1 | <!-- =========================================================================================================== --> |
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2 | <!-- ORCHIDEE context --> |
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3 | <!-- context_orchidee.xml : Configuration file for ORCHIDEE for production of output files using XIOS --> |
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4 | <!-- --> |
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5 | <!-- $HeadURL$ --> |
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6 | <!-- $Date$ --> |
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7 | <!-- $Revision$ --> |
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8 | <!-- =========================================================================================================== --> |
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9 | <context id="orchidee"> |
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10 | |
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11 | |
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12 | <!-- =========================================================================================================== --> |
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13 | <!-- Definition of all existing variables --> |
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14 | <!-- DO NOT CHANGE THIS FILE --> |
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15 | <!-- =========================================================================================================== --> |
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16 | <field_definition src="./field_def_orchidee.xml"/> |
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17 | |
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18 | |
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19 | <!-- =========================================================================================================== --> |
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20 | <!-- Definition of input files --> |
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21 | <!-- DO NOT CHANGE THIS FILE --> |
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22 | <!-- =========================================================================================================== --> |
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23 | <file_definition src="./file_def_input_orchidee.xml"/> |
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24 | |
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25 | <file_definition> |
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26 | |
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27 | <file id="soils_param_file" mode="read" output_freq="1d" enabled="true"> |
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28 | <field id="soilcolor" name="soilcolor" domain_ref="soil" operation="instant" freq_offset="1ts"/> |
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29 | <field id="soiltext" name="soiltext" domain_ref="soil" operation="instant" freq_offset="1ts"/> |
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30 | </file> |
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31 | |
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32 | <file id="PFTmap_file" mode="read" output_freq="1d"> |
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33 | <field id="maxvegetfrac_read" name="maxvegetfrac" domain_ref="pft" axis_ref="nvm" operation="instant" freq_offset="1ts"> this < 1e10 ? this : 0 </field> |
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34 | <field id="maxvegetfrac_mask" name="maxvegetfrac" domain_ref="pft" axis_ref="nvm" operation="instant" freq_offset="1ts"> this < 1e10 ? 1 : 0 </field> |
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35 | </file> |
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36 | |
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37 | <file id="topography_file" mode="read" output_freq="1d"> |
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38 | <!-- <field id="pente" domain_ref="topo" operation="instant" freq_offset="1ts" > (this > 1e10) ? 1 : this </field> ==> In reference, missing value are use for computing, this probably wrong --> |
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39 | <field id="pente_read" name="pente" domain_ref="topo" operation="instant" freq_offset="1ts" > ((this/$slope_noreinf) < 1)? this/$slope_noreinf : 1 </field> |
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40 | <field id="mask_pente_read" name="pente" domain_ref="topo" operation="instant" freq_offset="1ts" > (this < $min_sechiba)? 0 : 1 </field> <!-- create mask --> |
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41 | </file> |
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42 | |
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43 | <file id="albedo_file" mode="read" output_freq="1d"> |
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44 | <field id="mask_alb_read" name="mask" domain_ref="albedo" operation="instant" freq_offset="1ts" /> |
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45 | <field id="bg_alb_vis_read" name="bg_alb_vis" domain_ref="albedo" operation="instant" freq_offset="1ts" > mask_alb_read > 0.99 ? this : $missing_value </field> |
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46 | <field id="bg_alb_nir_read" name="bg_alb_nir" domain_ref="albedo" operation="instant" freq_offset="1ts" > mask_alb_read > 0.99 ? this : $missing_value </field> |
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47 | </file> |
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48 | |
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49 | <file id="lai_file" mode="read" output_freq="1d" time_counter_name="toto" cyclic="true"> |
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50 | <field id="lai_read" name="LAI" grid_ref="lai" operation="instant" freq_offset="1ts" > this > 20 ? 0 : this </field> |
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51 | <field id="mask_lai_read" name="LAI" grid_ref="lai" operation="instant" freq_offset="1ts" > this > 20 ? 0 : 1 </field> <!-- create mask --> |
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52 | </file> |
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53 | |
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54 | <file id="fertilizer_file" mode="read" output_freq="1ts" cyclic="true"> |
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55 | <field id="N_qt_OTHER_year_read" name="N_qt_OTHER_year" domain_ref="fertilizer" operation="instant" freq_offset="1ts"/> |
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56 | <field id="N_qt_WRICE_year_read" name="N_qt_WRICE_year" domain_ref="fertilizer" operation="instant" freq_offset="1ts"/> |
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57 | </file> |
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58 | |
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59 | <file id="bbg_clim_file" mode="read" output_freq="1ts" cyclic="true"> |
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60 | <field id="flx_co2_bbg_year_read" name="flx_co2_bbg_year" domain_ref="bbg_clim" operation="instant" freq_offset="1ts"/> |
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61 | </file> |
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62 | |
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63 | <file id="reftemp_file" mode="read" output_freq="1ts" cyclic="true"> |
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64 | <field id="reftemp_read" name="temperature" domain_ref="reftemp" operation="instant" freq_offset="1ts"/> |
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65 | </file> |
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66 | |
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67 | <file id="woodharvest_file" mode="read" output_freq="1ts" cyclic="true"> |
