1 | #include "axis.hpp" |
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2 | |
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3 | #include "attribute_template.hpp" |
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4 | #include "object_template.hpp" |
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5 | #include "group_template.hpp" |
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6 | #include "message.hpp" |
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7 | #include "type.hpp" |
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8 | #include "context.hpp" |
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9 | #include "context_client.hpp" |
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10 | #include "context_server.hpp" |
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11 | #include "xios_spl.hpp" |
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12 | #include "server_distribution_description.hpp" |
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13 | #include "client_server_mapping_distributed.hpp" |
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14 | #include "distribution_client.hpp" |
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15 | |
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16 | namespace xios { |
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17 | |
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18 | /// ////////////////////// Definitions ////////////////////// /// |
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19 | |
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20 | CAxis::CAxis(void) |
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21 | : CObjectTemplate<CAxis>() |
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22 | , CAxisAttributes(), isChecked(false), relFiles() |
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23 | , hasBounds(false), isCompressible_(false) |
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24 | , transformationMap_(), hasValue(false), hasLabel(false) |
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25 | , clients() |
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26 | { |
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27 | } |
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28 | |
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29 | CAxis::CAxis(const StdString & id) |
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30 | : CObjectTemplate<CAxis>(id) |
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31 | , CAxisAttributes(), isChecked(false), relFiles() |
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32 | , hasBounds(false), isCompressible_(false) |
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33 | , transformationMap_(), hasValue(false), hasLabel(false) |
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34 | , clients() |
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35 | { |
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36 | } |
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37 | |
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38 | CAxis::~CAxis(void) |
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39 | { /* Ne rien faire de plus */ } |
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40 | |
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41 | std::map<StdString, ETranformationType> CAxis::transformationMapList_ = std::map<StdString, ETranformationType>(); |
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42 | bool CAxis::dummyTransformationMapList_ = CAxis::initializeTransformationMap(CAxis::transformationMapList_); |
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43 | bool CAxis::initializeTransformationMap(std::map<StdString, ETranformationType>& m) |
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44 | TRY |
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45 | { |
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46 | m["zoom_axis"] = TRANS_ZOOM_AXIS; |
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47 | m["interpolate_axis"] = TRANS_INTERPOLATE_AXIS; |
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48 | m["extract_axis"] = TRANS_EXTRACT_AXIS; |
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49 | m["inverse_axis"] = TRANS_INVERSE_AXIS; |
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50 | m["reduce_domain"] = TRANS_REDUCE_DOMAIN_TO_AXIS; |
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51 | m["reduce_axis"] = TRANS_REDUCE_AXIS_TO_AXIS; |
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52 | m["extract_domain"] = TRANS_EXTRACT_DOMAIN_TO_AXIS; |
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53 | m["temporal_splitting"] = TRANS_TEMPORAL_SPLITTING; |
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54 | m["duplicate_scalar"] = TRANS_DUPLICATE_SCALAR_TO_AXIS; |
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55 | |
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56 | } |
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57 | CATCH |
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58 | |
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59 | ///--------------------------------------------------------------- |
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60 | |
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61 | const std::set<StdString> & CAxis::getRelFiles(void) const |
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62 | TRY |
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63 | { |
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64 | return (this->relFiles); |
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65 | } |
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66 | CATCH |
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67 | |
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68 | bool CAxis::IsWritten(const StdString & filename) const |
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69 | TRY |
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70 | { |
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71 | return (this->relFiles.find(filename) != this->relFiles.end()); |
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72 | } |
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73 | CATCH |
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74 | |
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75 | bool CAxis::isWrittenCompressed(const StdString& filename) const |
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76 | TRY |
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77 | { |
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78 | return (this->relFilesCompressed.find(filename) != this->relFilesCompressed.end()); |
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79 | } |
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80 | CATCH |
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81 | |
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82 | bool CAxis::isDistributed(void) const |
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83 | TRY |
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84 | { |
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85 | bool distributed = (!this->begin.isEmpty() && !this->n.isEmpty() && (this->begin + this->n < this->n_glo)) || |
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86 | (!this->n.isEmpty() && (this->n != this->n_glo)); |
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87 | // A condition to make sure that if there is only one client, axis |
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88 | // should be considered to be distributed. This should be a temporary solution |
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89 | distributed |= (1 == CContext::getCurrent()->intraCommSize_); |
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90 | return distributed; |
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91 | } |
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92 | CATCH |
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93 | |
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94 | /*! |
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95 | * Compute if the axis can be ouput in a compressed way. |
