[657] | 1 | /*! |
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| 2 | \file domain_algorithm_interpolate_from_file.cpp |
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| 3 | \author Ha NGUYEN |
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| 4 | \since 09 Jul 2015 |
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[689] | 5 | \date 15 Sep 2015 |
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[657] | 6 | |
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| 7 | \brief Algorithm for interpolation on a domain. |
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| 8 | */ |
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[689] | 9 | #include "domain_algorithm_interpolate.hpp" |
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[657] | 10 | #include <boost/unordered_map.hpp> |
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| 11 | #include "context.hpp" |
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| 12 | #include "context_client.hpp" |
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| 13 | #include "distribution_client.hpp" |
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| 14 | #include "client_server_mapping_distributed.hpp" |
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[660] | 15 | #include "netcdf.hpp" |
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[688] | 16 | #include "mapper.hpp" |
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[821] | 17 | #include "mpi_tag.hpp" |
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[933] | 18 | #include "domain.hpp" |
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| 19 | #include "grid_transformation_factory_impl.hpp" |
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| 20 | #include "interpolate_domain.hpp" |
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| 21 | #include "grid.hpp" |
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[657] | 22 | |
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| 23 | namespace xios { |
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[933] | 24 | CGenericAlgorithmTransformation* CDomainAlgorithmInterpolate::create(CGrid* gridDst, CGrid* gridSrc, |
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| 25 | CTransformation<CDomain>* transformation, |
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| 26 | int elementPositionInGrid, |
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| 27 | std::map<int, int>& elementPositionInGridSrc2ScalarPosition, |
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| 28 | std::map<int, int>& elementPositionInGridSrc2AxisPosition, |
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| 29 | std::map<int, int>& elementPositionInGridSrc2DomainPosition, |
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| 30 | std::map<int, int>& elementPositionInGridDst2ScalarPosition, |
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| 31 | std::map<int, int>& elementPositionInGridDst2AxisPosition, |
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| 32 | std::map<int, int>& elementPositionInGridDst2DomainPosition) |
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| 33 | { |
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| 34 | std::vector<CDomain*> domainListDestP = gridDst->getDomains(); |
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| 35 | std::vector<CDomain*> domainListSrcP = gridSrc->getDomains(); |
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[657] | 36 | |
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[933] | 37 | CInterpolateDomain* interpolateDomain = dynamic_cast<CInterpolateDomain*> (transformation); |
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[978] | 38 | int domainDstIndex = elementPositionInGridDst2DomainPosition[elementPositionInGrid]; |
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| 39 | int domainSrcIndex = elementPositionInGridSrc2DomainPosition[elementPositionInGrid]; |
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[933] | 40 | |
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| 41 | return (new CDomainAlgorithmInterpolate(domainListDestP[domainDstIndex], domainListSrcP[domainSrcIndex], interpolateDomain)); |
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| 42 | } |
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| 43 | |
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| 44 | bool CDomainAlgorithmInterpolate::registerTrans() |
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| 45 | { |
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| 46 | CGridTransformationFactory<CDomain>::registerTransformation(TRANS_INTERPOLATE_DOMAIN, create); |
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| 47 | } |
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| 48 | |
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[689] | 49 | CDomainAlgorithmInterpolate::CDomainAlgorithmInterpolate(CDomain* domainDestination, CDomain* domainSource, CInterpolateDomain* interpDomain) |
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[1021] | 50 | : CDomainAlgorithmTransformation(domainDestination, domainSource), interpDomain_(interpDomain), writeToFile_(false), readFromFile_(false) |
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[657] | 51 | { |
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[1021] | 52 | CContext* context = CContext::getCurrent(); |
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[657] | 53 | interpDomain_->checkValid(domainSource); |
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[1264] | 54 | |
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| 55 | detectMissingValue = interpDomain_->detect_missing_value ; |
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| 56 | renormalize = interpDomain_->renormalize ; |
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| 57 | quantity = interpDomain_->quantity ; |
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[1269] | 58 | |
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| 59 | if (interpDomain_->read_write_convention == CInterpolateDomain::read_write_convention_attr::fortran) fortranConvention=true ; |
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| 60 | else fortranConvention=false ; |
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[1264] | 61 | |
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[1021] | 62 | fileToReadWrite_ = "xios_interpolation_weights_"; |
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| 63 | |
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| 64 | if (interpDomain_->weight_filename.isEmpty()) |
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| 65 | { |
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| 66 | fileToReadWrite_ += context->getId() + "_" + |
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| 67 | domainSource->getDomainOutputName() + "_" + |
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| 68 | domainDestination->getDomainOutputName() + ".nc"; |
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| 69 | } |
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| 70 | else |
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| 71 | fileToReadWrite_ = interpDomain_->weight_filename; |
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| 72 | |
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| 73 | ifstream f(fileToReadWrite_.c_str()); |
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| 74 | switch (interpDomain_->mode) |
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| 75 | { |
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| 76 | case CInterpolateDomain::mode_attr::read: |
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| 77 | readFromFile_ = true; |
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| 78 | break; |
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| 79 | case CInterpolateDomain::mode_attr::compute: |
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| 80 | readFromFile_ = false; |
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| 81 | break; |
