Changes between Version 21 and Version 22 of Documentation/UserGuide/InstallingORCHIDEEBasic


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Timestamp:
2020-02-26T15:56:01+01:00 (4 years ago)
Author:
jgipsl
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  • Documentation/UserGuide/InstallingORCHIDEEBasic

    v21 v22  
    11= How to install and compile ORCHIDEE with modipsl and libIGCM for offline use = 
     2Author: J. Ghattas[[BR]] 
     3Last revision: 2020/02/26, J. Ghattas  
     4 
    25[[PageOutline]] 
     6 
    37* If you want to know more about compiling ORCHIDEE, see [wiki:Documentation/UserGuide/CompileMethods]. 
    48* After the compilation is done as described on this page, you can run the model using 
    … …  
    812 
    913== ORCHIDEE trunk version == 
    10 To extract and compile the latest trunk version of ORCHIDEE and configuration files for offline simulations (note that for obelix you may need to load the openmpi library first with the command 'module load openmpi') : 
     14To extract and compile the latest trunk version of ORCHIDEE and configuration files for offline simulations: 
    1115{{{ 
    1216svn co http://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl 
    … …  
    1418./model ORCHIDEE_trunk 
    1519cd ../config/ORCHIDEE_OL 
    16 gmake 
     20./compile_orchidee_ol.sh 
    1721}}} 
     22 
     23If you want to compile with debug options, use following: 
     24{{{ 
     25./compile_orchidee_ol.sh -debug 
     26}}} 
     27 
     28 
     29The model compile be default at the machines that we maintain at IPSL: irene/TGCC, jeanzay/IDRIS, obelix/LSCE and ciclad/climserv/IPSL. The compilation script loads all modules needed for compilation. 
    1830 
    1931If you install on a local PC or a cluster not maintained by IPSL-CMC, then you need to add compile options for your system. See here how to proceed: https://forge.ipsl.jussieu.fr/igcmg_doc/wiki/DocBenv#HowtousetheIPSLmodelsandtoolswithalocalPC 
    2032 
    21 === Specific revision on the trunk === 
    22 It is possible to define a specific revision on the trunk before extraction. The file util/mod.def describes the contents for all predefined configurations. For example the content in configuration ORCHIDEE_trunk are ORCHIDEE, XIOS, IOIPSL, libIGCM and configuration directory ORCHIDEE_OL. All these components have a specific revision number set in mod.def or HEAD which means the latest revision on the version. [[BR]] 
     33'''ORCHIDEE trunk version older than revision 6572'''[[BR]] 
    2334 
    24 Change in mod.def before extracting the model by ./model ORCHIDEE_trunk to have the revision XXX on trunk ORCHIDEE: 
     35For older version of the trunk, the compilation script does not exist. For these versions there is a Makefile instead. The compilation is done in the same folder as above using following (note that your environment is important and modules need to be loaded before compilation, see [https://forge.ipsl.jussieu.fr/igcmg_doc/wiki/Doc/ComputingCenters igcmg_doc]: 
    2536{{{ 
    26 #-C- ORCHIDEE_trunk  trunk/ORCHIDEE                           HEAD    14 ORCHIDEE           modeles 
    27 #-C- ORCHIDEE_trunk  trunk/ORCHIDEE_OL                        HEAD    14 ORCHIDEE_OL        config 
     37modipsl/config/ORCHIDEE_OL 
     38gmake 
    2839}}} 
    29 into 
    30 {{{ 
    31 #-C- ORCHIDEE_trunk  trunk/ORCHIDEE                           XXX     14 ORCHIDEE           modeles 
    32 #-C- ORCHIDEE_trunk  trunk/ORCHIDEE_OL                        HEAD    14 ORCHIDEE_OL        config 
    33 }}} 
    34 Note that for most cases you do not need to change ORCHIDEE_OL revision. This directory contains the configurations files to run with libIGCM. Sometimes there are incoherences between older revisions of ORCHIDEE and the latest version of the configuration but in most cases it is recommended to take the latest version of the configuration. 
    35  
    36  
    37 It is also possible to change the revision of ORCHIDEE after the configuration has been extracted. In that case, go to modeles/ORCHIDEE directory and update using svn: 
    38  
    39 {{{ 
    40 cd modipsl/modeles/ORCHIDEE 
    41 svn info                                       # To know which version you extracted 
    42 svn stat                                       # To know if you have any local modifications 
    43 svn update -r XXX 
    44 }}} 
    45  
     40If you want to compile with debug options, you need to change this inside the Makefile.  
    4641 
    4742== ORCHIDEE tagged versions == 
    48 The tagged versions of ORCHIDEE have a corresponging offline configuration which can be extracted using "./model target" and compiled in the same way as described for the trunk above. The target has the same name as the name of the tag. Currently there are 3 tagged versions available in modipsl by default: ORCHIDEE_2_1 (most recent tag), ORCHIDEE_2_0 (tag used for CMIP6) and ORCHIDEE_AR5 (tag used for CMIP5). 