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96 | * In this case the workflow view on server side must be the same |
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97 | * than the full view for all context rank. The result is stored on |
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98 | * internal isCompressible_ attribute. |
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99 | */ |
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100 | void CAxis::computeIsCompressible(void) |
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101 | TRY |
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102 | { |
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103 | // mesh is compressible contains some masked or indexed value, ie if full view is different of workflow view. |
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104 | // But now assume that the size of the 2 view must be equal for everybody. True on server side |
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105 | int isSameView = getLocalView(CElementView::FULL)->getSize() == getLocalView(CElementView::WORKFLOW)->getSize(); |
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106 | MPI_Allreduce(MPI_IN_PLACE, &isSameView, 1, MPI_INT, MPI_LAND, CContext::getCurrent()->getIntraComm()) ; |
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107 | if (isSameView) isCompressible_ = false ; |
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108 | else isCompressible_ = true ; |
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109 | isCompressibleComputed_=true ; |
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110 | } |
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111 | CATCH |
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112 | |
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113 | void CAxis::addRelFile(const StdString & filename) |
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114 | TRY |
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115 | { |
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116 | this->relFiles.insert(filename); |
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117 | } |
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118 | CATCH_DUMP_ATTR |
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119 | |
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120 | void CAxis::addRelFileCompressed(const StdString& filename) |
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121 | TRY |
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122 | { |
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123 | this->relFilesCompressed.insert(filename); |
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124 | } |
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125 | CATCH_DUMP_ATTR |
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126 | |
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127 | //---------------------------------------------------------------- |
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128 | |
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129 | /*! |
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130 | * Compute the minimum buffer size required to send the attributes to the server(s). |
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131 | * |
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132 | * \return A map associating the server rank with its minimum buffer size. |
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133 | */ |
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134 | std::map<int, StdSize> CAxis::getAttributesBufferSize(CContextClient* client, const std::vector<int>& globalDim, int orderPositionInGrid, |
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135 | CServerDistributionDescription::ServerDistributionType distType) |
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136 | TRY |
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137 | { |
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138 | |
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139 | std::map<int, StdSize> attributesSizes = getMinimumBufferSizeForAttributes(client); |
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140 | |
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141 | // bool isNonDistributed = (n_glo == n); |
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142 | bool isDistributed = (orderPositionInGrid == CServerDistributionDescription::defaultDistributedDimension(globalDim.size(), distType)) |
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143 | || (index.numElements() != n_glo); |
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144 | |
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145 | if (client->isServerLeader()) |
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146 | { |
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147 | // size estimation for sendServerAttribut |
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148 | size_t size = 6 * sizeof(size_t); |
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149 | // size estimation for sendNonDistributedValue |
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150 | if (!isDistributed) |
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151 | { |
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152 | // size = std::max(size, CArray<double,1>::size(n_glo) + (isCompressible_ ? CArray<int,1>::size(n_glo) : 0)); |
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153 | size += CArray<int,1>::size(n_glo); |
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154 | size += CArray<int,1>::size(n_glo); |
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155 | size += CArray<bool,1>::size(n_glo); |
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156 | size += CArray<double,1>::size(n_glo); |
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157 | if (hasBounds) |
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158 | size += CArray<double,2>::size(2*n_glo); |
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159 | if (hasLabel) |
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160 | size += CArray<StdString,1>::size(n_glo); |
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161 | } |
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162 | size += CEventClient::headerSize + getId().size() + sizeof(size_t); |
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163 | |
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164 | const std::list<int>& ranks = client->getRanksServerLeader(); |
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165 | for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank) |
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166 | { |
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167 | if (size > attributesSizes[*itRank]) |
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168 | attributesSizes[*itRank] = size; |
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169 | } |
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170 | const std::list<int>& ranksNonLeaders = client->getRanksServerNotLeader(); |
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171 | for (std::list<int>::const_iterator itRank = ranksNonLeaders.begin(), itRankEnd = ranksNonLeaders.end(); itRank != itRankEnd; ++itRank) |
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172 | { |
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173 | if (size > attributesSizes[*itRank]) |
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174 | attributesSizes[*itRank] = size; |
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175 | } |
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176 | |
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177 | } |
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178 | |
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179 | if (isDistributed) |
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180 | { |
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181 | // size estimation for sendDistributedValue |
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182 | std::unordered_map<int, vector<size_t> >::const_iterator it, ite = indSrv_[client->serverSize].end(); |