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| 82 | case CInterpolateDomain::mode_attr::read_or_compute: |
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| 83 | if (!f.good()) |
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| 84 | readFromFile_ = false; |
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| 85 | else |
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| 86 | readFromFile_ = true; |
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| 87 | break; |
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| 88 | default: |
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| 89 | break; |
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| 90 | } |
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| 91 | |
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| 92 | writeToFile_ = interpDomain_->write_weight; |
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| 93 | |
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[657] | 94 | } |
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| 95 | |
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[689] | 96 | /*! |
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| 97 | Compute remap with integrated remap calculation module |
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| 98 | */ |
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| 99 | void CDomainAlgorithmInterpolate::computeRemap() |
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[688] | 100 | { |
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| 101 | using namespace sphereRemap; |
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| 102 | |
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| 103 | CContext* context = CContext::getCurrent(); |
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| 104 | CContextClient* client=context->client; |
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| 105 | int clientRank = client->clientRank; |
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| 106 | int i, j, k, idx; |
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[689] | 107 | std::vector<double> srcPole(3,0), dstPole(3,0); |
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[915] | 108 | int orderInterp = interpDomain_->order.getValue(); |
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[688] | 109 | |
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[846] | 110 | |
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[743] | 111 | const double poleValue = 90.0; |
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| 112 | const int constNVertex = 4; // Value by default number of vertex for rectangular domain |
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[688] | 113 | int nVertexSrc, nVertexDest; |
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| 114 | nVertexSrc = nVertexDest = constNVertex; |
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| 115 | |
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| 116 | // First of all, try to retrieve the boundary values of domain source and domain destination |
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| 117 | int localDomainSrcSize = domainSrc_->i_index.numElements(); |
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| 118 | int niSrc = domainSrc_->ni.getValue(), njSrc = domainSrc_->nj.getValue(); |
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| 119 | bool hasBoundSrc = domainSrc_->hasBounds; |
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| 120 | if (hasBoundSrc) nVertexSrc = domainSrc_->nvertex.getValue(); |
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| 121 | CArray<double,2> boundsLonSrc(nVertexSrc,localDomainSrcSize); |
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| 122 | CArray<double,2> boundsLatSrc(nVertexSrc,localDomainSrcSize); |
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| 123 | |
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[953] | 124 | if (domainSrc_->hasPole) srcPole[2] = 1; |
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[688] | 125 | if (hasBoundSrc) // Suppose that domain source is curvilinear or unstructured |
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| 126 | { |
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| 127 | if (!domainSrc_->bounds_lon_2d.isEmpty()) |
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| 128 | { |
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| 129 | for (j = 0; j < njSrc; ++j) |
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| 130 | for (i = 0; i < niSrc; ++i) |
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| 131 | { |
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| 132 | k=j*niSrc+i; |
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| 133 | for(int n=0;n<nVertexSrc;++n) |
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| 134 | { |
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| 135 | boundsLonSrc(n,k) = domainSrc_->bounds_lon_2d(n,i,j); |
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| 136 | boundsLatSrc(n,k) = domainSrc_->bounds_lat_2d(n,i,j); |
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| 137 | } |
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| 138 | } |
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| 139 | } |
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| 140 | else |
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| 141 | { |
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| 142 | boundsLonSrc = domainSrc_->bounds_lon_1d; |
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| 143 | boundsLatSrc = domainSrc_->bounds_lat_1d; |
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| 144 | } |
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| 145 | } |
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| 146 | else // if domain source is rectilinear, not do anything now |
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| 147 | { |
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[809] | 148 | CArray<double,1> lon_g ; |
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| 149 | CArray<double,1> lat_g ; |
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[753] | 150 | |
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[809] | 151 | if (!domainSrc_->lonvalue_1d.isEmpty() && !domainSrc_->latvalue_1d.isEmpty()) |
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[808] | 152 | { |
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[915] | 153 | domainSrc_->AllgatherRectilinearLonLat(domainSrc_->lonvalue_1d,domainSrc_->latvalue_1d, lon_g,lat_g) ; |
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| 154 | } |
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| 155 | else if (! domainSrc_->latvalue_rectilinear_read_from_file.isEmpty() && ! domainSrc_->lonvalue_rectilinear_read_from_file.isEmpty() ) |
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[808] | 156 | { |
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[915] | 157 | lat_g=domainSrc_->latvalue_rectilinear_read_from_file ; |
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| 158 | lon_g=domainSrc_->lonvalue_rectilinear_read_from_file ; |
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| 159 | } |
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| 160 | else if (!domainSrc_->lon_start.isEmpty() && !domainSrc_->lon_end.isEmpty() && |
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| 161 | !domainSrc_->lat_start.isEmpty() && !domainSrc_->lat_end.isEmpty()) |
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| 162 | { |
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| 163 | double step=(domainSrc_->lon_end-domainSrc_->lon_start)/domainSrc_->ni_glo ; |
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| 164 | for (int i=0; i<domainSrc_->ni_glo; ++i) lon_g(i)=domainSrc_->lon_start+i*step ; |
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| 165 | step=(domainSrc_->lat_end-domainSrc_->lat_start)/domainSrc_->nj_glo ; |
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| 166 | for (int i=0; i<domainSrc_->ni_glo; ++i) lat_g(i)=domainSrc_->lat_start+i*step ; |
