[219] | 1 | #include "nc4_data_output.hpp" |
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| 2 | |
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| 3 | #include <boost/lexical_cast.hpp> |
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[352] | 4 | #include "attribute_template.hpp" |
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| 5 | #include "group_template.hpp" |
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[219] | 6 | |
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| 7 | #include "file.hpp" |
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| 8 | #include "calendar.hpp" |
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[278] | 9 | #include "context.hpp" |
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[300] | 10 | #include "context_server.hpp" |
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[498] | 11 | #include "netCdfException.hpp" |
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| 12 | #include "exception.hpp" |
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[1158] | 13 | #include "timer.hpp" |
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| 14 | #include "uuid.hpp" |
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[335] | 15 | namespace xios |
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[219] | 16 | { |
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[878] | 17 | /// ////////////////////// Dfinitions ////////////////////// /// |
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[219] | 18 | CNc4DataOutput::CNc4DataOutput |
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[1158] | 19 | (CFile* file, const StdString & filename, bool exist) |
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[219] | 20 | : SuperClass() |
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| 21 | , SuperClassWriter(filename, exist) |
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| 22 | , filename(filename) |
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[1158] | 23 | , file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none) |
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[219] | 24 | { |
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[1158] | 25 | SuperClass::type = MULTI_FILE; |
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[219] | 26 | } |
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| 27 | |
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| 28 | CNc4DataOutput::CNc4DataOutput |
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[1158] | 29 | (CFile* file, const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention, |
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[924] | 30 | MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName) |
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[219] | 31 | : SuperClass() |
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[878] | 32 | , SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName) |
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[379] | 33 | , comm_file(comm_file) |
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[219] | 34 | , filename(filename) |
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[335] | 35 | , isCollective(isCollective) |
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[1158] | 36 | , file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none) |
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[219] | 37 | { |
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[1158] | 38 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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[219] | 39 | } |
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| 40 | |
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| 41 | CNc4DataOutput::~CNc4DataOutput(void) |
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[879] | 42 | { /* Ne rien faire de plus */ } |
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[219] | 43 | |
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| 44 | ///-------------------------------------------------------------- |
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| 45 | |
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| 46 | const StdString & CNc4DataOutput::getFileName(void) const |
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| 47 | { |
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| 48 | return (this->filename); |
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| 49 | } |
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| 50 | |
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| 51 | //--------------------------------------------------------------- |
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| 52 | |
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[347] | 53 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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[219] | 54 | { |
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[1129] | 55 | domain->computeWrittenIndex(); |
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[881] | 56 | if (domain->type == CDomain::type_attr::unstructured) |
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| 57 | { |
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| 58 | if (SuperClassWriter::useCFConvention) |
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| 59 | writeUnstructuredDomain(domain) ; |
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| 60 | else |
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| 61 | writeUnstructuredDomainUgrid(domain) ; |
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| 62 | return ; |
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| 63 | } |
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[488] | 64 | |
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[347] | 65 | CContext* context = CContext::getCurrent() ; |
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[300] | 66 | CContextServer* server=context->server ; |
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[488] | 67 | |
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[219] | 68 | if (domain->IsWritten(this->filename)) return; |
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| 69 | domain->checkAttributes(); |
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[488] | 70 | |
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| 71 | if (domain->isEmpty()) |
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[881] | 72 | if (SuperClass::type==MULTI_FILE) return; |
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[219] | 73 | |
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| 74 | std::vector<StdString> dim0, dim1; |
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[772] | 75 | StdString domid = domain->getDomainOutputName(); |
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[318] | 76 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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[706] | 77 | if (isWrittenDomain(domid)) return ; |
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[774] | 78 | else setWrittenDomain(domid); |
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[1132] | 79 | |
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| 80 | int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex; |
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[449] | 81 | |
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[488] | 82 | |
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[1158] | 83 | StdString dimXid, dimYid ; |
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| 84 | |
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| 85 | nc_type typePrec ; |
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| 86 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
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| 87 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
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| 88 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
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| 89 | |
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[664] | 90 | bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear); |
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[449] | 91 | switch (domain->type) |
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[433] | 92 | { |
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[449] | 93 | case CDomain::type_attr::curvilinear : |
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| 94 | dimXid = StdString("x").append(appendDomid); |
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| 95 | dimYid = StdString("y").append(appendDomid); |
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| 96 | break ; |
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[664] | 97 | case CDomain::type_attr::rectilinear : |
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[449] | 98 | dimXid = StdString("lon").append(appendDomid); |
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| 99 | dimYid = StdString("lat").append(appendDomid); |
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| 100 | break; |
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[488] | 101 | } |
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| 102 | |
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[617] | 103 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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| 104 | |
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[449] | 105 | string lonid,latid,bounds_lonid,bounds_latid ; |
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[611] | 106 | string areaId = "area" + appendDomid; |
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[391] | 107 | /* |
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[300] | 108 | StdString lonid_loc = (server->intraCommSize > 1) |
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[318] | 109 | ? StdString("lon").append(appendDomid).append("_local") |
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[278] | 110 | : lonid; |
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[300] | 111 | StdString latid_loc = (server->intraCommSize > 1) |
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[318] | 112 | ? StdString("lat").append(appendDomid).append("_local") |
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[278] | 113 | : latid; |
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[391] | 114 | */ |
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[219] | 115 | |
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[1129] | 116 | CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
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| 117 | int nbWritten = indexToWrite.numElements(); |
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| 118 | CArray<double,1> writtenLat, writtenLon; |
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| 119 | CArray<double,2> writtenBndsLat, writtenBndsLon; |
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| 120 | CArray<double,1> writtenArea; |
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| 121 | |
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| 122 | if (domain->hasLonLat) |
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| 123 | { |
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| 124 | writtenLat.resize(nbWritten); |
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| 125 | writtenLon.resize(nbWritten); |
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| 126 | for (int idx = 0; idx < nbWritten; ++idx) |
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| 127 | { |
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| 128 | writtenLat(idx) = domain->latvalue(indexToWrite(idx)); |
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| 129 | writtenLon(idx) = domain->lonvalue(indexToWrite(idx)); |
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| 130 | } |
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| 131 | |
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| 132 | |
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| 133 | if (domain->hasBounds) |
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| 134 | { |
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| 135 | int nvertex = domain->nvertex, idx; |
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| 136 | writtenBndsLat.resize(nvertex, nbWritten); |
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| 137 | writtenBndsLon.resize(nvertex, nbWritten); |
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| 138 | CArray<double,2>& boundslat = domain->bounds_latvalue; |
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| 139 | CArray<double,2>& boundslon = domain->bounds_lonvalue; |
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| 140 | for (idx = 0; idx < nbWritten; ++idx) |
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| 141 | for (int nv = 0; nv < nvertex; ++nv) |
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| 142 | { |
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| 143 | writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx))); |
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| 144 | writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx))); |
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| 145 | } |
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| 146 | } |
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| 147 | } |
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| 148 | |
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| 149 | if (domain->hasArea) |
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| 150 | { |
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| 151 | writtenArea.resize(nbWritten); |
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| 152 | for (int idx = 0; idx < nbWritten; ++idx) |
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| 153 | { |
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| 154 | writtenArea(idx) = domain->areavalue(indexToWrite(idx)); |
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| 155 | } |
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| 156 | } |
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| 157 | |
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[498] | 158 | try |
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[219] | 159 | { |
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[498] | 160 | switch (SuperClass::type) |
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| 161 | { |
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| 162 | case (MULTI_FILE) : |
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| 163 | { |
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| 164 | // if (domain->isEmpty()) return; |
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[488] | 165 | |
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[498] | 166 | if (server->intraCommSize > 1) |
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| 167 | { |
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| 168 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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| 169 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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| 170 | } |
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[286] | 171 | |
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[498] | 172 | switch (domain->type) |
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| 173 | { |
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| 174 | case CDomain::type_attr::curvilinear : |
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| 175 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 176 | lonid = StdString("nav_lon").append(appendDomid); |
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| 177 | latid = StdString("nav_lat").append(appendDomid); |
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| 178 | break ; |
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[664] | 179 | case CDomain::type_attr::rectilinear : |
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[498] | 180 | lonid = StdString("lon").append(appendDomid); |
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| 181 | latid = StdString("lat").append(appendDomid); |
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| 182 | dim0.push_back(dimYid); |
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| 183 | dim1.push_back(dimXid); |
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| 184 | break; |
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| 185 | } |
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[488] | 186 | |
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[617] | 187 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 188 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 189 | |
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[1099] | 190 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni); |
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| 191 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj); |
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[488] | 192 | |
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[617] | 193 | if (domain->hasBounds) |
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| 194 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 195 | |
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[498] | 196 | if (server->intraCommSize > 1) |
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| 197 | { |
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[1099] | 198 | this->writeLocalAttributes(domain->zoom_ibegin, |
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| 199 | domain->zoom_ni, |
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| 200 | domain->zoom_jbegin, |
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| 201 | domain->zoom_nj, |
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[616] | 202 | appendDomid); |
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[488] | 203 | |
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[628] | 204 | if (singleDomain) |
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| 205 | this->writeLocalAttributes_IOIPSL(dimXid, dimYid, |
