[219] | 1 | #include "nc4_data_input.hpp" |
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| 2 | |
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[599] | 3 | #include "context.hpp" |
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| 4 | #include "context_server.hpp" |
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[775] | 5 | #include "context_client.hpp" |
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| 6 | #include "domain.hpp" |
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| 7 | #include "axis.hpp" |
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[967] | 8 | #include "scalar.hpp" |
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[599] | 9 | |
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[335] | 10 | namespace xios |
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[219] | 11 | { |
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[1639] | 12 | CNc4DataInput::CNc4DataInput(const StdString& filename, MPI_Comm comm_file, bool multifile, bool isCollective /*= true*/, |
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[1486] | 13 | bool readMetaDataPar /*= false*/, bool ugridConvention /*= false*/, const StdString& timeCounterName /*= "time_counter"*/) |
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[599] | 14 | : SuperClass() |
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[1485] | 15 | , SuperClassWriter(filename, &comm_file, multifile, readMetaDataPar, timeCounterName) |
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[599] | 16 | , comm_file(comm_file) |
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| 17 | , filename(filename) |
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| 18 | , isCollective(isCollective) |
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[1486] | 19 | , ugridConvention(ugridConvention) |
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[775] | 20 | , readMetaDataDomains_(), readValueDomains_() |
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| 21 | , readMetaDataAxis_(), readValueAxis_() |
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[967] | 22 | , readMetaDataScalar_(), readValueScalar_() |
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[599] | 23 | { |
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| 24 | SuperClass::type = multifile ? MULTI_FILE : ONE_FILE; |
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| 25 | } |
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[219] | 26 | |
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[599] | 27 | CNc4DataInput::~CNc4DataInput(void) |
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| 28 | { /* Nothing more to do */ } |
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[219] | 29 | |
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[599] | 30 | StdSize CNc4DataInput::getFieldNbRecords_(CField* field) |
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[1622] | 31 | TRY |
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[599] | 32 | { |
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[770] | 33 | StdString fieldId = field->getFieldOutputName(); |
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[599] | 34 | |
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| 35 | if (SuperClassWriter::isTemporal(fieldId)) |
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| 36 | { |
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[811] | 37 | // return SuperClassWriter::getDimensions(&fieldId)[SuperClassWriter::getUnlimitedDimensionName()]; |
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| 38 | return SuperClassWriter::getDimensions(&fieldId)[SuperClassWriter::getTimeCounterName()]; |
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[599] | 39 | } |
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| 40 | |
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| 41 | return 1; |
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| 42 | } |
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[1622] | 43 | CATCH |
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[599] | 44 | |
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[1930] | 45 | void CNc4DataInput::readFieldData_(CField* field, int record, CArray<double,1>& dataOut) |
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[1622] | 46 | TRY |
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[599] | 47 | { |
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| 48 | CContext* context = CContext::getCurrent(); |
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| 49 | |
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[1869] | 50 | CGrid* grid = field->getGrid(); |
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[599] | 51 | |
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[1930] | 52 | if (!grid->doGridHaveDataToWrite()) if (SuperClass::type==MULTI_FILE || !isCollective) return; |
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[599] | 53 | |
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[770] | 54 | StdString fieldId = field->getFieldOutputName(); |
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[599] | 55 | |
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| 56 | switch (SuperClass::type) |
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| 57 | { |
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| 58 | case MULTI_FILE: |
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[1930] | 59 | SuperClassWriter::getData(dataOut, fieldId, isCollective, record ); |
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[599] | 60 | break; |
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| 61 | case ONE_FILE: |
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| 62 | { |
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[765] | 63 | std::vector<StdSize> start, count; |
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| 64 | |
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[887] | 65 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
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[765] | 66 | std::vector<StdString> domainList = grid->getDomainList(); |
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| 67 | std::vector<StdString> axisList = grid->getAxisList(); |
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| 68 | int numElement = axisDomainOrder.numElements(); |
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| 69 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
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[1553] | 70 | int idx = domainList.size() * 2 + axisList.size() - 1; |
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[765] | 71 | |
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[1553] | 72 | start.reserve(idx+1); |
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| 73 | count.reserve(idx+1); |
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[765] | 74 | |
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| 75 | for (int i = numElement - 1; i >= 0; --i) |
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| 76 | { |
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[887] | 77 | if (2 == axisDomainOrder(i)) |
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[765] | 78 | { |
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| 79 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
