Changes between Version 60 and Version 61 of Doc/CheckDebug

Timestamp:

12/13/21 16:13:22 (3 years ago)

Author:

falletti

Comment:

--

Doc/CheckDebug

@@ -238 +238 @@
 You can run post processing jobs once the main job is finished (for example if the post processing job was deactivated in [#Lespost-traitementsdansconfig.card config.card] or if you encountered a [#Debug bug]).
 
-You can : 
-  1. work directly in the experiment directory (which looks like `PATH_MODIPSL/config/IPSLCM5A/ST11/`). Possible option but not recommended. 
-  1. work in a dedicated directory located in the experiment directory (e.g. `PATH_MODIPSL/config/IPSLCM5A/ST11/POST_REDO`). Best choice. 
-  
-For this last option you have to :
-     * copy (or link `ln -s`) the files and directories `config.card` `POST`, `COMP` and run.card 
+You can: 
+  1. Work in a dedicated directory located in the experiment directory (e.g. `PATH_MODIPSL/config/IPSLCM5A/ST11/POST_REDO`). '''Best choice.''' 
+  1. Work directly in the experiment directory (which looks like `PATH_MODIPSL/config/IPSLCM5A/ST11/`). Possible option but not recommended. 
+
+For the first option (recommended) you have to copy (or link `ln -s`) the files and directories `config.card` `POST`, `COMP` and run.card 
   {{{
 #!sh
@@ -255 +254 @@
 }}}
   
- 
+ For more information about the post-processing, see [wiki:Doc/Running#Simulation-Postprocessing Running simulation and post-processing]
+
 ## Restart REBUILD ##
-[[NoteBox(tip,Most of the configuration has no more a Rebuild step\, due to the use of parallel I/O (done with XIOS). In most of the case\, you can go to the next step. The rebuild step is sill use in some ORCHIDEE configurations, 600px)]]
+[[NoteBox(tip,'''Most of configurations no longer has a Rebuild step'''\, due to the use of parallel I/O (done with XIOS). In most of the case\, you can go to the next step. The rebuild step is sill use in some ORCHIDEE configurations, 600px)]]
 
  * Copy the `libIGCM/rebuild_fromWorkdir.job` file to the experiment directory or to the dedicated directory;
@@ -296 +296 @@
 ## Restart Pack_output ##
 
- The pack_output (e.g. in case it was not submitted by the rebuild job):
+[[NoteBox(tip, In case you haven't done it yet\, copy `config.card` `COMP` `POST` and `run.card` (post process only part of the simulation) in the `POST_REDO/` directory., 600px)]]
+
+ Note: you need to do this part in case the pack_output was not submitted by the rebuild job (if used), or if you encountered a bug. 
 
   * Copy the `libIGCM/pack_output.job` file to the experiment directory or to the dedicated directory;
@@ -324 +326 @@
 ## Restart Pack_restart or Pack_debug ##
 
-   * Copy the libIGCM/pack_debug.job and libIGCM/pack_restart.job files to the experiment directory or to the dedicated directory;
+[[NoteBox(tip, In case you haven't done it yet\, copy `config.card` `COMP` `POST` and `run.card` (post process only part of the simulation) in the `POST_REDO/` directory., 600px)]]
+
+   * Copy the `libIGCM/pack_debug.job` and `libIGCM/pack_restart.job` files to the experiment directory or to the dedicated directory;
    * Edit them : 
 {{{
@@ -350 +354 @@
 ## Restart the Time series with TimeSeries_checker.job ##
 
-[[NoteBox(tip, In case you haven't done it yet\, copy `config.card` `COMP` `POST` and eventually `run.card` (post process only part of the simulation) in the `POST_REDO/` directory., 600px)]]
+[[NoteBox(tip, In case you haven't done it yet\, copy `config.card` `COMP` `POST` and `run.card` (post process only part of the simulation) in the `POST_REDO/` directory., 600px)]]
 
    * Copy the `libIGCM/TimeSeries_Checker.job` file to the experiment directory or to the dedicated directory besides COMP and config.card as minimum
-   * You do not need to modify the TimeSeries_Checker.job anymore. By default it takes the variables from config.card. 
+   * You do not need to modify the `TimeSeries_Checker.job`. By default it takes the variables from config.card. 
    * Check the value of !TimeSeriesCompleted in run.card. For a complete check set :
 {{{
@@ -376 +380 @@
 }}}
 
-## Restarting the seasonal mean calculations ##
-
-[[NoteBox(tip, Transfer `config.card`\, `COMP`\, `POST`\, and `run.card` (post process part of the simulation only) in the `POST_REDO` directory if you have not done so yet., 600px)]]
+## Restart the seasonal mean calculations ##
+
+[[NoteBox(tip, In case you haven't done it yet\, copy `config.card` `COMP` `POST` and `run.card` (post process only part of the simulation) in the `POST_REDO/` directory., 600px)]]
 
 There are two methods: 
@@ -419 +423 @@
 }}}
 
-## Restarting the atlas figures creation ##
+## Restart the monitoring with monitoring.job ##
 
 [[NoteBox(tip, Transfer `config.card`\, `COMP`\, `POST`\, and `run.card` (post process part of the simulation only) in the `POST_REDO/` directory if you have not done so yet., 600px)]]
 
-### create_se.job (recommended method) ###
+ * Copy the `libIGCM/monitoring.job` file to the experiment directory or to the dedicated directory;
+ * You do not need to modify the `monitoring.job`. By default it takes the variables from config.card.
+ * Submit the job:
+{{{
+#!sh
+ccc_msub monitoring.job                        # TGCC
+
+sbatch monitoring.job                          # IDRIS
+}}}
+
+## Restart the atlas figures creation with `create_se.job` ##
+
+[[NoteBox(tip, Transfer `config.card`\, `COMP`\, `POST`\, and `run.card` (post process part of the simulation only) in the `POST_REDO/` directory if you have not done so yet., 600px)]]
+
 
  * Copy the `libIGCM/create_se.job` file to the experiment directory or to the dedicated directory;
@@ -433 +450 @@
 PeriodDateEnd=19691231
 }}}
- * Submit `create_se.job` in batch mode
+ * Submit the job:
+{{{
+#!sh
+ccc_msub create_se.job                        # TGCC
+
+sbatch create_se.job                          # IDRIS
+}}}
 
 # Optimization with Lucia #