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[1099] | 206 | domain->zoom_ibegin, |
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| 207 | domain->zoom_ni, |
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| 208 | domain->zoom_jbegin, |
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| 209 | domain->zoom_nj, |
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[628] | 210 | domain->ni_glo,domain->nj_glo, |
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| 211 | server->intraCommRank,server->intraCommSize); |
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[449] | 212 | } |
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[488] | 213 | |
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[665] | 214 | if (domain->hasLonLat) |
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[498] | 215 | { |
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[665] | 216 | switch (domain->type) |
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| 217 | { |
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| 218 | case CDomain::type_attr::curvilinear : |
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[1158] | 219 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
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| 220 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
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[665] | 221 | break ; |
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| 222 | case CDomain::type_attr::rectilinear : |
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[1158] | 223 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
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| 224 | SuperClassWriter::addVariable(lonid, typePrec, dim1); |
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[665] | 225 | break ; |
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| 226 | } |
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[488] | 227 | |
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[665] | 228 | this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 229 | this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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[219] | 230 | |
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[665] | 231 | if (domain->hasBounds) |
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| 232 | { |
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| 233 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 234 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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[617] | 235 | |
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[665] | 236 | dim0.clear(); |
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| 237 | dim0.push_back(dimYid); |
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| 238 | dim0.push_back(dimXid); |
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| 239 | dim0.push_back(dimVertId); |
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[1158] | 240 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
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| 241 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
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[665] | 242 | } |
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[617] | 243 | } |
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| 244 | |
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[498] | 245 | dim0.clear(); |
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[616] | 246 | dim0.push_back(dimYid); |
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[498] | 247 | dim0.push_back(dimXid); |
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[219] | 248 | |
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| 249 | |
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[498] | 250 | // supress mask if (server->intraCommSize > 1) |
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| 251 | // supress mask { |
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| 252 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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| 253 | // supress mask |
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| 254 | // supress mask this->writeMaskAttributes(maskid, |
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| 255 | // supress mask domain->data_dim.getValue()/*, |
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| 256 | // supress mask domain->data_ni.getValue(), |
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| 257 | // supress mask domain->data_nj.getValue(), |
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| 258 | // supress mask domain->data_ibegin.getValue(), |
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| 259 | // supress mask domain->data_jbegin.getValue()*/); |
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| 260 | // supress mask } |
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[488] | 261 | |
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[498] | 262 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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[219] | 263 | |
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[611] | 264 | if (domain->hasArea) |
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| 265 | { |
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[1158] | 266 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
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[614] | 267 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 268 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 269 | } |
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| 270 | |
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[498] | 271 | SuperClassWriter::definition_end(); |
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[449] | 272 | |
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[665] | 273 | if (domain->hasLonLat) |
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[498] | 274 | { |
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[665] | 275 | switch (domain->type) |
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| 276 | { |
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[1129] | 277 | case CDomain::type_attr::curvilinear : |
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| 278 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0); |
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| 279 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0); |
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[665] | 280 | break; |
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| 281 | case CDomain::type_attr::rectilinear : |
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[1129] | 282 | CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)) ; |
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[665] | 283 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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[1129] | 284 | CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)) ; |
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[665] | 285 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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| 286 | break; |
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| 287 | } |
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[611] | 288 | |
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[665] | 289 | if (domain->hasBounds) |
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| 290 | { |
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[1129] | 291 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0); |
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| 292 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0); |
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[665] | 293 | } |
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[617] | 294 | } |
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| 295 | |
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[611] | 296 | if (domain->hasArea) |
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[1129] | 297 | { |
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[1132] | 298 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0); |
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[1129] | 299 | } |
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| 300 | |
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[498] | 301 | SuperClassWriter::definition_start(); |
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[219] | 302 | |
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[498] | 303 | break; |
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| 304 | } |
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| 305 | case (ONE_FILE) : |
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| 306 | { |
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[1099] | 307 | SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni); |
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| 308 | SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj); |
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[286] | 309 | |
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[617] | 310 | if (domain->hasBounds) |
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| 311 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 312 | |
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[665] | 313 | if (domain->hasLonLat) |
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[498] | 314 | { |
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[665] | 315 | switch (domain->type) |
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| 316 | { |
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| 317 | case CDomain::type_attr::curvilinear : |
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| 318 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 319 | lonid = StdString("nav_lon").append(appendDomid); |
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| 320 | latid = StdString("nav_lat").append(appendDomid); |
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[1158] | 321 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
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| 322 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
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[665] | 323 | break; |
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[449] | 324 | |
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[665] | 325 | case CDomain::type_attr::rectilinear : |
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| 326 | dim0.push_back(dimYid); |
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| 327 | dim1.push_back(dimXid); |
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| 328 | lonid = StdString("lon").append(appendDomid); |
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| 329 | latid = StdString("lat").append(appendDomid); |
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[1158] | 330 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
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| 331 | SuperClassWriter::addVariable(lonid, typePrec, dim1); |
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[665] | 332 | break; |
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| 333 | } |
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| 334 | |
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| 335 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 336 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 337 | |
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| 338 | this->writeAxisAttributes |
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| 339 | (lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 340 | this->writeAxisAttributes |
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| 341 | (latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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| 342 | |
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| 343 | if (domain->hasBounds) |
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| 344 | { |
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| 345 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 346 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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| 347 | |
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| 348 | dim0.clear(); |
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[498] | 349 | dim0.push_back(dimYid); |
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[665] | 350 | dim0.push_back(dimXid); |
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| 351 | dim0.push_back(dimVertId); |
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[1158] | 352 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
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| 353 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
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[665] | 354 | } |
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[498] | 355 | } |
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[611] | 356 | |
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| 357 | if (domain->hasArea) |
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| 358 | { |
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| 359 | dim0.clear(); |
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| 360 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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[1158] | 361 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
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[614] | 362 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 363 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 364 | dim0.clear(); |
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| 365 | } |
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| 366 | |
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| 367 | SuperClassWriter::definition_end(); |
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[286] | 368 | |
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[498] | 369 | switch (domain->type) |
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[384] | 370 | { |
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[498] | 371 | case CDomain::type_attr::curvilinear : |
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[449] | 372 | { |
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[498] | 373 | std::vector<StdSize> start(2) ; |
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| 374 | std::vector<StdSize> count(2) ; |
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| 375 | if (domain->isEmpty()) |
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| 376 | { |
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[611] | 377 | start[0]=0 ; start[1]=0 ; |
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[498] | 378 | count[0]=0 ; count[1]=0 ; |
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| 379 | } |
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| 380 | else |
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| 381 | { |
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[1099] | 382 | start[1]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
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| 383 | start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin; |
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| 384 | count[1]=domain->zoom_ni ; count[0]=domain->zoom_nj ; |
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[498] | 385 | } |
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[488] | 386 | |
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[665] | 387 | if (domain->hasLonLat) |
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| 388 | { |
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[1129] | 389 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
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| 390 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
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[665] | 391 | } |
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[498] | 392 | break; |
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| 393 | } |
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[664] | 394 | case CDomain::type_attr::rectilinear : |
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[449] | 395 | { |
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[665] | 396 | if (domain->hasLonLat) |
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[498] | 397 | { |
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[665] | 398 | std::vector<StdSize> start(1) ; |
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| 399 | std::vector<StdSize> count(1) ; |
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| 400 | if (domain->isEmpty()) |
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| 401 | { |
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| 402 | start[0]=0 ; |
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| 403 | count[0]=0 ; |
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[1129] | 404 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
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| 405 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
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[665] | 406 | } |
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| 407 | else |
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[1129] | 408 | { |
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[1099] | 409 | start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin; |
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[1143] | 410 | count[0]=domain->zoom_nj; |
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[1129] | 411 | CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)); |
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[665] | 412 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
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| 413 | |
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[1099] | 414 | start[0]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
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[1143] | 415 | count[0]=domain->zoom_ni; |
