Changes between Version 11 and Version 12 of Documentation/UserGuide/ReBuild


Ignore:
Timestamp:
2020-04-01T16:51:42+02:00 (4 years ago)
Author:
jgipsl
Comment:

Remove path to TGCC not allowed on the wiki

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  • Documentation/UserGuide/ReBuild

    v11 v12  
    66When running a long simulation it sometimes happens that a single year is missing from in your store directory. On curie that would be, for example,  
    77{{{ 
    8 /ccc/store/cont003/dsm/p529luy/IGCM_OUT/OL2/PROD/secsto/JOB_NAME/SBG/Output/MO 
     8...store/.../IGCM_OUT/OL2/PROD/secsto/JOB_NAME/SBG/Output/MO 
    99}}} 
    1010 
    … …  
    1313 
    1414{{{ 
    15 /ccc/scratch/cont003/dsm/p529luy/IGCM_OUT/OL2/PROD/secsto/JOB_NAME/SBG/Output/MO 
     15...scratch.../IGCM_OUT/OL2/PROD/secsto/JOB_NAME/SBG/Output/MO 
    1616}}} 
    1717 
    … …  
    2222If your run did not crash (check run.card) but there is still a history file missing LibIGCM may have encountered a problem with rebuild job. To check whether this is the case you should look into 
    2323{{{ 
    24 /ccc/scratch/cont003/dsm/p529luy/IGCM_OUT/OL2/PROD/SECSTO/ACF/REBUILD/REBUILD_XXXX 
     24...scratch.../IGCM_OUT/OL2/PROD/SECSTO/ACF/REBUILD/REBUILD_XXXX 
    2525}}} 
    2626Where XXXX is the year, month or day for which you are missing an output file. In that folder you should find the same number of stomate and sechiba files as the number of processors you are running with. Thus if you run with 32 procs the rebuild folder should contain 64 files (32 for sechiba and 32 for stomate). 
    … …  
    2828Copy the file rebuild_fromWorkdir.job from the libIGCM folder to your config folder 
    2929{{{ 
    30 cp /ccc/work/cont003/dsm/p529luy/DOFOCO.SPINUP/libIGCM/rebuild_fromWorkdir.job /ccc/work/cont003/dsm/cheny/DOFOCO.SPINUP/config/ORCHIDEE_OL/ACF/rebuild_fromWorkdir.job 
     30cp ...work.../DOFOCO.SPINUP/libIGCM/rebuild_fromWorkdir.job /ccc/work/cont003/dsm/cheny/DOFOCO.SPINUP/config/ORCHIDEE_OL/ACF/rebuild_fromWorkdir.job 
    3131}}} 
    3232 
    … …  
    4040# WARNING If this variable is true, you must use libIGCM_POST path instead 
    4141# WARNING of your running libIGCM directory. 
    42 libIGCM=${libIGCM:=/ccc/work/cont003/dsm/cheny/DOFOCO.SPINUP/libIGCM} 
     42libIGCM=${libIGCM:=.../DOFOCO.SPINUP/libIGCM} 
    4343 
    4444#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer. 
    … …  
    5454#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP 
    5555#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/ 
    56 #D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW 
    57 REBUILD_DIR=${REBUILD_DIR:=/ccc/scratch/cont003/dsm/p529luy/IGCM_OUT/OL2/PROD/SECSTO/ACF/REBUILD} 
     56#D- example : ....scratch.../REBUILD/IPSLCM5/SCAL-NEW 
     57REBUILD_DIR=${REBUILD_DIR:=...scratch.../IGCM_OUT/OL2/PROD/SECSTO/ACF/REBUILD} 
    5858 
    5959#D- How many directory to rebuild we have to consider 
    … …  
    7979On curie you should go to your work directory and try the following command line (adjust the user name and file names) 
    8080{{{   
    81 p529luy@curie1566:/ccc/work/cont003/dsm/p529luy> /ccc/cont003/home/dsm/p86ipsl/rebuild/src_X64_CURIE/modipsl_v2_2_2_netcdf4.2/bin/rebuild -o /ccc/store/cont003/dsm/p529luy/IGCM_OUT/OL2/PROD/SECSTO/ALFf/SRF/Output/YE/ALFf_19820101_198201231_1Y_sechiba_history.nc /ccc/scratch/cont003/dsm/p529luy/IGCM_OUT/OL2/PROD/SECSTO/ALFf/REBUILD/REBUILD_19820101/sechiba_history_00* 
     81> .../rebuild/src_X64_CURIE/modipsl_v2_2_2_netcdf4.2/bin/rebuild -o ...store.../IGCM_OUT/OL2/PROD/SECSTO/ALFf/SRF/Output/YE/ALFf_19820101_198201231_1Y_sechiba_history.nc ...scratch.../IGCM_OUT/OL2/PROD/SECSTO/ALFf/REBUILD/REBUILD_19820101/sechiba_history_00* 
    8282}}} 
    8383