTransformation(int elementPositionInGrid, CGrid* gridSrc, CGrid* gridDst) ;
61
62  void computeGlobalSourceIndex(int elementPositionInGrid,
63                               CGrid* gridSrc,
64                               CGrid* gridDst,
65                               SourceDestinationIndexMap& globaIndexWeightFromSrcToDst);
66
67    /*!
68    Apply a operation on local data.
69    \param [in] localIndex vector contains local index of local data output and the corresponding weight
70    \param [in] dataInput Pointer to the first element of data input array (in form of buffer)
71    \param [in/out] dataOut Array contains local data
72    \param [in/out] flagInitial vector of boolean to mark the local index already initialized. True means there is a need for initalization
73    \param [in] ignoreMissingValue don't count missing value in operation if this flag is true
74    \param [in] firstPass indicate if it is the first time the apply funtion is called for a same transformation, in order to make a clean initialization
75  */
76  virtual void apply(const std::vector<std::pair<int,double> >& localIndex,
77                     const double* dataInput,
78                     CArray<double,1>& dataOut,
79                     std::vector<bool>& flagInitial,                     
80                     bool ignoreMissingValue, bool firstPass);
81
82  /*!
83   * Update whole dataOut (on necessary).
84   * (Example:  Impose a weight, whose value is only known after being applied an operation, on dataOut)
85   * \param [in/out] dataOut dataOut
86   */
87  virtual void updateData(CArray<double,1>& dataOut);
88
89  std::vector<StdString> getIdAuxInputs();
90  AlgoTransType type();
91  /*!
92  Compute global index mapping from one element of destination grid to the corresponding element of source grid
93  */
94  void computeIndexSourceMapping(const std::vector<CArray<double,1>* >& dataAuxInputs = std::vector<CArray<double,1>* >());
95  void computeTransformationMappingNonDistributed(int elementPositionInGrid, CGrid* gridSrc, CGrid* gridDst,
96                                                  vector<int>& localSrc, vector<int>& localDst, vector<double>& weight, int& nbLocalIndexOnGridDest);
97  void nonDistributedrecursiveFunct(int currentPos, bool masked, int elementPositionInGrid,  vector< CArray<bool,1>* >& maskSrc, vector< CArray<bool,1>* >& maskDst,
98                                    int& srcInd, int& srcIndCompressed, vector<int>& nIndexSrc,
99                                    int& t, vector<vector<vector<pair<int,double> > > >& dstIndWeight, int currentInd,
100                                    vector<int>& localSrc, vector<int>& localDst, vector<double>& weight) ;
101
102protected:
103  virtual void computeIndexSourceMapping_(const std::vector<CArray<double,1>* >&) {};
104
105  /*!
106  Compute proc which contains global index of an element
107    \param[in] globalElementIndex demanding global index of an element of source grid
108    \param[in] elementType type of source element, 2: domain, 1: axis and 0: scalar
109    \param[out] globalElementIndexOnProc Proc contains the demanding global index
110  */
111  virtual void computeExchangeGlobalIndex(const CArray<size_t,1>& globalElementIndex,
112                                          int elementType,
113                                          CClientClientDHTInt::Index2VectorInfoTypeMap& globalElementIndexOnProc){};
114
115protected:
116  void computeGlobalGridIndexMapping(int elementPositionInGrid,
117                                     const std::vector<int>& srcRank,
118                                     std::unordered_map<int, std::vector<std::pair<int,double> > >& src2DstMap,
119                                     CGrid* gridDst,
120                                     CGrid* gridSrc,
121                                     std::vector<std::unordered_map<int,std::vector<size_t> > >& globalElementIndexOnProc,
122                                     SourceDestinationIndexMap& globaIndexWeightFromSrcToDst);
123
124  void computeExchangeDomainIndex(CDomain* domainDst,
125                                  CDomain* domainSrc,