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| 80 | if ((domain->type) != CDomain::type_attr::unstructured) |
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| 81 | { |
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[1553] | 82 | start.push_back(domain->jbegin); |
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| 83 | count.push_back(domain->nj); |
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[765] | 84 | } |
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[1553] | 85 | start.push_back(domain->ibegin); |
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| 86 | count.push_back(domain->ni); |
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[765] | 87 | --idxDomain; |
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| 88 | } |
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[887] | 89 | else if (1 == axisDomainOrder(i)) |
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[765] | 90 | { |
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[1553] | 91 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
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| 92 | start.push_back(axis->begin); |
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| 93 | count.push_back(axis->n); |
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[1573] | 94 | --idxAxis ; |
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[967] | 95 | } |
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| 96 | else |
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| 97 | { |
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| 98 | if (1 == axisDomainOrder.numElements()) |
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| 99 | { |
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| 100 | start.push_back(0); |
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| 101 | count.push_back(1); |
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| 102 | } |
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| 103 | } |
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[765] | 104 | } |
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[777] | 105 | |
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[1930] | 106 | SuperClassWriter::getData(dataOut, fieldId, isCollective, record, &start, &count); |
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[599] | 107 | break; |
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| 108 | } |
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| 109 | } |
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| 110 | } |
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[1622] | 111 | CATCH |
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[599] | 112 | |
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[775] | 113 | void CNc4DataInput::readFieldAttributes_(CField* field, bool readAttributeValues) |
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[1622] | 114 | TRY |
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[775] | 115 | { |
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[777] | 116 | StdString fieldId = field->getFieldOutputName(); |
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[775] | 117 | |
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[1869] | 118 | CGrid* grid = field->getGrid(); |
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[775] | 119 | |
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| 120 | std::vector<CDomain*> domainP = grid->getDomains(); |
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| 121 | std::vector<CAxis*> axisP = grid->getAxis(); |
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[967] | 122 | std::vector<CScalar*> scalarP = grid->getScalars(); |
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[775] | 123 | int gridDim = domainP.size() * 2 + axisP.size(); |
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| 124 | |
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[967] | 125 | // Nothing to do with scalar without timestep |
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| 126 | if ((0 == gridDim) && (!SuperClassWriter::isTemporal(fieldId))) |
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| 127 | return; |
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| 128 | |
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[775] | 129 | // Verify the compatibility of dimension of declared grid and real grid in file |
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| 130 | int realGridDim = 1; |
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[1563] | 131 | bool isUnstructuredGrid = ((gridDim < 2) ? false : SuperClassWriter::isUnstructured(fieldId)); |
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[775] | 132 | std::map<StdString, StdSize> dimSizeMap = SuperClassWriter::getDimensions(&fieldId); |
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[807] | 133 | std::list<StdString> dimList = SuperClassWriter::getDimensionsList(&fieldId); |
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[825] | 134 | |
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[775] | 135 | realGridDim = SuperClassWriter::isTemporal(fieldId) ? dimSizeMap.size() - 1 : dimSizeMap.size(); |
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[783] | 136 | if (isUnstructuredGrid) ++realGridDim; |
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[775] | 137 | |
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| 138 | if (gridDim != realGridDim) |
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| 139 | ERROR("CNc4DataInput::readFieldAttributes_(CField* field, bool readAttributeValues)", |
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| 140 | << "Field '" << fieldId << "' has incorrect dimension " << std::endl |
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| 141 | << "Verify dimension of grid defined by 'grid_ref' or 'domain_ref'/'axis_ref' and dimension of grid in read file."); |
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| 142 | |
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| 143 | // Remove unlimited dimension from the map, we dont need it anymore |
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[825] | 144 | if (SuperClassWriter::isTemporal(fieldId)) |
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[807] | 145 | { |
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| 146 | dimSizeMap.erase(SuperClassWriter::getUnlimitedDimensionName()); |
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| 147 | dimList.pop_front() ; // assume time dimension is first |
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| 148 | } |
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[825] | 149 | |
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[783] | 150 | std::list<std::pair<StdString, StdSize> > listDimSize; |
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[807] | 151 | /* |
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[783] | 152 | for (std::map<StdString, StdSize>::const_iterator itMap = dimSizeMap.begin(); itMap != dimSizeMap.end(); ++itMap) |
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| 153 | listDimSize.push_front(*itMap); |
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[807] | 154 | */ |
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[1434] | 155 | |