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183 | for (it = indSrv_[client->serverSize].begin(); it != ite; ++it) |
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184 | { |
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185 | size_t size = 6 * sizeof(size_t); |
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186 | size += CArray<int,1>::size(it->second.size()); |
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187 | size += CArray<int,1>::size(it->second.size()); |
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188 | size += CArray<bool,1>::size(it->second.size()); |
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189 | size += CArray<double,1>::size(it->second.size()); |
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190 | if (hasBounds) |
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191 | size += CArray<double,2>::size(2 * it->second.size()); |
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192 | if (hasLabel) |
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193 | size += CArray<StdString,1>::size(it->second.size()); |
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194 | |
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195 | size += CEventClient::headerSize + getId().size() + sizeof(size_t); |
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196 | if (size > attributesSizes[it->first]) |
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197 | attributesSizes[it->first] = size; |
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198 | } |
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199 | } |
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200 | return attributesSizes; |
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201 | } |
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202 | CATCH_DUMP_ATTR |
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203 | |
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204 | //---------------------------------------------------------------- |
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205 | |
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206 | StdString CAxis::GetName(void) { return (StdString("axis")); } |
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207 | StdString CAxis::GetDefName(void){ return (CAxis::GetName()); } |
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208 | ENodeType CAxis::GetType(void) { return (eAxis); } |
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209 | |
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210 | //---------------------------------------------------------------- |
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211 | |
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212 | CAxis* CAxis::createAxis() |
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213 | TRY |
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214 | { |
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215 | CAxis* axis = CAxisGroup::get("axis_definition")->createChild(); |
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216 | return axis; |
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217 | } |
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218 | CATCH |
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219 | |
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220 | /*! |
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221 | Check common attributes of an axis. |
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222 | This check should be done in the very beginning of work flow |
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223 | */ |
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224 | void CAxis::checkAttributes(void) |
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225 | TRY |
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226 | { |
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227 | if (checkAttributes_done_) return ; |
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228 | |
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229 | CContext* context=CContext::getCurrent(); |
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230 | |
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231 | if (this->n_glo.isEmpty()) |
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232 | ERROR("CAxis::checkAttributes(void)", |
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233 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
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234 | << "The axis is wrongly defined, attribute 'n_glo' must be specified"); |
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235 | StdSize size = this->n_glo.getValue(); |
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236 | |
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237 | if (!this->index.isEmpty()) |
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238 | { |
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239 | if (n.isEmpty()) n = index.numElements(); |
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240 | |
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241 | // It's not so correct but if begin is not the first value of index |
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242 | // then data on the local axis has user-defined distribution. In this case, begin has no meaning. |
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243 | if (begin.isEmpty()) begin = index(0); |
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244 | } |
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245 | else |
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246 | { |
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247 | if (!this->begin.isEmpty()) |
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248 | { |
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249 | if (begin < 0 || begin > size - 1) |
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250 | ERROR("CAxis::checkAttributes(void)", |
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251 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
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252 | << "The axis is wrongly defined, attribute 'begin' (" << begin.getValue() << ") must be non-negative and smaller than size-1 (" << size - 1 << ")."); |
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253 | } |
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254 | else this->begin.setValue(0); |
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255 | |
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256 | if (!this->n.isEmpty()) |
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257 | { |
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258 | if (n < 0 || n > size) |
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259 | ERROR("CAxis::checkAttributes(void)", |
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260 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
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261 | << "The axis is wrongly defined, attribute 'n' (" << n.getValue() << ") must be non-negative and smaller than size (" << size << ")."); |
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262 | } |
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263 | else this->n.setValue(size); |
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264 | |
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265 | { |
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266 | index.resize(n); |
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267 | for (int i = 0; i < n; ++i) index(i) = i+begin; |
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268 | } |
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269 | } |
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270 | |
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271 | if (!this->value.isEmpty()) |
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272 | { |
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273 | StdSize true_size = value.numElements(); |
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274 | if (this->n.getValue() != true_size) |
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275 | ERROR("CAxis::checkAttributes(void)", |