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| 167 | } |
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| 168 | else ERROR("void CDomainAlgorithmInterpolate::computeRemap()",<<"Cannot compute bounds for rectilinear domain") ; |
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[808] | 169 | |
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[688] | 170 | nVertexSrc = constNVertex; |
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[809] | 171 | domainSrc_->fillInRectilinearBoundLonLat(lon_g,lat_g, boundsLonSrc, boundsLatSrc); |
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[688] | 172 | } |
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| 173 | |
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[743] | 174 | std::map<int,std::vector<std::pair<int,double> > > interpMapValueNorthPole; |
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| 175 | std::map<int,std::vector<std::pair<int,double> > > interpMapValueSouthPole; |
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| 176 | |
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[688] | 177 | int localDomainDestSize = domainDest_->i_index.numElements(); |
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| 178 | int niDest = domainDest_->ni.getValue(), njDest = domainDest_->nj.getValue(); |
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| 179 | bool hasBoundDest = domainDest_->hasBounds; |
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| 180 | if (hasBoundDest) nVertexDest = domainDest_->nvertex.getValue(); |
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| 181 | CArray<double,2> boundsLonDest(nVertexDest,localDomainDestSize); |
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| 182 | CArray<double,2> boundsLatDest(nVertexDest,localDomainDestSize); |
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| 183 | |
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[953] | 184 | if (domainDest_->hasPole) dstPole[2] = 1; |
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[688] | 185 | if (hasBoundDest) |
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| 186 | { |
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| 187 | if (!domainDest_->bounds_lon_2d.isEmpty()) |
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| 188 | { |
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| 189 | for (j = 0; j < njDest; ++j) |
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| 190 | for (i = 0; i < niDest; ++i) |
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| 191 | { |
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| 192 | k=j*niDest+i; |
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| 193 | for(int n=0;n<nVertexDest;++n) |
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| 194 | { |
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| 195 | boundsLonDest(n,k) = domainDest_->bounds_lon_2d(n,i,j); |
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| 196 | boundsLatDest(n,k) = domainDest_->bounds_lat_2d(n,i,j); |
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| 197 | } |
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| 198 | } |
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| 199 | } |
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| 200 | else |
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| 201 | { |
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| 202 | boundsLonDest = domainDest_->bounds_lon_1d; |
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| 203 | boundsLatDest = domainDest_->bounds_lat_1d; |
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| 204 | } |
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| 205 | } |
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| 206 | else |
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| 207 | { |
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[753] | 208 | bool isNorthPole = false; |
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| 209 | bool isSouthPole = false; |
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[809] | 210 | |
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| 211 | CArray<double,1> lon_g ; |
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| 212 | CArray<double,1> lat_g ; |
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| 213 | |
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| 214 | if (!domainDest_->lonvalue_1d.isEmpty() && !domainDest_->latvalue_1d.isEmpty()) |
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| 215 | { |
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[949] | 216 | domainDest_->AllgatherRectilinearLonLat(domainDest_->lonvalue_1d,domainDest_->latvalue_1d, lon_g,lat_g) ; |
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| 217 | } |
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| 218 | else if (! domainDest_->latvalue_rectilinear_read_from_file.isEmpty() && ! domainDest_->lonvalue_rectilinear_read_from_file.isEmpty() ) |
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[809] | 219 | { |
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[949] | 220 | lat_g=domainDest_->latvalue_rectilinear_read_from_file ; |
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| 221 | lon_g=domainDest_->lonvalue_rectilinear_read_from_file ; |
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| 222 | } |
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| 223 | else if (!domainDest_->lon_start.isEmpty() && !domainDest_->lon_end.isEmpty() && |
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| 224 | !domainDest_->lat_start.isEmpty() && !domainDest_->lat_end.isEmpty()) |
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| 225 | { |
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| 226 | double step=(domainDest_->lon_end-domainDest_->lon_start)/domainDest_->ni_glo ; |
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| 227 | for(int i=0; i<domainDest_->ni_glo; ++i) lon_g(i)=domainDest_->lon_start+i*step ; |
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| 228 | step=(domainDest_->lat_end-domainDest_->lat_start)/domainDest_->nj_glo ; |
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| 229 | for(int i=0; i<domainDest_->ni_glo; ++i) lat_g(i)=domainDest_->lat_start+i*step ; |
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| 230 | } |
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| 231 | else ERROR("void CDomainAlgorithmInterpolate::computeRemap()",<<"Cannot compute bounds for rectilinear domain") ; |
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| 232 | |
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[809] | 233 | if (std::abs(poleValue - std::abs(lat_g(0))) < NumTraits<double>::epsilon()) isNorthPole = true; |
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| 234 | if (std::abs(poleValue - std::abs(lat_g(domainDest_->nj_glo-1))) < NumTraits<double>::epsilon()) isSouthPole = true; |
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| 235 | |
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[821] | 236 | |
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| 237 | |
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| 238 | |
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[743] | 239 | if (isNorthPole && (0 == domainDest_->jbegin.getValue())) |
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| 240 | { |
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| 241 | int ibegin = domainDest_->ibegin.getValue(); |
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| 242 | for (i = 0; i < niDest; ++i) |
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| 243 | { |
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| 244 | interpMapValueNorthPole[i+ibegin]; |
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| 245 | } |
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| 246 | } |
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| 247 | |
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| 248 | if (isSouthPole && (domainDest_->nj_glo.getValue() == (domainDest_->jbegin.getValue() + njDest))) |