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[1479] | 156 | // if (!SuperClassWriter::isRectilinear(fieldId)) |
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| 157 | if (true) |
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[1430] | 158 | { |
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[1434] | 159 | for (std::list<StdString>::const_iterator it = dimList.begin(); it != dimList.end(); ++it) |
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[1430] | 160 | listDimSize.push_front(*dimSizeMap.find(*it)); |
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| 161 | } |
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[1434] | 162 | else |
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| 163 | { |
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| 164 | std::list<StdString> coords = SuperClassWriter::getCoordinatesIdList(fieldId); |
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| 165 | std::list<StdString>::const_iterator itCoord = coords.begin(); |
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| 166 | for (; itCoord != coords.end(); itCoord++) |
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| 167 | { |
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| 168 | const StdString& coord = *itCoord; |
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| 169 | if (SuperClassWriter::hasVariable(coord) && !SuperClassWriter::isTemporal(coord)) |
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| 170 | { |
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| 171 | std::map<StdString, StdSize> dimsTmp = SuperClassWriter::getDimensions(&coord); |
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| 172 | StdString dimNameTmp = dimsTmp.begin()->first; |
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| 173 | StdSize dimSizeTmp = dimsTmp.begin()->second; |
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| 174 | listDimSize.push_front(make_pair(coord, dimSizeTmp)); |
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| 175 | dimSizeMap.erase(dimNameTmp); |
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| 176 | dimList.remove(dimNameTmp); |
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| 177 | } |
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| 178 | } |
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| 179 | for (std::list<StdString>::const_iterator it = dimList.begin(); it != dimList.end(); ++it) |
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| 180 | listDimSize.push_front(*dimSizeMap.find(*it)); |
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| 181 | } |
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[1430] | 182 | |
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[775] | 183 | // Now process domain and axis |
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[887] | 184 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
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[967] | 185 | int numElement = domainP.size() + axisP.size() + scalarP.size(); |
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[775] | 186 | int elementPosition = 0; |
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[967] | 187 | int idxDomain = 0, idxAxis = 0, idxScalar = 0; |
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[775] | 188 | |
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| 189 | std::pair<std::set<StdString>::iterator,bool> it; |
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| 190 | for (int i = 0; i < numElement; ++i) |
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| 191 | { |
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[887] | 192 | if(2 == axisDomainOrder(i)) |
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[775] | 193 | { |
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| 194 | if (readAttributeValues) |
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| 195 | { |
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| 196 | it = readValueDomains_.insert(domainP[idxDomain]->getId()); |
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[783] | 197 | if (it.second) readDomainAttributeValueFromFile(domainP[idxDomain], listDimSize, elementPosition, fieldId); |
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[775] | 198 | } |
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| 199 | else |
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| 200 | { |
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| 201 | it = readMetaDataDomains_.insert(domainP[idxDomain]->getId()); |
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[783] | 202 | if (it.second) readDomainAttributesFromFile(domainP[idxDomain], listDimSize, elementPosition, fieldId); |
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[775] | 203 | } |
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| 204 | ++idxDomain; |
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[783] | 205 | if (isUnstructuredGrid) ++elementPosition; |
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| 206 | else elementPosition += 2; |
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[775] | 207 | } |
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[887] | 208 | else if (1 == axisDomainOrder(i)) |
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[775] | 209 | { |
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| 210 | if (readAttributeValues) |
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| 211 | { |
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| 212 | it = readValueAxis_.insert(axisP[idxAxis]->getId()); |
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[783] | 213 | if (it.second) readAxisAttributeValueFromFile(axisP[idxAxis], listDimSize, elementPosition, fieldId); |
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[775] | 214 | } |
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| 215 | else |
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| 216 | { |
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| 217 | it = readMetaDataAxis_.insert(axisP[idxAxis]->getId()); |
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[783] | 218 | if (it.second) readAxisAttributesFromFile(axisP[idxAxis], listDimSize, elementPosition, fieldId); |
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[775] | 219 | } |
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| 220 | ++idxAxis; |
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| 221 | ++elementPosition; |
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| 222 | } |
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[967] | 223 | else |
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| 224 | { |
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| 225 | if (readAttributeValues) |
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| 226 | { |
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| 227 | it = readValueScalar_.insert(scalarP[idxScalar]->getId()); |
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| 228 | if (it.second) readScalarAttributeValueFromFile(scalarP[idxScalar], listDimSize, elementPosition, fieldId); |
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| 229 | } |
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| 230 | else |
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| 231 | { |
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| 232 | it = readMetaDataScalar_.insert(scalarP[idxScalar]->getId()); |