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276 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
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277 | << "The axis is wrongly defined, attribute 'value' has a different size (" << true_size |
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278 | << ") than the one defined by the \'size\' attribute (" << n.getValue() << ")."); |
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279 | this->hasValue = true; |
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280 | } |
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281 | |
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282 | this->checkBounds(); |
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283 | this->checkMask(); |
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284 | this->checkData(); |
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285 | this->checkLabel(); |
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286 | initializeLocalElement() ; |
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287 | addFullView() ; |
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288 | addWorkflowView() ; |
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289 | addModelView() ; |
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290 | |
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291 | checkAttributes_done_ = true ; |
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292 | } |
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293 | CATCH_DUMP_ATTR |
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294 | |
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295 | |
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296 | |
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297 | /*! |
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298 | Check the validity of data, fill in values if any, and apply mask. |
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299 | */ |
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300 | void CAxis::checkData() |
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301 | TRY |
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302 | { |
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303 | if (data_begin.isEmpty()) data_begin.setValue(0); |
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304 | |
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305 | if (data_n.isEmpty()) |
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306 | { |
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307 | data_n.setValue(n); |
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308 | } |
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309 | else if (data_n.getValue() < 0) |
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310 | { |
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311 | ERROR("CAxis::checkData(void)", |
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312 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
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313 | << "The data size should be strictly positive ('data_n' = " << data_n.getValue() << ")."); |
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314 | } |
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315 | |
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316 | if (data_index.isEmpty()) |
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317 | { |
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318 | data_index.resize(data_n); |
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319 | for (int i = 0; i < data_n; ++i) |
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320 | { |
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321 | if ((i+data_begin) >= 0 && (i+data_begin<n)) |
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322 | { |
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323 | if (mask(i+data_begin)) |
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324 | data_index(i) = i+data_begin; |
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325 | else |
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326 | data_index(i) = -1; |
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327 | } |
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328 | else |
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329 | data_index(i) = -1; |
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330 | } |
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331 | } |
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332 | else |
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333 | { |
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334 | if (data_index.numElements() != data_n) |
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335 | { |
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336 | ERROR("CAxis::checkData(void)", |
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337 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
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338 | << "The size of data_index = "<< data_index.numElements() << "is not equal to the data size data_n = " << data_n.getValue() << ")."); |
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339 | } |
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340 | for (int i = 0; i < data_n; ++i) |
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341 | { |
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342 | if (data_index(i) >= 0 && data_index(i)<n) |
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343 | if (!mask(data_index(i))) data_index(i) = -1; |
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344 | } |
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345 | } |
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346 | |
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347 | } |
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348 | CATCH_DUMP_ATTR |
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349 | |
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350 | size_t CAxis::getGlobalWrittenSize(void) |
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351 | { |
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352 | return n_glo ; |
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353 | } |
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354 | |
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355 | /*! |
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356 | Check validity of mask info and fill in values if any. |
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357 | */ |
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358 | void CAxis::checkMask() |
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359 | TRY |
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360 | { |
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361 | if (!mask.isEmpty()) |
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362 | { |
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363 | if (mask.extent(0) != n) |
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364 | { |
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365 | ERROR("CAxis::checkMask(void)", |
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366 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
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367 | << "The mask does not have the same size as the local domain." << std::endl |
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368 | << "Local size is " << n.getValue() << "." << std::endl |
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369 | << "Mask size is " << mask.extent(0) << "."); |
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370 | } |
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371 | } |
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372 | else |
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373 | { |
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374 | mask.resize(n); |
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375 | mask = true; |
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376 | } |
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377 | } |
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378 | CATCH_DUMP_ATTR |
