[1601] | 1 | #include "mpi.hpp" |
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[644] | 2 | #include "spatial_transform_filter.hpp" |
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| 3 | #include "grid_transformation.hpp" |
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| 4 | #include "context.hpp" |
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| 5 | #include "context_client.hpp" |
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[1412] | 6 | #include "timer.hpp" |
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[1646] | 7 | #ifdef _usingEP |
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[1601] | 8 | using namespace ep_lib; |
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[1646] | 9 | #endif |
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[1668] | 10 | #include "workflow_graph.hpp" |
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[1680] | 11 | #include "file.hpp" |
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[644] | 12 | namespace xios |
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| 13 | { |
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[1689] | 14 | CSpatialTransformFilter::CSpatialTransformFilter(CGarbageCollector& gc, CSpatialTransformFilterEngine* engine, double outputValue, size_t inputSlotsCount) |
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[1679] | 15 | : CFilter(gc, inputSlotsCount, engine), outputDefaultValue(outputValue) |
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[644] | 16 | { /* Nothing to do */ } |
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| 17 | |
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[1542] | 18 | std::pair<std::shared_ptr<CSpatialTransformFilter>, std::shared_ptr<CSpatialTransformFilter> > |
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[1679] | 19 | CSpatialTransformFilter::buildFilterGraph(CGarbageCollector& gc, CGrid* srcGrid, CGrid* destGrid, bool hasMissingValue, double missingValue) |
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[644] | 20 | { |
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| 21 | if (!srcGrid || !destGrid) |
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[1542] | 22 | ERROR("std::pair<std::shared_ptr<CSpatialTransformFilter>, std::shared_ptr<CSpatialTransformFilter> >" |
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[644] | 23 | "buildFilterGraph(CGarbageCollector& gc, CGrid* srcGrid, CGrid* destGrid)", |
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| 24 | "Impossible to build the filter graph if either the source or the destination grid are null."); |
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| 25 | |
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[1542] | 26 | std::shared_ptr<CSpatialTransformFilter> firstFilter, lastFilter; |
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[790] | 27 | // Note that this loop goes from the last transformation to the first transformation |
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| 28 | do |
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| 29 | { |
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| 30 | CGridTransformation* gridTransformation = destGrid->getTransformations(); |
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| 31 | CSpatialTransformFilterEngine* engine = CSpatialTransformFilterEngine::get(destGrid->getTransformations()); |
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[827] | 32 | const std::vector<StdString>& auxInputs = gridTransformation->getAuxInputs(); |
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| 33 | size_t inputCount = 1 + (auxInputs.empty() ? 0 : auxInputs.size()); |
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[1158] | 34 | double defaultValue = (hasMissingValue) ? std::numeric_limits<double>::quiet_NaN() : 0.0; |
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[644] | 35 | |
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[1275] | 36 | |
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| 37 | const CGridTransformationSelector::ListAlgoType& algoList = gridTransformation->getAlgoList() ; |
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| 38 | CGridTransformationSelector::ListAlgoType::const_iterator it ; |
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| 39 | |
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| 40 | bool isSpatialTemporal=false ; |
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| 41 | for (it=algoList.begin();it!=algoList.end();++it) if (it->second.first == TRANS_TEMPORAL_SPLITTING) isSpatialTemporal=true ; |
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| 42 | |
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[1542] | 43 | std::shared_ptr<CSpatialTransformFilter> filter ; |
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[1689] | 44 | if( isSpatialTemporal) filter = std::shared_ptr<CSpatialTransformFilter>(new CSpatialTemporalFilter(gc, engine, gridTransformation, defaultValue, inputCount)); |
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| 45 | else filter = std::shared_ptr<CSpatialTransformFilter>(new CSpatialTransformFilter(gc, engine, defaultValue, inputCount)); |
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[1275] | 46 | |
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| 47 | |
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[790] | 48 | if (!lastFilter) |
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| 49 | lastFilter = filter; |
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| 50 | else |
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| 51 | filter->connectOutput(firstFilter, 0); |
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| 52 | |
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| 53 | firstFilter = filter; |
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[827] | 54 | for (size_t idx = 0; idx < auxInputs.size(); ++idx) |
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| 55 | { |
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| 56 | CField* fieldAuxInput = CField::get(auxInputs[idx]); |
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| 57 | fieldAuxInput->buildFilterGraph(gc, false); |
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| 58 | fieldAuxInput->getInstantDataFilter()->connectOutput(firstFilter,idx+1); |
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| 59 | } |
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| 60 | |
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[790] | 61 | destGrid = gridTransformation->getGridSource(); |
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| 62 | } |
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| 63 | while (destGrid != srcGrid); |