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| 249 | { |
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| 250 | int ibegin = domainDest_->ibegin.getValue(); |
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| 251 | int njGlo = domainDest_->nj_glo.getValue(); |
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| 252 | int niGlo = domainDest_->ni_glo.getValue(); |
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| 253 | for (i = 0; i < niDest; ++i) |
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| 254 | { |
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| 255 | k = (njGlo - 1)*niGlo + i + ibegin; |
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| 256 | interpMapValueSouthPole[k]; |
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| 257 | } |
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| 258 | } |
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| 259 | |
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[688] | 260 | // Ok, fill in boundary values for rectangular domain |
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[689] | 261 | nVertexDest = constNVertex; |
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[809] | 262 | domainDest_->fillInRectilinearBoundLonLat(lon_g,lat_g, boundsLonDest, boundsLatDest); |
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[688] | 263 | } |
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| 264 | |
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[709] | 265 | |
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| 266 | |
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[688] | 267 | // Ok, now use mapper to calculate |
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| 268 | int nSrcLocal = domainSrc_->i_index.numElements(); |
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| 269 | int nDstLocal = domainDest_->i_index.numElements(); |
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[709] | 270 | long int * globalSrc = new long int [nSrcLocal]; |
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| 271 | long int * globalDst = new long int [nDstLocal]; |
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| 272 | |
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| 273 | long int globalIndex; |
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| 274 | int i_ind, j_ind; |
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| 275 | for (int idx = 0; idx < nSrcLocal; ++idx) |
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| 276 | { |
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| 277 | i_ind=domainSrc_->i_index(idx) ; |
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| 278 | j_ind=domainSrc_->j_index(idx) ; |
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| 279 | |
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| 280 | globalIndex = i_ind + j_ind * domainSrc_->ni_glo; |
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| 281 | globalSrc[idx] = globalIndex; |
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| 282 | } |
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| 283 | |
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| 284 | for (int idx = 0; idx < nDstLocal; ++idx) |
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| 285 | { |
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| 286 | i_ind=domainDest_->i_index(idx) ; |
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| 287 | j_ind=domainDest_->j_index(idx) ; |
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| 288 | |
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| 289 | globalIndex = i_ind + j_ind * domainDest_->ni_glo; |
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| 290 | globalDst[idx] = globalIndex; |
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| 291 | } |
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| 292 | |
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| 293 | |
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| 294 | // Calculate weight index |
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[688] | 295 | Mapper mapper(client->intraComm); |
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| 296 | mapper.setVerbosity(PROGRESS) ; |
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| 297 | |
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[880] | 298 | |
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[846] | 299 | // supress masked data for the source |
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| 300 | int nSrcLocalUnmasked = 0 ; |
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[893] | 301 | for (int idx=0 ; idx < nSrcLocal; idx++) if (domainSrc_->localMask(idx)) ++nSrcLocalUnmasked ; |
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[846] | 302 | |
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[880] | 303 | |
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[846] | 304 | CArray<double,2> boundsLonSrcUnmasked(nVertexSrc,nSrcLocalUnmasked); |
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| 305 | CArray<double,2> boundsLatSrcUnmasked(nVertexSrc,nSrcLocalUnmasked); |
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| 306 | long int * globalSrcUnmasked = new long int [nSrcLocalUnmasked]; |
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| 307 | |
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| 308 | nSrcLocalUnmasked=0 ; |
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| 309 | for (int idx=0 ; idx < nSrcLocal; idx++) |
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| 310 | { |
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[893] | 311 | if (domainSrc_->localMask(idx)) |
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[846] | 312 | { |
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| 313 | for(int n=0;n<nVertexSrc;++n) |
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| 314 | { |
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| 315 | boundsLonSrcUnmasked(n,nSrcLocalUnmasked) = boundsLonSrc(n,idx) ; |
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| 316 | boundsLatSrcUnmasked(n,nSrcLocalUnmasked) = boundsLatSrc(n,idx) ; |
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| 317 | } |
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| 318 | globalSrcUnmasked[nSrcLocalUnmasked]=globalSrc[idx] ; |
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| 319 | ++nSrcLocalUnmasked ; |
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| 320 | } |
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| 321 | } |
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| 322 | |
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[893] | 323 | |
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[846] | 324 | int nDstLocalUnmasked = 0 ; |
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[893] | 325 | for (int idx=0 ; idx < nDstLocal; idx++) if (domainDest_->localMask(idx)) ++nDstLocalUnmasked ; |
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[846] | 326 | |
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| 327 | CArray<double,2> boundsLonDestUnmasked(nVertexDest,nDstLocalUnmasked); |
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| 328 | CArray<double,2> boundsLatDestUnmasked(nVertexDest,nDstLocalUnmasked); |
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| 329 | long int * globalDstUnmasked = new long int [nDstLocalUnmasked]; |
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| 330 | |
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| 331 | nDstLocalUnmasked=0 ; |
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| 332 | for (int idx=0 ; idx < nDstLocal; idx++) |
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| 333 | { |
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[893] | 334 | if (domainDest_->localMask(idx)) |
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[846] | 335 | { |
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| 336 | for(int n=0;n<nVertexDest;++n) |
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| 337 | { |