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379 | |
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380 | /*! |
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381 | Check validity of bounds info and fill in values if any. |
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382 | */ |
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383 | void CAxis::checkBounds() |
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384 | TRY |
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385 | { |
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386 | if (!bounds.isEmpty()) |
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387 | { |
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388 | if (bounds.extent(0) != 2 || bounds.extent(1) != n) |
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389 | ERROR("CAxis::checkAttributes(void)", |
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390 | << "The bounds array of the axis [ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] must be of dimension 2 x axis size." << std::endl |
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391 | << "Axis size is " << n.getValue() << "." << std::endl |
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392 | << "Bounds size is "<< bounds.extent(0) << " x " << bounds.extent(1) << "."); |
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393 | hasBounds = true; |
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394 | } |
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395 | else hasBounds = false; |
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396 | } |
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397 | CATCH_DUMP_ATTR |
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398 | |
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399 | void CAxis::checkLabel() |
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400 | TRY |
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401 | { |
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402 | if (!label.isEmpty()) |
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403 | { |
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404 | if (label.extent(0) != n) |
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405 | ERROR("CAxis::checkLabel(void)", |
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406 | << "The label array of the axis [ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] must be of dimension of axis size." << std::endl |
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407 | << "Axis size is " << n.getValue() << "." << std::endl |
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408 | << "label size is "<< label.extent(0)<< " ."); |
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409 | hasLabel = true; |
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410 | } |
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411 | else hasLabel = false; |
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412 | } |
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413 | CATCH_DUMP_ATTR |
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414 | |
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415 | |
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416 | /*! |
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417 | Dispatch event from the lower communication layer then process event according to its type |
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418 | */ |
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419 | bool CAxis::dispatchEvent(CEventServer& event) |
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420 | TRY |
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421 | { |
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422 | if (SuperClass::dispatchEvent(event)) return true; |
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423 | else |
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424 | { |
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425 | switch(event.type) |
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426 | { |
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427 | case EVENT_ID_AXIS_DISTRIBUTION: |
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428 | recvAxisDistribution(event); |
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429 | return true; |
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430 | break; |
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431 | case EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE: |
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432 | recvDistributedAttributes(event); |
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433 | return true; |
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434 | break; |
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435 | default : |
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436 | ERROR("bool CAxis::dispatchEvent(CEventServer& event)", |
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437 | << "Unknown Event"); |
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438 | return false; |
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439 | } |
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440 | } |
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441 | } |
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442 | CATCH |
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443 | |
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444 | /* to remove later when reimplementing coupling */ |
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445 | void CAxis::sendAxisToCouplerOut(CContextClient* client, const std::vector<int>& globalDim, int orderPositionInGrid, const string& fieldId, int posInGrid) |
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446 | { |
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447 | if (sendAxisToCouplerOut_done_.count(client)!=0) return ; |
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448 | else sendAxisToCouplerOut_done_.insert(client) ; |
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449 | |
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450 | string axisId="_axis["+std::to_string(posInGrid)+"]_of_"+fieldId ; |
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451 | |
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452 | } |
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453 | |
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454 | string CAxis::getCouplingAlias(const string& fieldId, int posInGrid) |
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455 | { |
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456 | return "_axis["+std::to_string(posInGrid)+"]_of_"+fieldId ; |
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457 | } |
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458 | |
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459 | void CAxis::makeAliasForCoupling(const string& fieldId, int posInGrid) |
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460 | { |
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461 | const string axisId = getCouplingAlias(fieldId,posInGrid) ; |
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462 | this->createAlias(axisId) ; |
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463 | } |
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464 | |
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465 | |
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466 | /*! |
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467 | Compare two axis objects. |
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468 | They are equal if only if they have identical attributes as well as their values. |
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469 | Moreover, they must have the same transformations. |
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470 | \param [in] axis Compared axis |
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471 | \return result of the comparison |
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472 | */ |
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473 | bool CAxis::isEqual(CAxis* obj) |
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474 | TRY |
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475 | { |