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| 64 | |
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| 65 | return std::make_pair(firstFilter, lastFilter); |
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[644] | 66 | } |
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| 67 | |
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[873] | 68 | void CSpatialTransformFilter::onInputReady(std::vector<CDataPacketPtr> data) |
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| 69 | { |
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| 70 | CSpatialTransformFilterEngine* spaceFilter = static_cast<CSpatialTransformFilterEngine*>(engine); |
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[1685] | 71 | CDataPacketPtr outputPacket = spaceFilter->applyFilter(data, outputDefaultValue, this->tag, this->start_graph, this->end_graph, this->field); |
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[873] | 72 | if (outputPacket) |
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[1021] | 73 | onOutputReady(outputPacket); |
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[873] | 74 | } |
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| 75 | |
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[1689] | 76 | CSpatialTemporalFilter::CSpatialTemporalFilter(CGarbageCollector& gc, CSpatialTransformFilterEngine* engine, CGridTransformation* gridTransformation, double outputValue, size_t inputSlotsCount) |
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[1679] | 77 | : CSpatialTransformFilter(gc, engine, outputValue, inputSlotsCount), record(0) |
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[1275] | 78 | { |
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| 79 | const CGridTransformationSelector::ListAlgoType& algoList = gridTransformation->getAlgoList() ; |
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| 80 | CGridTransformationSelector::ListAlgoType::const_iterator it ; |
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| 81 | |
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| 82 | int pos ; |
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| 83 | for (it=algoList.begin();it!=algoList.end();++it) |
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| 84 | if (it->second.first == TRANS_TEMPORAL_SPLITTING) |
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| 85 | { |
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| 86 | pos=it->first ; |
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| 87 | if (pos < algoList.size()-1) |
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| 88 | ERROR("SpatialTemporalFilter::CSpatialTemporalFilter(CGarbageCollector& gc, CSpatialTransformFilterEngine* engine, CGridTransformation* gridTransformation, double outputValue, size_t inputSlotsCount))", |
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| 89 | "temporal splitting operation must be the last of whole transformation on same grid") ; |
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| 90 | } |
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| 91 | |
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| 92 | CGrid* grid=gridTransformation->getGridDestination() ; |
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| 93 | |
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| 94 | CAxis* axis = grid->getAxis(gridTransformation->getElementPositionInGridDst2AxisPosition().find(pos)->second) ; |
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| 95 | |
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| 96 | nrecords = axis->index.numElements() ; |
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| 97 | } |
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| 98 | |
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| 99 | |
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| 100 | void CSpatialTemporalFilter::onInputReady(std::vector<CDataPacketPtr> data) |
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| 101 | { |
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| 102 | CSpatialTransformFilterEngine* spaceFilter = static_cast<CSpatialTransformFilterEngine*>(engine); |
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[1685] | 103 | CDataPacketPtr outputPacket = spaceFilter->applyFilter(data, outputDefaultValue, this->tag, this->start_graph, this->end_graph, this->field); |
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[1275] | 104 | |
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| 105 | if (outputPacket) |
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| 106 | { |
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| 107 | size_t nelements=outputPacket->data.numElements() ; |
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| 108 | if (!tmpData.numElements()) |
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| 109 | { |
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| 110 | tmpData.resize(nelements); |
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| 111 | tmpData=outputDefaultValue ; |
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| 112 | } |
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| 113 | |
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| 114 | nelements/=nrecords ; |
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| 115 | size_t offset=nelements*record ; |
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| 116 | for(size_t i=0;i<nelements;++i) tmpData(i+offset) = outputPacket->data(i) ; |
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| 117 | |
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| 118 | record ++ ; |
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| 119 | if (record==nrecords) |
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| 120 | { |
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| 121 | record=0 ; |
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| 122 | CDataPacketPtr packet = CDataPacketPtr(new CDataPacket); |
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| 123 | packet->date = data[0]->date; |
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| 124 | packet->timestamp = data[0]->timestamp; |
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| 125 | packet->status = data[0]->status; |
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| 126 | packet->data.resize(tmpData.numElements()); |
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| 127 | packet->data = tmpData; |
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[1679] | 128 | packet->field = this->field; |
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[1275] | 129 | onOutputReady(packet); |