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| 233 | if (it.second) readScalarAttributesFromFile(scalarP[idxScalar], listDimSize, elementPosition, fieldId); |
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| 234 | } |
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| 235 | ++idxScalar; |
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| 236 | ++elementPosition; |
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| 237 | } |
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[775] | 238 | } |
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| 239 | } |
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[1622] | 240 | CATCH |
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[775] | 241 | |
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| 242 | /*! |
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| 243 | Read attributes of a domain from a file |
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| 244 | \param [in] domain domain whose attributes are read from the file |
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| 245 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 246 | \param [in] emelentPosition position of domain in grid |
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[782] | 247 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 248 | */ |
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[783] | 249 | void CNc4DataInput::readDomainAttributeValueFromFile(CDomain* domain, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 250 | int elementPosition, const StdString& fieldId) |
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[1622] | 251 | TRY |
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[775] | 252 | { |
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| 253 | // There are some optional attributes of a domain to retrieve from file // + lon lat? |
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[783] | 254 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapNi = dimSizeMap.begin(), itMapNj, |
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| 255 | iteMap = dimSizeMap.end(); |
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[775] | 256 | |
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[783] | 257 | for (int i = 0; i < elementPosition; ++i, ++itMapNi) {} |
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| 258 | itMapNj = itMapNi; ++itMapNj; |
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[775] | 259 | |
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[1158] | 260 | if ((CDomain::type_attr::rectilinear == domain->type)) |
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[775] | 261 | { |
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[1419] | 262 | // Ok, try to read some attributes such as longitude and latitude |
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[825] | 263 | bool hasLat = SuperClassWriter::hasVariable(itMapNj->first); |
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| 264 | if (hasLat) |
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| 265 | { |
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| 266 | domain->latvalue_rectilinear_read_from_file.resize(itMapNj->second); |
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| 267 | std::vector<StdSize> nBeginLat(1, 0), nSizeLat(1, itMapNj->second); |
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| 268 | readFieldVariableValue(domain->latvalue_rectilinear_read_from_file, itMapNj->first, nBeginLat, nSizeLat, true); |
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| 269 | } |
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[775] | 270 | |
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[825] | 271 | bool hasLon = SuperClassWriter::hasVariable(itMapNi->first); |
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| 272 | if (hasLon) |
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| 273 | { |
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| 274 | domain->lonvalue_rectilinear_read_from_file.resize(itMapNi->second); |
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| 275 | std::vector<StdSize> nBeginLon(1, 0), nSizeLon(1, itMapNi->second); |
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| 276 | readFieldVariableValue(domain->lonvalue_rectilinear_read_from_file, itMapNi->first, nBeginLon, nSizeLon, true); |
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[1158] | 277 | } |
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[775] | 278 | } |
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[1158] | 279 | else if ((CDomain::type_attr::curvilinear == domain->type)) |
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[783] | 280 | { |
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[1428] | 281 | // Make sure that if there is no local domain defined on a process, the process still reads just one value. |
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| 282 | int ni, nj, ibegin, jbegin; |
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| 283 | if (domain->ni == 0) |
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| 284 | { |
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| 285 | ni = 1; |
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| 286 | ibegin = 0; |
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| 287 | } |
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| 288 | else |
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| 289 | { |
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| 290 | ni = domain->ni; |
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| 291 | ibegin = domain->ibegin; |
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| 292 | } |
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| 293 | if (domain->nj == 0) |
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| 294 | { |
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| 295 | nj = 1; |
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| 296 | jbegin = 0; |
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| 297 | } |
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| 298 | else |
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| 299 | { |
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| 300 | nj = domain->nj; |
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| 301 | jbegin = domain->jbegin; |
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| 302 | } |
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| 303 | |
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[785] | 304 | std::vector<StdSize> nBeginLatLon(2), nSizeLatLon(2); |
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[1428] | 305 | nBeginLatLon[0] = jbegin; nBeginLatLon[1] = ibegin; |
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| 306 | nSizeLatLon[0] = nj; nSizeLatLon[1] = ni; |
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[783] | 307 | |
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| 308 | StdString latName = this->getLatCoordName(fieldId); |
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[1158] | 309 | if (SuperClassWriter::hasVariable(latName)) |
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[825] | 310 | { |
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[1428] | 311 | domain->latvalue_curvilinear_read_from_file.resize(ni, nj); |
