[352] | 1 | #ifndef __ONETCDF4_IMPL_HPP__ |
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| 2 | #define __ONETCDF4_IMPL_HPP__ |
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| 3 | |
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| 4 | #include "onetcdf4.hpp" |
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[498] | 5 | #include "netCdfInterface.hpp" |
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[1158] | 6 | #include "timer.hpp" |
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[352] | 7 | |
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| 8 | namespace xios |
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| 9 | { |
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[369] | 10 | template <class T, int ndim> |
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| 11 | void CONetCDF4::writeData(const CArray<T, ndim>& data, const StdString & name, |
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[352] | 12 | bool collective, StdSize record, |
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| 13 | const std::vector<StdSize> * start, |
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| 14 | const std::vector<StdSize> * count) |
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| 15 | { |
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| 16 | int grpid = this->getCurrentGroup(); |
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| 17 | int varid = this->getVariable(name); |
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| 18 | StdSize array_size = 1; |
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| 19 | std::vector<StdSize> sstart, scount; |
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| 20 | |
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| 21 | if (this->wmpi && collective) |
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[498] | 22 | CNetCdfInterface::varParAccess(grpid, varid, NC_COLLECTIVE); |
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[352] | 23 | if (this->wmpi && !collective) |
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[498] | 24 | CNetCdfInterface::varParAccess(grpid, varid, NC_INDEPENDENT); |
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[352] | 25 | |
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[1158] | 26 | CTimer::get("Files : get data infos").resume(); |
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[352] | 27 | this->getWriteDataInfos |
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| 28 | (name, record, array_size, sstart, scount, start, count); |
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[1158] | 29 | CTimer::get("Files : get data infos").suspend(); |
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| 30 | |
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[369] | 31 | if (data.numElements() != array_size) |
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[352] | 32 | { |
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| 33 | ERROR("CONetCDF4::writeData(...)", |
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[369] | 34 | << "[ input array size = " << data.numElements() |
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[352] | 35 | << ", intern array size = " << array_size |
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| 36 | << " ] Invalid input data !" ); |
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| 37 | } |
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[498] | 38 | |
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[369] | 39 | this->writeData_(grpid, varid, sstart, scount, data.dataFirst()); |
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[352] | 40 | } |
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[498] | 41 | |
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[1158] | 42 | template <> |
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| 43 | void CONetCDF4::writeData(const CArray<StdString, 1>& data, const StdString & name, |
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| 44 | bool collective, StdSize record, |
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| 45 | const std::vector<StdSize> * start, |
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| 46 | const std::vector<StdSize> * count) |
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| 47 | { |
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| 48 | int grpid = this->getCurrentGroup(); |
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| 49 | int varid = this->getVariable(name); |
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| 50 | StdSize array_size = 1; |
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| 51 | std::vector<StdSize> sstart, scount; |
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| 52 | |
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| 53 | if (this->wmpi && collective) |
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| 54 | CNetCdfInterface::varParAccess(grpid, varid, NC_COLLECTIVE); |
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| 55 | if (this->wmpi && !collective) |
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| 56 | CNetCdfInterface::varParAccess(grpid, varid, NC_INDEPENDENT); |
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| 57 | |
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| 58 | CTimer::get("CONetCDF4::writeData getWriteDataInfos").resume(); |
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| 59 | this->getWriteDataInfos(name, record, array_size, sstart, scount, start, count); |
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| 60 | CTimer::get("CONetCDF4::writeData getWriteDataInfos").suspend(); |
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| 61 | |
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[1441] | 62 | int dimArrayLen; |
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| 63 | for (int i=0; i<scount.size(); i++) |
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| 64 | if (scount[i] == stringArrayLen) |
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| 65 | dimArrayLen = i; |
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| 66 | |
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[1158] | 67 | if (data.numElements()*stringArrayLen != array_size) |
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| 68 | { |
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| 69 | ERROR("CONetCDF4::writeData(...)", |
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[1435] | 70 | << "[ input array size = " << data.numElements()*stringArrayLen |
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[1158] | 71 | << ", intern array size = " << array_size |
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| 72 | << " ] Invalid input data !" ); |
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| 73 | } |
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| 74 | char *PtrArrayStr ; |
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[1873] | 75 | PtrArrayStr=new char[stringArrayLen*data.numElements()] ; |
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| 76 | memset (PtrArrayStr,' ',stringArrayLen*data.numElements()); |
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| 77 | size_t offset=0 ; |
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| 78 | |
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| 79 | // pb with iterator with blitz++ string array with recent compiler |
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| 80 | /* |
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[1158] | 81 | Array<StdString,1>::const_iterator it, itb=data.begin(), ite=data.end() ; |
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[1873] | 82 | for(it=itb;it!=ite;++it, offset+=stringArrayLen) |
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[1158] | 83 | { |
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[1873] | 84 | it->copy(PtrArrayStr+offset,it->size()) ; |
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| 85 | PtrArrayStr[offset+it->size()]='\0' ; |
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[1158] | 86 | } |
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[1873] | 87 | */ |
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| 88 | for(int i=0;i<data.numElements();i++,offset+=stringArrayLen) |
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| 89 | { |
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| 90 | data(i).copy(PtrArrayStr+offset,data(i).size()) ; |
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| 91 | PtrArrayStr[offset+data(i).size()]='\0' ; |
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| 92 | } |
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| 93 | CTimer::get("CONetCDF4::writeData writeData_").resume(); |
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| 94 | this->writeData_(grpid, varid, sstart, scount, PtrArrayStr); |
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| 95 | CTimer::get("CONetCDF4::writeData writeData_").suspend(); |
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| 96 | |
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[1441] | 97 | delete [] PtrArrayStr; |
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[1158] | 98 | } |
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| 99 | |
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[352] | 100 | //---------------------------------------------------------------- |
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[498] | 101 | |
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[352] | 102 | template <class T> |
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| 103 | void CONetCDF4::setDefaultValue(const StdString & varname, const T * value) |
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| 104 | { |
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| 105 | int grpid = this->getCurrentGroup(); |
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| 106 | int varid = this->getVariable(varname); |
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[498] | 107 | |
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[352] | 108 | if (value != NULL) |
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| 109 | { |
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[517] | 110 | // nc_def_var_fill will automatically set the _FillValue attribute when |
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| 111 | // using the NetCDF 4 format but we need to do it manually otherwise |
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| 112 | if (useClassicFormat) |
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| 113 | this->addAttribute(StdString("_FillValue"), *value, &varname); |
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| 114 | else |
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| 115 | CNetCdfInterface::defVarFill(grpid, varid, 0, (void*)value); |
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[352] | 116 | this->addAttribute(StdString("missing_value"), *value, &varname); |
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| 117 | } |
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[517] | 118 | else if (!useClassicFormat) |
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| 119 | { |
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| 120 | // The "no-fill mode" is set globally for the classic NetCDF format |
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| 121 | CNetCdfInterface::defVarFill(grpid, varid, 1, NULL); |
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| 122 | } |
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[352] | 123 | } |
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[498] | 124 | |
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[352] | 125 | ///--------------------------------------------------------------- |
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| 126 | |
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| 127 | } |
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| 128 | |
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| 129 | |
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| 130 | |
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| 131 | #endif |
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