| 1 | import os |
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| 2 | import sys |
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| 3 | import subprocess |
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| 4 | import socket |
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| 5 | import os.path |
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| 6 | from os import path |
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| 7 | |
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| 8 | |
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| 9 | from default_param import * |
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| 10 | from user_param import * |
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| 11 | # load default_param first, variables defines in user_param will overwrite the default value |
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| 12 | |
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| 13 | |
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| 14 | |
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| 15 | def OSinfo(runthis): |
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| 16 | red = lambda text: '\033[0;31m' + text + '\033[0m' |
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| 17 | osstdout = subprocess.Popen(runthis, shell=True, stdin=subprocess.PIPE, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, close_fds=True) |
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| 18 | theInfo = osstdout.communicate()[0].strip() |
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| 19 | if osstdout.returncode!=0: |
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| 20 | print(red(runthis+" FAILED")) |
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| 21 | print >> sys.stderr, osstdout.returncode |
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| 22 | sys.exit() |
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| 23 | # else: |
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| 24 | # print(runthis+" OK") |
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| 25 | |
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| 26 | |
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| 27 | def write_jz_job(configName, nbproc=8): |
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| 28 | red = lambda text: '\033[0;31m' + text + '\033[0m' |
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| 29 | f=open("jz_job_"+configName+".sh", "w") |
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| 30 | f.write("#!/bin/bash\n") |
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| 31 | f.write("#SBATCH --ntasks="+repr(nbproc)+" # Nombre total de processus MPI\n") |
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| 32 | f.write("#SBATCH --ntasks-per-node=16\n") |
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| 33 | f.write("#SBATCH --hint=nomultithread\n") |
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| 34 | f.write("#SBATCH -t 00:10:00 # Temps elapsed maximum d'execution\n") |
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| 35 | f.write("#SBATCH -o single_config.out # Nom du fichier de sortie\n") |
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| 36 | f.write("#SBATCH -e single_config.err # Nom du fichier d'erreur\n") |
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| 37 | f.write("#SBATCH --account=psl@cpu\n") |
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| 38 | f.write("cd ${SLURM_SUBMIT_DIR}\n") |
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| 39 | f.write("module purge\n") |
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| 40 | f.write("module load intel-all/19.0.4\n") |
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| 41 | f.write("module load netcdf/4.7.0/intel-19.0.4-mpi\n") |
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| 42 | f.write("module load netcdf-cxx/4.2/intel-19.0.4-mpi\n") |
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| 43 | f.write("module load netcdf-fortran/4.4.5/intel-19.0.4-mpi\n") |
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| 44 | f.write("module load gcc/6.5.0/gcc-4.8.5\n") |
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| 45 | f.write("module load cmake\n") |
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| 46 | f.write("module load cdo\n") |
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| 47 | f.write("ulimit -c 0\n") |
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| 48 | xios_root=os.getenv('xios_dir') |
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| 49 | build_folder=os.getenv('build_dir') |
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| 50 | f.write("export xios_dir="+xios_root+"\n") |
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| 51 | f.write("export build_dir="+build_folder+"\n") |
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| 52 | f.write("export machine_name=jeanzay\n") |
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| 53 | f.write("cp ../setup.py ./\n") |
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| 54 | f.write("cp ../run_sub_test.sh ./\n") |
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| 55 | f.write("mv user_params.def user_params.def_bkp\n") |
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| 56 | f.write("cp "+configName+"/setup/user_param.py user_params.def\n") |
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| 57 | f.write("python setup.py\n") |
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| 58 | f.write("cmake .\n") |
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| 59 | f.write("ctest -V #enable all output\n") |
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| 60 | f.write("rm -f setup.py\n") |
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| 61 | f.write("rm -f run_sub_test.sh\n") |
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| 62 | f.write("rm -f run_test_*.py\n") |
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| 63 | f.write("rm -f CMakeLists.txt\n") |
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| 64 | f.write("rm -f context_grid_dynamico.xml\n") |
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| 65 | f.write("rm -f dynamico_grid.nc\n") |
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| 66 | f.write("rm -f default_param.*\n") |
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| 67 | f.write("rm -f user_param.*\n") |
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| 68 | f.write("mv user_params.def_bkp user_params.def\n") |
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| 69 | f.write("\n") |
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| 70 | f.close |