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| 130 | tmpData.resize(0) ; |
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| 131 | } |
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| 132 | } |
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| 133 | } |
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| 134 | |
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| 135 | |
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[644] | 136 | CSpatialTransformFilterEngine::CSpatialTransformFilterEngine(CGridTransformation* gridTransformation) |
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| 137 | : gridTransformation(gridTransformation) |
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| 138 | { |
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| 139 | if (!gridTransformation) |
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| 140 | ERROR("CSpatialTransformFilterEngine::CSpatialTransformFilterEngine(CGridTransformation* gridTransformation)", |
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| 141 | "Impossible to construct a spatial transform filter engine without a valid grid transformation."); |
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| 142 | } |
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| 143 | |
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[1601] | 144 | std::map<CGridTransformation*, std::shared_ptr<CSpatialTransformFilterEngine> > *CSpatialTransformFilterEngine::engines_ptr = 0; |
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[644] | 145 | |
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| 146 | CSpatialTransformFilterEngine* CSpatialTransformFilterEngine::get(CGridTransformation* gridTransformation) |
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| 147 | { |
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| 148 | if (!gridTransformation) |
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| 149 | ERROR("CSpatialTransformFilterEngine& CSpatialTransformFilterEngine::get(CGridTransformation* gridTransformation)", |
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| 150 | "Impossible to get the requested engine, the grid transformation is invalid."); |
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[1601] | 151 | if(engines_ptr == NULL) engines_ptr = new std::map<CGridTransformation*, std::shared_ptr<CSpatialTransformFilterEngine> >; |
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[644] | 152 | |
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[1601] | 153 | std::map<CGridTransformation*, std::shared_ptr<CSpatialTransformFilterEngine> >::iterator it = engines_ptr->find(gridTransformation); |
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| 154 | if (it == engines_ptr->end()) |
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[644] | 155 | { |
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[1542] | 156 | std::shared_ptr<CSpatialTransformFilterEngine> engine(new CSpatialTransformFilterEngine(gridTransformation)); |
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[1601] | 157 | it = engines_ptr->insert(std::make_pair(gridTransformation, engine)).first; |
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[644] | 158 | } |
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| 159 | |
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| 160 | return it->second.get(); |
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| 161 | } |
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| 162 | |
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| 163 | CDataPacketPtr CSpatialTransformFilterEngine::apply(std::vector<CDataPacketPtr> data) |
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| 164 | { |
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[873] | 165 | /* Nothing to do */ |
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| 166 | } |
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| 167 | |
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[1685] | 168 | bool CSpatialTransformFilterEngine::buildGraph(std::vector<CDataPacketPtr> data, int tag, Time start_graph, Time end_graph, CField *field) |
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[873] | 169 | { |
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[1679] | 170 | bool building_graph = tag ? data[0]->timestamp >= start_graph && data[0]->timestamp <= end_graph : false; |
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| 171 | if(building_graph) |
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[1677] | 172 | { |
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| 173 | this->filterID = InvalidableObject::filterIdGenerator++; |
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[1680] | 174 | int edgeID = InvalidableObject::edgeIdGenerator++; |
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[1677] | 175 | |
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[1680] | 176 | CWorkflowGraph::allocNodeEdge(); |
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[1677] | 177 | |
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[1680] | 178 | CWorkflowGraph::addNode(this->filterID, "Spatial Transform Filter", 4, 1, 1, data[0]); |
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[1681] | 179 | (*CWorkflowGraph::mapFilters_ptr_with_info)[this->filterID].distance = data[0]->distance+1; |
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| 180 | (*CWorkflowGraph::mapFilters_ptr_with_info)[this->filterID].attributes = field->record4graphXiosAttributes(); |
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| 181 | if(field->file) (*CWorkflowGraph::mapFilters_ptr_with_info)[this->filterID].attributes += "</br>file attributes : </br>" +field->file->record4graphXiosAttributes(); |
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[1677] | 182 | |
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| 183 | |
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[1679] | 184 | if(CWorkflowGraph::build_begin) |
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| 185 | { |
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| 186 | CWorkflowGraph::addEdge(edgeID, this->filterID, data[0]); |
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| 187 | |
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| 188 | (*CWorkflowGraph::mapFilters_ptr_with_info)[data[0]->src_filterID].filter_filled = 0; |
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| 189 | } |
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| 190 | else CWorkflowGraph::build_begin = true; |
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[1677] | 191 | } |
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| 192 | |
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[1681] | 193 | return building_graph; |