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| 338 | boundsLonDestUnmasked(n,nDstLocalUnmasked) = boundsLonDest(n,idx) ; |
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| 339 | boundsLatDestUnmasked(n,nDstLocalUnmasked) = boundsLatDest(n,idx) ; |
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| 340 | } |
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| 341 | globalDstUnmasked[nDstLocalUnmasked]=globalDst[idx] ; |
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| 342 | ++nDstLocalUnmasked ; |
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| 343 | } |
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| 344 | } |
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[856] | 345 | |
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[846] | 346 | mapper.setSourceMesh(boundsLonSrcUnmasked.dataFirst(), boundsLatSrcUnmasked.dataFirst(), nVertexSrc, nSrcLocalUnmasked, &srcPole[0], globalSrcUnmasked); |
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| 347 | mapper.setTargetMesh(boundsLonDestUnmasked.dataFirst(), boundsLatDestUnmasked.dataFirst(), nVertexDest, nDstLocalUnmasked, &dstPole[0], globalDstUnmasked); |
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| 348 | |
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[1158] | 349 | std::vector<double> timings = mapper.computeWeights(orderInterp,renormalize,quantity); |
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[846] | 350 | |
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[709] | 351 | std::map<int,std::vector<std::pair<int,double> > > interpMapValue; |
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[743] | 352 | std::map<int,std::vector<std::pair<int,double> > >::const_iterator iteNorthPole = interpMapValueNorthPole.end(), |
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| 353 | iteSouthPole = interpMapValueSouthPole.end(); |
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[688] | 354 | for (int idx = 0; idx < mapper.nWeights; ++idx) |
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| 355 | { |
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[709] | 356 | interpMapValue[mapper.targetWeightId[idx]].push_back(make_pair(mapper.sourceWeightId[idx],mapper.remapMatrix[idx])); |
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[743] | 357 | if (iteNorthPole != interpMapValueNorthPole.find(mapper.targetWeightId[idx])) |
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| 358 | { |
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| 359 | interpMapValueNorthPole[mapper.targetWeightId[idx]].push_back(make_pair(mapper.sourceWeightId[idx],mapper.remapMatrix[idx])); |
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| 360 | } |
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| 361 | |
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| 362 | if (iteSouthPole != interpMapValueSouthPole.find(mapper.targetWeightId[idx])) |
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| 363 | { |
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| 364 | interpMapValueSouthPole[mapper.targetWeightId[idx]].push_back(make_pair(mapper.sourceWeightId[idx],mapper.remapMatrix[idx])); |
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| 365 | } |
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[688] | 366 | } |
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[743] | 367 | int niGloDst = domainDest_->ni_glo.getValue(); |
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| 368 | processPole(interpMapValueNorthPole, niGloDst); |
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| 369 | processPole(interpMapValueSouthPole, niGloDst); |
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| 370 | |
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| 371 | if (!interpMapValueNorthPole.empty()) |
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| 372 | { |
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| 373 | std::map<int,std::vector<std::pair<int,double> > >::iterator itNorthPole = interpMapValueNorthPole.begin(); |
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| 374 | for (; itNorthPole != iteNorthPole; ++itNorthPole) |
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| 375 | { |
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| 376 | if (!(itNorthPole->second.empty())) |
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| 377 | itNorthPole->second.swap(interpMapValue[itNorthPole->first]); |
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| 378 | } |
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| 379 | } |
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| 380 | |
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| 381 | if (!interpMapValueSouthPole.empty()) |
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| 382 | { |
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| 383 | std::map<int,std::vector<std::pair<int,double> > >::iterator itSouthPole = interpMapValueSouthPole.begin(); |
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| 384 | for (; itSouthPole != iteSouthPole; ++itSouthPole) |
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| 385 | { |
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| 386 | if (!(itSouthPole->second.empty())) |
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| 387 | itSouthPole->second.swap(interpMapValue[itSouthPole->first]); |
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| 388 | } |
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| 389 | } |
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| 390 | |
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[1173] | 391 | if (writeToFile_ && !readFromFile_) writeRemapInfo(interpMapValue); |
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| 392 | // exchangeRemapInfo(interpMapValue); |
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| 393 | convertRemapInfo(interpMapValue) ; |
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[709] | 394 | |
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| 395 | delete [] globalSrc; |
---|
[846] | 396 | delete [] globalSrcUnmasked; |
---|
[709] | 397 | delete [] globalDst; |
---|
[846] | 398 | delete [] globalDstUnmasked; |
---|
| 399 | |
---|
[688] | 400 | } |
---|
| 401 | |
---|
[743] | 402 | void CDomainAlgorithmInterpolate::processPole(std::map<int,std::vector<std::pair<int,double> > >& interMapValuePole, |
---|
| 403 | int nbGlobalPointOnPole) |
---|
| 404 | { |
---|
| 405 | CContext* context = CContext::getCurrent(); |
---|
| 406 | CContextClient* client=context->client; |
---|
| 407 | |
---|
| 408 | MPI_Comm poleComme(MPI_COMM_NULL); |
---|
| 409 | MPI_Comm_split(client->intraComm, interMapValuePole.empty() ? MPI_UNDEFINED : 1, 0, &poleComme); |
---|
| 410 | if (MPI_COMM_NULL != poleComme) |
---|
| 411 | { |
---|
| 412 | int nbClientPole; |
---|
| 413 | MPI_Comm_size(poleComme, &nbClientPole); |
---|
| 414 | |
---|
| 415 | std::map<int,std::vector<std::pair<int,double> > >::iterator itePole = interMapValuePole.end(), itPole, |
---|
| 416 | itbPole = interMapValuePole.begin(); |
---|
| 417 | |
---|
| 418 | int nbWeight = 0; |
---|
| 419 | for (itPole = itbPole; itPole != itePole; ++itPole) |
---|
| 420 | nbWeight += itPole->second.size(); |
---|
| 421 | |
---|
| 422 | std::vector<int> recvCount(nbClientPole,0); |
---|
| 423 | std::vector<int> displ(nbClientPole,0); |
---|
| 424 | MPI_Allgather(&nbWeight,1,MPI_INT,&recvCount[0],1,MPI_INT,poleComme) ; |
---|
| 425 | |
---|
| 426 | displ[0]=0; |
---|
| 427 | for(int n=1;n<nbClientPole;++n) displ[n]=displ[n-1]+recvCount[n-1] ; |
---|
| 428 | int recvSize=displ[nbClientPole-1]+recvCount[nbClientPole-1] ; |
---|
| 429 | |
---|
| 430 | std::vector<int> sendSourceIndexBuff(nbWeight); |
---|
| 431 | std::vector<double> sendSourceWeightBuff(nbWeight); |
---|
| 432 | int k = 0; |
---|
| 433 | for (itPole = itbPole; itPole != itePole; ++itPole) |
---|
| 434 | { |
---|
| 435 | for (int idx = 0; idx < itPole->second.size(); ++idx) |
---|
| 436 | { |
---|
| 437 | sendSourceIndexBuff[k] = (itPole->second)[idx].first; |