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[1129] | 416 | CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)); |
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[665] | 417 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
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| 418 | } |
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[498] | 419 | } |
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| 420 | break; |
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[449] | 421 | } |
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[384] | 422 | } |
---|
[611] | 423 | |
---|
[617] | 424 | if (domain->hasBounds) |
---|
| 425 | { |
---|
| 426 | std::vector<StdSize> start(3); |
---|
| 427 | std::vector<StdSize> count(3); |
---|
| 428 | if (domain->isEmpty()) |
---|
| 429 | { |
---|
| 430 | start[2] = start[1] = start[0] = 0; |
---|
| 431 | count[2] = count[1] = count[0] = 0; |
---|
| 432 | } |
---|
| 433 | else |
---|
| 434 | { |
---|
| 435 | start[2] = 0; |
---|
[1099] | 436 | start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 437 | start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin; |
---|
| 438 | count[2] = domain->nvertex; |
---|
| 439 | count[1] = domain->zoom_ni; |
---|
| 440 | count[0] = domain->zoom_nj; |
---|
[617] | 441 | } |
---|
[1143] | 442 | |
---|
[1129] | 443 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count); |
---|
| 444 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count); |
---|
[617] | 445 | } |
---|
| 446 | |
---|
[611] | 447 | if (domain->hasArea) |
---|
| 448 | { |
---|
| 449 | std::vector<StdSize> start(2); |
---|
| 450 | std::vector<StdSize> count(2); |
---|
| 451 | |
---|
| 452 | if (domain->isEmpty()) |
---|
| 453 | { |
---|
| 454 | start[0] = 0; start[1] = 0; |
---|
| 455 | count[0] = 0; count[1] = 0; |
---|
| 456 | } |
---|
| 457 | else |
---|
| 458 | { |
---|
[1099] | 459 | start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 460 | start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin; |
---|
| 461 | count[1] = domain->zoom_ni; |
---|
| 462 | count[0] = domain->zoom_nj; |
---|
[611] | 463 | } |
---|
[1143] | 464 | |
---|
[1129] | 465 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count); |
---|
[611] | 466 | } |
---|
| 467 | |
---|
[498] | 468 | SuperClassWriter::definition_start(); |
---|
| 469 | break; |
---|
| 470 | } |
---|
| 471 | default : |
---|
| 472 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 473 | << "[ type = " << SuperClass::type << "]" |
---|
| 474 | << " not implemented yet !"); |
---|
| 475 | } |
---|
[449] | 476 | } |
---|
[498] | 477 | catch (CNetCdfException& e) |
---|
| 478 | { |
---|
| 479 | StdString msg("On writing the domain : "); |
---|
| 480 | msg.append(domid); msg.append("\n"); |
---|
| 481 | msg.append("In the context : "); |
---|
| 482 | msg.append(context->getId()); msg.append("\n"); |
---|
| 483 | msg.append(e.what()); |
---|
| 484 | ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg); |
---|
| 485 | } |
---|
| 486 | |
---|
[449] | 487 | domain->addRelFile(this->filename); |
---|
| 488 | } |
---|
| 489 | |
---|
[879] | 490 | //-------------------------------------------------------------- |
---|
[878] | 491 | |
---|
[879] | 492 | void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain) |
---|
| 493 | { |
---|
| 494 | CContext* context = CContext::getCurrent() ; |
---|
| 495 | CContextServer* server=context->server ; |
---|
[878] | 496 | |
---|
[879] | 497 | if (domain->IsWritten(this->filename)) return; |
---|
| 498 | domain->checkAttributes(); |
---|
| 499 | if (domain->isEmpty()) |
---|
| 500 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[878] | 501 | |
---|
[1158] | 502 | nc_type typePrec ; |
---|
| 503 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 504 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
---|
| 505 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
---|
| 506 | |
---|
[879] | 507 | std::vector<StdString> dim0; |
---|
| 508 | StdString domid = domain->getDomainOutputName(); |
---|
| 509 | StdString domainName = domain->name; |
---|
[924] | 510 | domain->assignMesh(domainName, domain->nvertex); |
---|
[1025] | 511 | domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue); |
---|
[878] | 512 | |
---|
[879] | 513 | StdString node_x = domainName + "_node_x"; |
---|
| 514 | StdString node_y = domainName + "_node_y"; |
---|
[878] | 515 | |
---|
[879] | 516 | StdString edge_x = domainName + "_edge_x"; |
---|
| 517 | StdString edge_y = domainName + "_edge_y"; |
---|
| 518 | StdString edge_nodes = domainName + "_edge_nodes"; |
---|
[878] | 519 | |
---|
[879] | 520 | StdString face_x = domainName + "_face_x"; |
---|
| 521 | StdString face_y = domainName + "_face_y"; |
---|
| 522 | StdString face_nodes = domainName + "_face_nodes"; |
---|
[902] | 523 | StdString face_edges = domainName + "_face_edges"; |
---|
| 524 | StdString edge_faces = domainName + "_edge_face_links"; |
---|
| 525 | StdString face_faces = domainName + "_face_links"; |
---|
[878] | 526 | |
---|
[879] | 527 | StdString dimNode = "n" + domainName + "_node"; |
---|
| 528 | StdString dimEdge = "n" + domainName + "_edge"; |
---|
| 529 | StdString dimFace = "n" + domainName + "_face"; |
---|
| 530 | StdString dimVertex = "n" + domainName + "_vertex"; |
---|
| 531 | StdString dimTwo = "Two"; |
---|
[878] | 532 | |
---|
[879] | 533 | if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2); |
---|
| 534 | if (!isWrittenDomain(domid)) |
---|
| 535 | { |
---|
| 536 | dim0.clear(); |
---|
| 537 | SuperClassWriter::addVariable(domainName, NC_INT, dim0); |
---|
| 538 | SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName); |
---|
[924] | 539 | SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName); |
---|
| 540 | SuperClassWriter::addAttribute("topology_dimension", 2, &domainName); |
---|
[879] | 541 | SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName); |
---|
| 542 | } |
---|
[878] | 543 | |
---|
[879] | 544 | try |
---|
| 545 | { |
---|
| 546 | switch (SuperClass::type) |
---|
| 547 | { |
---|
| 548 | case (ONE_FILE) : |
---|
| 549 | { |
---|
| 550 | // Adding nodes |
---|
| 551 | if (domain->nvertex == 1) |
---|
| 552 | { |
---|
| 553 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 554 | { |
---|
[902] | 555 | SuperClassWriter::addDimension(dimNode, domain->ni_glo); |
---|
[879] | 556 | dim0.clear(); |
---|
| 557 | dim0.push_back(dimNode); |
---|
[1158] | 558 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 559 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 560 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 561 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1158] | 562 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 563 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 564 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 565 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 566 | } |
---|
| 567 | } // domain->nvertex == 1 |
---|
[878] | 568 | |
---|
[879] | 569 | // Adding edges and nodes, if nodes have not been defined previously |
---|
| 570 | if (domain->nvertex == 2) |
---|
| 571 | { |
---|
| 572 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 573 | { |
---|
[924] | 574 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 575 | dim0.clear(); |
---|
| 576 | dim0.push_back(dimNode); |
---|
[1158] | 577 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 578 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 579 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 580 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1158] | 581 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 582 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 583 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 584 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 585 | } |
---|
[924] | 586 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
| 587 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 588 | SuperClassWriter::addDimension(dimEdge, domain->ni_glo); |
---|
| 589 | dim0.clear(); |
---|
| 590 | dim0.push_back(dimEdge); |
---|
[1158] | 591 | SuperClassWriter::addVariable(edge_x, typePrec, dim0); |
---|
[924] | 592 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
| 593 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
| 594 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
[1158] | 595 | SuperClassWriter::addVariable(edge_y, typePrec, dim0); |
---|
[924] | 596 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
| 597 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
| 598 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 599 | dim0.clear(); |
---|
| 600 | dim0.push_back(dimEdge); |
---|
| 601 | dim0.push_back(dimTwo); |
---|
| 602 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 603 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 604 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 605 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
[879] | 606 | } // domain->nvertex == 2 |
---|
[878] | 607 | |
---|
[879] | 608 | // Adding faces, edges, and nodes, if edges and nodes have not been defined previously |
---|
| 609 | if (domain->nvertex > 2) |
---|
| 610 | { |
---|
| 611 | // Nodes |
---|
| 612 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 613 | { |
---|
[924] | 614 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 615 | dim0.clear(); |
---|
| 616 | dim0.push_back(dimNode); |
---|
[1158] | 617 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 618 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 619 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 620 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1158] | 621 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 622 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 623 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 624 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 625 | } |
---|
| 626 | if (!SuperClassWriter::varExist(edge_x) || !SuperClassWriter::varExist(edge_y)) |
---|
| 627 | { |
---|
| 628 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 629 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
[924] | 630 | SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo); |
---|
[879] | 631 | dim0.clear(); |
---|
| 632 | dim0.push_back(dimEdge); |
---|
[1158] | 633 | SuperClassWriter::addVariable(edge_x, typePrec, dim0); |
---|
[879] | 634 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
[924] | 635 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
[879] | 636 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
[1158] | 637 | SuperClassWriter::addVariable(edge_y, typePrec, dim0); |
---|
[879] | 638 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
[924] | 639 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
[879] | 640 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 641 | dim0.clear(); |
---|
| 642 | dim0.push_back(dimEdge); |
---|
| 643 | dim0.push_back(dimTwo); |
---|
| 644 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 645 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 646 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 647 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
| 648 | } |
---|
[924] | 649 | SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName); |
---|
| 650 | SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName); |
---|
| 651 | SuperClassWriter::addDimension(dimFace, domain->ni_glo); |
---|
| 652 | SuperClassWriter::addDimension(dimVertex, domain->nvertex); |
---|
| 653 | dim0.clear(); |
---|
| 654 | dim0.push_back(dimFace); |
---|
[1158] | 655 | SuperClassWriter::addVariable(face_x, typePrec, dim0); |
---|
[924] | 656 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x); |
---|
| 657 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x); |
---|
| 658 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x); |
---|
[1158] | 659 | SuperClassWriter::addVariable(face_y, typePrec, dim0); |
---|
[924] | 660 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y); |
---|
| 661 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y); |
---|
| 662 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y); |
---|
| 663 | dim0.clear(); |
---|
| 664 | dim0.push_back(dimFace); |
---|
| 665 | dim0.push_back(dimVertex); |
---|
| 666 | SuperClassWriter::addVariable(face_nodes, NC_INT, dim0); |
---|
| 667 | SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes); |
---|
| 668 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes); |
---|
| 669 | SuperClassWriter::addAttribute("start_index", 0, &face_nodes); |
---|
| 670 | dim0.clear(); |
---|
| 671 | dim0.push_back(dimFace); |
---|
| 672 | dim0.push_back(dimVertex); |
---|
| 673 | SuperClassWriter::addVariable(face_edges, NC_INT, dim0); |
---|
| 674 | SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges); |
---|
| 675 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges); |
---|
| 676 | SuperClassWriter::addAttribute("start_index", 0, &face_edges); |
---|
[929] | 677 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges); |
---|
[924] | 678 | dim0.clear(); |
---|
| 679 | dim0.push_back(dimEdge); |
---|
| 680 | dim0.push_back(dimTwo); |
---|
| 681 | SuperClassWriter::addVariable(edge_faces, NC_INT, dim0); |
---|
| 682 | SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces); |
---|
| 683 | SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces); |
---|
| 684 | SuperClassWriter::addAttribute("start_index", 0, &edge_faces); |
---|
| 685 | SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces); |
---|
| 686 | SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces); |
---|
| 687 | dim0.clear(); |
---|
| 688 | dim0.push_back(dimFace); |
---|
| 689 | dim0.push_back(dimVertex); |
---|
| 690 | SuperClassWriter::addVariable(face_faces, NC_INT, dim0); |
---|
| 691 | SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces); |
---|
| 692 | SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces); |
---|
| 693 | SuperClassWriter::addAttribute("start_index", 0, &face_faces); |
---|
[929] | 694 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces); |
---|
[924] | 695 | SuperClassWriter::addAttribute("flag_values", -1, &face_faces); |
---|
| 696 | SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces); |
---|
[879] | 697 | } // domain->nvertex > 2 |
---|
[878] | 698 | |
---|
[879] | 699 | SuperClassWriter::definition_end(); |
---|
[878] | 700 | |
---|
[924] | 701 | std::vector<StdSize> startEdges(1) ; |
---|
| 702 | std::vector<StdSize> countEdges(1) ; |
---|
| 703 | std::vector<StdSize> startNodes(1) ; |
---|
| 704 | std::vector<StdSize> countNodes(1) ; |
---|
| 705 | std::vector<StdSize> startFaces(1) ; |
---|
| 706 | std::vector<StdSize> countFaces(1) ; |
---|
| 707 | std::vector<StdSize> startEdgeNodes(2) ; |
---|
| 708 | std::vector<StdSize> countEdgeNodes(2) ; |
---|
| 709 | std::vector<StdSize> startEdgeFaces(2) ; |
---|
| 710 | std::vector<StdSize> countEdgeFaces(2) ; |
---|
| 711 | std::vector<StdSize> startFaceConctv(2) ; |
---|
| 712 | std::vector<StdSize> countFaceConctv(2) ; |
---|
[902] | 713 | |
---|
[879] | 714 | if (!isWrittenDomain(domid)) |
---|
| 715 | { |
---|
| 716 | if (domain->nvertex == 1) |
---|
| 717 | { |
---|
[924] | 718 | if (domain->isEmpty()) |
---|
| 719 | { |
---|
| 720 | startNodes[0]=0 ; |
---|
| 721 | countNodes[0]=0 ; |
---|
| 722 | } |
---|
| 723 | else |
---|
| 724 | { |
---|
[1132] | 725 | startNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 726 | countNodes[0] = domain->zoom_ni ; |
---|
[924] | 727 | } |
---|
| 728 | |
---|
| 729 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 730 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
[879] | 731 | } |
---|
| 732 | else if (domain->nvertex == 2) |
---|
[924] | 733 | { |
---|
| 734 | if (domain->isEmpty()) |
---|
| 735 | { |
---|
| 736 | startEdges[0]=0 ; |
---|
| 737 | countEdges[0]=0 ; |
---|
| 738 | startNodes[0]=0 ; |
---|
| 739 | countNodes[0]=0 ; |
---|
| 740 | startEdgeNodes[0]=0; |
---|
| 741 | startEdgeNodes[1]=0; |
---|
| 742 | countEdgeNodes[0]=0; |
---|
| 743 | countEdgeNodes[1]=0; |
---|
| 744 | |
---|
| 745 | } |
---|
| 746 | else |
---|
| 747 | { |
---|
[1132] | 748 | startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 749 | countEdges[0] = domain->zoom_ni; |
---|
[924] | 750 | startNodes[0] = domain->mesh->node_start; |
---|
| 751 | countNodes[0] = domain->mesh->node_count; |
---|
[1132] | 752 | startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
[924] | 753 | startEdgeNodes[1] = 0; |
---|
[1132] | 754 | countEdgeNodes[0] = domain->zoom_ni; |
---|
| 755 | countEdgeNodes[1] = 2; |
---|
[924] | 756 | } |
---|
| 757 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 758 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 759 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 760 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 761 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 762 | } |
---|
[879] | 763 | else |
---|
| 764 | { |
---|
[924] | 765 | if (domain->isEmpty()) |
---|
| 766 | { |
---|
| 767 | startFaces[0] = 0 ; |
---|
| 768 | countFaces[0] = 0 ; |
---|
| 769 | startNodes[0] = 0; |
---|
| 770 | countNodes[0] = 0; |
---|
| 771 | startEdges[0] = 0; |
---|
| 772 | countEdges[0] = 0; |
---|
| 773 | startEdgeFaces[0] = 0; |
---|
| 774 | startEdgeFaces[1] = 0; |
---|
| 775 | countEdgeFaces[0] = 0; |
---|
| 776 | countEdgeFaces[1] = 0; |
---|
| 777 | startFaceConctv[0] = 0; |
---|
| 778 | startFaceConctv[1] = 0; |
---|
| 779 | countFaceConctv[0] = 0; |
---|
| 780 | countFaceConctv[1] = 0; |
---|
| 781 | } |
---|
| 782 | else |
---|
| 783 | { |
---|
[1132] | 784 | startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 785 | countFaces[0] = domain->zoom_ni ; |
---|
[924] | 786 | startNodes[0] = domain->mesh->node_start; |
---|
| 787 | countNodes[0] = domain->mesh->node_count; |
---|
| 788 | startEdges[0] = domain->mesh->edge_start; |
---|
| 789 | countEdges[0] = domain->mesh->edge_count; |
---|
| 790 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 791 | startEdgeNodes[1] = 0; |
---|
| 792 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 793 | countEdgeNodes[1]= 2; |
---|
| 794 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 795 | startEdgeFaces[1]= 0; |
---|
| 796 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 797 | countEdgeFaces[1]= 2; |