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| 71 | |
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| 72 | def write_irene_job(configName, nbproc=8): |
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| 73 | red = lambda text: '\033[0;31m' + text + '\033[0m' |
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| 74 | f=open("irene_job_"+configName+".sh", "w") |
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| 75 | f.write("#!/bin/bash\n") |
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| 76 | f.write("#MSUB -r XIOS\n") |
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| 77 | f.write("#MSUB -o client_output.out # standard output\n") |
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| 78 | f.write("#MSUB -e client_error.err #error output\n") |
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| 79 | f.write("#MSUB -eo\n") |
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| 80 | f.write("#MSUB -c 1\n") |
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| 81 | f.write("#MSUB -n "+ repr(nbproc) + " # Number of MPI tasks (SPMD case) or cores (MPMD case)\n") |
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| 82 | f.write("#MSUB -X \n") |
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| 83 | f.write("#MSUB -x \n") |
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| 84 | f.write("#MSUB -T 600 # Wall clock limit (seconds)\n") |
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| 85 | f.write("#MSUB -q skylake # thin nodes\n") |
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| 86 | f.write("#MSUB -A devcmip6\n") |
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| 87 | f.write("#MSUB -Q test\n") |
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| 88 | f.write("#MSUB -m work\n") |
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| 89 | f.write("cd $BRIDGE_MSUB_PWD\n") |
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| 90 | f.write("module unload netcdf-c netcdf-fortran hdf5 flavor perl hdf5 boost blitz mpi gnu\n") |
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| 91 | f.write("module load gnu\n") |
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| 92 | f.write("module load mpi/intelmpi/2017.0.6.256\n") |
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| 93 | f.write("module load flavor/buildcompiler/intel/17\n") |
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| 94 | f.write("module load flavor/hdf5/parallel\n") |
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| 95 | f.write("module load netcdf-fortran/4.4.4\n") |
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| 96 | f.write("module load hdf5/1.8.20\n") |
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| 97 | f.write("module load boost\n") |
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| 98 | f.write("module load blitz\n") |
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| 99 | f.write("module load feature/bridge/heterogenous_mpmd\n") |
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| 100 | f.write("module load nco\n") |
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| 101 | f.write("module load cdo\n") |
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| 102 | f.write("export KMP_STACKSIZE=3g\n") |
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| 103 | f.write("export KMP_LIBRARY=turnaround\n") |
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| 104 | f.write("export MKL_SERIAL=YES\n") |
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| 105 | f.write("export OMP_NUM_THREADS=${BRIDGE_MSUB_NCORE}\n") |
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| 106 | f.write("set -x \n") |
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| 107 | xios_root=os.getenv('xios_dir') |
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| 108 | build_folder=os.getenv('build_dir') |
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| 109 | f.write("export xios_dir="+xios_root+"\n") |
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| 110 | f.write("export build_dir="+build_folder+"\n") |
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| 111 | f.write("export machine_name=irene\n") |
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| 112 | f.write("cp ../setup.py ./\n") |
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| 113 | f.write("cp ../run_sub_test.sh ./\n") |
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| 114 | f.write("mv user_params.def user_params.def_bkp\n") |
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| 115 | f.write("cp "+configName+"/setup/user_param.py user_params.def\n") |
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| 116 | f.write("python setup.py\n") |
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| 117 | f.write("cmake .\n") |
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| 118 | f.write("ctest -V #enable all output\n") |
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| 119 | f.write("rm -f setup.py\n") |
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| 120 | f.write("rm -f run_sub_test.sh\n") |
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| 121 | f.write("rm -f run_test_*.py\n") |
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| 122 | f.write("rm -f CMakeLists.txt\n") |
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| 123 | f.write("rm -f context_grid_dynamico.xml\n") |
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| 124 | f.write("rm -f dynamico_grid.nc\n") |
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| 125 | f.write("rm -f default_param.*\n") |
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| 126 | f.write("rm -f user_param.*\n") |
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| 127 | f.write("mv user_params.def_bkp user_params.def\n") |
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| 128 | f.write("\n") |
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| 129 | f.close |
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| 130 | |
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| 131 | |
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| 132 | |
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| 133 | def main(): |
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| 134 | |
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| 135 | black = lambda text: '\033[0;30m' + text + '\033[0m' |
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| 136 | red = lambda text: '\033[0;31m' + text + '\033[0m' |
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| 137 | green = lambda text: '\033[0;32m' + text + '\033[0m' |
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| 138 | yellow = lambda text: '\033[0;33m' + text + '\033[0m' |