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| 194 | } |
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[1677] | 195 | |
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[1685] | 196 | CDataPacketPtr CSpatialTransformFilterEngine::applyFilter(std::vector<CDataPacketPtr> data, double defaultValue, int tag, Time start_graph, Time end_graph, CField *field) |
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[1681] | 197 | { |
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| 198 | |
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[1685] | 199 | bool BG = buildGraph(data, tag, start_graph, end_graph, field); |
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[1681] | 200 | |
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[644] | 201 | CDataPacketPtr packet(new CDataPacket); |
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| 202 | packet->date = data[0]->date; |
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| 203 | packet->timestamp = data[0]->timestamp; |
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| 204 | packet->status = data[0]->status; |
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| 205 | |
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| 206 | if (packet->status == CDataPacket::NO_ERROR) |
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| 207 | { |
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[827] | 208 | if (1 < data.size()) // Dynamical transformations |
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| 209 | { |
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| 210 | std::vector<CArray<double,1>* > dataAuxInputs(data.size()-1); |
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| 211 | for (size_t idx = 0; idx < dataAuxInputs.size(); ++idx) dataAuxInputs[idx] = &(data[idx+1]->data); |
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[832] | 212 | gridTransformation->computeAll(dataAuxInputs, packet->timestamp); |
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[827] | 213 | } |
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[644] | 214 | packet->data.resize(gridTransformation->getGridDestination()->storeIndex_client.numElements()); |
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[1158] | 215 | if (0 != packet->data.numElements()) |
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| 216 | (packet->data)(0) = defaultValue; |
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[1681] | 217 | if(BG) apply(data[0]->data, packet->data, this->filterID); |
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[1680] | 218 | else apply(data[0]->data, packet->data); |
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[644] | 219 | } |
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| 220 | |
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[1681] | 221 | if(BG) packet->src_filterID=this->filterID; |
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| 222 | if(BG) packet->distance=data[0]->distance+1; |
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[1679] | 223 | packet->field = field; |
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[1677] | 224 | |
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[644] | 225 | return packet; |
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| 226 | } |
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| 227 | |
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[1679] | 228 | void CSpatialTransformFilterEngine::apply(const CArray<double, 1>& dataSrc, CArray<double,1>& dataDest, int filterID) |
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[644] | 229 | { |
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[1414] | 230 | CTimer::get("CSpatialTransformFilterEngine::apply").resume(); |
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| 231 | |
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[644] | 232 | CContextClient* client = CContext::getCurrent()->client; |
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[1646] | 233 | int rank; |
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| 234 | MPI_Comm_rank (client->intraComm, &rank); |
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[644] | 235 | |
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[873] | 236 | // Get default value for output data |
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[1158] | 237 | bool ignoreMissingValue = false; |
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| 238 | double defaultValue = std::numeric_limits<double>::quiet_NaN(); |
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[1474] | 239 | if (0 != dataDest.numElements()) ignoreMissingValue = NumTraits<double>::isNan(dataDest(0)); |
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[873] | 240 | |
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[841] | 241 | const std::list<CGridTransformation::SendingIndexGridSourceMap>& listLocalIndexSend = gridTransformation->getLocalIndexToSendFromGridSource(); |
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| 242 | const std::list<CGridTransformation::RecvIndexGridDestinationMap>& listLocalIndexToReceive = gridTransformation->getLocalIndexToReceiveOnGridDest(); |
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| 243 | const std::list<size_t>& listNbLocalIndexToReceive = gridTransformation->getNbLocalIndexToReceiveOnGridDest(); |
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[888] | 244 | const std::vector<CGenericAlgorithmTransformation*>& listAlgos = gridTransformation->getAlgos(); |
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[644] | 245 | |
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[841] | 246 | CArray<double,1> dataCurrentDest(dataSrc.copy()); |
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[644] | 247 | |
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[841] | 248 | std::list<CGridTransformation::SendingIndexGridSourceMap>::const_iterator itListSend = listLocalIndexSend.begin(), |
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| 249 | iteListSend = listLocalIndexSend.end(); |
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| 250 | std::list<CGridTransformation::RecvIndexGridDestinationMap>::const_iterator itListRecv = listLocalIndexToReceive.begin(); |
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| 251 | std::list<size_t>::const_iterator itNbListRecv = listNbLocalIndexToReceive.begin(); |
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[888] | 252 | std::vector<CGenericAlgorithmTransformation*>::const_iterator itAlgo = listAlgos.begin(); |
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[841] | 253 | |