---|
[1132] | 798 | startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 799 | startFaceConctv[1] = 0; |
---|
| 800 | countFaceConctv[0] = domain->zoom_ni; |
---|
[924] | 801 | countFaceConctv[1] = domain->nvertex; |
---|
| 802 | } |
---|
| 803 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 804 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 805 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 806 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 807 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 808 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 809 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 810 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 811 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 812 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 813 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 814 | } |
---|
| 815 | setWrittenDomain(domid); |
---|
| 816 | } // !isWrittenDomain |
---|
| 817 | else |
---|
| 818 | { |
---|
| 819 | if (domain->nvertex == 2) |
---|
| 820 | { |
---|
[1132] | 821 | startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 822 | countEdges[0] = domain->zoom_ni; |
---|
| 823 | startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 824 | startEdgeNodes[1] = 0; |
---|
| 825 | countEdgeNodes[0] = domain->zoom_ni; |
---|
[924] | 826 | countEdgeNodes[1]= 2; |
---|
| 827 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 828 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 829 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 830 | } |
---|
| 831 | if (domain->nvertex > 2) |
---|
| 832 | { |
---|
[924] | 833 | |
---|
[879] | 834 | if (!domain->mesh->edgesAreWritten) |
---|
| 835 | { |
---|
[924] | 836 | startEdges[0] = domain->mesh->edge_start; |
---|
| 837 | countEdges[0] = domain->mesh->edge_count; |
---|
| 838 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 839 | startEdgeNodes[1] = 0; |
---|
| 840 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 841 | countEdgeNodes[1]= 2; |
---|
| 842 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 843 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 844 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 845 | } |
---|
[1132] | 846 | startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 847 | countFaces[0] = domain->zoom_ni; |
---|
[924] | 848 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 849 | startEdgeFaces[1]= 0; |
---|
| 850 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 851 | countEdgeFaces[1]= 2; |
---|
[1132] | 852 | startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 853 | startFaceConctv[1] = 0; |
---|
| 854 | countFaceConctv[0] = domain->zoom_ni; |
---|
| 855 | countFaceConctv[1] = domain->nvertex; |
---|
[924] | 856 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 857 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 858 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 859 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 860 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 861 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 862 | } |
---|
| 863 | }// isWrittenDomain |
---|
[878] | 864 | |
---|
[879] | 865 | SuperClassWriter::definition_start(); |
---|
[878] | 866 | |
---|
[879] | 867 | break; |
---|
| 868 | } // ONE_FILE |
---|
[878] | 869 | |
---|
[879] | 870 | case (MULTI_FILE) : |
---|
| 871 | { |
---|
| 872 | break; |
---|
| 873 | } |
---|
[878] | 874 | |
---|
[879] | 875 | default : |
---|
| 876 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 877 | << "[ type = " << SuperClass::type << "]" |
---|
| 878 | << " not implemented yet !"); |
---|
| 879 | } // switch |
---|
| 880 | } // try |
---|
[878] | 881 | |
---|
[879] | 882 | catch (CNetCdfException& e) |
---|
| 883 | { |
---|
| 884 | StdString msg("On writing the domain : "); |
---|
| 885 | msg.append(domid); msg.append("\n"); |
---|
| 886 | msg.append("In the context : "); |
---|
| 887 | msg.append(context->getId()); msg.append("\n"); |
---|
| 888 | msg.append(e.what()); |
---|
[924] | 889 | ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg); |
---|
[879] | 890 | } |
---|
[878] | 891 | |
---|
[879] | 892 | domain->addRelFile(this->filename); |
---|
| 893 | } |
---|
[878] | 894 | |
---|
[879] | 895 | //-------------------------------------------------------------- |
---|
[878] | 896 | |
---|
[879] | 897 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
---|
[449] | 898 | { |
---|
| 899 | CContext* context = CContext::getCurrent() ; |
---|
| 900 | CContextServer* server=context->server ; |
---|
[488] | 901 | |
---|
[449] | 902 | if (domain->IsWritten(this->filename)) return; |
---|
| 903 | domain->checkAttributes(); |
---|
[488] | 904 | |
---|
| 905 | if (domain->isEmpty()) |
---|
[449] | 906 | if (SuperClass::type==MULTI_FILE) return ; |
---|
| 907 | |
---|
| 908 | std::vector<StdString> dim0, dim1; |
---|
[772] | 909 | StdString domid = domain->getDomainOutputName(); |
---|
[705] | 910 | if (isWrittenDomain(domid)) return ; |
---|
[774] | 911 | else setWrittenDomain(domid); |
---|
[705] | 912 | |
---|
[449] | 913 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
| 914 | |
---|
| 915 | StdString dimXid = StdString("cell").append(appendDomid); |
---|
| 916 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
---|
[488] | 917 | |
---|
[449] | 918 | string lonid,latid,bounds_lonid,bounds_latid ; |
---|
[611] | 919 | string areaId = "area" + appendDomid; |
---|
[449] | 920 | |
---|
[1158] | 921 | nc_type typePrec ; |
---|
| 922 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 923 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
---|
| 924 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
---|
| 925 | |
---|
[1132] | 926 | int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex; |
---|
[1025] | 927 | |
---|
[1132] | 928 | CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
---|
| 929 | int nbWritten = indexToWrite.numElements(); |
---|
| 930 | CArray<double,1> writtenLat, writtenLon; |
---|
| 931 | CArray<double,2> writtenBndsLat, writtenBndsLon; |
---|
| 932 | CArray<double,1> writtenArea; |
---|
| 933 | |
---|
| 934 | if (domain->hasLonLat) |
---|
| 935 | { |
---|
| 936 | writtenLat.resize(nbWritten); |
---|
| 937 | writtenLon.resize(nbWritten); |
---|
| 938 | for (int idx = 0; idx < nbWritten; ++idx) |
---|
| 939 | { |
---|
| 940 | writtenLat(idx) = domain->latvalue(indexToWrite(idx)); |
---|
| 941 | writtenLon(idx) = domain->lonvalue(indexToWrite(idx)); |
---|
| 942 | } |
---|
| 943 | |
---|
| 944 | |
---|
| 945 | if (domain->hasBounds) |
---|
| 946 | { |
---|
| 947 | int nvertex = domain->nvertex, idx; |
---|
| 948 | writtenBndsLat.resize(nvertex, nbWritten); |
---|
| 949 | writtenBndsLon.resize(nvertex, nbWritten); |
---|
| 950 | CArray<double,2>& boundslat = domain->bounds_latvalue; |
---|
| 951 | CArray<double,2>& boundslon = domain->bounds_lonvalue; |
---|
| 952 | for (idx = 0; idx < nbWritten; ++idx) |
---|
| 953 | for (int nv = 0; nv < nvertex; ++nv) |
---|
| 954 | { |
---|
| 955 | writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx))); |
---|
| 956 | writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx))); |
---|
| 957 | } |
---|
| 958 | } |
---|
| 959 | } |
---|
| 960 | |
---|
| 961 | if (domain->hasArea) |
---|
| 962 | { |
---|
| 963 | writtenArea.resize(nbWritten); |
---|
| 964 | for (int idx = 0; idx < nbWritten; ++idx) |
---|
| 965 | { |
---|
| 966 | writtenArea(idx) = domain->areavalue(indexToWrite(idx)); |
---|
| 967 | } |
---|
| 968 | } |
---|
| 969 | |
---|
[498] | 970 | try |
---|
[449] | 971 | { |
---|
[498] | 972 | switch (SuperClass::type) |
---|
| 973 | { |
---|
| 974 | case (MULTI_FILE) : |
---|
| 975 | { |
---|
| 976 | dim0.push_back(dimXid); |
---|
[1132] | 977 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni); |
---|
[488] | 978 | |
---|
[665] | 979 | lonid = StdString("lon").append(appendDomid); |
---|
| 980 | latid = StdString("lat").append(appendDomid); |
---|
[498] | 981 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 982 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
[665] | 983 | if (domain->hasLonLat) |
---|
| 984 | { |
---|
[1158] | 985 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 986 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
---|
[665] | 987 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 988 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 989 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 990 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 991 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 992 | } |
---|
[498] | 993 | dim0.clear(); |
---|
| 994 | if (domain->hasBounds) |
---|
| 995 | { |
---|
| 996 | dim0.push_back(dimXid); |
---|
| 997 | dim0.push_back(dimVertId); |
---|
[1158] | 998 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
---|
| 999 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
---|
[498] | 1000 | } |
---|
| 1001 | |
---|
| 1002 | dim0.clear(); |
---|
[449] | 1003 | dim0.push_back(dimXid); |
---|
[611] | 1004 | if (domain->hasArea) |
---|
| 1005 | { |
---|
[1158] | 1006 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
---|
[614] | 1007 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 1008 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 1009 | } |
---|
| 1010 | |
---|
[498] | 1011 | SuperClassWriter::definition_end(); |
---|
[449] | 1012 | |
---|
[665] | 1013 | if (domain->hasLonLat) |
---|
[498] | 1014 | { |
---|
[1132] | 1015 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0); |
---|
| 1016 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0); |
---|
[665] | 1017 | if (domain->hasBounds) |
---|
| 1018 | { |
---|
[1132] | 1019 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0); |
---|
| 1020 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0); |
---|
[665] | 1021 | } |
---|
[498] | 1022 | } |
---|
[611] | 1023 | |
---|
| 1024 | if (domain->hasArea) |
---|
[1132] | 1025 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0); |
---|
[611] | 1026 | |
---|
[498] | 1027 | SuperClassWriter::definition_start(); |
---|
| 1028 | break ; |
---|
| 1029 | } |
---|
[488] | 1030 | |
---|
[498] | 1031 | case (ONE_FILE) : |
---|
| 1032 | { |
---|
| 1033 | lonid = StdString("lon").append(appendDomid); |
---|
| 1034 | latid = StdString("lat").append(appendDomid); |
---|
| 1035 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 1036 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 1037 | dim0.push_back(dimXid); |
---|
[1132] | 1038 | SuperClassWriter::addDimension(dimXid, domain->ni_glo); |
---|
[665] | 1039 | if (domain->hasLonLat) |
---|
| 1040 | { |
---|
[1158] | 1041 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 1042 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
---|
[665] | 1043 | |
---|
| 1044 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 1045 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 1046 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 1047 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
[1025] | 1048 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex); |
---|
[665] | 1049 | } |
---|
[498] | 1050 | dim0.clear(); |
---|
[449] | 1051 | |
---|
[498] | 1052 | if (domain->hasBounds) |
---|
| 1053 | { |
---|
| 1054 | dim0.push_back(dimXid); |
---|
| 1055 | dim0.push_back(dimVertId); |
---|
[1158] | 1056 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
---|
| 1057 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
---|
[498] | 1058 | } |
---|
[488] | 1059 | |
---|
[611] | 1060 | if (domain->hasArea) |
---|
| 1061 | { |
---|
| 1062 | dim0.clear(); |
---|
| 1063 | dim0.push_back(dimXid); |
---|
[1158] | 1064 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
---|
[614] | 1065 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 1066 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 1067 | } |
---|
| 1068 | |
---|
[498] | 1069 | SuperClassWriter::definition_end(); |
---|
[488] | 1070 | |
---|
[498] | 1071 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1072 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
| 1073 | if (domain->isEmpty()) |
---|
| 1074 | { |
---|
| 1075 | start[0]=0 ; |
---|
| 1076 | count[0]=0 ; |
---|
| 1077 | startBounds[1]=0 ; |
---|
[1025] | 1078 | countBounds[1]=nvertex ; |
---|
[498] | 1079 | startBounds[0]=0 ; |
---|
| 1080 | countBounds[0]=0 ; |
---|
| 1081 | } |
---|
| 1082 | else |
---|
| 1083 | { |
---|
[1132] | 1084 | start[0]=domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 1085 | count[0]=domain->zoom_ni; |
---|
| 1086 | startBounds[0]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
[498] | 1087 | startBounds[1]=0 ; |
---|
[1132] | 1088 | countBounds[0]=domain->zoom_ni; |
---|
[1025] | 1089 | countBounds[1]=nvertex ; |
---|
[498] | 1090 | } |
---|
[665] | 1091 | |
---|
| 1092 | if (domain->hasLonLat) |
---|
[498] | 1093 | { |
---|
[1132] | 1094 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
---|
| 1095 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
---|
[665] | 1096 | if (domain->hasBounds) |
---|
| 1097 | { |
---|
[1132] | 1098 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
---|
| 1099 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
---|
[665] | 1100 | } |
---|
[498] | 1101 | } |
---|
[488] | 1102 | |
---|
[611] | 1103 | if (domain->hasArea) |
---|
[1132] | 1104 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count); |
---|
[488] | 1105 | |
---|
[498] | 1106 | SuperClassWriter::definition_start(); |
---|
[488] | 1107 | |
---|
[498] | 1108 | break; |
---|
| 1109 | } |
---|
| 1110 | default : |
---|
| 1111 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 1112 | << "[ type = " << SuperClass::type << "]" |
---|
| 1113 | << " not implemented yet !"); |
---|
| 1114 | } |
---|
[219] | 1115 | } |
---|
[498] | 1116 | catch (CNetCdfException& e) |
---|
| 1117 | { |
---|
| 1118 | StdString msg("On writing the domain : "); |
---|
| 1119 | msg.append(domid); msg.append("\n"); |
---|
| 1120 | msg.append("In the context : "); |
---|
| 1121 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1122 | msg.append(e.what()); |
---|
| 1123 | ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg); |
---|
| 1124 | } |
---|
[219] | 1125 | domain->addRelFile(this->filename); |
---|
| 1126 | } |
---|
| 1127 | //-------------------------------------------------------------- |
---|
| 1128 | |
---|
[347] | 1129 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
---|
[219] | 1130 | { |
---|
[1030] | 1131 | if (axis->IsWritten(this->filename)) return; |
---|
| 1132 | axis->checkAttributes(); |
---|
[488] | 1133 | |
---|
[1129] | 1134 | axis->computeWrittenIndex(); |
---|
| 1135 | |
---|
[1099] | 1136 | int zoom_size = (MULTI_FILE == SuperClass::type) ? axis->zoom_n |
---|
| 1137 | : axis->global_zoom_n; |
---|
| 1138 | int zoom_begin = (MULTI_FILE == SuperClass::type) ? axis->zoom_begin |
---|
| 1139 | : axis->global_zoom_begin; |
---|
| 1140 | |
---|
| 1141 | if ((0 == axis->zoom_n) && (MULTI_FILE == SuperClass::type)) return; |
---|
| 1142 | |
---|
[1030] | 1143 | std::vector<StdString> dims; |
---|
| 1144 | StdString axisid = axis->getAxisOutputName(); |
---|
| 1145 | if (isWrittenAxis(axisid)) return ; |
---|
| 1146 | else setWrittenAxis(axisid); |
---|
[705] | 1147 | |
---|
[1158] | 1148 | nc_type typePrec ; |
---|
| 1149 | if (axis->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 1150 | else if (axis->prec==4) typePrec = NC_FLOAT ; |
---|
| 1151 | else if (axis->prec==8) typePrec = NC_DOUBLE ; |
---|
| 1152 | |
---|
| 1153 | if (!axis->label.isEmpty()) typePrec = NC_CHAR ; |
---|
| 1154 | string strId="str_len" ; |
---|
[1030] | 1155 | try |
---|
| 1156 | { |
---|
[1099] | 1157 | SuperClassWriter::addDimension(axisid, zoom_size); |
---|
[1158] | 1158 | if (!axis->label.isEmpty()) SuperClassWriter::addDimension(strId, stringArrayLen); |
---|
[1030] | 1159 | if (axis->hasValue) |
---|
[816] | 1160 | { |
---|
[1030] | 1161 | dims.push_back(axisid); |
---|
[1158] | 1162 | if (!axis->label.isEmpty()) dims.push_back(strId); |
---|
| 1163 | SuperClassWriter::addVariable(axisid, typePrec, dims); |
---|
[219] | 1164 | |
---|
[1030] | 1165 | if (!axis->name.isEmpty()) |
---|
| 1166 | SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid); |
---|
[219] | 1167 | |
---|
[1030] | 1168 | if (!axis->standard_name.isEmpty()) |
---|
| 1169 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid); |
---|
[540] | 1170 | |
---|
[1030] | 1171 | if (!axis->long_name.isEmpty()) |
---|
| 1172 | SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid); |
---|
[219] | 1173 | |
---|
[1030] | 1174 | if (!axis->unit.isEmpty()) |
---|
| 1175 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid); |
---|
[219] | 1176 | |
---|
[1030] | 1177 | if (!axis->positive.isEmpty()) |
---|
| 1178 | { |
---|
| 1179 | SuperClassWriter::addAttribute("axis", string("Z"), &axisid); |
---|
| 1180 | SuperClassWriter::addAttribute("positive", |
---|
| 1181 | (axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"), |
---|
| 1182 | &axisid); |
---|
| 1183 | } |
---|
[399] | 1184 | |
---|
[1030] | 1185 | StdString axisBoundsId = axisid + "_bounds"; |
---|
| 1186 | if (!axis->bounds.isEmpty()) |
---|
| 1187 | { |
---|
| 1188 | dims.push_back("axis_nbounds"); |
---|
[1158] | 1189 | SuperClassWriter::addVariable(axisBoundsId, typePrec, dims); |
---|
[1030] | 1190 | SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid); |
---|
| 1191 | } |
---|
[488] | 1192 | |
---|
[1030] | 1193 | SuperClassWriter::definition_end(); |
---|
[816] | 1194 | |
---|
[1129] | 1195 | CArray<size_t, 1>& indexToWrite = axis->localIndexToWriteOnServer; |
---|
| 1196 | int nbWritten = indexToWrite.numElements(); |
---|
| 1197 | CArray<double,1> axis_value(indexToWrite.numElements()); |
---|
| 1198 | for (int i = 0; i < nbWritten; i++) axis_value(i) = axis->value(indexToWrite(i)); |
---|
| 1199 | CArray<double,2> axis_bounds; |
---|
| 1200 | |
---|
[1030] | 1201 | switch (SuperClass::type) |
---|
| 1202 | { |
---|
| 1203 | case MULTI_FILE: |
---|
[816] | 1204 | { |
---|
[1030] | 1205 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
[633] | 1206 | |
---|
[1158] | 1207 | if (!axis->bounds.isEmpty() && axis->label.isEmpty()) |
---|
[1030] | 1208 | SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0); |
---|
[488] | 1209 | |
---|