---|
| 438 | sendSourceWeightBuff[k] = (itPole->second)[idx].second; |
---|
| 439 | ++k; |
---|
| 440 | } |
---|
| 441 | } |
---|
| 442 | |
---|
| 443 | std::vector<int> recvSourceIndexBuff(recvSize); |
---|
| 444 | std::vector<double> recvSourceWeightBuff(recvSize); |
---|
| 445 | |
---|
| 446 | // Gather all index and weight for pole |
---|
| 447 | MPI_Allgatherv(&sendSourceIndexBuff[0],nbWeight,MPI_INT,&recvSourceIndexBuff[0],&recvCount[0],&displ[0],MPI_INT,poleComme); |
---|
| 448 | MPI_Allgatherv(&sendSourceWeightBuff[0],nbWeight,MPI_DOUBLE,&recvSourceWeightBuff[0],&recvCount[0],&displ[0],MPI_DOUBLE,poleComme); |
---|
| 449 | |
---|
| 450 | std::map<int,double> recvTemp; |
---|
| 451 | for (int idx = 0; idx < recvSize; ++idx) |
---|
| 452 | { |
---|
| 453 | if (recvTemp.end() != recvTemp.find(recvSourceIndexBuff[idx])) |
---|
| 454 | recvTemp[recvSourceIndexBuff[idx]] += recvSourceWeightBuff[idx]/nbGlobalPointOnPole; |
---|
| 455 | else |
---|
[1317] | 456 | recvTemp[recvSourceIndexBuff[idx]] = recvSourceWeightBuff[idx]/nbGlobalPointOnPole; |
---|
[743] | 457 | } |
---|
| 458 | |
---|
| 459 | std::map<int,double>::const_iterator itRecvTemp, itbRecvTemp = recvTemp.begin(), iteRecvTemp = recvTemp.end(); |
---|
| 460 | |
---|
| 461 | for (itPole = itbPole; itPole != itePole; ++itPole) |
---|
| 462 | { |
---|
| 463 | itPole->second.clear(); |
---|
| 464 | for (itRecvTemp = itbRecvTemp; itRecvTemp != iteRecvTemp; ++itRecvTemp) |
---|
| 465 | itPole->second.push_back(make_pair(itRecvTemp->first, itRecvTemp->second)); |
---|
| 466 | } |
---|
| 467 | } |
---|
| 468 | |
---|
| 469 | } |
---|
| 470 | |
---|
[689] | 471 | /*! |
---|
| 472 | Compute the index mapping between domain on grid source and one on grid destination |
---|
| 473 | */ |
---|
[827] | 474 | void CDomainAlgorithmInterpolate::computeIndexSourceMapping_(const std::vector<CArray<double,1>* >& dataAuxInputs) |
---|
[688] | 475 | { |
---|
[1267] | 476 | if (readFromFile_) |
---|
[689] | 477 | readRemapInfo(); |
---|
| 478 | else |
---|
[1021] | 479 | { |
---|
| 480 | computeRemap(); |
---|
| 481 | } |
---|
[688] | 482 | } |
---|
| 483 | |
---|
[1021] | 484 | void CDomainAlgorithmInterpolate::writeRemapInfo(std::map<int,std::vector<std::pair<int,double> > >& interpMapValue) |
---|
| 485 | { |
---|
| 486 | writeInterpolationInfo(fileToReadWrite_, interpMapValue); |
---|
| 487 | } |
---|
| 488 | |
---|
[689] | 489 | void CDomainAlgorithmInterpolate::readRemapInfo() |
---|
[1021] | 490 | { |
---|
[657] | 491 | std::map<int,std::vector<std::pair<int,double> > > interpMapValue; |
---|
[1021] | 492 | readInterpolationInfo(fileToReadWrite_, interpMapValue); |
---|
[657] | 493 | |
---|
[709] | 494 | exchangeRemapInfo(interpMapValue); |
---|
| 495 | } |
---|
| 496 | |
---|
[1173] | 497 | void CDomainAlgorithmInterpolate::convertRemapInfo(std::map<int,std::vector<std::pair<int,double> > >& interpMapValue) |
---|
| 498 | { |
---|
| 499 | CContext* context = CContext::getCurrent(); |
---|
| 500 | CContextClient* client=context->client; |
---|
| 501 | int clientRank = client->clientRank; |
---|
[709] | 502 | |
---|
[1173] | 503 | this->transformationMapping_.resize(1); |
---|
| 504 | this->transformationWeight_.resize(1); |
---|
| 505 | |
---|
| 506 | TransformationIndexMap& transMap = this->transformationMapping_[0]; |
---|
| 507 | TransformationWeightMap& transWeight = this->transformationWeight_[0]; |
---|
| 508 | |
---|
| 509 | std::map<int,std::vector<std::pair<int,double> > >::const_iterator itb = interpMapValue.begin(), it, |
---|
| 510 | ite = interpMapValue.end(); |
---|
| 511 | |
---|
| 512 | for (it = itb; it != ite; ++it) |
---|
| 513 | { |
---|
| 514 | const std::vector<std::pair<int,double> >& tmp = it->second; |
---|
| 515 | for (int i = 0; i < tmp.size(); ++i) |
---|
| 516 | { |
---|
| 517 | transMap[it->first].push_back(tmp[i].first); |
---|
| 518 | transWeight[it->first].push_back(tmp[i].second); |
---|
| 519 | } |
---|
| 520 | } |
---|
| 521 | } |
---|
| 522 | |
---|
[709] | 523 | /*! |
---|
| 524 | Read remap information from file then distribute it among clients |
---|
| 525 | */ |
---|
[856] | 526 | void CDomainAlgorithmInterpolate::exchangeRemapInfo(std::map<int,std::vector<std::pair<int,double> > >& interpMapValue) |
---|
[709] | 527 | { |
---|
| 528 | CContext* context = CContext::getCurrent(); |
---|
| 529 | CContextClient* client=context->client; |
---|
| 530 | int clientRank = client->clientRank; |
---|
| 531 | |
---|
[827] | 532 | this->transformationMapping_.resize(1); |
---|
| 533 | this->transformationWeight_.resize(1); |
---|
| 534 | |
---|
[833] | 535 | TransformationIndexMap& transMap = this->transformationMapping_[0]; |
---|
| 536 | TransformationWeightMap& transWeight = this->transformationWeight_[0]; |
---|
[827] | 537 | |
---|
[657] | 538 | boost::unordered_map<size_t,int> globalIndexOfDomainDest; |
---|
| 539 | int ni = domainDest_->ni.getValue(); |
---|
| 540 | int nj = domainDest_->nj.getValue(); |
---|
| 541 | int ni_glo = domainDest_->ni_glo.getValue(); |
---|
| 542 | size_t globalIndex; |
---|
| 543 | int nIndexSize = domainDest_->i_index.numElements(), i_ind, j_ind; |
---|
| 544 | for (int idx = 0; idx < nIndexSize; ++idx) |
---|
| 545 | { |
---|
| 546 | i_ind=domainDest_->i_index(idx) ; |
---|
| 547 | j_ind=domainDest_->j_index(idx) ; |
---|
| 548 | |
---|
| 549 | globalIndex = i_ind + j_ind * ni_glo; |
---|
| 550 | globalIndexOfDomainDest[globalIndex] = clientRank; |
---|
| 551 | } |
---|
| 552 | |
---|
| 553 | CClientServerMappingDistributed domainIndexClientClientMapping(globalIndexOfDomainDest, |
---|
| 554 | client->intraComm, |
---|
| 555 | true); |
---|
| 556 | CArray<size_t,1> globalIndexInterp(interpMapValue.size()); |
---|
| 557 | std::map<int,std::vector<std::pair<int,double> > >::const_iterator itb = interpMapValue.begin(), it, |
---|
| 558 | ite = interpMapValue.end(); |
---|
| 559 | size_t globalIndexCount = 0; |
---|
| 560 | for (it = itb; it != ite; ++it) |
---|
| 561 | { |
---|
| 562 | globalIndexInterp(globalIndexCount) = it->first; |
---|
| 563 | ++globalIndexCount; |
---|
| 564 | } |
---|
| 565 | |
---|
[1336] | 566 | domainIndexClientClientMapping.computeServerIndexMapping(globalIndexInterp, client->serverSize); |
---|
[829] | 567 | const CClientServerMapping::GlobalIndexMap& globalIndexInterpSendToClient = domainIndexClientClientMapping.getGlobalIndexOnServer(); |
---|
[657] | 568 | |
---|
| 569 | //Inform each client number of index they will receive |
---|
| 570 | int nbClient = client->clientSize; |
---|
| 571 | int* sendBuff = new int[nbClient]; |
---|
| 572 | int* recvBuff = new int[nbClient]; |
---|
[709] | 573 | for (int i = 0; i < nbClient; ++i) |
---|
| 574 | { |
---|
| 575 | sendBuff[i] = 0; |
---|
| 576 | recvBuff[i] = 0; |
---|
| 577 | } |
---|
[657] | 578 | int sendBuffSize = 0; |
---|
[829] | 579 | CClientServerMapping::GlobalIndexMap::const_iterator itbMap = globalIndexInterpSendToClient.begin(), itMap, |
---|
| 580 | iteMap = globalIndexInterpSendToClient.end(); |
---|
[657] | 581 | for (itMap = itbMap; itMap != iteMap; ++itMap) |
---|
| 582 | { |
---|
[709] | 583 | const std::vector<size_t>& tmp = itMap->second; |
---|
[657] | 584 | int sizeIndex = 0, mapSize = (itMap->second).size(); |
---|
| 585 | for (int idx = 0; idx < mapSize; ++idx) |
---|
| 586 | { |
---|
[856] | 587 | // sizeIndex += interpMapValue.at((itMap->second)[idx]).size(); |
---|
| 588 | sizeIndex += (interpMapValue[(int)(itMap->second)[idx]]).size(); |
---|
[657] | 589 | } |
---|
| 590 | sendBuff[itMap->first] = sizeIndex; |
---|
| 591 | sendBuffSize += sizeIndex; |
---|
| 592 | } |
---|
| 593 | |
---|
[709] | 594 | |
---|
[657] | 595 | MPI_Allreduce(sendBuff, recvBuff, nbClient, MPI_INT, MPI_SUM, client->intraComm); |
---|
| 596 | |
---|
| 597 | int* sendIndexDestBuff = new int [sendBuffSize]; |
---|
| 598 | int* sendIndexSrcBuff = new int [sendBuffSize]; |
---|
| 599 | double* sendWeightBuff = new double [sendBuffSize]; |
---|
| 600 | |
---|
| 601 | std::vector<MPI_Request> sendRequest; |
---|
[709] | 602 | |