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| 139 | blue = lambda text: '\033[0;34m' + text + '\033[0m' |
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| 140 | magenta = lambda text: '\033[0;35m' + text + '\033[0m' |
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| 141 | cyan = lambda text: '\033[0;36m' + text + '\033[0m' |
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| 142 | lgray = lambda text: '\033[0;37m' + text + '\033[0m' |
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| 143 | dgray = lambda text: '\033[1;30m' + text + '\033[0m' |
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| 144 | lred = lambda text: '\033[1;32m' + text + '\033[0m' |
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| 145 | lgreen = lambda text: '\033[1;32m' + text + '\033[0m' |
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| 146 | lyellow = lambda text: '\033[1;33m' + text + '\033[0m' |
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| 147 | lblue = lambda text: '\033[1;34m' + text + '\033[0m' |
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| 148 | lpurple = lambda text: '\033[1;35m' + text + '\033[0m' |
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| 149 | lcyan = lambda text: '\033[1;36m' + text + '\033[0m' |
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| 150 | white = lambda text: '\033[1;37m' + text + '\033[0m' |
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| 151 | |
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| 152 | configNamePattern=[0]*7 |
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| 153 | |
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| 154 | f=open("user_param.py", "r") |
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| 155 | for line in f: |
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| 156 | line = line.strip() |
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| 157 | if line.startswith("UsingServer2"): |
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| 158 | configNamePattern[0] = '_UsingSrv2=' + UsingServer2 |
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| 159 | elif line.startswith("RatioServer2"): |
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| 160 | configNamePattern[1] = '_RatioSrv2=' + repr(RatioServer2) |
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| 161 | elif line.startswith("NumberPoolsServer2"): |
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| 162 | configNamePattern[2] = '_NbPoolsSrv2=' + repr(NumberPoolsServer2) |
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| 163 | elif line.startswith("NumberClients"): |
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| 164 | configNamePattern[3] = '_NbClients=' + repr(NumberClients) |
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| 165 | elif line.startswith("NumberServers"): |
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| 166 | configNamePattern[4] = '_NbServers=' + repr(NumberServers) |
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| 167 | elif line.startswith("Duration"): |
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| 168 | configNamePattern[5] = '_Duration=' + Duration |
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| 169 | elif line.startswith("ATMdomain"): |
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| 170 | configNamePattern[5] = '_ATMdomain=' + ATMdomain |
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| 171 | f.close() |
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| 172 | |
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| 173 | |
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| 174 | |
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| 175 | configName = "config" |
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| 176 | defaultConfig = True |
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| 177 | |
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| 178 | for i in range(len(configNamePattern)): |
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| 179 | if configNamePattern[i] != 0: |
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| 180 | configName = configName + configNamePattern[i] |
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| 181 | defaultConfig = False |
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| 182 | |
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| 183 | if defaultConfig: |
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| 184 | configName = "config_default" |
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| 185 | |
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| 186 | check_result=False |
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| 187 | |
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| 188 | |
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| 189 | if not os.path.exists(configName): |
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| 190 | os.mkdir(configName) |
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| 191 | print blue("\n ****************************************************************") |
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| 192 | print blue(" * Directory " + repr(configName) + " Created ") |
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| 193 | print blue(" * Copy results to \'not_validated_reference\' folder") |
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| 194 | print blue(" ****************************************************************\n") |
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| 195 | |
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| 196 | OSinfo("mkdir "+configName+'/setup') |
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| 197 | OSinfo('mkdir '+configName+'/tmp_reference') |
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| 198 | OSinfo('mkdir '+configName+'/xios_output') |
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| 199 | |
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| 200 | OSinfo('mv param.def '+configName+'/setup/') |
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| 201 | OSinfo('mv all_param.def '+configName+'/setup/') |
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| 202 | OSinfo('mv user_param.py '+configName+'/setup/') |
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| 203 | OSinfo('mv iodef.xml '+configName+'/setup/') |
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| 204 | OSinfo('cp context_atm.xml '+configName+'/setup/') |
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| 205 | OSinfo('cp context_grid_dynamico.xml '+configName+'/setup/') |