[1158] | 1210 | // Need to check after |
---|
| 1211 | if (! axis->label.isEmpty()) SuperClassWriter::writeData(axis->label_srv, axisid, isCollective, 0); |
---|
| 1212 | |
---|
[1030] | 1213 | SuperClassWriter::definition_start(); |
---|
| 1214 | break; |
---|
| 1215 | } |
---|
| 1216 | case ONE_FILE: |
---|
| 1217 | { |
---|
| 1218 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1219 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
[1099] | 1220 | start[0] = startBounds[0] = zoom_begin - axis->global_zoom_begin; |
---|
| 1221 | count[0] = countBounds[0] = zoom_size; |
---|
[1030] | 1222 | startBounds[1] = 0; |
---|
| 1223 | countBounds[1] = 2; |
---|
| 1224 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count); |
---|
[633] | 1225 | |
---|
[1158] | 1226 | if (!axis->bounds.isEmpty()&& axis->label.isEmpty()) |
---|
[1129] | 1227 | { |
---|
| 1228 | axis_bounds.resize(2, indexToWrite.numElements()); |
---|
| 1229 | for (int i = 0; i < nbWritten; ++i) |
---|
| 1230 | { |
---|
| 1231 | axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i))); |
---|
| 1232 | axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i))); |
---|
| 1233 | } |
---|
[1030] | 1234 | SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds); |
---|
[1129] | 1235 | } |
---|
[609] | 1236 | |
---|
[1158] | 1237 | // Need to check after |
---|
| 1238 | if (! axis->label.isEmpty()) SuperClassWriter::writeData(axis->label_srv, axisid, isCollective, 0); |
---|
| 1239 | |
---|
[1030] | 1240 | SuperClassWriter::definition_start(); |
---|
[609] | 1241 | |
---|
[1030] | 1242 | break; |
---|
[816] | 1243 | } |
---|
[1030] | 1244 | default : |
---|
| 1245 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", |
---|
| 1246 | << "[ type = " << SuperClass::type << "]" |
---|
| 1247 | << " not implemented yet !"); |
---|
[609] | 1248 | } |
---|
| 1249 | } |
---|
[1030] | 1250 | } |
---|
| 1251 | catch (CNetCdfException& e) |
---|
| 1252 | { |
---|
| 1253 | StdString msg("On writing the axis : "); |
---|
| 1254 | msg.append(axisid); msg.append("\n"); |
---|
| 1255 | msg.append("In the context : "); |
---|
| 1256 | CContext* context = CContext::getCurrent() ; |
---|
| 1257 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1258 | msg.append(e.what()); |
---|
| 1259 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg); |
---|
| 1260 | } |
---|
[1158] | 1261 | axis->addRelFile(this->filename); |
---|
[391] | 1262 | } |
---|
[488] | 1263 | |
---|
[887] | 1264 | void CNc4DataOutput::writeScalar_(CScalar* scalar) |
---|
| 1265 | { |
---|
| 1266 | if (scalar->IsWritten(this->filename)) return; |
---|
| 1267 | scalar->checkAttributes(); |
---|
| 1268 | int scalarSize = 1; |
---|
| 1269 | |
---|
| 1270 | StdString scalaId = scalar->getScalarOutputName(); |
---|
| 1271 | if (isWrittenAxis(scalaId)) return ; |
---|
| 1272 | else setWrittenAxis(scalaId); |
---|
| 1273 | |
---|
[1158] | 1274 | nc_type typePrec ; |
---|
| 1275 | if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 1276 | else if (scalar->prec==4) typePrec = NC_FLOAT ; |
---|
| 1277 | else if (scalar->prec==8) typePrec = NC_DOUBLE ; |
---|
| 1278 | |
---|
| 1279 | |
---|
[887] | 1280 | try |
---|
| 1281 | { |
---|
| 1282 | if (!scalar->value.isEmpty()) |
---|
| 1283 | { |
---|
| 1284 | // dims.push_back(scalaId); |
---|
| 1285 | std::vector<StdString> dims; |
---|
[1158] | 1286 | SuperClassWriter::addVariable(scalaId, typePrec, dims); |
---|
[887] | 1287 | |
---|
| 1288 | if (!scalar->name.isEmpty()) |
---|
| 1289 | SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId); |
---|
| 1290 | |
---|
| 1291 | if (!scalar->standard_name.isEmpty()) |
---|
| 1292 | SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId); |
---|
| 1293 | |
---|
| 1294 | if (!scalar->long_name.isEmpty()) |
---|
| 1295 | SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId); |
---|
| 1296 | |
---|
| 1297 | if (!scalar->unit.isEmpty()) |
---|
| 1298 | SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId); |
---|
| 1299 | |
---|
| 1300 | SuperClassWriter::definition_end(); |
---|
| 1301 | |
---|
| 1302 | switch (SuperClass::type) |
---|
| 1303 | { |
---|
| 1304 | case MULTI_FILE: |
---|
| 1305 | { |
---|
| 1306 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1307 | scalarValue(0) = scalar->value; |
---|
| 1308 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0); |
---|
| 1309 | SuperClassWriter::definition_start(); |
---|
| 1310 | |
---|
| 1311 | break; |
---|
| 1312 | } |
---|
| 1313 | case ONE_FILE: |
---|
| 1314 | { |
---|
| 1315 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1316 | scalarValue(0) = scalar->value; |
---|
| 1317 | |
---|
| 1318 | std::vector<StdSize> start(1); |
---|
| 1319 | std::vector<StdSize> count(1); |
---|
| 1320 | start[0] = 0; |
---|
| 1321 | count[0] = 1; |
---|
| 1322 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count); |
---|
| 1323 | SuperClassWriter::definition_start(); |
---|
| 1324 | |
---|
| 1325 | break; |
---|
| 1326 | } |
---|
| 1327 | default : |
---|
| 1328 | ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)", |
---|
| 1329 | << "[ type = " << SuperClass::type << "]" |
---|
| 1330 | << " not implemented yet !"); |
---|
| 1331 | } |
---|
| 1332 | } |
---|
| 1333 | } |
---|
| 1334 | catch (CNetCdfException& e) |
---|
| 1335 | { |
---|
| 1336 | StdString msg("On writing the scalar : "); |
---|
| 1337 | msg.append(scalaId); msg.append("\n"); |
---|
| 1338 | msg.append("In the context : "); |
---|
| 1339 | CContext* context = CContext::getCurrent() ; |
---|
| 1340 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1341 | msg.append(e.what()); |
---|
| 1342 | ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg); |
---|
| 1343 | } |
---|
| 1344 | scalar->addRelFile(this->filename); |
---|
| 1345 | } |
---|
| 1346 | |
---|
[676] | 1347 | //-------------------------------------------------------------- |
---|
| 1348 | |
---|
| 1349 | void CNc4DataOutput::writeGridCompressed_(CGrid* grid) |
---|
| 1350 | { |
---|
| 1351 | if (grid->isScalarGrid() || grid->isWrittenCompressed(this->filename)) return; |
---|
| 1352 | |
---|
| 1353 | try |
---|
| 1354 | { |
---|
[887] | 1355 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 1356 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1357 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[887] | 1358 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
| 1359 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
[676] | 1360 | |
---|
| 1361 | std::vector<StdString> dims; |
---|
| 1362 | |
---|
| 1363 | if (grid->isCompressible()) |
---|
| 1364 | { |
---|
| 1365 | StdString varId = grid->getId() + "_points"; |
---|
| 1366 | |
---|
| 1367 | int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes(); |
---|
| 1368 | SuperClassWriter::addDimension(varId, nbIndexes); |
---|
| 1369 | |
---|
| 1370 | dims.push_back(varId); |
---|
| 1371 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1372 | |
---|
| 1373 | StdOStringStream compress; |
---|
| 1374 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 1375 | { |
---|
[887] | 1376 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1377 | { |
---|
| 1378 | CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]); |
---|
[772] | 1379 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 1380 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1381 | |
---|
| 1382 | switch (domain->type) |
---|
| 1383 | { |
---|
| 1384 | case CDomain::type_attr::curvilinear: |
---|
| 1385 | compress << "y" << appendDomId << " x" << appendDomId; |
---|
| 1386 | break; |
---|
| 1387 | case CDomain::type_attr::rectilinear: |
---|
| 1388 | compress << "lat" << appendDomId << " lon" << appendDomId; |
---|
| 1389 | break; |
---|
| 1390 | case CDomain::type_attr::unstructured: |
---|
| 1391 | compress << "cell" << appendDomId; |
---|
| 1392 | break; |
---|
| 1393 | } |
---|
| 1394 | ++idxDomain; |
---|
| 1395 | } |
---|
[887] | 1396 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1397 | { |
---|
| 1398 | CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]); |
---|
[772] | 1399 | compress << axis->getAxisOutputName(); |
---|
[676] | 1400 | ++idxAxis; |
---|
| 1401 | } |
---|
[887] | 1402 | else |
---|
| 1403 | { |
---|
| 1404 | CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]); |
---|
| 1405 | compress << scalar->getScalarOutputName(); |
---|
| 1406 | ++idxScalar; |
---|
| 1407 | } |
---|
[676] | 1408 | |
---|
| 1409 | if (i != 0) compress << ' '; |
---|
| 1410 | } |
---|
[1144] | 1411 | SuperClassWriter::addAttribute("compress", compress.str(), &varId); |
---|
[676] | 1412 | |
---|
| 1413 | CArray<int, 1> indexes(grid->getNumberWrittenIndexes()); |
---|
[1143] | 1414 | indexes = grid->localIndexToWriteOnServer; |
---|
[676] | 1415 | |
---|
| 1416 | switch (SuperClass::type) |
---|
| 1417 | { |
---|
| 1418 | case (MULTI_FILE): |
---|
| 1419 | { |
---|
| 1420 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1421 | break; |
---|
| 1422 | } |
---|
| 1423 | case (ONE_FILE): |
---|
| 1424 | { |
---|
| 1425 | if (grid->doGridHaveDataDistributed()) |
---|
| 1426 | grid->getDistributionServer()->computeGlobalIndex(indexes); |
---|
| 1427 | |
---|
| 1428 | std::vector<StdSize> start, count; |
---|
| 1429 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 1430 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 1431 | |
---|
| 1432 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1433 | break; |
---|
| 1434 | } |
---|
| 1435 | } |
---|
| 1436 | } |
---|
| 1437 | else |
---|
| 1438 | { |
---|
| 1439 | for (int i = 0; i < numElement; ++i) |
---|
| 1440 | { |
---|
| 1441 | StdString varId, compress; |
---|
| 1442 | CArray<int, 1> indexes; |
---|
| 1443 | bool isDistributed; |
---|
| 1444 | StdSize nbIndexes, totalNbIndexes, offset; |
---|
| 1445 | int firstGlobalIndex; |
---|
| 1446 | |
---|
[887] | 1447 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1448 | { |
---|
| 1449 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[774] | 1450 | StdString domId = domain->getDomainOutputName(); |
---|
| 1451 | |
---|
[676] | 1452 | if (!domain->isCompressible() |
---|
| 1453 | || domain->type == CDomain::type_attr::unstructured |
---|
[774] | 1454 | || domain->isWrittenCompressed(this->filename) |
---|
| 1455 | || isWrittenCompressedDomain(domId)) |
---|
[676] | 1456 | continue; |
---|
| 1457 | |
---|
| 1458 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1459 | |
---|
| 1460 | varId = domId + "_points"; |
---|
| 1461 | switch (domain->type) |
---|
| 1462 | { |
---|
| 1463 | case CDomain::type_attr::curvilinear: |
---|
| 1464 | compress = "y" + appendDomId + " x" + appendDomId; |
---|
| 1465 | break; |
---|
| 1466 | case CDomain::type_attr::rectilinear: |
---|
| 1467 | compress = "lat" + appendDomId + " lon" + appendDomId; |
---|
| 1468 | break; |
---|
| 1469 | } |
---|
| 1470 | |
---|
[1143] | 1471 | indexes.resize(domain->compressedIndexToWriteOnServer.numElements()); |
---|
| 1472 | indexes = domain->compressedIndexToWriteOnServer; |
---|
| 1473 | |
---|
[676] | 1474 | isDistributed = domain->isDistributed(); |
---|
| 1475 | nbIndexes = domain->getNumberWrittenIndexes(); |
---|
| 1476 | totalNbIndexes = domain->getTotalNumberWrittenIndexes(); |
---|
| 1477 | offset = domain->getOffsetWrittenIndexes(); |
---|
| 1478 | firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo; |
---|
| 1479 | |
---|
| 1480 | domain->addRelFileCompressed(this->filename); |
---|
[774] | 1481 | setWrittenCompressedDomain(domId); |
---|
[676] | 1482 | ++idxDomain; |
---|
| 1483 | } |
---|
[887] | 1484 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1485 | { |
---|
| 1486 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[774] | 1487 | StdString axisId = axis->getAxisOutputName(); |
---|
| 1488 | |
---|
| 1489 | if (!axis->isCompressible() |
---|
| 1490 | || axis->isWrittenCompressed(this->filename) |
---|
| 1491 | || isWrittenCompressedAxis(axisId)) |
---|
[676] | 1492 | continue; |
---|
| 1493 | |
---|
| 1494 | varId = axisId + "_points"; |
---|
| 1495 | compress = axisId; |
---|
| 1496 | |
---|
[1143] | 1497 | indexes.resize(axis->compressedIndexToWriteOnServer.numElements()); |
---|
| 1498 | indexes = axis->compressedIndexToWriteOnServer; |
---|
| 1499 | |
---|
[676] | 1500 | isDistributed = axis->isDistributed(); |
---|
| 1501 | nbIndexes = axis->getNumberWrittenIndexes(); |
---|
| 1502 | totalNbIndexes = axis->getTotalNumberWrittenIndexes(); |
---|
| 1503 | offset = axis->getOffsetWrittenIndexes(); |
---|
| 1504 | firstGlobalIndex = axis->begin; |
---|
| 1505 | |
---|
| 1506 | axis->addRelFileCompressed(this->filename); |
---|
[774] | 1507 | setWrittenCompressedAxis(axisId); |
---|
[676] | 1508 | ++idxAxis; |
---|
| 1509 | } |
---|
[887] | 1510 | else |
---|
| 1511 | { |
---|
| 1512 | } |
---|
[676] | 1513 | |
---|
| 1514 | if (!varId.empty()) |
---|
| 1515 | { |
---|
| 1516 | SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes); |
---|
| 1517 | |
---|
| 1518 | dims.clear(); |
---|
| 1519 | dims.push_back(varId); |
---|
| 1520 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1521 | |
---|
| 1522 | SuperClassWriter::addAttribute("compress", compress, &varId); |
---|
| 1523 | |
---|
| 1524 | switch (SuperClass::type) |
---|
| 1525 | { |
---|
| 1526 | case (MULTI_FILE): |
---|
| 1527 | { |
---|
| 1528 | indexes -= firstGlobalIndex; |
---|
| 1529 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1530 | break; |
---|
| 1531 | } |
---|
| 1532 | case (ONE_FILE): |
---|
| 1533 | { |
---|
| 1534 | std::vector<StdSize> start, count; |
---|
| 1535 | start.push_back(offset); |
---|
| 1536 | count.push_back(nbIndexes); |
---|
| 1537 | |
---|
| 1538 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1539 | break; |
---|
| 1540 | } |
---|
| 1541 | } |
---|
| 1542 | } |
---|
[1144] | 1543 | } |
---|
[676] | 1544 | } |
---|
| 1545 | |
---|
| 1546 | grid->addRelFileCompressed(this->filename); |
---|
| 1547 | } |
---|
| 1548 | catch (CNetCdfException& e) |
---|
| 1549 | { |
---|
| 1550 | StdString msg("On writing compressed grid : "); |
---|
| 1551 | msg.append(grid->getId()); msg.append("\n"); |
---|
| 1552 | msg.append("In the context : "); |
---|
| 1553 | CContext* context = CContext::getCurrent(); |
---|
| 1554 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1555 | msg.append(e.what()); |
---|
| 1556 | ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg); |
---|
| 1557 | } |
---|
| 1558 | } |
---|
| 1559 | |
---|
| 1560 | //-------------------------------------------------------------- |
---|
| 1561 | |
---|
[391] | 1562 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
| 1563 | { |
---|
[498] | 1564 | try |
---|
| 1565 | { |
---|
[802] | 1566 | SuperClassWriter::addDimension(getTimeCounterName()); |
---|
[498] | 1567 | } |
---|
| 1568 | catch (CNetCdfException& e) |
---|
| 1569 | { |
---|
[614] | 1570 | StdString msg("On writing time dimension : time_couter\n"); |
---|
[498] | 1571 | msg.append("In the context : "); |
---|
| 1572 | CContext* context = CContext::getCurrent() ; |
---|
| 1573 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1574 | msg.append(e.what()); |
---|
| 1575 | ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg); |
---|
| 1576 | } |
---|
[391] | 1577 | } |
---|
[676] | 1578 | |
---|
[219] | 1579 | //-------------------------------------------------------------- |
---|
| 1580 | |
---|
[347] | 1581 | void CNc4DataOutput::writeField_(CField* field) |
---|
[219] | 1582 | { |
---|
[1158] | 1583 | CContext* context = CContext::getCurrent() ; |
---|
| 1584 | CContextServer* server=context->server ; |
---|
[300] | 1585 | |
---|
[1158] | 1586 | std::vector<StdString> dims, coodinates; |
---|
| 1587 | CGrid* grid = field->grid; |
---|
| 1588 | if (!grid->doGridHaveDataToWrite()) |
---|
[567] | 1589 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[488] | 1590 | |
---|
[1158] | 1591 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 1592 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
| 1593 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1594 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 1595 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
[219] | 1596 | |
---|
[1158] | 1597 | StdString timeid = getTimeCounterName(); |
---|
| 1598 | StdString dimXid,dimYid; |
---|
| 1599 | std::deque<StdString> dimIdList, dimCoordList; |
---|
| 1600 | bool hasArea = false; |
---|
| 1601 | StdString cellMeasures = "area:"; |
---|
| 1602 | bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output; |
---|
[488] | 1603 | |
---|
[1158] | 1604 | for (int i = 0; i < numElement; ++i) |
---|
| 1605 | { |
---|
| 1606 | if (2 == axisDomainOrder(i)) |
---|
| 1607 | { |
---|
| 1608 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 1609 | StdString domId = domain->getDomainOutputName(); |
---|
| 1610 | StdString appendDomId = singleDomain ? "" : "_" + domId ; |
---|
[676] | 1611 | |
---|
[1158] | 1612 | if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured) |
---|
| 1613 | { |
---|
| 1614 | dimIdList.push_back(domId + "_points"); |
---|
| 1615 | field->setUseCompressedOutput(); |
---|
| 1616 | } |
---|
[676] | 1617 | |
---|
[1158] | 1618 | switch (domain->type) |
---|
[879] | 1619 | { |
---|
[1158] | 1620 | case CDomain::type_attr::curvilinear: |
---|
| 1621 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1622 | { |
---|
| 1623 | dimXid = StdString("x").append(appendDomId); |
---|
| 1624 | dimIdList.push_back(dimXid); |
---|
| 1625 | dimYid = StdString("y").append(appendDomId); |
---|
| 1626 | dimIdList.push_back(dimYid); |
---|
| 1627 | } |
---|
| 1628 | dimCoordList.push_back(StdString("nav_lon").append(appendDomId)); |
---|
| 1629 | dimCoordList.push_back(StdString("nav_lat").append(appendDomId)); |
---|
| 1630 | break ; |
---|
| 1631 | case CDomain::type_attr::rectilinear: |
---|
| 1632 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1633 | { |
---|
| 1634 | dimXid = StdString("lon").append(appendDomId); |
---|
| 1635 | dimIdList.push_back(dimXid); |
---|
| 1636 | dimYid = StdString("lat").append(appendDomId); |
---|
| 1637 | dimIdList.push_back(dimYid); |
---|
| 1638 | } |
---|
| 1639 | break ; |
---|
| 1640 | case CDomain::type_attr::unstructured: |
---|
| 1641 | { |
---|
| 1642 | if (SuperClassWriter::useCFConvention) |
---|
| 1643 | { |
---|
| 1644 | dimXid = StdString("cell").append(appendDomId); |
---|