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[1158] | 312 | readFieldVariableValue(domain->latvalue_curvilinear_read_from_file, latName, nBeginLatLon, nSizeLatLon); |
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[825] | 313 | } |
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[783] | 314 | StdString lonName = this->getLonCoordName(fieldId); |
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[1158] | 315 | if (SuperClassWriter::hasVariable(lonName)) |
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[825] | 316 | { |
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[1428] | 317 | domain->lonvalue_curvilinear_read_from_file.resize(ni, nj); |
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[1158] | 318 | readFieldVariableValue(domain->lonvalue_curvilinear_read_from_file, lonName, nBeginLatLon, nSizeLatLon); |
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[825] | 319 | } |
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[783] | 320 | |
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| 321 | StdString boundsLatName = this->getBoundsId(latName); |
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| 322 | StdString boundsLonName = this->getBoundsId(lonName); |
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| 323 | |
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[1447] | 324 | int nbVertex = 4; //this->getNbVertex(fieldId); |
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[1158] | 325 | if (!domain->nvertex.isEmpty() && (domain->nvertex != nbVertex)) |
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| 326 | { |
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| 327 | ERROR("void CNc4DataInput::readDomainAttributeValueFromFile(...)", |
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| 328 | << "The domain " << domain->getDomainOutputName() |
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| 329 | << " has nvertex read from file " << this->filename << " and nvertex provided from model" |
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| 330 | << " are not coherent. They should be the same." << std::endl |
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| 331 | << " nvertex read from file: "<< nbVertex |
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| 332 | << " nvertex from model: "<< domain->nvertex << std::endl); |
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| 333 | } |
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| 334 | |
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| 335 | if (SuperClassWriter::hasVariable(boundsLatName) || SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 336 | domain->nvertex.setValue(nbVertex); |
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[1201] | 337 | |
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[785] | 338 | std::vector<StdSize> nBeginBndsLatLon(3), nSizeBndsLatLon(3); |
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[1428] | 339 | nBeginBndsLatLon[0] = jbegin; nSizeBndsLatLon[0] = nj; |
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| 340 | nBeginBndsLatLon[1] = ibegin; nSizeBndsLatLon[1] = ni; |
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[785] | 341 | nBeginBndsLatLon[2] = 0; nSizeBndsLatLon[2] = nbVertex; |
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[783] | 342 | |
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[1158] | 343 | if (SuperClassWriter::hasVariable(boundsLatName)) |
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[825] | 344 | { |
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[1428] | 345 | domain->bounds_latvalue_curvilinear_read_from_file.resize(nbVertex, ni, nj); |
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[1158] | 346 | readFieldVariableValue(domain->bounds_latvalue_curvilinear_read_from_file, boundsLatName, nBeginBndsLatLon, nSizeBndsLatLon); |
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[825] | 347 | |
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| 348 | } |
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[1158] | 349 | if (SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 350 | { |
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[1428] | 351 | domain->bounds_lonvalue_curvilinear_read_from_file.resize(nbVertex, ni, nj); |
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[1158] | 352 | readFieldVariableValue(domain->bounds_lonvalue_curvilinear_read_from_file, boundsLonName, nBeginBndsLatLon, nSizeBndsLatLon); |
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| 353 | } |
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[783] | 354 | } |
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[825] | 355 | else if ((CDomain::type_attr::unstructured == domain->type))// || (this->isUnstructured(fieldId))) |
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[775] | 356 | { |
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[1428] | 357 | // Make sure that if there is no local domain defined on a process, the process still reads just one value. |
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| 358 | int ni, ibegin; |
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| 359 | if (domain->ni == 0) |
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| 360 | { |
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| 361 | ni = 1; |
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| 362 | ibegin = 0; |
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| 363 | } |
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| 364 | else |
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| 365 | { |
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| 366 | ni = domain->ni; |
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| 367 | ibegin = domain->ibegin; |
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| 368 | } |
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| 369 | |
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[785] | 370 | std::vector<StdSize> nBeginLatLon(1,0), nSizeLatLon(1,0); |
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[1428] | 371 | nBeginLatLon[0] = ibegin; |
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| 372 | nSizeLatLon[0] = ni; |
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[785] | 373 | |
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[782] | 374 | StdString latName = this->getLatCoordName(fieldId); |
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[1158] | 375 | if (SuperClassWriter::hasVariable(latName)) |
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[825] | 376 | { |
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[1428] | 377 | domain->latvalue_unstructured_read_from_file.resize(ni); |
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[1158] | 378 | readFieldVariableValue(domain->latvalue_unstructured_read_from_file, latName, nBeginLatLon, nSizeLatLon); |
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[825] | 379 | } |
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[785] | 380 | |
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[782] | 381 | StdString lonName = this->getLonCoordName(fieldId); |
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[825] | 382 | if (SuperClassWriter::hasVariable(lonName)) //(0 != lonName.compare("")) |