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| 206 | OSinfo('cp dynamico_grid.nc '+configName+'/setup/') |
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| 207 | OSinfo('mv xios_*.out '+configName+'/xios_output/') |
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| 208 | OSinfo('mv xios_*.err '+configName+'/xios_output/') |
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| 209 | |
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| 210 | |
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| 211 | f=open("checkfile.def", "r") |
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| 212 | h=open("report.txt", "a+") |
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| 213 | l=open("report.html", "a+") |
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| 214 | h.write("Config : "+configName+"\n") |
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| 215 | l.write("<p>Config : "+configName+"</p>") |
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| 216 | endloop=False |
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| 217 | for line in f: |
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| 218 | line=line.strip() |
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| 219 | line=line.rstrip() |
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| 220 | |
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| 221 | if line.startswith("all"): |
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| 222 | allfiles = os.listdir(os.getcwd()) |
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| 223 | for thisfile in allfiles: |
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| 224 | if thisfile.endswith(".nc") and thisfile!="dynamico_grid.nc": |
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| 225 | cmd = 'mv '+thisfile + ' '+configName+'/tmp_reference/' |
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| 226 | OSinfo(cmd) |
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| 227 | |
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| 228 | h.write("test for "+lpurple("all NC files")+" \t"+yellow('INITIALIZED')+"\n") |
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| 229 | l.write("<p>test for <font color=\"purple\">"+"all NC files"+"</font> <font color=\"darkorange\">INITIALIZED</font></p>") |
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| 230 | print yellow("\n ****************************************") |
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| 231 | print yellow(" ** "+"all NC files"+" is stored as temporal reference !!! **") |
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| 232 | print yellow("\n ****************************************") |
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| 233 | |
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| 234 | break |
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| 235 | |
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| 236 | if not line.startswith("#") and len(line) != 0: |
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| 237 | cmd = 'mv '+line + ' '+configName+'/tmp_reference/' |
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| 238 | OSinfo(cmd) |
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| 239 | |
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| 240 | h.write("test for "+lpurple(line)+" \t"+yellow('INITIALIZED')+"\n") |
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| 241 | l.write("<p>test for <font color=\"purple\">"+line+"</font> <font color=\"darkorange\">INITIALIZED</font></p>") |
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| 242 | print yellow("\n ****************************************") |
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| 243 | print yellow(" ** "+line+" is stored as temporal reference !!! **") |
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| 244 | print yellow("\n ****************************************") |
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| 245 | |
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| 246 | f.close() |
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| 247 | h.write("\n") |
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| 248 | l.write("<br>") |
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| 249 | h.close() |
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| 250 | #generate job scripts |
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| 251 | hostname=os.getenv('machine_name') |
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| 252 | if hostname.startswith("jeanzay"): |
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| 253 | write_jz_job(configName, NumberClients+NumberServers) |
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| 254 | |
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| 255 | elif hostname.startswith("irene"): |
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| 256 | write_irene_job(configName, NumberClients+NumberServers) |
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| 257 | |
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| 258 | else : |
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| 259 | print("machine unknown") |
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| 260 | print >> sys.stderr, 1 |
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| 261 | sys.exit() |
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| 262 | |
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| 263 | |
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| 264 | else: |
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| 265 | print blue("\n ********************************************************") |
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| 266 | print blue(" * Directory " + repr(configName) + " already exists") |
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| 267 | print blue(" * Start comparing results with references") |
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| 268 | print blue(" ********************************************************\n") |
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| 269 | |
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| 270 | tmp_ref = os.path.isdir(configName+'/tmp_reference') |
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| 271 | ref = os.path.isdir(configName+'/reference') and not tmp_ref |
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| 272 | |
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| 273 | if ref: |
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| 274 | print blue("\n =====================================") |
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| 275 | print blue(" | Comparing results with references |") |