| 1645 | dimIdList.push_back(dimXid); |
---|
| 1646 | dimCoordList.push_back(StdString("lon").append(appendDomId)); |
---|
| 1647 | dimCoordList.push_back(StdString("lat").append(appendDomId)); |
---|
| 1648 | } |
---|
| 1649 | else |
---|
| 1650 | { |
---|
| 1651 | StdString domainName = domain->name; |
---|
| 1652 | if (domain->nvertex == 1) |
---|
| 1653 | { |
---|
| 1654 | dimXid = "n" + domainName + "_node"; |
---|
| 1655 | dimIdList.push_back(dimXid); |
---|
| 1656 | dimCoordList.push_back(StdString(domainName + "_node_x")); |
---|
| 1657 | dimCoordList.push_back(StdString(domainName + "_node_y")); |
---|
| 1658 | } |
---|
| 1659 | else if (domain->nvertex == 2) |
---|
| 1660 | { |
---|
| 1661 | dimXid = "n" + domainName + "_edge"; |
---|
| 1662 | dimIdList.push_back(dimXid); |
---|
| 1663 | dimCoordList.push_back(StdString(domainName + "_edge_x")); |
---|
| 1664 | dimCoordList.push_back(StdString(domainName + "_edge_y")); |
---|
| 1665 | } |
---|
| 1666 | else |
---|
| 1667 | { |
---|
| 1668 | dimXid = "n" + domainName + "_face"; |
---|
| 1669 | dimIdList.push_back(dimXid); |
---|
| 1670 | dimCoordList.push_back(StdString(domainName + "_face_x")); |
---|
| 1671 | dimCoordList.push_back(StdString(domainName + "_face_y")); |
---|
| 1672 | } |
---|
| 1673 | } // ugrid convention |
---|
| 1674 | } // case unstructured domain |
---|
[879] | 1675 | } |
---|
[1158] | 1676 | |
---|
| 1677 | if (domain->hasArea) |
---|
[879] | 1678 | { |
---|
[1158] | 1679 | hasArea = true; |
---|
| 1680 | cellMeasures += " area" + appendDomId; |
---|
[879] | 1681 | } |
---|
[1158] | 1682 | ++idxDomain; |
---|
| 1683 | } |
---|
| 1684 | else if (1 == axisDomainOrder(i)) |
---|
| 1685 | { |
---|
| 1686 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 1687 | StdString axisId = axis->getAxisOutputName(); |
---|
| 1688 | |
---|
| 1689 | if (compressedOutput && axis->isCompressible()) |
---|
[879] | 1690 | { |
---|
[1158] | 1691 | dimIdList.push_back(axisId + "_points"); |
---|
| 1692 | field->setUseCompressedOutput(); |
---|
[879] | 1693 | } |
---|
[1158] | 1694 | else |
---|
| 1695 | dimIdList.push_back(axisId); |
---|
[878] | 1696 | |
---|
[1158] | 1697 | dimCoordList.push_back(axisId); |
---|
| 1698 | ++idxAxis; |
---|
| 1699 | } |
---|
| 1700 | else // scalar |
---|
| 1701 | { |
---|
[887] | 1702 | /* Do nothing here */ |
---|
[1158] | 1703 | } |
---|
| 1704 | } |
---|
[488] | 1705 | |
---|
[1158] | 1706 | StdString fieldid = field->getFieldOutputName(); |
---|
[219] | 1707 | |
---|
[1158] | 1708 | nc_type type ; |
---|
| 1709 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
| 1710 | else |
---|
| 1711 | { |
---|
| 1712 | if (field->prec==2) type = NC_SHORT ; |
---|
| 1713 | else if (field->prec==4) type = NC_FLOAT ; |
---|
| 1714 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
| 1715 | } |
---|
[488] | 1716 | |
---|
[1158] | 1717 | bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once); |
---|
[488] | 1718 | |
---|
[1158] | 1719 | if (wtime) |
---|
| 1720 | { |
---|
| 1721 | if (field->hasTimeInstant && hasTimeInstant) coodinates.push_back(string("time_instant")); |
---|
| 1722 | else if (field->hasTimeCentered && hasTimeCentered) coodinates.push_back(string("time_centered")); |
---|
| 1723 | dims.push_back(timeid); |
---|
| 1724 | } |
---|
[488] | 1725 | |
---|
[1158] | 1726 | if (compressedOutput && grid->isCompressible()) |
---|
| 1727 | { |
---|
| 1728 | dims.push_back(grid->getId() + "_points"); |
---|
| 1729 | field->setUseCompressedOutput(); |
---|
| 1730 | } |
---|
| 1731 | else |
---|
| 1732 | { |
---|
| 1733 | while (!dimIdList.empty()) |
---|
| 1734 | { |
---|
| 1735 | dims.push_back(dimIdList.back()); |
---|
| 1736 | dimIdList.pop_back(); |
---|
| 1737 | } |
---|
| 1738 | } |
---|
[219] | 1739 | |
---|
[1158] | 1740 | while (!dimCoordList.empty()) |
---|
| 1741 | { |
---|
| 1742 | coodinates.push_back(dimCoordList.back()); |
---|
| 1743 | dimCoordList.pop_back(); |
---|
| 1744 | } |
---|
[219] | 1745 | |
---|
[1158] | 1746 | try |
---|
| 1747 | { |
---|
[498] | 1748 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
[488] | 1749 | |
---|
[498] | 1750 | if (!field->standard_name.isEmpty()) |
---|
| 1751 | SuperClassWriter::addAttribute |
---|
| 1752 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
[219] | 1753 | |
---|
[498] | 1754 | if (!field->long_name.isEmpty()) |
---|
| 1755 | SuperClassWriter::addAttribute |
---|
| 1756 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
[219] | 1757 | |
---|
[498] | 1758 | if (!field->unit.isEmpty()) |
---|
| 1759 | SuperClassWriter::addAttribute |
---|
| 1760 | ("units", field->unit.getValue(), &fieldid); |
---|
[463] | 1761 | |
---|
[1158] | 1762 | // Ugrid field attributes "mesh" and "location" |
---|
| 1763 | if (!SuperClassWriter::useCFConvention) |
---|
| 1764 | { |
---|
| 1765 | if (!domainList.empty()) |
---|
| 1766 | { |
---|
| 1767 | CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain |
---|
| 1768 | StdString mesh = domain->name; |
---|
| 1769 | SuperClassWriter::addAttribute("mesh", mesh, &fieldid); |
---|
| 1770 | StdString location; |
---|
| 1771 | if (domain->nvertex == 1) |
---|
| 1772 | location = "node"; |
---|
| 1773 | else if (domain->nvertex == 2) |
---|
| 1774 | location = "edge"; |
---|
| 1775 | else if (domain->nvertex > 2) |
---|
| 1776 | location = "face"; |
---|
| 1777 | SuperClassWriter::addAttribute("location", location, &fieldid); |
---|
| 1778 | } |
---|
| 1779 | |
---|
| 1780 | } |
---|
| 1781 | |
---|
| 1782 | if (!field->valid_min.isEmpty()) |
---|
[498] | 1783 | SuperClassWriter::addAttribute |
---|
| 1784 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
[463] | 1785 | |
---|
[498] | 1786 | if (!field->valid_max.isEmpty()) |
---|
| 1787 | SuperClassWriter::addAttribute |
---|
| 1788 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
[464] | 1789 | |
---|
[498] | 1790 | if (!field->scale_factor.isEmpty()) |
---|
| 1791 | SuperClassWriter::addAttribute |
---|
| 1792 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
[464] | 1793 | |
---|
[498] | 1794 | if (!field->add_offset.isEmpty()) |
---|
| 1795 | SuperClassWriter::addAttribute |
---|
| 1796 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
[488] | 1797 | |
---|
[498] | 1798 | SuperClassWriter::addAttribute |
---|
| 1799 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
[472] | 1800 | |
---|
[498] | 1801 | // write child variables as attributes |
---|
[488] | 1802 | |
---|
| 1803 | |
---|
[498] | 1804 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
| 1805 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
[472] | 1806 | |
---|
[1021] | 1807 | bool alreadyAddCellMethod = false; |
---|
| 1808 | StdString cellMethodsPrefix(""), cellMethodsSuffix(""); |
---|
| 1809 | if (!field->cell_methods.isEmpty()) |
---|
| 1810 | { |
---|
[1158] | 1811 | StdString cellMethodString = field->cell_methods; |
---|
| 1812 | if (field->cell_methods_mode.isEmpty() || |
---|
[1021] | 1813 | (CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode)) |
---|
[1158] | 1814 | { |
---|
| 1815 | SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid); |
---|
| 1816 | alreadyAddCellMethod = true; |
---|
| 1817 | } |
---|
| 1818 | else |
---|
| 1819 | { |
---|
| 1820 | switch (field->cell_methods_mode) |
---|
| 1821 | { |
---|
| 1822 | case (CField::cell_methods_mode_attr::prefix): |
---|
| 1823 | cellMethodsPrefix = cellMethodString; |
---|
| 1824 | cellMethodsPrefix += " "; |
---|
| 1825 | break; |
---|
| 1826 | case (CField::cell_methods_mode_attr::suffix): |
---|
| 1827 | cellMethodsSuffix = " "; |
---|
| 1828 | cellMethodsSuffix += cellMethodString; |
---|
| 1829 | break; |
---|
| 1830 | case (CField::cell_methods_mode_attr::none): |
---|
| 1831 | break; |
---|
| 1832 | default: |
---|
| 1833 | break; |
---|
| 1834 | } |
---|
| 1835 | } |
---|
[1021] | 1836 | } |
---|
[488] | 1837 | |
---|
[1021] | 1838 | |
---|
[498] | 1839 | if (wtime) |
---|
| 1840 | { |
---|
[614] | 1841 | CDuration freqOp = field->freq_op.getValue(); |
---|
| 1842 | freqOp.solveTimeStep(*context->calendar); |
---|
| 1843 | StdString freqOpStr = freqOp.toStringUDUnits(); |
---|
[612] | 1844 | SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid); |
---|
[437] | 1845 | |
---|
[614] | 1846 | CDuration freqOut = field->getRelFile()->output_freq.getValue(); |
---|
| 1847 | freqOut.solveTimeStep(*context->calendar); |
---|
| 1848 | SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid); |
---|
[612] | 1849 | |
---|
[1021] | 1850 | StdString cellMethods(cellMethodsPrefix + "time: "); |
---|
[612] | 1851 | if (field->operation.getValue() == "instant") cellMethods += "point"; |
---|
| 1852 | else if (field->operation.getValue() == "average") cellMethods += "mean"; |
---|
| 1853 | else if (field->operation.getValue() == "accumulate") cellMethods += "sum"; |
---|
| 1854 | else cellMethods += field->operation; |
---|
[614] | 1855 | if (freqOp.resolve(*context->calendar) != freqOut.resolve(*context->calendar)) |
---|
| 1856 | cellMethods += " (interval: " + freqOpStr + ")"; |
---|
[1021] | 1857 | cellMethods += cellMethodsSuffix; |
---|
| 1858 | if (!alreadyAddCellMethod) |
---|
| 1859 | SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid); |
---|
[498] | 1860 | } |
---|
[488] | 1861 | |
---|
[611] | 1862 | if (hasArea) |
---|
| 1863 | SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid); |
---|
| 1864 | |
---|
[498] | 1865 | if (!field->default_value.isEmpty()) |
---|
| 1866 | { |
---|
| 1867 | double default_value = field->default_value.getValue(); |
---|
| 1868 | float fdefault_value = (float)default_value; |
---|
| 1869 | if (type == NC_DOUBLE) |
---|
| 1870 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
| 1871 | else |
---|
| 1872 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
| 1873 | } |
---|
| 1874 | else |
---|
[517] | 1875 | SuperClassWriter::setDefaultValue(fieldid, (double*)NULL); |
---|
[219] | 1876 | |
---|
[606] | 1877 | if (field->compression_level.isEmpty()) |
---|
| 1878 | field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level; |
---|
| 1879 | SuperClassWriter::setCompressionLevel(fieldid, field->compression_level); |
---|
| 1880 | |
---|
[878] | 1881 | { // Ecriture des coordonnes |
---|
[488] | 1882 | |
---|
[498] | 1883 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
| 1884 | std::vector<StdString>::iterator |
---|
| 1885 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
[488] | 1886 | |
---|
[498] | 1887 | for (; itc!= endc; itc++) |
---|
| 1888 | { |
---|
| 1889 | StdString & coord = *itc; |
---|
| 1890 | if (itc+1 != endc) |
---|
| 1891 | coordstr.append(coord).append(" "); |
---|
| 1892 | else coordstr.append(coord); |
---|
| 1893 | } |
---|
[219] | 1894 | |
---|
[498] | 1895 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
[219] | 1896 | |
---|
[498] | 1897 | } |
---|
[219] | 1898 | } |
---|
[498] | 1899 | catch (CNetCdfException& e) |
---|
| 1900 | { |
---|
| 1901 | StdString msg("On writing field : "); |
---|
| 1902 | msg.append(fieldid); msg.append("\n"); |
---|
| 1903 | msg.append("In the context : "); |
---|
| 1904 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1905 | msg.append(e.what()); |
---|
| 1906 | ERROR("CNc4DataOutput::writeField_(CField* field)", << msg); |
---|
| 1907 | } |
---|
[879] | 1908 | } // writeField_() |
---|
[219] | 1909 | |
---|
| 1910 | //-------------------------------------------------------------- |
---|
| 1911 | |
---|
[347] | 1912 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
[219] | 1913 | { |
---|
[773] | 1914 | StdString filename = file->getFileOutputName(); |
---|
[219] | 1915 | StdString description = (!file->description.isEmpty()) |
---|
| 1916 | ? file->description.getValue() |
---|
[335] | 1917 | : StdString("Created by xios"); |
---|
[609] | 1918 | |
---|
| 1919 | singleDomain = (file->nbDomains == 1); |
---|
| 1920 | |
---|
[1158] | 1921 | StdString conv_str ; |
---|
| 1922 | if (file->convention_str.isEmpty()) |
---|
| 1923 | { |
---|
| 1924 | if (SuperClassWriter::useCFConvention) conv_str="CF-1.6" ; |
---|
| 1925 | else conv_str="UGRID" ; |
---|
| 1926 | } |
---|
| 1927 | else conv_str=file->convention_str ; |
---|
| 1928 | |
---|
[498] | 1929 | try |
---|
| 1930 | { |
---|
[1158] | 1931 | this->writeFileAttributes(filename, description, |
---|
| 1932 | conv_str, |
---|
| 1933 | StdString("An IPSL model"), |
---|
| 1934 | this->getTimeStamp()); |
---|
[609] | 1935 | |
---|
[701] | 1936 | if (!appendMode) |
---|
| 1937 | SuperClassWriter::addDimension("axis_nbounds", 2); |
---|
[498] | 1938 | } |
---|
| 1939 | catch (CNetCdfException& e) |
---|
| 1940 | { |
---|
| 1941 | StdString msg("On writing file : "); |
---|
| 1942 | msg.append(filename); msg.append("\n"); |
---|
| 1943 | msg.append("In the context : "); |
---|
| 1944 | CContext* context = CContext::getCurrent() ; |
---|
| 1945 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1946 | msg.append(e.what()); |
---|
| 1947 | ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg); |
---|
| 1948 | } |
---|
[219] | 1949 | } |
---|
[488] | 1950 | |
---|
[472] | 1951 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
| 1952 | { |
---|
[773] | 1953 | StdString name = var->getVariableOutputName(); |
---|
[488] | 1954 | |
---|
[498] | 1955 | try |
---|
| 1956 | { |
---|
[527] | 1957 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1958 | addAttribute(name, var->getData<int>(), &fieldId); |
---|
| 1959 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1960 | addAttribute(name, var->getData<short int>(), &fieldId); |
---|
| 1961 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1962 | addAttribute(name, var->getData<float>(), &fieldId); |
---|
| 1963 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1964 | addAttribute(name, var->getData<double>(), &fieldId); |
---|
| 1965 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1966 | addAttribute(name, var->getData<string>(), &fieldId); |
---|
| 1967 | else |
---|
| 1968 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", |
---|
| 1969 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1970 | } |
---|
| 1971 | catch (CNetCdfException& e) |
---|
| 1972 | { |
---|
| 1973 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1974 | msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n"); |
---|
| 1975 | msg.append("In the context : "); |
---|
| 1976 | CContext* context = CContext::getCurrent() ; |
---|
| 1977 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1978 | msg.append(e.what()); |
---|
| 1979 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg); |
---|
| 1980 | } |
---|
[472] | 1981 | } |
---|
[488] | 1982 | |
---|
[472] | 1983 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
| 1984 | { |
---|
[773] | 1985 | StdString name = var->getVariableOutputName(); |
---|
| 1986 | |
---|
[498] | 1987 | try |
---|
| 1988 | { |
---|
[527] | 1989 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1990 | addAttribute(name, var->getData<int>()); |
---|
| 1991 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1992 | addAttribute(name, var->getData<short int>()); |
---|
| 1993 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1994 | addAttribute(name, var->getData<float>()); |
---|
| 1995 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1996 | addAttribute(name, var->getData<double>()); |
---|
| 1997 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1998 | addAttribute(name, var->getData<string>()); |
---|
| 1999 | else |
---|
| 2000 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", |
---|
| 2001 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 2002 | } |
---|
| 2003 | catch (CNetCdfException& e) |
---|
| 2004 | { |
---|
| 2005 | StdString msg("On writing attributes of variable with name : "); |
---|
| 2006 | msg.append(name); msg.append("\n"); |
---|
| 2007 | msg.append("In the context : "); |
---|
| 2008 | CContext* context = CContext::getCurrent() ; |
---|
| 2009 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2010 | msg.append(e.what()); |
---|
| 2011 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg); |
---|
| 2012 | } |
---|
[488] | 2013 | } |
---|
| 2014 | |
---|
[321] | 2015 | void CNc4DataOutput::syncFile_ (void) |
---|
| 2016 | { |
---|
[498] | 2017 | try |
---|
| 2018 | { |
---|
| 2019 | SuperClassWriter::sync() ; |
---|
| 2020 | } |
---|
| 2021 | catch (CNetCdfException& e) |
---|
| 2022 | { |
---|
| 2023 | StdString msg("On synchronizing the write among processes"); |
---|
| 2024 | msg.append("In the context : "); |
---|
| 2025 | CContext* context = CContext::getCurrent() ; |
---|
| 2026 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2027 | msg.append(e.what()); |
---|
| 2028 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 2029 | } |
---|
[321] | 2030 | } |
---|
[219] | 2031 | |
---|
[286] | 2032 | void CNc4DataOutput::closeFile_ (void) |
---|
| 2033 | { |
---|
[498] | 2034 | try |
---|
| 2035 | { |
---|
| 2036 | SuperClassWriter::close() ; |
---|
| 2037 | } |
---|
| 2038 | catch (CNetCdfException& e) |
---|
| 2039 | { |
---|
| 2040 | StdString msg("On closing file"); |
---|
| 2041 | msg.append("In the context : "); |
---|
| 2042 | CContext* context = CContext::getCurrent() ; |
---|
| 2043 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2044 | msg.append(e.what()); |
---|
| 2045 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 2046 | } |
---|
| 2047 | |
---|
[286] | 2048 | } |
---|
| 2049 | |
---|
[219] | 2050 | //--------------------------------------------------------------- |
---|
| 2051 | |
---|
| 2052 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
| 2053 | { |
---|
| 2054 | const int buffer_size = 100; |
---|
| 2055 | time_t rawtime; |
---|
| 2056 | struct tm * timeinfo = NULL; |
---|
| 2057 | char buffer [buffer_size]; |
---|
[1158] | 2058 | StdString formatStr; |
---|
| 2059 | if (file->time_stamp_format.isEmpty()) formatStr="%Y-%b-%d %H:%M:%S %Z" ; |
---|
| 2060 | else formatStr=file->time_stamp_format; |
---|
[219] | 2061 | |
---|
[1158] | 2062 | // time ( &rawtime ); |
---|
| 2063 | // timeinfo = localtime ( &rawtime ); |
---|
[219] | 2064 | time ( &rawtime ); |
---|
[1158] | 2065 | timeinfo = gmtime ( &rawtime ); |
---|
| 2066 | strftime (buffer, buffer_size, formatStr.c_str(), timeinfo); |
---|
[219] | 2067 | |
---|
| 2068 | return (StdString(buffer)); |
---|
| 2069 | } |
---|
[488] | 2070 | |