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[1646] | 254 | for (; itListSend != iteListSend; ++itListSend, ++itListRecv, ++itNbListRecv, ++itAlgo) |
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[709] | 255 | { |
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[841] | 256 | CArray<double,1> dataCurrentSrc(dataCurrentDest); |
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| 257 | const CGridTransformation::SendingIndexGridSourceMap& localIndexToSend = *itListSend; |
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[709] | 258 | |
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[841] | 259 | // Sending data from field sources to do transformations |
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| 260 | std::map<int, CArray<int,1> >::const_iterator itbSend = localIndexToSend.begin(), itSend, |
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| 261 | iteSend = localIndexToSend.end(); |
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| 262 | int idxSendBuff = 0; |
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| 263 | std::vector<double*> sendBuff(localIndexToSend.size()); |
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[1646] | 264 | double* sendBuffRank; |
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[841] | 265 | for (itSend = itbSend; itSend != iteSend; ++itSend, ++idxSendBuff) |
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[644] | 266 | { |
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[1646] | 267 | int destRank = itSend->first; |
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[841] | 268 | if (0 != itSend->second.numElements()) |
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[1646] | 269 | { |
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| 270 | if (rank != itSend->first) |
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| 271 | sendBuff[idxSendBuff] = new double[itSend->second.numElements()]; |
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| 272 | else |
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| 273 | sendBuffRank = new double[itSend->second.numElements()]; |
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| 274 | } |
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[644] | 275 | } |
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| 276 | |
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[841] | 277 | idxSendBuff = 0; |
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[1601] | 278 | std::vector<MPI_Request> sendRecvRequest(localIndexToSend.size() + itListRecv->size()); |
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| 279 | int position = 0; |
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[841] | 280 | for (itSend = itbSend; itSend != iteSend; ++itSend, ++idxSendBuff) |
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[644] | 281 | { |
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[841] | 282 | int destRank = itSend->first; |
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| 283 | const CArray<int,1>& localIndex_p = itSend->second; |
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| 284 | int countSize = localIndex_p.numElements(); |
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[1646] | 285 | if (destRank != rank) |
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[644] | 286 | { |
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[1646] | 287 | for (int idx = 0; idx < countSize; ++idx) |
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| 288 | { |
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| 289 | sendBuff[idxSendBuff][idx] = dataCurrentSrc(localIndex_p(idx)); |
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| 290 | } |
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| 291 | MPI_Isend(sendBuff[idxSendBuff], countSize, MPI_DOUBLE, destRank, 12, client->intraComm, &sendRecvRequest[position++]); |
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| 292 | |
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[644] | 293 | } |
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[1646] | 294 | else |
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| 295 | { |
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| 296 | for (int idx = 0; idx < countSize; ++idx) |
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| 297 | { |
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| 298 | sendBuffRank[idx] = dataCurrentSrc(localIndex_p(idx)); |
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| 299 | } |
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| 300 | } |
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[644] | 301 | } |
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| 302 | |
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[841] | 303 | // Receiving data on destination fields |
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| 304 | const CGridTransformation::RecvIndexGridDestinationMap& localIndexToReceive = *itListRecv; |
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| 305 | CGridTransformation::RecvIndexGridDestinationMap::const_iterator itbRecv = localIndexToReceive.begin(), itRecv, |
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| 306 | iteRecv = localIndexToReceive.end(); |
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| 307 | int recvBuffSize = 0; |
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[1646] | 308 | for (itRecv = itbRecv; itRecv != iteRecv; ++itRecv) |
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| 309 | { |
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| 310 | if (itRecv->first != rank ) |
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| 311 | recvBuffSize += itRecv->second.size(); |
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| 312 | } |
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| 313 | //(recvBuffSize < itRecv->second.size()) ? itRecv->second.size() : recvBuffSize; |
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[841] | 314 | double* recvBuff; |
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[1646] | 315 | |
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[841] | 316 | if (0 != recvBuffSize) recvBuff = new double[recvBuffSize]; |
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| 317 | int currentBuff = 0; |
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| 318 | for (itRecv = itbRecv; itRecv != iteRecv; ++itRecv) |
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| 319 | { |
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| 320 | int srcRank = itRecv->first; |
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[1646] | 321 | if (srcRank != rank) |
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| 322 | { |