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| 383 | { |
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[1428] | 384 | domain->lonvalue_unstructured_read_from_file.resize(ni); |
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[1158] | 385 | readFieldVariableValue(domain->lonvalue_unstructured_read_from_file, lonName, nBeginLatLon, nSizeLatLon); |
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[825] | 386 | } |
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[782] | 387 | |
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| 388 | StdString boundsLatName = this->getBoundsId(latName); |
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| 389 | StdString boundsLonName = this->getBoundsId(lonName); |
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| 390 | |
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[1486] | 391 | if (ugridConvention && domain->nvertex.isEmpty()) |
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| 392 | { |
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| 393 | ERROR("void CNc4DataInput::readDomainAttributeValueFromFile(...)", |
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| 394 | << " Attribute nvertex must be specified for domain " << domain->getDomainOutputName() |
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| 395 | << " read from UGRID file " << this->filename << " ."<< std::endl); |
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| 396 | } |
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| 397 | // int nbVertex = this->getNbVertex(fieldId); |
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| 398 | int nbVertex = (ugridConvention) ? domain->nvertex : this->getNbVertex(fieldId); |
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[1158] | 399 | if (!domain->nvertex.isEmpty() && (domain->nvertex != nbVertex)) |
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| 400 | { |
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| 401 | ERROR("void CNc4DataInput::readDomainAttributeValueFromFile(...)", |
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| 402 | << "The domain " << domain->getDomainOutputName() |
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| 403 | << " has nvertex read from file " << this->filename << " and nvertex provided from model" |
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| 404 | << " are not coherent. They should be the same." << std::endl |
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| 405 | << " nvertex read from file: "<< nbVertex |
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| 406 | << " nvertex from model: "<< domain->nvertex << std::endl); |
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| 407 | } |
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| 408 | |
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| 409 | if (SuperClassWriter::hasVariable(boundsLatName) || SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 410 | domain->nvertex.setValue(nbVertex); |
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| 411 | |
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[785] | 412 | std::vector<StdSize> nBeginBndsLatLon(2), nSizeBndsLatLon(2); |
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[1428] | 413 | nBeginBndsLatLon[0] = ibegin; nSizeBndsLatLon[0] = ni; |
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[1413] | 414 | nBeginBndsLatLon[1] = 0; nSizeBndsLatLon[1] = nbVertex; |
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[782] | 415 | |
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[1413] | 416 | if (SuperClassWriter::hasVariable(boundsLatName)) |
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[825] | 417 | { |
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[1158] | 418 | domain->bounds_latvalue_unstructured_read_from_file.resize(nSizeBndsLatLon[1], nSizeBndsLatLon[0]); |
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| 419 | readFieldVariableValue(domain->bounds_latvalue_unstructured_read_from_file, boundsLatName, nBeginBndsLatLon, nSizeBndsLatLon); |
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[825] | 420 | } |
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[785] | 421 | |
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[1158] | 422 | if (SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 423 | { |
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[1158] | 424 | domain->bounds_lonvalue_unstructured_read_from_file.resize(nSizeBndsLatLon[1], nSizeBndsLatLon[0]); |
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| 425 | readFieldVariableValue(domain->bounds_lonvalue_unstructured_read_from_file, boundsLonName, nBeginBndsLatLon, nSizeBndsLatLon); |
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| 426 | } |
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[775] | 427 | } |
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[1158] | 428 | domain->fillInLonLat(); |
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[775] | 429 | } |
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[1622] | 430 | CATCH |
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[775] | 431 | |
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| 432 | /*! |
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[782] | 433 | Read attribute value of a domain from a file |
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[775] | 434 | \param [in] domain domain whose attributes are read from the file |
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| 435 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 436 | \param [in] emelentPosition position of domain in grid |
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[782] | 437 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 438 | */ |
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[783] | 439 | void CNc4DataInput::readDomainAttributesFromFile(CDomain* domain, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 440 | int elementPosition, const StdString& fieldId) |
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[1622] | 441 | TRY |
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[775] | 442 | { |
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| 443 | // There are some mandatory attributes of a domain to retrieve from file |
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| 444 | // + ni_glo, nj_glo |
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[783] | 445 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapNi = dimSizeMap.begin(), itMapNj, |
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| 446 | iteMap = dimSizeMap.end(); |
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| 447 | for (int i = 0; i < elementPosition; ++i, ++itMapNi) {} |
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| 448 | itMapNj = itMapNi; ++itMapNj; |
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[775] | 449 | |
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[1479] | 450 | if (CDomain::type_attr::rectilinear == domain->type || CDomain::type_attr::curvilinear == domain->type || |
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| 451 | this->isRectilinear(fieldId) || this->isCurvilinear(fieldId)) |
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[775] | 452 | { |
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[1158] | 453 | if (!domain->nj_glo.isEmpty() && (domain->nj_glo != itMapNj->second)) |