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| 276 | print blue(" =====================================\n") |
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| 277 | path = configName+'/reference/' |
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| 278 | elif tmp_ref: |
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| 279 | print blue("\n ===================================================") |
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| 280 | print blue(" | Comparing results with NON-Validated references |") |
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| 281 | print blue(" ===================================================\n") |
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| 282 | path = configName+'/tmp_reference/' |
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| 283 | |
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| 284 | f=open("checkfile.def", "r") |
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| 285 | h=open("report.txt", "a+") |
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| 286 | l=open("report.html", "a+") |
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| 287 | |
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| 288 | |
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| 289 | h.write("Config : "+configName+"\n") |
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| 290 | l.write("<p>Config : "+configName+"</p>") |
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| 291 | for line in f: |
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| 292 | |
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| 293 | line=line.strip() |
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| 294 | line=line.rstrip() |
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| 295 | |
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| 296 | if line.startswith("all") : |
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| 297 | for thisfile in os.listdir(path): |
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| 298 | if thisfile.endswith(".nc"): |
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| 299 | cmd = 'cdo -W diffn '+ thisfile +' '+ path + thisfile + ' | tail -1 > diff.txt' |
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| 300 | |
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| 301 | OSinfo(cmd) |
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| 302 | |
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| 303 | if os.stat("diff.txt").st_size==0: |
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| 304 | h.write("test for "+lpurple(thisfile)+" \t"+green('PASSED')+"\n") |
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| 305 | l.write("<p>test for <font color=\"purple\">"+thisfile+"</font> <font color=\"green\">PASSED</font></p>") |
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| 306 | print green("\n ****************************************") |
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| 307 | print green(" ** "+thisfile+" is valid !!! **") |
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| 308 | print green("\n ****************************************") |
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| 309 | |
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| 310 | else: |
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| 311 | g=open("diff.txt", "r") |
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| 312 | for gline in g: |
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| 313 | if gline.strip().startswith("0") or ":" in gline : |
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| 314 | h.write("test for "+lpurple(thisfile)+" \t"+green('PASSED')+"\n") |
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| 315 | l.write("<p>test for <font color=\"purple\">"+thisfile+"</font> <font color=\"green\">PASSED</font></p>") |
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| 316 | print green("\n ****************************************") |
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| 317 | print green(" ** "+thisfile+" is valid !!! **") |
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| 318 | print green("\n ****************************************") |
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| 319 | else: |
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| 320 | h.write("test for "+lpurple(thisfile)+" \t"+red('FAILED')+"\n") |
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| 321 | l.write("<p>test for <font color=\"purple\">"+thisfile+"</font> <font color=\"red\">FAILED</font></p>") |
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| 322 | print red("\n **************************************************") |
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| 323 | print red(" ** "+thisfile+" is NOT valid. Please debugging.. **") |
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| 324 | print red("\n **************************************************") |
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| 325 | g.close() |
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| 326 | |
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| 327 | # generate job submission script |
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| 328 | hostname=os.getenv('machine_name') |
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| 329 | |
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| 330 | if hostname.startswith("jeanzay"): |
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| 331 | write_jz_job(configName, NumberClients+NumberServers) |
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| 332 | |
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| 333 | elif hostname.startswith("irene"): |
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| 334 | write_irene_job(configName, NumberClients+NumberServers) |
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| 335 | |
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| 336 | else : |
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| 337 | print("machine unknown") |
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| 338 | print >> sys.stderr, 1 |
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| 339 | sys.exit() |
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| 340 | break |
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| 341 | |
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| 342 | |
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| 343 | elif not line.startswith("#") and len(line) != 0: |
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| 344 | cmd = 'cdo -W diffn '+ line +' '+ path + line + ' | tail -1 > diff.txt' |
