Changes between Version 1 and Version 2 of DevelopmentActivities/Xios

Timestamp:

2013-07-29T15:30:43+02:00 (11 years ago)

Author:

jgipsl

Comment:

--

DevelopmentActivities/Xios

@@ -4 +4 @@
 Note ! All tests for now have only been done with ORCHIDEE offline mode. The implementation in ORCHIDEE will need to change when adapting to run with LMDZ. 
 
-= How to install ORCHIDEE with XIOS for offline use =
+= How to install ORCHIDEE with XIOS for offline use : at CURIE =
 
- * Extract :
+ * Extract
 {{{
 > svn co http://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl
@@ -26 +26 @@
 
 
- * Adapt compiling with netcdf parallel :
+ * Adapt compiling with netcdf parallel
 {{{
 cd ../util
@@ -44 +44 @@
 }}}
 
- * Compile using fcm. fcm must be added in your $PATH (verify with ''which fcm''): 
+ * Compile using fcm. fcm must be added in your $PATH (verify with ''which fcm'')
 {{{
 > cd ../config/ORCHIDEE_OL
-> gmake with_xios    # (fcm needed in your PATH)
+> gmake with_xios
 }}}
 
 
- * Lance :
-The executable can now be used with XIOS or with IOIPSL or with both at the same time. 
-To use this executable, netcdf paralllel is needed even for use of IOIPSL.
+ * Lance
+  * The executable can now be used with XIOS or with IOIPSL or with both at the same time.
+   * Activate XIOS by adding XIOS_DIAG=y
+   * Deactivate IOIPSL by setting WRITE_STEP=0 and STOMATE_HIST_DT=0 in run.def
+  * This executable must be used with netcdf and hdf5 parallel, add in the job just before exexcution following lines :
+{{{
+module unload netcdf hdf5
+module load netcdf/4.2_hdf5_parallel
+module load hdf5/1.8.9_parallel
+}}} 
+  * The executable can be launched in 
+    * attached mode : this means that the server XIOS is not used. You only launches the orchidee_ol executable.
+    * using the server xios : in this case, one or several cores are dedicated to the server and the reste to orchiee_ol. 
 
 
 
+ * Visulize netcdf output
+  * ferret : compatible to all netcdf versions, IOIPSL and XIOS output
+  * nco : all versions adapted for IOIPSL output. To vizualize XIOS output, you need to have loaded netcdf and hdf5 parallel. 
+  * cdo : all versions adapted for IOIPSL output. To vizualize XIOS output, you need to have loaded netcdf and hdf5 parallel and also a newer version of cdo.
+  * Load following modules to use interactivly these tools :
+{{{
+module unload netcdf hdf5 cdo
+module load netcdf/4.2_hdf5_parallel
+module load hdf5/1.8.9_parallel
+module load cdo/1.6.0
+}}}
 
- * Visulize output : 
-Ferret is compatible but for nco tools you need to change netcdf module. Do following in the terminal to be used :