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| 454 | { |
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| 455 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 456 | << "The domain " << domain->getDomainOutputName() |
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| 457 | << " has nj_glo read from file " << this->filename << " and nj_glo provided from model" |
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| 458 | << " are not coherent. They should be the same." << std::endl |
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| 459 | << " nj_glo read from file: "<< itMapNj->second |
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| 460 | << " nj_glo from model: "<< domain->nj_glo << std::endl); |
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| 461 | } |
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[775] | 462 | domain->nj_glo.setValue(itMapNj->second); |
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[1158] | 463 | |
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| 464 | if (!domain->ni_glo.isEmpty() && (domain->ni_glo != itMapNi->second)) |
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| 465 | { |
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| 466 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 467 | << "The domain " << domain->getDomainOutputName() |
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| 468 | << " has ni_glo read from file " << this->filename << " and ni_glo provided from model" |
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| 469 | << " are not coherent. They should be the same." << std::endl |
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| 470 | << " ni_glo read from file: "<< itMapNi->second |
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| 471 | << " ni_glo from model: "<< domain->ni_glo << std::endl); |
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| 472 | } |
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[783] | 473 | domain->ni_glo.setValue(itMapNi->second); |
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[775] | 474 | } |
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[1479] | 475 | else if (CDomain::type_attr::unstructured == domain->type|| this->isUnstructured(fieldId)) |
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[775] | 476 | { |
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[783] | 477 | domain->nj_glo.setValue(1); |
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[1158] | 478 | |
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| 479 | if (!domain->ni_glo.isEmpty() && (domain->ni_glo != itMapNi->second)) |
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| 480 | { |
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| 481 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 482 | << "The domain " << domain->getDomainOutputName() |
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| 483 | << " has ni_glo read from file " << this->filename << " and ni_glo provided from model" |
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| 484 | << " are not coherent. They should be the same." << std::endl |
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| 485 | << " ni_glo read from file: "<< itMapNi->second |
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| 486 | << " ni_glo from model: "<< domain->ni_glo << std::endl); |
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| 487 | } |
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[783] | 488 | domain->ni_glo.setValue(itMapNi->second); |
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[775] | 489 | } |
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[1582] | 490 | |
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| 491 | // determine if coordinates values are present in file |
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| 492 | if ((CDomain::type_attr::rectilinear == domain->type)) |
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| 493 | { |
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| 494 | // Ok, try to read some attributes such as longitude and latitude |
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| 495 | domain->hasLatInReadFile_ = SuperClassWriter::hasVariable(itMapNj->first); |
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| 496 | domain->hasLonInReadFile_ = SuperClassWriter::hasVariable(itMapNi->first); |
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| 497 | } |
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| 498 | else if ((CDomain::type_attr::curvilinear == domain->type) || (CDomain::type_attr::unstructured == domain->type) ) |
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| 499 | { |
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| 500 | StdString latName = this->getLatCoordName(fieldId); |
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| 501 | domain->hasLatInReadFile_ = SuperClassWriter::hasVariable(latName) ; |
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| 502 | StdString lonName = this->getLonCoordName(fieldId); |
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| 503 | domain->hasLonInReadFile_ = SuperClassWriter::hasVariable(lonName) ; |
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| 504 | StdString boundsLatName = this->getBoundsId(latName); |
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| 505 | domain->hasBoundsLatInReadFile_ = SuperClassWriter::hasVariable(boundsLatName) ; |
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| 506 | StdString boundsLonName = this->getBoundsId(lonName); |
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| 507 | domain->hasBoundsLonInReadFile_ = SuperClassWriter::hasVariable(boundsLonName) ; |
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| 508 | } |
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[775] | 509 | } |
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[1622] | 510 | CATCH |
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[775] | 511 | |
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| 512 | /*! |
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| 513 | Read attributes of an axis from a file |
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| 514 | \param [in] axis axis whose attributes are read from the file |
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| 515 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 516 | \param [in] emelentPosition position of axis in grid |
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[782] | 517 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 518 | */ |
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[783] | 519 | void CNc4DataInput::readAxisAttributesFromFile(CAxis* axis, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 520 | int elementPosition, const StdString& fieldId) |
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[1622] | 521 | TRY |
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[775] | 522 | { |
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[783] | 523 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapN = dimSizeMap.begin(), |
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| 524 | iteMap = dimSizeMap.end(); |
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[775] | 525 | for (int i = 0; i < elementPosition; ++i, ++itMapN) {} |