     43The tagged versions of ORCHIDEE have a corresponding offline configuration which can be extracted using "./model target" and compiled in the same way as described for the trunk above. The target has the same name as the name of the tag. Currently there are 3 tagged versions available in modipsl by default: ORCHIDEE_2_1 (most recent tag), ORCHIDEE_2_0 (tag used for CMIP6) and ORCHIDEE_2_2 (actually a branch which some added developments). The version ORCHIDEE_AR5 also exists but is only available to extract source code without running and compiling possibility.  
     44 
    4945To extract and compile do as follow: 
    5046{{{ 
    5147svn co http://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl 
    5248cd modipsl/util 
    53 ./model ORCHIDEE_2_0                         # or another tag 
     49./model ORCHIDEE_2_0                         # or ORCHIDEE_2_1 / ORCHIDEE_2_2 
    5450cd ../config/ORCHIDEE_OL 
    5551gmake 
    … …  
    5854 
    5955== Branch or other version on svn == 
    60 Do as for the trunk but modify the file mod.def to extract a specific version of ORCHIDEE before launching the command '''./model ORCHIDEE_trunk'''. The file mod.def specifies all components to be extracted with the script model for each configuration predefined. [[BR]] 
     56Do as for the trunk but modify the file mod.def to extract a specific version of ORCHIDEE before launching the command '''./model ORCHIDEE_trunk'''. The file mod.def specifies all components to be extracted with the script model for each predefined configuration. [[BR]] 
    6157 
    6258Do first: 
    … …  
    6763 
    6864Edit now the file mod.def for the line corresponding to extraction of ORCHIDEE sources for target ORCHIDEE_trunk.[[BR]] 
    69 Following line needs to be changed : 
     65Following lines needs to be changed : 
    7066 
    7167{{{ 
    7268#-C- ORCHIDEE_trunk  trunk/ORCHIDEE                           HEAD   14 ORCHIDEE         modeles 
     69#-C- ORCHIDEE_trunk  trunk/ORCHIDEE_OL                        HEAD   14 ORCHIDEE_OL      config 
    7370}}} 
    7471 
    75 Replace ''trunk/ORCHIDEE'' by the path to your branch or personal directory. HEAD can also be changed to a specific revision number. For example for the branch ORCHIDEE-MICT, following should be set: 
     72If you want a specific revision on the trunk, then change HEAD in above lines to the revision you want. Note that you can often keep the HEAD revision of the ORCHIDEE_OL folder together with a specific revision of the sources ORCHIDEE.  
    7673 
     74If you want to change to a branch or a personal version, then replace ''trunk/ORCHIDEE'' by the path to your branch or personal directory. HEAD can also be changed to a specific revision number. For example for the branch ORCHIDEE-CN-CAN, following should be set: 
    7775{{{ 
    78 #-C- ORCHIDEE_trunk  branches/ORCHIDEE-MICT/ORCHIDEE               HEAD   14 ORCHIDEE         modeles 
     76#-C- ORCHIDEE_trunk  branches/ORCHIDEE-CN-CAN/ORCHIDEE               HEAD   14 ORCHIDEE         modeles 
     77#-C- ORCHIDEE_trunk  branches/ORCHIDEE-CN-CAN/ORCHIDEE_OL            HEAD   14 ORCHIDEE_OL      config 
    7978}}} 
    8079 
    81 You can also change the config/ORCHIDEE_OL folder if your branch has a specific one. For this, change also trunk/ORCHIDEE_OL on the following line in mod.def:  
    82 {{{ 
    83 #-C- ORCHIDEE_trunk  trunk/ORCHIDEE_OL                        HEAD    14 ORCHIDEE_OL        config 
    84 }}} 
    85  
    86  
     80If you version do not have a ORCHIDEE_OL folder, then keep the trunk version.  
    8781 
    8882Now continue with the extraction of the model: 
    … …  
    9084./model ORCHIDEE_trunk 
    9185cd ../config/ORCHIDEE_OL 
    92 gmake 
    9386}}} 
    9487 
     88Compile using gmake (if the Makefile exist in your version) or ./compile_orchidee_ol.sh depending on the version. 
    9589 
    96 == Optional method for a branch or other version on svn == 
    97 You can also install the trunk and afterwards remove ORCHIDEE and change it to another version from svn or a local version. In this case you will keep the configuration files from the trunk version :  
    98 {{{ 
    99 svn co http://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl 
    100 cd modipsl/util 
    101 ./model ORCHIDEE_trunk 
    102 cd ../modeles 
    103 rm -fr ORCHIDEE 
    104 svn co svn://forge.ipsl.jussieu.fr/orchidee/branches/xxxxxxx/ORCHIDEE ORCHIDEE     # or a copy from a local version of ORCHIDEE 
    105 cd ../util ; ./ins_make      # Create makefiles 
    106 cd ../modeles/ORCHIDEE 
    107 gmake driver 
    108 }}} 
    10990 
    11091== NB! For old branches with fortran code in ORCHIDEE_OL directory ==