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476 | vector<StdString> excludedAttr; |
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477 | excludedAttr.push_back("axis_ref"); |
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478 | |
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479 | bool objEqual = SuperClass::isEqual(obj, excludedAttr); |
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480 | if (!objEqual) return objEqual; |
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481 | |
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482 | TransMapTypes thisTrans = this->getAllTransformations(); |
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483 | TransMapTypes objTrans = obj->getAllTransformations(); |
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484 | |
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485 | TransMapTypes::const_iterator it, itb, ite; |
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486 | std::vector<ETranformationType> thisTransType, objTransType; |
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487 | for (it = thisTrans.begin(); it != thisTrans.end(); ++it) |
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488 | thisTransType.push_back(it->first); |
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489 | for (it = objTrans.begin(); it != objTrans.end(); ++it) |
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490 | objTransType.push_back(it->first); |
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491 | |
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492 | if (thisTransType.size() != objTransType.size()) return false; |
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493 | for (int idx = 0; idx < thisTransType.size(); ++idx) |
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494 | objEqual &= (thisTransType[idx] == objTransType[idx]); |
---|
495 | |
---|
496 | return objEqual; |
---|
497 | } |
---|
498 | CATCH_DUMP_ATTR |
---|
499 | |
---|
500 | /* |
---|
501 | Add transformation into axis. This function only servers for Fortran interface |
---|
502 | \param [in] transType transformation type |
---|
503 | \param [in] id identifier of the transformation object |
---|
504 | */ |
---|
505 | CTransformation<CAxis>* CAxis::addTransformation(ETranformationType transType, const StdString& id) |
---|
506 | TRY |
---|
507 | { |
---|
508 | transformationMap_.push_back(std::make_pair(transType, CTransformation<CAxis>::createTransformation(transType,id))); |
---|
509 | return transformationMap_.back().second; |
---|
510 | } |
---|
511 | CATCH_DUMP_ATTR |
---|
512 | |
---|
513 | /* |
---|
514 | Check whether an axis has (spatial) transformation |
---|
515 | */ |
---|
516 | bool CAxis::hasTransformation() |
---|
517 | TRY |
---|
518 | { |
---|
519 | return (!transformationMap_.empty()); |
---|
520 | } |
---|
521 | CATCH_DUMP_ATTR |
---|
522 | |
---|
523 | /* |
---|
524 | Set transformation |
---|
525 | \param [in] axisTrans transformation to set |
---|
526 | */ |
---|
527 | void CAxis::setTransformations(const TransMapTypes& axisTrans) |
---|
528 | TRY |
---|
529 | { |
---|
530 | transformationMap_ = axisTrans; |
---|
531 | } |
---|
532 | CATCH_DUMP_ATTR |
---|
533 | |
---|
534 | /* |
---|
535 | Return all transformation held by the axis |
---|
536 | \return transformation the axis has |
---|
537 | */ |
---|
538 | CAxis::TransMapTypes CAxis::getAllTransformations(void) |
---|
539 | TRY |
---|
540 | { |
---|
541 | return transformationMap_; |
---|
542 | } |
---|
543 | CATCH_DUMP_ATTR |
---|
544 | |
---|
545 | /* |
---|
546 | Duplicate transformation of another axis |
---|
547 | \param [in] src axis whose transformations are copied |
---|
548 | */ |
---|
549 | void CAxis::duplicateTransformation(CAxis* src) |
---|
550 | TRY |
---|
551 | { |
---|
552 | if (src->hasTransformation()) |
---|
553 | { |
---|
554 | this->setTransformations(src->getAllTransformations()); |
---|
555 | } |
---|
556 | } |
---|
557 | CATCH_DUMP_ATTR |
---|
558 | |
---|
559 | /*! |
---|
560 | * Go through the hierarchy to find the axis from which the transformations must be inherited |
---|
561 | */ |
---|
562 | void CAxis::solveInheritanceTransformation_old() |
---|
563 | TRY |
---|
564 | { |
---|
565 | if (hasTransformation() || !hasDirectAxisReference()) |
---|
566 | return; |
---|
567 | |
---|
568 | CAxis* axis = this; |
---|
569 | std::vector<CAxis*> refAxis; |
---|
570 | while (!axis->hasTransformation() && axis->hasDirectAxisReference()) |
---|
571 | { |
---|
572 | refAxis.push_back(axis); |
---|
573 | axis = axis->getDirectAxisReference(); |
---|
574 | } |
---|
575 | |
---|
576 | if (axis->hasTransformation()) |
---|
577 | for (size_t i = 0; i < refAxis.size(); ++i) |
---|
578 | refAxis[i]->setTransformations(axis->getAllTransformations()); |
---|
579 | } |
---|
580 | CATCH_DUMP_ATTR |
---|
581 | |
---|
582 | void CAxis::solveInheritanceTransformation() |
---|
583 | TRY |
---|
584 | { |
---|
585 | if (solveInheritanceTransformation_done_) return; |
---|
586 | else solveInheritanceTransformation_done_=true ; |
---|
587 | |
---|
588 | CAxis* axis = this; |
---|
589 | std::list<CAxis*> refAxis; |
---|
590 | bool out=false ; |
---|
591 | vector<StdString> excludedAttr; |
---|
592 | excludedAttr.push_back("axis_ref"); |
---|
593 | |
---|
594 | refAxis.push_front(axis) ; |
---|
595 | while (axis->hasDirectAxisReference() && !out) |
---|
596 | { |
---|
597 | CAxis* lastAxis=axis ; |
---|
598 | axis = axis->getDirectAxisReference(); |
---|
599 | axis->solveRefInheritance() ; |
---|
600 | if (!axis->SuperClass::isEqual(lastAxis,excludedAttr)) out=true ; |
---|
601 | refAxis.push_front(axis) ; |
---|
602 | } |
---|
603 | |
---|
604 | CTransformationPaths::TPath path ; |
---|
605 | auto& pathList = std::get<2>(path) ; |
---|
606 | std::get<0>(path) = EElement::AXIS ; |
---|
607 | std::get<1>(path) = refAxis.front()->getId() ; |
---|
608 | for (auto& axis : refAxis) |
---|
609 | { |
---|
610 | CAxis::TransMapTypes transformations = axis->getAllTransformations(); |
---|
611 | for(auto& transformation : transformations) pathList.push_back({transformation.second->getTransformationType(), |
---|
612 | transformation.second->getId()}) ; |
---|
613 | } |
---|
614 | transformationPaths_.addPath(path) ; |
---|
615 | |
---|
616 | } |
---|
617 | CATCH_DUMP_ATTR |
---|
618 | |
---|
619 | void CAxis::setContextClient(CContextClient* contextClient) |
---|
620 | TRY |
---|
621 | { |
---|
622 | if (clientsSet.find(contextClient)==clientsSet.end()) |
---|
623 | { |
---|
624 | clients.push_back(contextClient) ; |
---|
625 | clientsSet.insert(contextClient); |
---|
626 | } |
---|
627 | } |
---|
628 | CATCH_DUMP_ATTR |
---|
629 | |
---|
630 | void CAxis::parse(xml::CXMLNode & node) |
---|
631 | TRY |
---|
632 | { |
---|
633 | SuperClass::parse(node); |
---|
634 | |
---|
635 | if (node.goToChildElement()) |
---|
636 | { |
---|
637 | StdString nodeElementName; |
---|
638 | do |
---|
639 | { |
---|
640 | StdString nodeId(""); |
---|
641 | if (node.getAttributes().end() != node.getAttributes().find("id")) |
---|
642 | { nodeId = node.getAttributes()["id"]; } |
---|
643 | |
---|
644 | nodeElementName = node.getElementName(); |
---|
645 | std::map<StdString, ETranformationType>::const_iterator ite = transformationMapList_.end(), it; |
---|
646 | it = transformationMapList_.find(nodeElementName); |
---|
647 | if (ite != it) |
---|
648 | { |
---|
649 | transformationMap_.push_back(std::make_pair(it->second, CTransformation<CAxis>::createTransformation(it->second, |
---|
650 | nodeId, |
---|
651 | &node))); |
---|
652 | } |
---|
653 | else |
---|
654 | { |
---|
655 | ERROR("void CAxis::parse(xml::CXMLNode & node)", |
---|
656 | << "The transformation " << nodeElementName << " has not been supported yet."); |
---|
657 | } |
---|
658 | } while (node.goToNextElement()) ; |
---|
659 | node.goToParentElement(); |
---|
660 | } |
---|
661 | } |
---|
662 | CATCH_DUMP_ATTR |
---|
663 | |
---|
664 | |
---|
665 | ////////////////////////////////////////////////////////////////////////////////////// |
---|
666 | // this part is related to distribution, element definition, views and connectors // |
---|
667 | ////////////////////////////////////////////////////////////////////////////////////// |
---|
668 | |
---|