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[1158] | 526 | |
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| 527 | if (!axis->n_glo.isEmpty() && (axis->n_glo != itMapN->second)) |
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| 528 | { |
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| 529 | ERROR("void CNc4DataInput::readAxisAttributesFromFile(...)", |
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| 530 | << "The axis " << axis->getAxisOutputName() |
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| 531 | << " has n_glo read from file " << this->filename << " and n_glo provided from model" |
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| 532 | << " are not coherent. They should be the same." << std::endl |
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| 533 | << " n_glo read from file: "<< itMapN->second |
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| 534 | << " n_glo from model: "<< axis->n_glo << std::endl); |
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| 535 | } |
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[775] | 536 | axis->n_glo.setValue(itMapN->second); |
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| 537 | } |
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[1622] | 538 | CATCH |
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[775] | 539 | |
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| 540 | /*! |
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[782] | 541 | Read attribute value of an axis from a file |
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[775] | 542 | \param [in] axis axis whose attributes are read from the file |
---|
| 543 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
---|
| 544 | \param [in] emelentPosition position of axis in grid |
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[782] | 545 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 546 | */ |
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[783] | 547 | void CNc4DataInput::readAxisAttributeValueFromFile(CAxis* axis, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 548 | int elementPosition, const StdString& fieldId) |
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[1622] | 549 | TRY |
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[775] | 550 | { |
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[783] | 551 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapN = dimSizeMap.begin(), |
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| 552 | iteMap = dimSizeMap.end(); |
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[775] | 553 | for (int i = 0; i < elementPosition; ++i, ++itMapN) {} |
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| 554 | |
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| 555 | { // Read axis value |
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[1310] | 556 | bool hasValue = SuperClassWriter::hasVariable(itMapN->first); |
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| 557 | if (hasValue) |
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| 558 | { |
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| 559 | std::vector<StdSize> nBegin(1, 0), nSize(1, itMapN->second); |
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| 560 | CArray<double,1> readAxisValue(itMapN->second); |
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| 561 | readFieldVariableValue(readAxisValue, itMapN->first, nBegin, nSize, true); |
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| 562 | int begin = 0, n = itMapN->second; |
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| 563 | if (!axis->begin.isEmpty()) begin = axis->begin.getValue(); |
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| 564 | if (!axis->n.isEmpty()) n = axis->n.getValue(); |
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| 565 | axis->value.resize(n); |
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| 566 | for (int i = 0; i < n; ++i) axis->value(i) = readAxisValue(begin + i); |
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| 567 | } |
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[775] | 568 | } |
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| 569 | } |
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[1622] | 570 | CATCH |
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[775] | 571 | |
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[967] | 572 | /*! |
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| 573 | Read attributes of a scalar from a file |
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| 574 | \param [in] scalar scalar whose attributes are read from the file |
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| 575 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 576 | \param [in] emelentPosition position of scalar in grid |
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| 577 | \param [in] fieldId id (or name) associated with the grid |
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| 578 | */ |
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| 579 | void CNc4DataInput::readScalarAttributesFromFile(CScalar* scalar, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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| 580 | int elementPosition, const StdString& fieldId) |
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| 581 | { |
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[1158] | 582 | /*Nothing to do */ |
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[967] | 583 | } |
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| 584 | |
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| 585 | /*! |
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| 586 | Read attribute value of an axis from a file |
---|
| 587 | \param [in] axis axis whose attributes are read from the file |
---|
| 588 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
---|
| 589 | \param [in] emelentPosition position of axis in grid |
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| 590 | \param [in] fieldId id (or name) associated with the grid |
---|
| 591 | */ |
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| 592 | void CNc4DataInput::readScalarAttributeValueFromFile(CScalar* scalar, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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| 593 | int elementPosition, const StdString& fieldId) |
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| 594 | { |
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[1158] | 595 | /*Nothing to do */ |
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[967] | 596 | } |
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| 597 | |
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[599] | 598 | void CNc4DataInput::closeFile_(void) |
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[1622] | 599 | TRY |
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[599] | 600 | { |
---|
| 601 | SuperClassWriter::close(); |
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| 602 | } |
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[1622] | 603 | CATCH |
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[335] | 604 | } // namespace xios |
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