126                                  CArray<size_t,1>& destGlobalIndexPositionInGrid,
127                                  std::unordered_map<int,std::vector<size_t> >& globalDomainIndexOnProc);
128
129  void computeExchangeAxisIndex(CAxis* axisDst,
130                                CAxis* axisSrc,
131                                CArray<size_t,1>& destGlobalIndexPositionInGrid,
132                                std::unordered_map<int,std::vector<size_t> >& globalAxisIndexOnProc);
133
134  void computeExchangeScalarIndex(CScalar* scalarDst,
135                                  CScalar* scalarSrc,
136                                  CArray<size_t,1>& destGlobalIndexPositionInGrid,
137                                  std::unordered_map<int,std::vector<size_t> >& globalScalarIndexOnProc);
138
139  void computePositionElements(CGrid* dst, CGrid* src);
140
141protected:
142  //! indicate if the transformation is performed on a distributed element
143  bool isDistributed_ ;
144  //! indicate if the method  isDistributedTransformation has been called before
145  bool isDistributedComputed_ ;
146 
147  //! Map between global index of destination element and source element
148  std::vector<TransformationIndexMap> transformationMapping_;
149  //! Weight corresponding of source to destination
150  std::vector<TransformationWeightMap> transformationWeight_;
151  //! Map of global index of destination element and corresponding global index of other elements in the same grid
152  //! By default, one index of an element corresponds to all index of remaining element in the grid. So it's empty
153  std::vector<TransformationPositionMap> transformationPosition_;
154
155  //! Id of auxillary inputs which helps doing transformation dynamically
156  std::vector<StdString> idAuxInputs_;
157  AlgoTransType type_;
158
159  std::set<StdSize> indexElementSrc_;
160
161  std::vector<std::unordered_map<int,std::vector<size_t> > > globalElementIndexOnProc_;
162
163  std::vector<int> procContainSrcElementIdx_;  // List of processes containing source index of transformed elements
164//  std::set<int> procOfNonTransformedElements_; // Processes contain the source index of non-transformed elements
165  std::set<int> commonProc_;
166  std::vector< set<int> > procElementList_ ; // List of processes containing source index of elements
167
168  CClientClientDHTInt::Index2VectorInfoTypeMap globalIndexOfTransformedElementOnProc_;
169 
170  bool computedProcSrcNonTransformedElement_; // Flag to indicate whether we computed proc containing non transformed elements
171
172  std::map<int, int> elementPositionInGridSrc2AxisPosition_, elementPositionInGridSrc2DomainPosition_, elementPositionInGridSrc2ScalarPosition_;
173  std::map<int, int> elementPositionInGridDst2AxisPosition_, elementPositionInGridDst2DomainPosition_, elementPositionInGridDst2ScalarPosition_;
174
175  bool eliminateRedondantSrc_ ; // flag to indicate if the transformation must select only one global source point for all proc.
176                               // In this case it will choose preferentially the current process
177  bool isSource_ ; //flag to indicate that the algorithm is a source algorithm, that mean the grid is modified or generated but
178                   // no fluxes are tranformed
179 
180// new methods for new algorithm
181
182  public : 
183 
184    virtual void computeAlgorithm(CLocalView* srcView, CLocalView* dstView) ;
185    virtual void apply(int dimBefore, int dimAfter, const CArray<double,1>& dataIn, CArray<double,1>& dataOut);
186    virtual CGridAlgorithm* createGridAlgorithm(CGrid* gridSrc, CGrid* newGrid, int pos) ;
187    virtual void computeRecvElement(CLocalView* srcView, CLocalView* dstView) ;
188  protected :
189
190    CLocalElement* recvElement_=nullptr ;
191  public:
192    CLocalElement* getRecvElement(void) { return recvElement_ ;}
193 
194  protected:
195    CTransformConnector* transformConnector_ ;
196    CWeightTransformConnector* weightTransformConnector_ ;
197
198};
199
200}
201#endif // __XIOS_GENERIC_ALGORITHM_TRANSFORMATION_HPP__
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