---|
| 603 | int sendOffSet = 0, l = 0; |
---|
[657] | 604 | for (itMap = itbMap; itMap != iteMap; ++itMap) |
---|
| 605 | { |
---|
[709] | 606 | const std::vector<size_t>& indexToSend = itMap->second; |
---|
| 607 | int mapSize = indexToSend.size(); |
---|
[657] | 608 | int k = 0; |
---|
| 609 | for (int idx = 0; idx < mapSize; ++idx) |
---|
| 610 | { |
---|
[856] | 611 | std::vector<std::pair<int,double> >& interpMap = interpMapValue[(int)indexToSend[idx]]; //interpMapValue.at(indexToSend[idx]); |
---|
[657] | 612 | for (int i = 0; i < interpMap.size(); ++i) |
---|
| 613 | { |
---|
[709] | 614 | sendIndexDestBuff[l] = indexToSend[idx]; |
---|
| 615 | sendIndexSrcBuff[l] = interpMap[i].first; |
---|
| 616 | sendWeightBuff[l] = interpMap[i].second; |
---|
[657] | 617 | ++k; |
---|
[709] | 618 | ++l; |
---|
[657] | 619 | } |
---|
| 620 | } |
---|
| 621 | |
---|
| 622 | sendRequest.push_back(MPI_Request()); |
---|
| 623 | MPI_Isend(sendIndexDestBuff + sendOffSet, |
---|
| 624 | k, |
---|
| 625 | MPI_INT, |
---|
| 626 | itMap->first, |
---|
[821] | 627 | MPI_DOMAIN_INTERPOLATION_DEST_INDEX, |
---|
[657] | 628 | client->intraComm, |
---|
| 629 | &sendRequest.back()); |
---|
| 630 | sendRequest.push_back(MPI_Request()); |
---|
| 631 | MPI_Isend(sendIndexSrcBuff + sendOffSet, |
---|
| 632 | k, |
---|
| 633 | MPI_INT, |
---|
| 634 | itMap->first, |
---|
[821] | 635 | MPI_DOMAIN_INTERPOLATION_SRC_INDEX, |
---|
[657] | 636 | client->intraComm, |
---|
| 637 | &sendRequest.back()); |
---|
| 638 | sendRequest.push_back(MPI_Request()); |
---|
| 639 | MPI_Isend(sendWeightBuff + sendOffSet, |
---|
| 640 | k, |
---|
| 641 | MPI_DOUBLE, |
---|
| 642 | itMap->first, |
---|
[821] | 643 | MPI_DOMAIN_INTERPOLATION_WEIGHT, |
---|
[657] | 644 | client->intraComm, |
---|
| 645 | &sendRequest.back()); |
---|
| 646 | sendOffSet += k; |
---|
| 647 | } |
---|
| 648 | |
---|
| 649 | int recvBuffSize = recvBuff[clientRank]; |
---|
| 650 | int* recvIndexDestBuff = new int [recvBuffSize]; |
---|
| 651 | int* recvIndexSrcBuff = new int [recvBuffSize]; |
---|
| 652 | double* recvWeightBuff = new double [recvBuffSize]; |
---|
| 653 | int receivedSize = 0; |
---|
| 654 | int clientSrcRank; |
---|
| 655 | while (receivedSize < recvBuffSize) |
---|
| 656 | { |
---|
| 657 | MPI_Status recvStatus; |
---|
| 658 | MPI_Recv((recvIndexDestBuff + receivedSize), |
---|
| 659 | recvBuffSize, |
---|
| 660 | MPI_INT, |
---|
| 661 | MPI_ANY_SOURCE, |
---|
[821] | 662 | MPI_DOMAIN_INTERPOLATION_DEST_INDEX, |
---|
[657] | 663 | client->intraComm, |
---|
| 664 | &recvStatus); |
---|
| 665 | |
---|
| 666 | int countBuff = 0; |
---|
| 667 | MPI_Get_count(&recvStatus, MPI_INT, &countBuff); |
---|
| 668 | clientSrcRank = recvStatus.MPI_SOURCE; |
---|
| 669 | |
---|
| 670 | MPI_Recv((recvIndexSrcBuff + receivedSize), |
---|
| 671 | recvBuffSize, |
---|
| 672 | MPI_INT, |
---|
| 673 | clientSrcRank, |
---|
[821] | 674 | MPI_DOMAIN_INTERPOLATION_SRC_INDEX, |
---|
[657] | 675 | client->intraComm, |
---|
| 676 | &recvStatus); |
---|
| 677 | |
---|
| 678 | MPI_Recv((recvWeightBuff + receivedSize), |
---|
| 679 | recvBuffSize, |
---|
| 680 | MPI_DOUBLE, |
---|
| 681 | clientSrcRank, |
---|
[821] | 682 | MPI_DOMAIN_INTERPOLATION_WEIGHT, |
---|
[657] | 683 | client->intraComm, |
---|
| 684 | &recvStatus); |
---|
| 685 | |
---|
| 686 | for (int idx = 0; idx < countBuff; ++idx) |
---|
| 687 | { |
---|
[827] | 688 | transMap[*(recvIndexDestBuff + receivedSize + idx)].push_back(*(recvIndexSrcBuff + receivedSize + idx)); |
---|
| 689 | transWeight[*(recvIndexDestBuff + receivedSize + idx)].push_back(*(recvWeightBuff + receivedSize + idx)); |
---|
[657] | 690 | } |
---|
| 691 | receivedSize += countBuff; |
---|
| 692 | } |
---|
| 693 | |
---|
| 694 | std::vector<MPI_Status> requestStatus(sendRequest.size()); |
---|
[709] | 695 | MPI_Waitall(sendRequest.size(), &sendRequest[0], MPI_STATUS_IGNORE); |
---|
[657] | 696 | |
---|
| 697 | delete [] sendIndexDestBuff; |
---|
| 698 | delete [] sendIndexSrcBuff; |
---|
| 699 | delete [] sendWeightBuff; |
---|
| 700 | delete [] recvIndexDestBuff; |
---|
| 701 | delete [] recvIndexSrcBuff; |
---|
| 702 | delete [] recvWeightBuff; |
---|
| 703 | delete [] sendBuff; |
---|
| 704 | delete [] recvBuff; |
---|
| 705 | } |
---|
[1021] | 706 | |
---|
| 707 | /*! Redefined some functions of CONetCDF4 to make use of them */ |
---|
| 708 | CDomainAlgorithmInterpolate::WriteNetCdf::WriteNetCdf(const StdString& filename, const MPI_Comm comm) |
---|
[1158] | 709 | : CNc4DataOutput(NULL, filename, false, false, true, comm, false, true) {} |
---|
[1021] | 710 | int CDomainAlgorithmInterpolate::WriteNetCdf::addDimensionWrite(const StdString& name, |
---|
| 711 | const StdSize size) |
---|
| 712 | { |
---|
[1158] | 713 | return CONetCDF4::addDimension(name, size); |
---|
[1021] | 714 | } |
---|
[657] | 715 | |
---|
[1021] | 716 | int CDomainAlgorithmInterpolate::WriteNetCdf::addVariableWrite(const StdString& name, nc_type type, |
---|
| 717 | const std::vector<StdString>& dim) |
---|
| 718 | { |
---|
[1158] | 719 | return CONetCDF4::addVariable(name, type, dim); |
---|
[1021] | 720 | } |
---|
| 721 | |
---|
[1158] | 722 | void CDomainAlgorithmInterpolate::WriteNetCdf::endDefinition() |
---|
| 723 | { |
---|
| 724 | CONetCDF4::definition_end(); |
---|
| 725 | } |
---|
| 726 | |
---|
[1021] | 727 | void CDomainAlgorithmInterpolate::WriteNetCdf::writeDataIndex(const CArray<int,1>& data, const StdString& name, |
---|
| 728 | bool collective, StdSize record, |
---|
| 729 | const std::vector<StdSize>* start, |
---|
| 730 | const std::vector<StdSize>* count) |
---|
| 731 | { |
---|
| 732 | CONetCDF4::writeData<int,1>(data, name, collective, record, start, count); |
---|
| 733 | } |
---|
| 734 | |
---|
| 735 | void CDomainAlgorithmInterpolate::WriteNetCdf::writeDataIndex(const CArray<double,1>& data, const StdString& name, |
---|
| 736 | bool collective, StdSize record, |
---|
| 737 | const std::vector<StdSize>* start, |
---|
| 738 | const std::vector<StdSize>* count) |
---|
| 739 | { |
---|
| 740 | CONetCDF4::writeData<double,1>(data, name, collective, record, start, count); |
---|
| 741 | } |
---|
| 742 | |
---|
| 743 | /* |
---|
| 744 | Write interpolation weights into a file |
---|
| 745 | \param [in] filename name of output file |
---|
| 746 | \param interpMapValue mapping of global index of domain destination and domain source as well as the corresponding weight |
---|
| 747 | */ |
---|
| 748 | void CDomainAlgorithmInterpolate::writeInterpolationInfo(std::string& filename, |
---|
| 749 | std::map<int,std::vector<std::pair<int,double> > >& interpMapValue) |
---|
| 750 | { |
---|
| 751 | CContext* context = CContext::getCurrent(); |
---|
| 752 | CContextClient* client=context->client; |
---|
| 753 | |
---|
| 754 | size_t n_src = domainSrc_->ni_glo * domainSrc_->nj_glo; |
---|
| 755 | size_t n_dst = domainDest_->ni_glo * domainDest_->nj_glo; |
---|
| 756 | |
---|
| 757 | long localNbWeight = 0; |
---|
| 758 | long globalNbWeight; |
---|
| 759 | long startIndex; |
---|
| 760 | typedef std::map<int,std::vector<std::pair<int,double> > > IndexRemap; |
---|
| 761 | IndexRemap::iterator itb = interpMapValue.begin(), it, |
---|
| 762 | ite = interpMapValue.end(); |
---|
| 763 | for (it = itb; it!=ite; ++it) |
---|
| 764 | { |
---|
| 765 | localNbWeight += (it->second).size(); |
---|
| 766 | } |
---|
| 767 | |
---|
| 768 | CArray<int,1> src_idx(localNbWeight); |
---|
| 769 | CArray<int,1> dst_idx(localNbWeight); |
---|
| 770 | CArray<double,1> weights(localNbWeight); |
---|
| 771 | |
---|
| 772 | int index = 0; |
---|
[1269] | 773 | int indexOffset=0 ; |
---|
| 774 | if (fortranConvention) indexOffset=1 ; |
---|
[1021] | 775 | for (it = itb; it !=ite; ++it) |
---|
| 776 | { |
---|
| 777 | std::vector<std::pair<int,double> >& tmp = it->second; |
---|
| 778 | for (int idx = 0; idx < tmp.size(); ++idx) |
---|
| 779 | { |
---|
[1269] | 780 | dst_idx(index) = it->first + indexOffset; |
---|
| 781 | src_idx(index) = tmp[idx].first + indexOffset; |
---|
[1021] | 782 | weights(index) = tmp[idx].second; |