---|
[219] | 2071 | //--------------------------------------------------------------- |
---|
[488] | 2072 | |
---|
[347] | 2073 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
[219] | 2074 | { |
---|
[707] | 2075 | CContext* context = CContext::getCurrent(); |
---|
| 2076 | CContextServer* server = context->server; |
---|
| 2077 | CGrid* grid = field->grid; |
---|
[300] | 2078 | |
---|
[1158] | 2079 | if (field->getNStep()<1) |
---|
| 2080 | { |
---|
| 2081 | return; |
---|
| 2082 | } |
---|
[952] | 2083 | |
---|
[707] | 2084 | if (!grid->doGridHaveDataToWrite()) |
---|
[1158] | 2085 | if (SuperClass::type == MULTI_FILE || !isCollective) |
---|
| 2086 | { |
---|
| 2087 | return; |
---|
| 2088 | } |
---|
[488] | 2089 | |
---|
[770] | 2090 | StdString fieldid = field->getFieldOutputName(); |
---|
[286] | 2091 | |
---|
[707] | 2092 | StdOStringStream oss; |
---|
| 2093 | string timeAxisId; |
---|
[1158] | 2094 | if (field->hasTimeInstant) timeAxisId = "time_instant"; |
---|
| 2095 | else if (field->hasTimeCentered) timeAxisId = "time_centered"; |
---|
[488] | 2096 | |
---|
[802] | 2097 | StdString timeBoundId = getTimeCounterName() + "_bounds"; |
---|
[449] | 2098 | |
---|
[707] | 2099 | StdString timeAxisBoundId; |
---|
[1158] | 2100 | if (field->hasTimeInstant) timeAxisBoundId = "time_instant_bounds"; |
---|
| 2101 | else if (field->hasTimeCentered) timeAxisBoundId = "time_centered_bounds"; |
---|
[488] | 2102 | |
---|
[707] | 2103 | if (!field->wasWritten()) |
---|
| 2104 | { |
---|
[1158] | 2105 | if (appendMode && field->file->record_offset.isEmpty() && |
---|
| 2106 | field->getOperationTimeType() != func::CFunctor::once) |
---|
[707] | 2107 | { |
---|
[1158] | 2108 | double factorUnit; |
---|
| 2109 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) |
---|
| 2110 | factorUnit=context->getCalendar()->getDayLengthInSeconds() ; |
---|
| 2111 | else factorUnit=1 ; |
---|
| 2112 | field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1); |
---|
[707] | 2113 | } |
---|
[488] | 2114 | |
---|
[707] | 2115 | field->setWritten(); |
---|
| 2116 | } |
---|
[488] | 2117 | |
---|
| 2118 | |
---|
[707] | 2119 | CArray<double,1> time_data(1); |
---|
| 2120 | CArray<double,1> time_data_bound(2); |
---|
| 2121 | CArray<double,1> time_counter(1); |
---|
| 2122 | CArray<double,1> time_counter_bound(2); |
---|
| 2123 | |
---|
| 2124 | bool wtime = (field->getOperationTimeType() != func::CFunctor::once); |
---|
[1158] | 2125 | bool wtimeCounter =false ; |
---|
| 2126 | bool wtimeData =false ; |
---|
| 2127 | |
---|
[707] | 2128 | |
---|
[444] | 2129 | if (wtime) |
---|
| 2130 | { |
---|
[692] | 2131 | Time lastWrite = field->last_Write_srv; |
---|
| 2132 | Time lastLastWrite = field->lastlast_Write_srv; |
---|
| 2133 | |
---|
[1158] | 2134 | |
---|
| 2135 | if (field->hasTimeInstant) |
---|
| 2136 | { |
---|
| 2137 | time_data(0) = time_data_bound(1) = lastWrite; |
---|
[692] | 2138 | time_data_bound(0) = time_data_bound(1) = lastWrite; |
---|
[1158] | 2139 | if (timeCounterType==instant) |
---|
| 2140 | { |
---|
| 2141 | time_counter(0) = time_data(0); |
---|
| 2142 | time_counter_bound(0) = time_data_bound(0); |
---|
| 2143 | time_counter_bound(1) = time_data_bound(1); |
---|
| 2144 | wtimeCounter=true ; |
---|
| 2145 | } |
---|
| 2146 | if (hasTimeInstant) wtimeData=true ; |
---|
| 2147 | } |
---|
| 2148 | else if (field->hasTimeCentered) |
---|
[488] | 2149 | { |
---|
[1158] | 2150 | time_data(0) = (lastWrite + lastLastWrite) / 2; |
---|
[692] | 2151 | time_data_bound(0) = lastLastWrite; |
---|
| 2152 | time_data_bound(1) = lastWrite; |
---|
[1158] | 2153 | if (timeCounterType==centered) |
---|
| 2154 | { |
---|
| 2155 | time_counter(0) = time_data(0) ; |
---|
| 2156 | time_counter_bound(0) = time_data_bound(0) ; |
---|
| 2157 | time_counter_bound(1) = time_data_bound(1) ; |
---|
| 2158 | wtimeCounter=true ; |
---|
| 2159 | } |
---|
| 2160 | if (hasTimeCentered) wtimeData=true ; |
---|
[488] | 2161 | } |
---|
| 2162 | |
---|
[1158] | 2163 | if (timeCounterType==record) |
---|
| 2164 | { |
---|
[692] | 2165 | time_counter(0) = field->getNStep() - 1; |
---|
[1158] | 2166 | time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1; |
---|
| 2167 | wtimeCounter=true ; |
---|
| 2168 | } |
---|
[692] | 2169 | |
---|
[1158] | 2170 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) |
---|
[692] | 2171 | { |
---|
[1158] | 2172 | double secByDay=context->getCalendar()->getDayLengthInSeconds() ; |
---|
| 2173 | time_data/=secByDay; |
---|
| 2174 | time_data_bound/=secByDay; |
---|
| 2175 | time_counter/=secByDay; |
---|
| 2176 | time_counter_bound/=secByDay; |
---|
[692] | 2177 | } |
---|
| 2178 | } |
---|
| 2179 | |
---|
[707] | 2180 | bool isRoot = (server->intraCommRank == 0); |
---|
[488] | 2181 | |
---|
[464] | 2182 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
| 2183 | { |
---|
[707] | 2184 | double scaleFactor = 1.0; |
---|
| 2185 | double addOffset = 0.0; |
---|
| 2186 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
---|
| 2187 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
---|
| 2188 | field->scaleFactorAddOffset(scaleFactor, addOffset); |
---|
[464] | 2189 | } |
---|
[488] | 2190 | |
---|
[498] | 2191 | try |
---|
[219] | 2192 | { |
---|
[676] | 2193 | size_t writtenSize; |
---|
| 2194 | if (field->getUseCompressedOutput()) |
---|
| 2195 | writtenSize = grid->getNumberWrittenIndexes(); |
---|
| 2196 | else |
---|
| 2197 | writtenSize = grid->getWrittenDataSize(); |
---|
| 2198 | |
---|
| 2199 | CArray<double,1> fieldData(writtenSize); |
---|
[567] | 2200 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
---|
[676] | 2201 | |
---|
| 2202 | if (field->getUseCompressedOutput()) |
---|
| 2203 | field->outputCompressedField(fieldData); |
---|
| 2204 | else |
---|
| 2205 | field->outputField(fieldData); |
---|
| 2206 | |
---|
[707] | 2207 | if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData); |
---|
[567] | 2208 | |
---|
| 2209 | switch (SuperClass::type) |
---|
[498] | 2210 | { |
---|
[567] | 2211 | case (MULTI_FILE) : |
---|
| 2212 | { |
---|
[1158] | 2213 | CTimer::get("Files : writing data").resume(); |
---|
[692] | 2214 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1); |
---|
[1158] | 2215 | CTimer::get("Files : writing data").suspend(); |
---|
[567] | 2216 | if (wtime) |
---|
| 2217 | { |
---|
[1158] | 2218 | CTimer::get("Files : writing time axis").resume(); |
---|
| 2219 | if ( wtimeData) |
---|
[692] | 2220 | { |
---|
[1158] | 2221 | // SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
| 2222 | // SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
| 2223 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2224 | SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2225 | } |
---|
| 2226 | if (wtimeCounter) |
---|
| 2227 | { |
---|
| 2228 | // SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1); |
---|
| 2229 | // if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
| 2230 | SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot); |
---|
| 2231 | if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
[692] | 2232 | } |
---|
[1158] | 2233 | CTimer::get("Files : writing time axis").suspend(); |
---|
[567] | 2234 | } |
---|
[707] | 2235 | break; |
---|
[567] | 2236 | } |
---|
| 2237 | case (ONE_FILE) : |
---|
| 2238 | { |
---|
[676] | 2239 | const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 2240 | const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 2241 | const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
[464] | 2242 | |
---|
[676] | 2243 | std::vector<StdSize> start, count; |
---|
[464] | 2244 | |
---|
[676] | 2245 | if (field->getUseCompressedOutput()) |
---|
| 2246 | { |
---|
| 2247 | if (grid->isCompressible()) |
---|
| 2248 | { |
---|
| 2249 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 2250 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 2251 | } |
---|
| 2252 | else |
---|
| 2253 | { |
---|
[887] | 2254 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 2255 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2256 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2257 | int numElement = axisDomainOrder.numElements(); |
---|
| 2258 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2259 | int idx = nZoomBeginGlobal.size() - 1; |
---|
[464] | 2260 | |
---|
[676] | 2261 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2262 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2263 | |
---|
| 2264 | |
---|
| 2265 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2266 | { |
---|
[887] | 2267 | if (2 == axisDomainOrder(i)) |
---|
[676] | 2268 | { |
---|
| 2269 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2270 | |
---|
| 2271 | if (domain->isCompressible()) |
---|
| 2272 | { |
---|
| 2273 | start.push_back(domain->getOffsetWrittenIndexes()); |
---|
| 2274 | count.push_back(domain->getNumberWrittenIndexes()); |
---|
[710] | 2275 | idx -= 2; |
---|
[676] | 2276 | } |
---|
| 2277 | else |
---|
| 2278 | { |
---|
[710] | 2279 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2280 | { |
---|
| 2281 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2282 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2283 | } |
---|
| 2284 | --idx; |
---|
[676] | 2285 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2286 | count.push_back(nZoomSizeServer[idx]); |
---|
[710] | 2287 | --idx; |
---|
[676] | 2288 | } |
---|
| 2289 | --idxDomain; |
---|
| 2290 | } |
---|
[887] | 2291 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 2292 | { |
---|
| 2293 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 2294 | |
---|
| 2295 | if (axis->isCompressible()) |
---|
| 2296 | { |
---|
| 2297 | start.push_back(axis->getOffsetWrittenIndexes()); |
---|
| 2298 | count.push_back(axis->getNumberWrittenIndexes()); |
---|
| 2299 | } |
---|
| 2300 | else |
---|
| 2301 | { |
---|
| 2302 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2303 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2304 | } |
---|
| 2305 | |
---|
| 2306 | --idxAxis; |
---|
| 2307 | --idx; |
---|
| 2308 | } |
---|
| 2309 | } |
---|
[1158] | 2310 | } |
---|
[676] | 2311 | } |
---|
| 2312 | else |
---|
[498] | 2313 | { |
---|
[887] | 2314 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[705] | 2315 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2316 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2317 | int numElement = axisDomainOrder.numElements(); |
---|
| 2318 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
[1025] | 2319 | int idx = domainList.size() * 2 + axisList.size() - 1;// nZoomBeginGlobal.size() - 1; |
---|
[705] | 2320 | |
---|
| 2321 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2322 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2323 | |
---|
| 2324 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2325 | { |
---|
[887] | 2326 | if (2 == axisDomainOrder(i)) |
---|
[705] | 2327 | { |
---|
| 2328 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[710] | 2329 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
[705] | 2330 | { |
---|
[1099] | 2331 | start.push_back(domain->zoom_jbegin - domain->global_zoom_jbegin); |
---|
| 2332 | count.push_back(domain->zoom_nj); |
---|
[705] | 2333 | } |
---|
| 2334 | --idx ; |
---|
[1143] | 2335 | |
---|
[1099] | 2336 | start.push_back(domain->zoom_ibegin - domain->global_zoom_ibegin); |
---|
| 2337 | count.push_back(domain->zoom_ni); |
---|
[705] | 2338 | --idx ; |
---|
| 2339 | --idxDomain; |
---|
| 2340 | } |
---|
[887] | 2341 | else if (1 == axisDomainOrder(i)) |
---|
[705] | 2342 | { |
---|
[1143] | 2343 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[1099] | 2344 | start.push_back(axis->zoom_begin - axis->global_zoom_begin); |
---|
| 2345 | count.push_back(axis->zoom_n); |
---|
[705] | 2346 | --idx; |
---|
[1025] | 2347 | --idxAxis; |
---|
[887] | 2348 | } |
---|
| 2349 | else |
---|
| 2350 | { |
---|
| 2351 | if (1 == axisDomainOrder.numElements()) |
---|
| 2352 | { |
---|
| 2353 | start.push_back(0); |
---|
| 2354 | count.push_back(1); |
---|
| 2355 | } |
---|
| 2356 | --idx; |
---|
| 2357 | } |
---|
[705] | 2358 | } |
---|
[498] | 2359 | } |
---|
[488] | 2360 | |
---|
[1158] | 2361 | |
---|
| 2362 | CTimer::get("Files : writing data").resume(); |
---|
[676] | 2363 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count); |
---|
[1158] | 2364 | CTimer::get("Files : writing data").suspend(); |
---|
| 2365 | |
---|
| 2366 | if (wtime) |
---|
| 2367 | { |
---|
| 2368 | CTimer::get("Files : writing time axis").resume(); |
---|
| 2369 | if ( wtimeData) |
---|
[692] | 2370 | { |
---|
[1158] | 2371 | // SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
| 2372 | // SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
| 2373 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2374 | SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
[692] | 2375 | } |
---|
[1158] | 2376 | if (wtimeCounter) |
---|
| 2377 | { |
---|
| 2378 | // SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1); |
---|
| 2379 | // if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
| 2380 | SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot); |
---|
| 2381 | if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
[586] | 2382 | |
---|
[1158] | 2383 | } |
---|
| 2384 | CTimer::get("Files : writing time axis").suspend(); |
---|
| 2385 | } |
---|
| 2386 | |
---|
[586] | 2387 | break; |
---|
[286] | 2388 | } |
---|
[567] | 2389 | } |
---|
[219] | 2390 | } |
---|
[498] | 2391 | catch (CNetCdfException& e) |
---|
| 2392 | { |
---|
| 2393 | StdString msg("On writing field data: "); |
---|
| 2394 | msg.append(fieldid); msg.append("\n"); |
---|
| 2395 | msg.append("In the context : "); |
---|
| 2396 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2397 | msg.append(e.what()); |
---|
[1130] | 2398 | ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg); |
---|
[498] | 2399 | } |
---|
[219] | 2400 | } |
---|
| 2401 | |
---|
| 2402 | //--------------------------------------------------------------- |
---|
| 2403 | |
---|
| 2404 | void CNc4DataOutput::writeTimeAxis_ |
---|
[347] | 2405 | (CField* field, |
---|
[343] | 2406 | const boost::shared_ptr<CCalendar> cal) |
---|
[219] | 2407 | { |
---|
| 2408 | StdOStringStream oss; |
---|
[1158] | 2409 | bool createInstantAxis=false ; |
---|
| 2410 | bool createCenteredAxis=false ; |
---|
| 2411 | bool createTimeCounterAxis=false ; |
---|
| 2412 | |
---|
[645] | 2413 | if (field->getOperationTimeType() == func::CFunctor::once) return ; |
---|
[488] | 2414 | |
---|
| 2415 | |
---|
[1158] | 2416 | StdString axisId ; |
---|
| 2417 | StdString axisBoundId; |
---|
[802] | 2418 | StdString timeid(getTimeCounterName()); |
---|
[614] | 2419 | StdString timeBoundId("axis_nbounds"); |
---|
[488] | 2420 | |
---|
[1158] | 2421 | StdString strTimeUnits ; |
---|
| 2422 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ; |
---|
| 2423 | else strTimeUnits="seconds since " ; |
---|
| 2424 | |
---|
| 2425 | if (field->getOperationTimeType() == func::CFunctor::instant) field->hasTimeInstant = true; |
---|
| 2426 | if (field->getOperationTimeType() == func::CFunctor::centered) field->hasTimeCentered = true; |
---|
| 2427 | |
---|
| 2428 | |
---|
| 2429 | if (field->file->time_counter.isEmpty()) |
---|
[488] | 2430 | { |
---|
[1158] | 2431 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2432 | if (field->hasTimeCentered) |
---|
| 2433 | { |
---|
| 2434 | timeCounterType=centered ; |
---|
| 2435 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2436 | } |
---|
| 2437 | if (field->hasTimeInstant) |
---|
| 2438 | { |
---|
| 2439 | if (timeCounterType==none) timeCounterType=instant ; |
---|
| 2440 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2441 | } |
---|
[488] | 2442 | } |
---|
[1158] | 2443 | else if (field->file->time_counter==CFile::time_counter_attr::instant) |
---|
| 2444 | { |
---|
| 2445 | if (field->hasTimeCentered) |
---|
| 2446 | { |
---|
| 2447 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2448 | } |
---|
| 2449 | if (field->hasTimeInstant) |
---|
| 2450 | { |
---|
| 2451 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2452 | timeCounterType=instant ; |
---|
| 2453 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2454 | } |
---|
| 2455 | } |
---|
| 2456 | else if (field->file->time_counter==CFile::time_counter_attr::centered) |
---|
| 2457 | { |
---|
| 2458 | if (field->hasTimeCentered) |
---|
| 2459 | { |
---|
| 2460 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2461 | timeCounterType=centered ; |
---|
| 2462 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2463 | } |
---|
| 2464 | if (field->hasTimeInstant) |
---|
| 2465 | { |
---|
| 2466 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2467 | } |
---|
| 2468 | } |
---|
| 2469 | else if (field->file->time_counter==CFile::time_counter_attr::instant_exclusive) |
---|
| 2470 | { |
---|
| 2471 | if (field->hasTimeCentered) |
---|
| 2472 | { |
---|
| 2473 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2474 | } |
---|
| 2475 | if (field->hasTimeInstant) |
---|
| 2476 | { |
---|
| 2477 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2478 | timeCounterType=instant ; |
---|
| 2479 | } |
---|
| 2480 | } |
---|
| 2481 | else if (field->file->time_counter==CFile::time_counter_attr::centered_exclusive) |
---|
| 2482 | { |
---|
| 2483 | if (field->hasTimeCentered) |
---|
| 2484 | { |
---|
| 2485 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2486 | timeCounterType=centered ; |
---|
| 2487 | } |
---|
| 2488 | if (field->hasTimeInstant) |
---|
| 2489 | { |
---|
| 2490 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2491 | } |
---|
| 2492 | } |
---|
| 2493 | else if (field->file->time_counter==CFile::time_counter_attr::exclusive) |
---|
| 2494 | { |
---|
| 2495 | if (field->hasTimeCentered) |
---|
| 2496 | { |
---|
| 2497 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2498 | if (timeCounterType==instant) createInstantAxis=true ; |
---|
| 2499 | timeCounterType=centered ; |
---|
| 2500 | } |
---|
| 2501 | if (field->hasTimeInstant) |
---|
| 2502 | { |
---|
| 2503 | if (timeCounterType==none) |
---|
| 2504 | { |
---|
| 2505 | createTimeCounterAxis=true ; |
---|
| 2506 | timeCounterType=instant ; |
---|
| 2507 | } |
---|
| 2508 | if (timeCounterType==centered) |
---|
| 2509 | { |
---|
| 2510 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2511 | } |