669 | void CAxis::initializeLocalElement(void) |
---|
670 | { |
---|
671 | // after checkAttribute index of size n |
---|
672 | int rank = CContext::getCurrent()->getIntraCommRank() ; |
---|
673 | |
---|
674 | CArray<size_t,1> ind(n) ; |
---|
675 | for (int i=0;i<n;i++) ind(i)=index(i) ; |
---|
676 | |
---|
677 | localElement_ = new CLocalElement(rank, n_glo, ind) ; |
---|
678 | } |
---|
679 | |
---|
680 | void CAxis::addFullView(void) |
---|
681 | { |
---|
682 | CArray<int,1> index(n) ; |
---|
683 | for(int i=0; i<n ; i++) index(i)=i ; |
---|
684 | localElement_ -> addView(CElementView::FULL, index) ; |
---|
685 | } |
---|
686 | |
---|
687 | void CAxis::addWorkflowView(void) |
---|
688 | { |
---|
689 | // mask + data are included into data_index |
---|
690 | int nk=data_index.numElements() ; |
---|
691 | int nMask=0 ; |
---|
692 | for(int k=0;k<nk;k++) if (data_index(k)>=0 && data_index(k)<n) nMask++ ; |
---|
693 | |
---|
694 | CArray<int,1> index(nMask) ; |
---|
695 | nMask=0 ; |
---|
696 | for(int k=0;k<nk;k++) |
---|
697 | if (data_index(k)>=0 && data_index(k)<n) |
---|
698 | { |
---|
699 | index(nMask) = data_index(k) ; |
---|
700 | nMask++ ; |
---|
701 | } |
---|
702 | localElement_ -> addView(CElementView::WORKFLOW, index) ; |
---|
703 | } |
---|
704 | |
---|
705 | void CAxis::addModelView(void) |
---|
706 | { |
---|
707 | // information for model view is stored in data_index |
---|
708 | localElement_->addView(CElementView::MODEL, data_index) ; |
---|
709 | } |
---|
710 | |
---|
711 | void CAxis::computeModelToWorkflowConnector(void) |
---|
712 | { |
---|
713 | CLocalView* srcView=getLocalView(CElementView::MODEL) ; |
---|
714 | CLocalView* dstView=getLocalView(CElementView::WORKFLOW) ; |
---|
715 | modelToWorkflowConnector_ = new CLocalConnector(srcView, dstView); |
---|
716 | modelToWorkflowConnector_->computeConnector() ; |
---|
717 | } |
---|
718 | |
---|
719 | |
---|
720 | void CAxis::computeRemoteElement(CContextClient* client, EDistributionType type) |
---|
721 | { |
---|
722 | CContext* context = CContext::getCurrent(); |
---|
723 | map<int, CArray<size_t,1>> globalIndex ; |
---|
724 | |
---|
725 | if (type==EDistributionType::BANDS) // Bands distribution to send to file server |
---|
726 | { |
---|
727 | int nbServer = client->serverSize; |
---|
728 | int nbClient = client->clientSize ; |
---|
729 | int rankClient = client->clientRank ; |
---|
730 | int size = nbServer / nbClient ; |
---|
731 | int start ; |
---|
732 | if (nbServer%nbClient > rankClient) |
---|
733 | { |
---|
734 | start = (size+1) * rankClient ; |
---|
735 | size++ ; |
---|
736 | } |
---|
737 | else start = size*rankClient + nbServer%nbClient ; |
---|
738 | |
---|
739 | for(int i=0; i<size; i++) |
---|
740 | { |
---|
741 | int rank=start+i ; |
---|
742 | size_t indSize = n_glo/nbServer ; |
---|
743 | size_t indStart ; |
---|
744 | if (n_glo % nbServer > rank) |
---|
745 | { |
---|
746 | indStart = (indSize+1) * rank ; |
---|
747 | indSize++ ; |
---|
748 | } |
---|
749 | else indStart = indSize*rank + n_glo%nbServer ; |
---|
750 | |
---|
751 | auto& globalInd = globalIndex[rank] ; |
---|
752 | globalInd.resize(indSize) ; |
---|
753 | for(size_t n = 0 ; n<indSize; n++) globalInd(n)=indStart+n ; |
---|
754 | } |
---|
755 | } |
---|
756 | else if (type==EDistributionType::NONE) // domain is not distributed ie all servers get the same local domain |
---|
757 | { |
---|
758 | int nbServer = client->serverSize; |
---|
759 | size_t nglo=n_glo ; |
---|
760 | CArray<size_t,1> indGlo(nglo) ; |
---|
761 | for(size_t i=0;i<nglo;i++) indGlo(i) = i ; |
---|
762 | for (auto& rankServer : client->getRanksServerLeader()) globalIndex[rankServer].reference(indGlo.copy()); |
---|
763 | } |
---|
764 | remoteElement_[client] = new CDistributedElement(n_glo, globalIndex) ; |
---|
765 | remoteElement_[client]->addFullView() ; |
---|
766 | } |
---|
767 | |
---|
768 | void CAxis::distributeToServer(CContextClient* client, std::map<int, CArray<size_t,1>>& globalIndex, |
---|
769 | CScattererConnector* &scattererConnector, const string& axisId) |
---|
770 | { |
---|
771 | string serverAxisId = axisId.empty() ? this->getId() : axisId ; |
---|
772 | CContext* context = CContext::getCurrent(); |
---|
773 | |
---|
774 | this->sendAllAttributesToServer(client, serverAxisId) ; |
---|
775 | |
---|
776 | CDistributedElement scatteredElement(n_glo,globalIndex) ; |
---|
777 | scatteredElement.addFullView() ; |
---|
778 | scattererConnector = new CScattererConnector(localElement_->getView(CElementView::FULL), scatteredElement.getView(CElementView::FULL), |
---|
779 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
780 | scattererConnector->computeConnector() ; |
---|
781 | |
---|
782 | // phase 0 |
---|
783 | // send remote element to construct the full view on server, ie without hole |
---|
784 | CEventClient event0(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
785 | CMessage message0 ; |
---|
786 | message0<<serverAxisId<<0 ; |
---|
787 | remoteElement_[client]->sendToServer(client,event0,message0) ; |
---|
788 | |
---|
789 | // phase 1 |
---|
790 | // send the full view of element to construct the connector which connect distributed data coming from client to the full local view |
---|
791 | CEventClient event1(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
792 | CMessage message1 ; |
---|
793 | message1<<serverAxisId<<1<<localElement_->getView(CElementView::FULL)->getGlobalSize() ; |
---|
794 | scattererConnector->transfer(localElement_->getView(CElementView::FULL)->getGlobalIndex(),client,event1,message1) ; |
---|
795 | |
---|
796 | sendDistributedAttributes(client, *scattererConnector, axisId) ; |
---|
797 | |
---|
798 | // phase 2 send the mask : data index + mask2D |
---|
799 | CArray<bool,1> maskIn(localElement_->getView(CElementView::WORKFLOW)->getSize()); |
---|
800 | CArray<bool,1> maskOut ; |
---|
801 | CLocalConnector workflowToFull(localElement_->getView(CElementView::WORKFLOW), localElement_->getView(CElementView::FULL)) ; |
---|
802 | workflowToFull.computeConnector() ; |
---|
803 | maskIn=true ; |
---|
804 | workflowToFull.transfer(maskIn,maskOut,false) ; |
---|
805 | |
---|
806 | // phase 3 : prepare grid scatterer connector to send data from client to server |
---|
807 | map<int,CArray<size_t,1>> workflowGlobalIndex ; |
---|
808 | map<int,CArray<bool,1>> maskOut2 ; |
---|
809 | scattererConnector->transfer(maskOut, maskOut2) ; |
---|
810 | scatteredElement.addView(CElementView::WORKFLOW, maskOut2) ; |
---|
811 | scatteredElement.getView(CElementView::WORKFLOW)->getGlobalIndexView(workflowGlobalIndex) ; |
---|
812 | // create new workflow view for scattered element |
---|
813 | CDistributedElement clientToServerElement(scatteredElement.getGlobalSize(), workflowGlobalIndex) ; |
---|
814 | clientToServerElement.addFullView() ; |
---|
815 | CEventClient event2(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
816 | CMessage message2 ; |
---|
817 | message2<<serverAxisId<<2 ; |
---|
818 | clientToServerElement.sendToServer(client, event2, message2) ; |
---|
819 | clientToServerConnector_[client] = new CScattererConnector(localElement_->getView(CElementView::WORKFLOW), clientToServerElement.getView(CElementView::FULL), |
---|
820 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
821 | clientToServerConnector_[client]->computeConnector() ; |
---|
822 | |
---|
823 | clientFromServerConnector_[client] = new CGathererConnector(clientToServerElement.getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)); |
---|
824 | clientFromServerConnector_[client]->computeConnector() ; |
---|
825 | |
---|
826 | |
---|
827 | } |
---|
828 | |
---|
829 | void CAxis::recvAxisDistribution(CEventServer& event) |
---|
830 | TRY |
---|
831 | { |
---|
832 | string axisId; |
---|
833 | int phasis ; |
---|
834 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> axisId >> phasis ; |
---|
835 | get(axisId)->receivedAxisDistribution(event, phasis); |
---|
836 | } |
---|
837 | CATCH |
---|
838 | |
---|
839 | |
---|
840 | void CAxis::receivedAxisDistribution(CEventServer& event, int phasis) |
---|
841 | TRY |
---|
842 | { |
---|
843 | CContext* context = CContext::getCurrent(); |
---|
844 | if (phasis==0) // receive the remote element to construct the full view |
---|
845 | { |
---|