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| 345 | |
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| 346 | OSinfo(cmd) |
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| 347 | |
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| 348 | if os.stat("diff.txt").st_size==0: |
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| 349 | h.write("test for "+lpurple(line)+" \t"+green('PASSED')+"\n") |
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| 350 | l.write("<p>test for <font color=\"purple\">"+line+"</font> <font color=\"green\">PASSED</font></p>") |
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| 351 | print green("\n ****************************************") |
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| 352 | print green(" ** "+line+" is valid !!! **") |
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| 353 | print green("\n ****************************************") |
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| 354 | |
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| 355 | else: |
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| 356 | g=open("diff.txt", "r") |
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| 357 | for gline in g: |
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| 358 | if gline.strip().startswith("0") or ":" in gline : |
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| 359 | h.write("test for "+lpurple(line)+" \t"+green('PASSED')+"\n") |
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| 360 | l.write("<p>test for <font color=\"purple\">"+line+"</font> <font color=\"green\">PASSED</font></p>") |
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| 361 | print green("\n ****************************************") |
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| 362 | print green(" ** "+line+" is valid !!! **") |
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| 363 | print green("\n ****************************************") |
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| 364 | else: |
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| 365 | h.write("test for "+lpurple(line)+" \t"+red('FAILED')+"\n") |
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| 366 | l.write("<p>test for <font color=\"purple\">"+line+"</font> <font color=\"red\">FAILED</font></p>") |
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| 367 | print red("\n **************************************************") |
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| 368 | print red(" ** "+line+" is NOT valid. Please debugging.. **") |
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| 369 | print red("\n **************************************************") |
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| 370 | g.close() |
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| 371 | |
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| 372 | # generate job submission script |
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| 373 | hostname=os.getenv('machine_name') |
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| 374 | |
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| 375 | if hostname.startswith("jeanzay"): |
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| 376 | write_jz_job(configName, NumberClients+NumberServers) |
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| 377 | |
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| 378 | elif hostname.startswith("irene"): |
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| 379 | write_irene_job(configName, NumberClients+NumberServers) |
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| 380 | |
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| 381 | else : |
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| 382 | print("machine unknown") |
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| 383 | print >> sys.stderr, 1 |
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| 384 | sys.exit() |
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| 385 | |
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| 386 | |
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| 387 | f.close() |
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| 388 | h.write("\n") |
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| 389 | l.write("<br>") |
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| 390 | h.close() |
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| 391 | |
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| 392 | if not os.path.exists('current_run'): |
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| 393 | OSinfo('mkdir current_run') |
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| 394 | |
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| 395 | if not os.path.exists('current_run/'+configName): |
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| 396 | OSinfo('mkdir current_run/'+configName) |
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| 397 | |
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| 398 | OSinfo('mv -f param.def current_run/'+configName) |
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| 399 | OSinfo('mv -f all_param.def current_run/'+configName) |
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| 400 | OSinfo('mv -f user_param.py current_run/'+configName) |
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| 401 | OSinfo('mv -f iodef.xml current_run/'+configName) |
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| 402 | OSinfo('rm -f current_run/'+configName+'/context_atm.xml') |
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| 403 | OSinfo('cp -n context_atm.xml current_run/'+configName) |
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| 404 | OSinfo('cp -f context_grid_dynamico.xml current_run/'+configName) |
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| 405 | OSinfo('cp -f dynamico_grid.nc current_run/'+configName) |
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| 406 | OSinfo('mv -f xios_*.out current_run/'+configName) |
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| 407 | OSinfo('mv -f xios_*.err current_run/'+configName) |
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| 408 | |
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| 409 | |
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| 410 | |
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| 411 | |
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| 412 | if __name__== "__main__": |
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| 413 | main() |
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