---|
| 2512 | } |
---|
| 2513 | } |
---|
| 2514 | else if (field->file->time_counter==CFile::time_counter_attr::none) |
---|
| 2515 | { |
---|
| 2516 | if (field->hasTimeCentered) |
---|
| 2517 | { |
---|
| 2518 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2519 | } |
---|
| 2520 | if (field->hasTimeInstant) |
---|
| 2521 | { |
---|
| 2522 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2523 | } |
---|
| 2524 | } |
---|
| 2525 | else if (field->file->time_counter==CFile::time_counter_attr::record) |
---|
| 2526 | { |
---|
| 2527 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2528 | timeCounterType=record ; |
---|
| 2529 | if (field->hasTimeCentered) |
---|
| 2530 | { |
---|
| 2531 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2532 | } |
---|
| 2533 | if (field->hasTimeInstant) |
---|
| 2534 | { |
---|
| 2535 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2536 | } |
---|
| 2537 | } |
---|
| 2538 | |
---|
| 2539 | if (createInstantAxis) |
---|
| 2540 | { |
---|
| 2541 | axisId="time_instant" ; |
---|
| 2542 | axisBoundId="time_instant_bounds"; |
---|
| 2543 | hasTimeInstant=true ; |
---|
| 2544 | } |
---|
[488] | 2545 | |
---|
[1158] | 2546 | if (createCenteredAxis) |
---|
| 2547 | { |
---|
| 2548 | axisId="time_centered" ; |
---|
| 2549 | axisBoundId="time_centered_bounds"; |
---|
| 2550 | hasTimeCentered=true ; |
---|
| 2551 | } |
---|
| 2552 | |
---|
| 2553 | |
---|
[498] | 2554 | try |
---|
[219] | 2555 | { |
---|
[1158] | 2556 | std::vector<StdString> dims; |
---|
| 2557 | |
---|
| 2558 | if (createInstantAxis || createCenteredAxis) |
---|
| 2559 | { |
---|
| 2560 | // Adding time_instant or time_centered |
---|
| 2561 | dims.push_back(timeid); |
---|
| 2562 | if (!SuperClassWriter::varExist(axisId)) |
---|
| 2563 | { |
---|
| 2564 | SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims); |
---|
[488] | 2565 | |
---|
[1158] | 2566 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
| 2567 | StdOStringStream oss2; |
---|
| 2568 | StdString strInitdate=oss2.str() ; |
---|
| 2569 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
| 2570 | this->writeTimeAxisAttributes(axisId, cal->getType(),strTimeUnits+strTimeOrigin, |
---|
| 2571 | strTimeOrigin, axisBoundId); |
---|
| 2572 | } |
---|
[219] | 2573 | |
---|
[1158] | 2574 | // Adding time_instant_bounds or time_centered_bounds variables |
---|
| 2575 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2576 | { |
---|
| 2577 | dims.clear() ; |
---|
| 2578 | dims.push_back(timeid); |
---|
| 2579 | dims.push_back(timeBoundId); |
---|
| 2580 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2581 | } |
---|
[498] | 2582 | } |
---|
[488] | 2583 | |
---|
[1158] | 2584 | if (createTimeCounterAxis) |
---|
[498] | 2585 | { |
---|
[692] | 2586 | // Adding time_counter |
---|
[1158] | 2587 | axisId = getTimeCounterName(); |
---|
[802] | 2588 | axisBoundId = getTimeCounterName() + "_bounds"; |
---|
[692] | 2589 | dims.clear(); |
---|
| 2590 | dims.push_back(timeid); |
---|
[1158] | 2591 | if (!SuperClassWriter::varExist(axisId)) |
---|
[692] | 2592 | { |
---|
[1158] | 2593 | SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims); |
---|
| 2594 | SuperClassWriter::addAttribute("axis", string("T"), &axisId); |
---|
[488] | 2595 | |
---|
[1158] | 2596 | if (field->file->time_counter.isEmpty() || |
---|
| 2597 | (field->file->time_counter != CFile::time_counter_attr::record)) |
---|
[692] | 2598 | { |
---|
| 2599 | CDate timeOrigin = cal->getTimeOrigin(); |
---|
| 2600 | StdString strTimeOrigin = timeOrigin.toString(); |
---|
[498] | 2601 | |
---|
[1158] | 2602 | this->writeTimeAxisAttributes(axisId, cal->getType(), |
---|
| 2603 | strTimeUnits+strTimeOrigin, |
---|
[692] | 2604 | strTimeOrigin, axisBoundId); |
---|
| 2605 | } |
---|
| 2606 | } |
---|
| 2607 | |
---|
| 2608 | // Adding time_counter_bound dimension |
---|
[1158] | 2609 | if (field->file->time_counter.isEmpty() || (field->file->time_counter != CFile::time_counter_attr::record)) |
---|
[692] | 2610 | { |
---|
| 2611 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2612 | { |
---|
| 2613 | dims.clear(); |
---|
| 2614 | dims.push_back(timeid); |
---|
| 2615 | dims.push_back(timeBoundId); |
---|
| 2616 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2617 | } |
---|
| 2618 | } |
---|
[498] | 2619 | } |
---|
[488] | 2620 | } |
---|
[498] | 2621 | catch (CNetCdfException& e) |
---|
[488] | 2622 | { |
---|
[498] | 2623 | StdString msg("On writing time axis data: "); |
---|
| 2624 | msg.append("In the context : "); |
---|
| 2625 | CContext* context = CContext::getCurrent() ; |
---|
| 2626 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2627 | msg.append(e.what()); |
---|
| 2628 | ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \ |
---|
| 2629 | const boost::shared_ptr<CCalendar> cal)", << msg); |
---|
[488] | 2630 | } |
---|
[219] | 2631 | } |
---|
| 2632 | |
---|
| 2633 | //--------------------------------------------------------------- |
---|
[488] | 2634 | |
---|
[219] | 2635 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
| 2636 | const StdString & calendar, |
---|
| 2637 | const StdString & units, |
---|
| 2638 | const StdString & time_origin, |
---|
[488] | 2639 | const StdString & time_bounds, |
---|
[219] | 2640 | const StdString & standard_name, |
---|
[613] | 2641 | const StdString & long_name) |
---|
[219] | 2642 | { |
---|
[498] | 2643 | try |
---|
| 2644 | { |
---|
| 2645 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2646 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
| 2647 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
| 2648 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
| 2649 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
| 2650 | SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name); |
---|
| 2651 | } |
---|
| 2652 | catch (CNetCdfException& e) |
---|
| 2653 | { |
---|
| 2654 | StdString msg("On writing time axis Attribute: "); |
---|
| 2655 | msg.append("In the context : "); |
---|
| 2656 | CContext* context = CContext::getCurrent() ; |
---|
| 2657 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2658 | msg.append(e.what()); |
---|
| 2659 | ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2660 | const StdString & calendar,\ |
---|
| 2661 | const StdString & units, \ |
---|
| 2662 | const StdString & time_origin, \ |
---|
| 2663 | const StdString & time_bounds, \ |
---|
| 2664 | const StdString & standard_name, \ |
---|
| 2665 | const StdString & long_name)", << msg); |
---|
[498] | 2666 | } |
---|
[219] | 2667 | } |
---|
[488] | 2668 | |
---|
[219] | 2669 | //--------------------------------------------------------------- |
---|
| 2670 | |
---|
| 2671 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
| 2672 | const StdString & axis, |
---|
| 2673 | const StdString & standard_name, |
---|
| 2674 | const StdString & long_name, |
---|
| 2675 | const StdString & units, |
---|
| 2676 | const StdString & nav_model) |
---|
| 2677 | { |
---|
[498] | 2678 | try |
---|
| 2679 | { |
---|
[613] | 2680 | if (!axis.empty()) |
---|
| 2681 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
| 2682 | |
---|
[498] | 2683 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2684 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
| 2685 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
[973] | 2686 | // SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
[498] | 2687 | } |
---|
| 2688 | catch (CNetCdfException& e) |
---|
| 2689 | { |
---|
| 2690 | StdString msg("On writing Axis Attribute: "); |
---|
| 2691 | msg.append("In the context : "); |
---|
| 2692 | CContext* context = CContext::getCurrent() ; |
---|
| 2693 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2694 | msg.append(e.what()); |
---|
| 2695 | ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2696 | const StdString & axis, \ |
---|
| 2697 | const StdString & standard_name, \ |
---|
| 2698 | const StdString & long_name, \ |
---|
| 2699 | const StdString & units, \ |
---|
| 2700 | const StdString & nav_model)", << msg); |
---|
[498] | 2701 | } |
---|
[219] | 2702 | } |
---|
| 2703 | |
---|
| 2704 | //--------------------------------------------------------------- |
---|
[488] | 2705 | |
---|
[219] | 2706 | void CNc4DataOutput::writeLocalAttributes |
---|
| 2707 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
| 2708 | { |
---|
[498] | 2709 | try |
---|
| 2710 | { |
---|
[318] | 2711 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
| 2712 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
| 2713 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
| 2714 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
[498] | 2715 | } |
---|
| 2716 | catch (CNetCdfException& e) |
---|
| 2717 | { |
---|
| 2718 | StdString msg("On writing Local Attributes: "); |
---|
| 2719 | msg.append("In the context : "); |
---|
| 2720 | CContext* context = CContext::getCurrent() ; |
---|
| 2721 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2722 | msg.append(e.what()); |
---|
| 2723 | ERROR("CNc4DataOutput::writeLocalAttributes \ |
---|
| 2724 | (int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg); |
---|
| 2725 | } |
---|
| 2726 | |
---|
[219] | 2727 | } |
---|
| 2728 | |
---|
[628] | 2729 | void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid, |
---|
| 2730 | int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
[391] | 2731 | { |
---|
| 2732 | CArray<int,1> array(2) ; |
---|
| 2733 | |
---|
[498] | 2734 | try |
---|
| 2735 | { |
---|
| 2736 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
| 2737 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
[629] | 2738 | array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1; |
---|
[498] | 2739 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
| 2740 | array=ni_glo,nj_glo ; |
---|
| 2741 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
| 2742 | array=ni,nj ; |
---|
| 2743 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
[819] | 2744 | array=ibegin+1,jbegin+1 ; |
---|
[498] | 2745 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
[819] | 2746 | array=ibegin+ni-1+1,jbegin+nj-1+1 ; |
---|
[498] | 2747 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
| 2748 | array=0,0 ; |
---|
| 2749 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
| 2750 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
| 2751 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
| 2752 | /* |
---|
| 2753 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
| 2754 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
| 2755 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
| 2756 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
| 2757 | */ |
---|
| 2758 | } |
---|
| 2759 | catch (CNetCdfException& e) |
---|
| 2760 | { |
---|
[628] | 2761 | StdString msg("On writing Local Attributes IOIPSL \n"); |
---|
[498] | 2762 | msg.append("In the context : "); |
---|
| 2763 | CContext* context = CContext::getCurrent() ; |
---|
| 2764 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2765 | msg.append(e.what()); |
---|
| 2766 | ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \ |
---|
| 2767 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg); |
---|
| 2768 | } |
---|
[391] | 2769 | } |
---|
[219] | 2770 | //--------------------------------------------------------------- |
---|
| 2771 | |
---|
| 2772 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
| 2773 | const StdString & description, |
---|
| 2774 | const StdString & conventions, |
---|
| 2775 | const StdString & production, |
---|
| 2776 | const StdString & timeStamp) |
---|
| 2777 | { |
---|
[498] | 2778 | try |
---|
| 2779 | { |
---|
| 2780 | SuperClassWriter::addAttribute("name" , name); |
---|
| 2781 | SuperClassWriter::addAttribute("description", description); |
---|
[613] | 2782 | SuperClassWriter::addAttribute("title" , description); |
---|
| 2783 | SuperClassWriter::addAttribute("Conventions", conventions); |
---|
[1158] | 2784 | // SuperClassWriter::addAttribute("production" , production); |
---|
| 2785 | |
---|
| 2786 | StdString timeStampStr ; |
---|
| 2787 | if (file->time_stamp_name.isEmpty()) timeStampStr="timeStamp" ; |
---|
| 2788 | else timeStampStr=file->time_stamp_name ; |
---|
| 2789 | SuperClassWriter::addAttribute(timeStampStr, timeStamp); |
---|
| 2790 | |
---|
| 2791 | StdString uuidName ; |
---|
| 2792 | if (file->uuid_name.isEmpty()) uuidName="uuid" ; |
---|
| 2793 | else uuidName=file->uuid_name ; |
---|
| 2794 | |
---|
| 2795 | if (file->uuid_format.isEmpty()) SuperClassWriter::addAttribute(uuidName, getUuidStr()); |
---|
| 2796 | else SuperClassWriter::addAttribute(uuidName, getUuidStr(file->uuid_format)); |
---|
| 2797 | |
---|
[498] | 2798 | } |
---|
| 2799 | catch (CNetCdfException& e) |
---|
| 2800 | { |
---|
| 2801 | StdString msg("On writing File Attributes \n "); |
---|
| 2802 | msg.append("In the context : "); |
---|
| 2803 | CContext* context = CContext::getCurrent() ; |
---|
| 2804 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2805 | msg.append(e.what()); |
---|
| 2806 | ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \ |
---|
| 2807 | const StdString & description, \ |
---|
| 2808 | const StdString & conventions, \ |
---|
| 2809 | const StdString & production, \ |
---|
| 2810 | const StdString & timeStamp)", << msg); |
---|
| 2811 | } |
---|
[219] | 2812 | } |
---|
| 2813 | |
---|
| 2814 | //--------------------------------------------------------------- |
---|
| 2815 | |
---|
| 2816 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
| 2817 | int data_dim, |
---|
| 2818 | int data_ni, |
---|
| 2819 | int data_nj, |
---|
| 2820 | int data_ibegin, |
---|
| 2821 | int data_jbegin) |
---|
| 2822 | { |
---|
[498] | 2823 | try |
---|
| 2824 | { |
---|
| 2825 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
| 2826 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
| 2827 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
| 2828 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
| 2829 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
| 2830 | } |
---|
| 2831 | catch (CNetCdfException& e) |
---|
| 2832 | { |
---|
| 2833 | StdString msg("On writing Mask Attributes \n "); |
---|
| 2834 | msg.append("In the context : "); |
---|
| 2835 | CContext* context = CContext::getCurrent() ; |
---|
| 2836 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2837 | msg.append(e.what()); |
---|
| 2838 | ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \ |
---|
| 2839 | int data_dim, \ |
---|
| 2840 | int data_ni, \ |
---|
| 2841 | int data_nj, \ |
---|
| 2842 | int data_ibegin, \ |
---|
| 2843 | int data_jbegin)", << msg); |
---|
| 2844 | } |
---|
[219] | 2845 | } |
---|
| 2846 | |
---|
| 2847 | ///-------------------------------------------------------------- |
---|
| 2848 | |
---|
[1158] | 2849 | StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit) |
---|
[707] | 2850 | { |
---|
| 2851 | std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time); |
---|
| 2852 | if (it == timeToRecordCache.end()) |
---|
| 2853 | { |
---|
[802] | 2854 | StdString timeAxisBoundsId(getTimeCounterName() + "_bounds"); |
---|
[1158] | 2855 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_centered_bounds"; |
---|
| 2856 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_instant_bounds"; |
---|
[707] | 2857 | |
---|
| 2858 | CArray<double,2> timeAxisBounds; |
---|
[1158] | 2859 | std::vector<StdSize> dimSize(SuperClassWriter::getDimensions(timeAxisBoundsId)) ; |
---|
| 2860 | |
---|
[707] | 2861 | StdSize record = 0; |
---|
| 2862 | double dtime(time); |
---|
[1158] | 2863 | for (int n = dimSize[0] - 1; n >= 0; n--) |
---|
[707] | 2864 | { |
---|
[1158] | 2865 | SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective, n); |
---|
| 2866 | timeAxisBounds*=factorUnit ; |
---|
| 2867 | if (timeAxisBounds(1, 0) < dtime) |
---|
[707] | 2868 | { |
---|
| 2869 | record = n + 1; |
---|
| 2870 | break; |
---|
| 2871 | } |
---|
| 2872 | } |
---|
| 2873 | it = timeToRecordCache.insert(std::make_pair(time, record)).first; |
---|
| 2874 | } |
---|
| 2875 | return it->second; |
---|
| 2876 | } |
---|
[774] | 2877 | |
---|
| 2878 | ///-------------------------------------------------------------- |
---|
| 2879 | |
---|
| 2880 | bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const |
---|
| 2881 | { |
---|
| 2882 | return (this->writtenDomains.find(domainName) != this->writtenDomains.end()); |
---|
| 2883 | } |
---|
| 2884 | |
---|
| 2885 | bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const |
---|
| 2886 | { |
---|
| 2887 | return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end()); |
---|
| 2888 | } |
---|
| 2889 | |
---|
| 2890 | bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const |
---|
| 2891 | { |
---|
| 2892 | return (this->writtenAxis.find(axisName) != this->writtenAxis.end()); |
---|
| 2893 | } |
---|
| 2894 | |
---|
| 2895 | bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const |
---|
| 2896 | { |
---|
| 2897 | return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end()); |
---|
| 2898 | } |
---|
| 2899 | |
---|
[887] | 2900 | bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const |
---|
| 2901 | { |
---|
| 2902 | return (this->writtenScalar.find(scalarName) != this->writtenScalar.end()); |
---|
| 2903 | } |
---|
| 2904 | |
---|
[774] | 2905 | void CNc4DataOutput::setWrittenDomain(const std::string& domainName) |
---|
| 2906 | { |
---|
| 2907 | this->writtenDomains.insert(domainName); |
---|
| 2908 | } |
---|
| 2909 | |
---|
| 2910 | void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName) |
---|
| 2911 | { |
---|
| 2912 | this->writtenCompressedDomains.insert(domainName); |
---|
| 2913 | } |
---|
| 2914 | |
---|
| 2915 | void CNc4DataOutput::setWrittenAxis(const std::string& axisName) |
---|
| 2916 | { |
---|
| 2917 | this->writtenAxis.insert(axisName); |
---|
| 2918 | } |
---|
| 2919 | |
---|
| 2920 | void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName) |
---|
| 2921 | { |
---|
| 2922 | this->writtenCompressedAxis.insert(axisName); |
---|
| 2923 | } |
---|
[887] | 2924 | |
---|
| 2925 | void CNc4DataOutput::setWrittenScalar(const std::string& scalarName) |
---|
| 2926 | { |
---|
| 2927 | this->writtenScalar.insert(scalarName); |
---|
| 2928 | } |
---|
[335] | 2929 | } // namespace xios |
---|