Changes between Initial Version and Version 1 of Documentation/UserGuide/ShellScriptFind

Timestamp:

2015-02-05T11:03:06+01:00 (9 years ago)

Author:

ychen

Comment:

--

Documentation/UserGuide/ShellScriptFind

@@ +1 @@
+Sometimes, you may need some works for combining the ORCHIDEE results from the specific output frequency to a single file for the post analysis.
+Here, I made a simple bash script for your reference and you can combine the several files to a single file by running the following bash script.
+The commands, ncract, find, sort and export, will be used. See the following script for the detail.      
+{{{
+#!/bin/bash
+
+# search file names and rebuild
+# set up working years
+year=(1981 1982 1983 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000)
+
+# set the experiment name
+exp="BCLb"
+
+# set the file path for searching files 
+in_dir_path="/ccc/store/cont003/dsm/p529luy/IGCM_OUT/LMDZOR/PROD/amip/"$exp"/ATM/Output/DA"
+
+#echo $in_dir_path
+# move the path to search the files
+cd $in_dir_path
+
+# start the loop for searching the files...
+for index in {0..19}
+do
+    echo "Search files on year: ${year[$index]}"
+    # use the "find" and "sort" command to find the files 
+    # and sort by the numeric number appears in the filenames 
+    inputfilename=( $(find -name "${exp}_${year[$index]}*" | sort -n) )
+    echo "PROCESSING input files: "${inputfilename[@]}
+
+    # make a outout file name based on the working "exp" and "year" 
+    export outputfilename="${exp}_${year[$index]}.nc"
+
+    # use "ncrcat" command to re-create(combine) the nc file based on the searched inputfilename    
+    ncrcat ${inputfilename[@]} /ccc/store/cont003/dsm/cheny/Daily/${exp}/$outputfilename
+
+    echo "PLEASE CHECK output file: "$outputfilename
+done 
+
+echo "FINISHED THE COMBINE files job.. (AH-JA...)"$outputfilename
+}}}
+
+The above script combines output files (daily temp step monthly output) from 1981-2000.
+
+You can change the path or year for your necessary.