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| 323 | int countSize = itRecv->second.size(); |
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| 324 | MPI_Irecv(recvBuff + currentBuff, countSize, MPI_DOUBLE, srcRank, 12, client->intraComm, &sendRecvRequest[position++]); |
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| 325 | currentBuff += countSize; |
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| 326 | } |
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[841] | 327 | } |
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| 328 | std::vector<MPI_Status> status(sendRecvRequest.size()); |
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[1646] | 329 | MPI_Waitall(position, &sendRecvRequest[0], &status[0]); |
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[709] | 330 | |
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[1646] | 331 | |
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| 332 | |
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[841] | 333 | dataCurrentDest.resize(*itNbListRecv); |
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[1646] | 334 | dataCurrentDest = 0.0; |
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[873] | 335 | |
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[1158] | 336 | std::vector<bool> localInitFlag(dataCurrentDest.numElements(), true); |
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[841] | 337 | currentBuff = 0; |
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[1260] | 338 | bool firstPass=true; |
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[841] | 339 | for (itRecv = itbRecv; itRecv != iteRecv; ++itRecv) |
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| 340 | { |
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[842] | 341 | const std::vector<std::pair<int,double> >& localIndex_p = itRecv->second; |
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[1646] | 342 | int srcRank = itRecv->first; |
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[1679] | 343 | |
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[1681] | 344 | if(filterID >=0) // building_graph |
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[1680] | 345 | { |
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| 346 | (*CWorkflowGraph::mapFilters_ptr_with_info)[filterID].filter_name = (*itAlgo)->getName(); |
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| 347 | } |
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[1646] | 348 | if (srcRank != rank) |
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| 349 | { |
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| 350 | int countSize = itRecv->second.size(); |
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| 351 | (*itAlgo)->apply(localIndex_p, |
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| 352 | recvBuff+currentBuff, |
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| 353 | dataCurrentDest, |
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| 354 | localInitFlag, |
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| 355 | ignoreMissingValue,firstPass); |
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| 356 | currentBuff += countSize; |
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| 357 | } |
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| 358 | else |
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| 359 | { |
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| 360 | (*itAlgo)->apply(localIndex_p, |
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| 361 | sendBuffRank, |
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| 362 | dataCurrentDest, |
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| 363 | localInitFlag, |
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| 364 | ignoreMissingValue,firstPass); |
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| 365 | } |
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[888] | 366 | |
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[1260] | 367 | firstPass=false ; |
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[841] | 368 | } |
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| 369 | |
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[979] | 370 | (*itAlgo)->updateData(dataCurrentDest); |
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| 371 | |
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[841] | 372 | idxSendBuff = 0; |
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| 373 | for (itSend = itbSend; itSend != iteSend; ++itSend, ++idxSendBuff) |
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| 374 | { |
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| 375 | if (0 != itSend->second.numElements()) |
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[1646] | 376 | { |
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| 377 | if (rank != itSend->first) |
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| 378 | delete [] sendBuff[idxSendBuff]; |
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| 379 | else |
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| 380 | delete [] sendBuffRank; |
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| 381 | } |
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[841] | 382 | } |
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| 383 | if (0 != recvBuffSize) delete [] recvBuff; |
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[709] | 384 | } |
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[841] | 385 | if (dataCurrentDest.numElements() != dataDest.numElements()) |
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| 386 | ERROR("CSpatialTransformFilterEngine::apply(const CArray<double, 1>& dataSrc, CArray<double,1>& dataDest)", |
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[1021] | 387 | "Incoherent between the received size and expected size. " << std::endl |
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| 388 | << "Expected size: " << dataDest.numElements() << std::endl |
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| 389 | << "Received size: " << dataCurrentDest.numElements()); |
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[841] | 390 | |
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| 391 | dataDest = dataCurrentDest; |
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[1412] | 392 | |
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[1414] | 393 | CTimer::get("CSpatialTransformFilterEngine::apply").suspend() ; |
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[644] | 394 | } |
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| 395 | } // namespace xios |
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