846 | localElement_ = new CLocalElement(context->getIntraCommRank(),event) ; |
---|
847 | localElement_->addFullView() ; |
---|
848 | // construct the local dimension and indexes |
---|
849 | auto& globalIndex=localElement_->getGlobalIndex() ; |
---|
850 | int nk=globalIndex.numElements() ; |
---|
851 | int minK=n_glo,maxK=-1 ; |
---|
852 | int nGlo=n_glo ; |
---|
853 | int indGlo ; |
---|
854 | for(int k=0;k<nk;k++) |
---|
855 | { |
---|
856 | indGlo=globalIndex(k) ; |
---|
857 | if (indGlo<minK) minK=indGlo ; |
---|
858 | if (indGlo>maxK) maxK=indGlo ; |
---|
859 | } |
---|
860 | if (maxK>=minK) { begin=minK ; n=maxK-minK+1 ; } |
---|
861 | else {begin=0; n=0 ;} |
---|
862 | |
---|
863 | } |
---|
864 | else if (phasis==1) // receive the sent view from client to construct the full distributed full view on server |
---|
865 | { |
---|
866 | CContext* context = CContext::getCurrent(); |
---|
867 | CDistributedElement* elementFrom = new CDistributedElement(event) ; |
---|
868 | elementFrom->addFullView() ; |
---|
869 | gathererConnector_ = new CGathererConnector(elementFrom->getView(CElementView::FULL), localElement_->getView(CElementView::FULL)) ; |
---|
870 | gathererConnector_->computeConnector() ; |
---|
871 | } |
---|
872 | else if (phasis==2) |
---|
873 | { |
---|
874 | // delete gathererConnector_ ; |
---|
875 | elementFrom_ = new CDistributedElement(event) ; |
---|
876 | elementFrom_->addFullView() ; |
---|
877 | // gathererConnector_ = new CGathererConnector(elementFrom_->getView(CElementView::FULL), localElement_->getView(CElementView::FULL)) ; |
---|
878 | // gathererConnector_ -> computeConnector() ; |
---|
879 | } |
---|
880 | |
---|
881 | } |
---|
882 | CATCH |
---|
883 | |
---|
884 | void CAxis::setServerMask(CArray<bool,1>& serverMask, CContextClient* client) |
---|
885 | TRY |
---|
886 | { |
---|
887 | CContext* context = CContext::getCurrent(); |
---|
888 | localElement_->addView(CElementView::WORKFLOW, serverMask) ; |
---|
889 | mask.reference(serverMask.copy()) ; |
---|
890 | |
---|
891 | serverFromClientConnector_ = new CGathererConnector(elementFrom_->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)) ; |
---|
892 | serverFromClientConnector_->computeConnector() ; |
---|
893 | |
---|
894 | serverToClientConnector_ = new CScattererConnector(localElement_->getView(CElementView::WORKFLOW), elementFrom_->getView(CElementView::FULL), |
---|
895 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
896 | serverToClientConnector_->computeConnector() ; |
---|
897 | } |
---|
898 | CATCH_DUMP_ATTR |
---|
899 | |
---|
900 | void CAxis::sendDistributedAttributes(CContextClient* client, CScattererConnector& scattererConnector, const string& axisId) |
---|
901 | { |
---|
902 | string serverAxisId = axisId.empty() ? this->getId() : axisId ; |
---|
903 | CContext* context = CContext::getCurrent(); |
---|
904 | |
---|
905 | if (hasValue) |
---|
906 | { |
---|
907 | { // send level value |
---|
908 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
909 | CMessage message ; |
---|
910 | message<<serverAxisId<<string("value") ; |
---|
911 | scattererConnector.transfer(value, client, event,message) ; |
---|
912 | } |
---|
913 | } |
---|
914 | |
---|
915 | if (hasBounds) |
---|
916 | { |
---|
917 | { // send bounds level value |
---|
918 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
919 | CMessage message ; |
---|
920 | message<<serverAxisId<<string("bounds") ; |
---|
921 | scattererConnector.transfer(2, bounds, client, event,message) ; |
---|
922 | } |
---|
923 | } |
---|
924 | |
---|
925 | if (hasLabel) |
---|
926 | { |
---|
927 | { // send label |
---|
928 | // need to transform array of string (no fixed size for string) into array of array of char |
---|
929 | // to use connector to transfer |
---|
930 | // the strings must have fixed size which the maximum lenght over the string label. |
---|
931 | int maxSize=0 ; |
---|
932 | for(int i=0; i<label.numElements();i++) |
---|
933 | if (maxSize < label(i).size()) maxSize=label(i).size() ; |
---|
934 | MPI_Allreduce(MPI_IN_PLACE, &maxSize,1,MPI_INT,MPI_MAX, context->getIntraComm()) ; |
---|
935 | maxSize=maxSize+1 ; |
---|
936 | CArray<char,2> charArray(maxSize,label.numElements()) ; |
---|
937 | for(int j=0; j<label.numElements();j++) |
---|
938 | { |
---|
939 | const char* str = label(j).c_str() ; |
---|
940 | int strSize=label(j).size()+1 ; |
---|
941 | for(int i=0; i<strSize; i++) charArray(i,j) = str[i] ; |
---|
942 | } |
---|
943 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
944 | CMessage message ; |
---|
945 | message<<serverAxisId<<string("label")<<maxSize ; |
---|
946 | scattererConnector.transfer(maxSize, charArray, client, event,message) ; |
---|
947 | } |
---|
948 | } |
---|
949 | } |
---|
950 | |
---|
951 | void CAxis::recvDistributedAttributes(CEventServer& event) |
---|
952 | TRY |
---|
953 | { |
---|
954 | string axisId; |
---|
955 | string type ; |
---|
956 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> axisId >> type ; |
---|
957 | get(axisId)->recvDistributedAttributes(event, type); |
---|
958 | } |
---|
959 | CATCH |
---|
960 | |
---|
961 | void CAxis::recvDistributedAttributes(CEventServer& event, const string& type) |
---|
962 | TRY |
---|
963 | { |
---|
964 | if (type=="value") |
---|
965 | { |
---|
966 | gathererConnector_->transfer(event, value, 0.); |
---|
967 | } |
---|
968 | else if (type=="bounds") |
---|
969 | { |
---|
970 | CArray<double,1> value ; |
---|
971 | gathererConnector_->transfer(event, 2, value, 0.); |
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972 | bounds.resize(2,n) ; |
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973 | if (bounds.numElements() > 0 ) bounds=CArray<double,2>(value.dataFirst(),shape(2,n),neverDeleteData) ; |
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974 | } |
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975 | else if (type=="label") |
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976 | { |
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977 | int maxSize ; |
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978 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> maxSize ; |
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979 | CArray<char,1> value ; |
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980 | gathererConnector_->transfer(event, maxSize, value, '\0'); |
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981 | CArray<char,2> charArray(maxSize,n) ; |
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982 | label.resize(n) ; |
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983 | if (n>0) |
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984 | { |
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985 | charArray=CArray<char,2>(value.dataFirst(),shape(maxSize,n),neverDeleteData) ; |
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986 | for(int j=0;j<n;j++) |
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987 | { |
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988 | int strSize ; |
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989 | for(int i=0;i<maxSize;i++) |
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990 | if (charArray(i,j)=='\0') { strSize=i ; break; } |
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991 | string str(strSize,'\0') ; |
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992 | for(int i=0;i<strSize;i++) str[i]=charArray(i,j) ; |
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993 | label(j)=str ; |
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994 | } |
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995 | } |
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996 | } |
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997 | } |
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998 | CATCH |
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999 | |
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1000 | DEFINE_REF_FUNC(Axis,axis) |
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1001 | |
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1002 | ///--------------------------------------------------------------- |
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1003 | |
---|
1004 | } // namespace xios |
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