---|
| 783 | ++index; |
---|
| 784 | } |
---|
| 785 | } |
---|
| 786 | |
---|
| 787 | MPI_Allreduce(&localNbWeight, &globalNbWeight, 1, MPI_LONG, MPI_SUM, client->intraComm); |
---|
| 788 | MPI_Scan(&localNbWeight, &startIndex, 1, MPI_LONG, MPI_SUM, client->intraComm); |
---|
| 789 | |
---|
[1158] | 790 | if (0 == globalNbWeight) |
---|
| 791 | { |
---|
| 792 | info << "There is no interpolation weights calculated between " |
---|
| 793 | << "domain source: " << domainSrc_->getDomainOutputName() |
---|
| 794 | << " and domain destination: " << domainDest_->getDomainOutputName() |
---|
| 795 | << std::endl; |
---|
| 796 | return; |
---|
| 797 | } |
---|
| 798 | |
---|
[1021] | 799 | std::vector<StdSize> start(1, startIndex - localNbWeight); |
---|
| 800 | std::vector<StdSize> count(1, localNbWeight); |
---|
[1158] | 801 | |
---|
| 802 | WriteNetCdf netCdfWriter(filename, client->intraComm); |
---|
[1021] | 803 | |
---|
| 804 | // Define some dimensions |
---|
| 805 | netCdfWriter.addDimensionWrite("n_src", n_src); |
---|
| 806 | netCdfWriter.addDimensionWrite("n_dst", n_dst); |
---|
| 807 | netCdfWriter.addDimensionWrite("n_weight", globalNbWeight); |
---|
| 808 | |
---|
| 809 | std::vector<StdString> dims(1,"n_weight"); |
---|
| 810 | |
---|
| 811 | // Add some variables |
---|
| 812 | netCdfWriter.addVariableWrite("src_idx", NC_INT, dims); |
---|
| 813 | netCdfWriter.addVariableWrite("dst_idx", NC_INT, dims); |
---|
| 814 | netCdfWriter.addVariableWrite("weight", NC_DOUBLE, dims); |
---|
| 815 | |
---|
[1158] | 816 | // End of definition |
---|
| 817 | netCdfWriter.endDefinition(); |
---|
| 818 | |
---|
[1021] | 819 | // // Write variables |
---|
[1158] | 820 | if (0 != localNbWeight) |
---|
| 821 | { |
---|
| 822 | netCdfWriter.writeDataIndex(src_idx, "src_idx", false, 0, &start, &count); |
---|
| 823 | netCdfWriter.writeDataIndex(dst_idx, "dst_idx", false, 0, &start, &count); |
---|
| 824 | netCdfWriter.writeDataIndex(weights, "weight", false, 0, &start, &count); |
---|
| 825 | } |
---|
[1021] | 826 | |
---|
| 827 | netCdfWriter.closeFile(); |
---|
| 828 | } |
---|
| 829 | |
---|
[657] | 830 | /*! |
---|
| 831 | Read interpolation information from a file |
---|
| 832 | \param [in] filename interpolation file |
---|
| 833 | \param [in/out] interpMapValue Mapping between (global) index of domain on grid destination and |
---|
| 834 | corresponding global index of domain and associated weight value on grid source |
---|
| 835 | */ |
---|
[689] | 836 | void CDomainAlgorithmInterpolate::readInterpolationInfo(std::string& filename, |
---|
[709] | 837 | std::map<int,std::vector<std::pair<int,double> > >& interpMapValue) |
---|
[657] | 838 | { |
---|
[660] | 839 | int ncid ; |
---|
| 840 | int weightDimId ; |
---|
| 841 | size_t nbWeightGlo ; |
---|
[657] | 842 | |
---|
[1268] | 843 | |
---|
[660] | 844 | CContext* context = CContext::getCurrent(); |
---|
| 845 | CContextClient* client=context->client; |
---|
| 846 | int clientRank = client->clientRank; |
---|
| 847 | int clientSize = client->clientSize; |
---|
[663] | 848 | |
---|
[1268] | 849 | |
---|
| 850 | { |
---|
| 851 | ifstream f(filename.c_str()); |
---|
| 852 | if (!f.good()) ERROR("void CDomainAlgorithmInterpolate::readInterpolationInfo", |
---|
| 853 | << "Attempt to read file weight :" << filename << " which doesn't seem to exist." << std::endl |
---|
| 854 | << "Please check this file "); |
---|
| 855 | } |
---|
| 856 | |
---|
[660] | 857 | nc_open(filename.c_str(),NC_NOWRITE, &ncid) ; |
---|
| 858 | nc_inq_dimid(ncid,"n_weight",&weightDimId) ; |
---|
| 859 | nc_inq_dimlen(ncid,weightDimId,&nbWeightGlo) ; |
---|
| 860 | |
---|
| 861 | size_t nbWeight ; |
---|
| 862 | size_t start ; |
---|
| 863 | size_t div = nbWeightGlo/clientSize ; |
---|
| 864 | size_t mod = nbWeightGlo%clientSize ; |
---|
| 865 | if (clientRank < mod) |
---|
| 866 | { |
---|
| 867 | nbWeight=div+1 ; |
---|
| 868 | start=clientRank*(div+1) ; |
---|
| 869 | } |
---|
| 870 | else |
---|
| 871 | { |
---|
| 872 | nbWeight=div ; |
---|
| 873 | start= mod * (div+1) + (clientRank-mod) * div ; |
---|
| 874 | } |
---|
| 875 | |
---|
| 876 | double* weight=new double[nbWeight] ; |
---|
| 877 | int weightId ; |
---|
| 878 | nc_inq_varid (ncid, "weight", &weightId) ; |
---|
| 879 | nc_get_vara_double(ncid, weightId, &start, &nbWeight, weight) ; |
---|
| 880 | |
---|
[663] | 881 | long* srcIndex=new long[nbWeight] ; |
---|
[660] | 882 | int srcIndexId ; |
---|
| 883 | nc_inq_varid (ncid, "src_idx", &srcIndexId) ; |
---|
| 884 | nc_get_vara_long(ncid, srcIndexId, &start, &nbWeight, srcIndex) ; |
---|
| 885 | |
---|
[663] | 886 | long* dstIndex=new long[nbWeight] ; |
---|
[660] | 887 | int dstIndexId ; |
---|
| 888 | nc_inq_varid (ncid, "dst_idx", &dstIndexId) ; |
---|
| 889 | nc_get_vara_long(ncid, dstIndexId, &start, &nbWeight, dstIndex) ; |
---|
[663] | 890 | |
---|
[1269] | 891 | int indexOffset=0 ; |
---|
| 892 | if (fortranConvention) indexOffset=1 ; |
---|
| 893 | for(size_t ind=0; ind<nbWeight;++ind) |
---|
| 894 | interpMapValue[dstIndex[ind]-indexOffset].push_back(make_pair(srcIndex[ind]-indexOffset,weight[ind])); |
---|
| 895 | } |
---|
[657] | 896 | |
---|
[1264] | 897 | void CDomainAlgorithmInterpolate::apply(const std::vector<std::pair<int,double> >& localIndex, |
---|
| 898 | const double* dataInput, |
---|
| 899 | CArray<double,1>& dataOut, |
---|
| 900 | std::vector<bool>& flagInitial, |
---|
| 901 | bool ignoreMissingValue, bool firstPass ) |
---|
| 902 | { |
---|
| 903 | int nbLocalIndex = localIndex.size(); |
---|
| 904 | double defaultValue = std::numeric_limits<double>::quiet_NaN(); |
---|
| 905 | |
---|
| 906 | if (detectMissingValue) |
---|
| 907 | { |
---|
| 908 | if (firstPass && renormalize) |
---|
| 909 | { |
---|
| 910 | renormalizationFactor.resize(dataOut.numElements()) ; |
---|
| 911 | renormalizationFactor=1 ; |
---|
| 912 | } |
---|
| 913 | |
---|
[1480] | 914 | if (firstPass) |
---|
| 915 | { |
---|
| 916 | allMissing.resize(dataOut.numElements()) ; |
---|
| 917 | allMissing=true ; |
---|
| 918 | } |
---|
| 919 | |
---|
[1264] | 920 | for (int idx = 0; idx < nbLocalIndex; ++idx) |
---|
| 921 | { |
---|
[1474] | 922 | if (NumTraits<double>::isNan(*(dataInput + idx))) |
---|
[1264] | 923 | { |
---|
[1480] | 924 | allMissing(localIndex[idx].first) = allMissing(localIndex[idx].first) && true; |
---|
[1264] | 925 | if (renormalize) renormalizationFactor(localIndex[idx].first)-=localIndex[idx].second ; |
---|
| 926 | } |
---|
| 927 | else |
---|
| 928 | { |
---|
| 929 | dataOut(localIndex[idx].first) += *(dataInput + idx) * localIndex[idx].second; |
---|
[1480] | 930 | allMissing(localIndex[idx].first) = allMissing(localIndex[idx].first) && false; // Reset flag to indicate not all data source are nan |
---|
[1264] | 931 | } |
---|
| 932 | } |
---|
| 933 | |
---|
| 934 | } |
---|
| 935 | else |
---|
| 936 | { |
---|
| 937 | for (int idx = 0; idx < nbLocalIndex; ++idx) |
---|
| 938 | { |
---|
| 939 | dataOut(localIndex[idx].first) += *(dataInput + idx) * localIndex[idx].second; |
---|
| 940 | } |
---|
| 941 | } |
---|
[657] | 942 | } |
---|
[1264] | 943 | |
---|
| 944 | void CDomainAlgorithmInterpolate::updateData(CArray<double,1>& dataOut) |
---|
| 945 | { |
---|
[1480] | 946 | if (detectMissingValue) |
---|
[1273] | 947 | { |
---|
[1480] | 948 | double defaultValue = std::numeric_limits<double>::quiet_NaN(); |
---|
| 949 | size_t nbIndex=dataOut.numElements() ; |
---|
| 950 | |
---|
| 951 | for (int idx = 0; idx < nbIndex; ++idx) |
---|
| 952 | { |
---|
| 953 | if (allMissing(idx)) dataOut(idx) = defaultValue; // If all data source are nan then data destination must be nan |
---|
| 954 | } |
---|
| 955 | |
---|
| 956 | if (renormalize) |
---|
| 957 | { |
---|
| 958 | if (renormalizationFactor.numElements()>0) dataOut/=renormalizationFactor ; // In some case, process doesn't received any data for interpolation (mask) |
---|
| 959 | // so renormalizationFactor is not initialized |
---|
| 960 | } |
---|
[1273] | 961 | } |
---|
[1264] | 962 | } |
---|
| 963 | |
---|
| 964 | } |
---|