1 | #ifndef __XIOS_NC4_DATA_INPUT__ |
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2 | #define __XIOS_NC4_DATA_INPUT__ |
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3 | |
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4 | /// XIOS headers /// |
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5 | #include "mpi_std.hpp" |
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6 | #include "xios_spl.hpp" |
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7 | #include "data_input.hpp" |
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8 | #include "inetcdf4.hpp" |
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9 | |
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10 | namespace xios |
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11 | { |
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12 | class CDomain; |
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13 | class CAxis; |
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14 | class CScalar; |
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15 | |
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16 | class CNc4DataInput |
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17 | : protected CINetCDF4 |
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18 | , public virtual CDataInput |
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19 | { |
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20 | public: |
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21 | /// Type definitions /// |
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22 | typedef CINetCDF4 SuperClassWriter; |
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23 | typedef CDataInput SuperClass; |
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24 | |
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25 | /// Constructors /// |
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26 | CNc4DataInput(const StdString& filename, ep_lib::MPI_Comm comm_file, bool multifile, bool isCollective = true, |
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27 | bool readMetaDataPar = false, bool ugridConvention = false, const StdString& timeCounterName = "time_counter"); |
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28 | CNc4DataInput(const CNc4DataInput& dataInput); // Not implemented. |
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29 | CNc4DataInput(const CNc4DataInput* const dataInput); // Not implemented. |
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30 | |
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31 | /// Destructor /// |
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32 | virtual ~CNc4DataInput(void); |
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33 | |
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34 | /// Getters /// |
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35 | const StdString& getFileName(void) const; |
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36 | |
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37 | protected: |
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38 | // Read methods |
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39 | virtual StdSize getFieldNbRecords_(CField* field); |
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40 | virtual void readFieldData_(CField* field); |
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41 | virtual void readFieldAttributes_(CField* field, bool readAttributeValues); |
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42 | virtual void closeFile_(void); |
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43 | |
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44 | private: |
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45 | void readDomainAttributesFromFile(CDomain* domain, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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46 | int elementPosition, const StdString& fieldId); |
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47 | void readDomainAttributeValueFromFile(CDomain* domain, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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48 | int elementPosition, const StdString& fieldId); |
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49 | |
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50 | void readAxisAttributesFromFile(CAxis* axis, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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51 | int elementPosition, const StdString& fieldId); |
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52 | void readAxisAttributeValueFromFile(CAxis* axis, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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53 | int elementPosition, const StdString& fieldId); |
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54 | |
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55 | void readScalarAttributesFromFile(CScalar* scalar, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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56 | int elementPosition, const StdString& fieldId); |
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57 | void readScalarAttributeValueFromFile(CScalar* scalar, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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58 | int elementPosition, const StdString& fieldId); |
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59 | |
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60 | template <typename T, int Ndim> |
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61 | void readFieldVariableValue(CArray<T, Ndim>& var, const StdString& varId, |
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62 | const std::vector<StdSize>& nBegin, |
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63 | const std::vector<StdSize>& nSize, |
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64 | bool forceIndependent = false); |
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65 | |
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66 | private: |
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67 | std::set<StdString> readMetaDataDomains_, readValueDomains_; |
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68 | std::set<StdString> readMetaDataAxis_, readValueAxis_; |
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69 | std::set<StdString> readMetaDataScalar_, readValueScalar_; |
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70 | |
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71 | private: |
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72 | /// Private attributes /// |
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73 | ep_lib::MPI_Comm comm_file; |
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74 | const StdString filename; |
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75 | bool isCollective; |
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76 | bool ugridConvention; |
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77 | }; // class CNc4DataInput |
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78 | |
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79 | template <typename T, int Ndim> |
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80 | void CNc4DataInput::readFieldVariableValue(CArray<T,Ndim>& var, const StdString& varId, |
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81 | const std::vector<StdSize>& nBegin, |
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82 | const std::vector<StdSize>& nSize, |
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83 | bool forceIndependent) |
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84 | { |
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85 | if (SuperClass::type==MULTI_FILE || !isCollective) return; |
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86 | |
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87 | bool openCollective = isCollective; |
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88 | if (forceIndependent) openCollective = !isCollective; |
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89 | switch (SuperClass::type) |
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90 | { |
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91 | case MULTI_FILE: |
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92 | ERROR("CINetCDF4::readFieldVariableValue(...)", |
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93 | << "Only support attributes reading with one_file mode"); |
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94 | break; |
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95 | case ONE_FILE: |
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96 | { |
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97 | SuperClassWriter::getData(var, varId, openCollective, 0, &nBegin, &nSize); |
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98 | break; |
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99 | } |
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100 | } |
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101 | } |
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102 | } // namespace xios |
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103 | |
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104 | #endif //__XIOS_NC4_DATA_INPUT__ |
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