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68 | <field id="woodharvest_read" name="woodharvest" domain_ref="woodharvest" operation="instant" freq_offset="1ts"/> |
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69 | </file> |
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70 | |
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71 | |
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72 | |
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73 | <file id="interp_diag" output_freq="1ts" sync_freq="1ts"> |
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74 | <field_group domain_ref="domain_landpoints" operation="once" default_value="9.96921e+36"> |
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75 | <field id="interp_diag_aveget" name="aveget" /> |
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76 | <field id="interp_diag_vegetrefrac" name="vegetrefrac" axis_ref="nvm"/> |
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77 | <field id="interp_diag_atext" name="atext" /> |
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78 | <field id="interp_diag_soilclass" name="soilclass" axis_ref="ncsm"/> |
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79 | <field id="interp_diag_clayfraction" name="clayfraction" /> |
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80 | <field id="interp_diag_aslope" name="aslope" /> |
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81 | <field id="interp_diag_reinf_slope" name="reinf_slope" /> |
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82 | |
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83 | <field id="interp_diag_alb_vis" name="alb_vis" /> |
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84 | <field id="interp_diag_alb_nir" name="alb_nir" /> |
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85 | |
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86 | <field id="interp_diag_N_qt_WRICE_year" name="wrice" /> |
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87 | <field id="interp_diag_N_qt_OTHER_year" name="other" /> |
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88 | <field id="interp_diag_flx_co2_bbg_year" name="co2_bbg" /> |
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89 | |
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90 | </field_group> |
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91 | <field id="interp_diag_lai" grid_ref="from_lai" name="lai" operation="once" default_value="9.96921e+36" enabled="false"/> |
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92 | <field field_ref="mask_alb_read" operation="once" default_value="9.96921e+36" freq_offset="0ts" enabled="false"/> |
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93 | </file> |
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94 | |
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95 | </file_definition> |
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96 | |
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97 | |
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98 | <field_definition> |
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99 | |
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100 | <field_group enabled="false" read_access="true"> |
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101 | |
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102 | <field_group id="soil_color" enabled="false"> |
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103 | <field id="soilcolor0" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 0 </field> |
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104 | <field id="soilcolor1" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 1 </field> |
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105 | <field id="soilcolor2" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 2 </field> |
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106 | <field id="soilcolor3" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 3 </field> |
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107 | <field id="soilcolor4" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 4 </field> |
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108 | <field id="soilcolor5" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 5 </field> |
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109 | <field id="soilcolor6" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 6 </field> |
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110 | <field id="soilcolor7" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 7 </field> |
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111 | <field id="soilcolor8" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 8 </field> |
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112 | <field id="soilcolor9" field_ref="soilcolor" domain_ref="from_soil" > soilcolor == 9 </field> |
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113 | </field_group> |
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114 | |
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115 | <field_group id="soil_text" field_ref="soiltext" domain_ref="from_soil" enabled="true" read_access="true"> |
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116 | <field id="soiltext1" > soiltext == 1 </field> |
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117 | <field id="soiltext2" > soiltext == 2 </field> |
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118 | <field id="soiltext3" > soiltext == 3 </field> |
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119 | <field id="soiltext4" > soiltext == 4 </field> |
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120 | <field id="soiltext5" > soiltext == 5 </field> |
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121 | <field id="soiltext6" > soiltext == 6 </field> |
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122 | <field id="soiltext7" > soiltext == 7 </field> |
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123 | <field id="soiltext8" > soiltext == 8 </field> |
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124 | <field id="soiltext9" > soiltext == 9 </field> |
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125 | <field id="soiltext10" > soiltext == 10 </field> |
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126 | <field id="soiltext11" > soiltext == 11 </field> |
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127 | <field id="soiltext12" > soiltext == 12 </field> |
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128 | </field_group> |
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129 | |
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130 | |
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131 | <field id="frac_veget" field_ref="maxvegetfrac_read" domain_ref="from_pft" read_access="true" enabled="true" /> |
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132 | <field id="frac_veget_frac" field_ref="maxvegetfrac_mask" domain_ref="from_pft" read_access="true" enabled="true" /> |
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133 | |
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134 | <field id="slope_tmp" field_ref="pente_read" domain_ref="from_topo" /> |
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135 | <field id="frac_slope_interp" field_ref="mask_pente_read" domain_ref="from_topo" read_access="true" enabled="true"/> |
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136 | <field id="reinf_slope_interp" domain_ref="from_topo" read_access="true" enabled="true"> (frac_slope_interp > $min_sechiba ) ? 1-slope_tmp/(frac_slope_interp+1e-100) : $slope_default </field> |
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137 | |
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138 | <field id="bg_alb_vis_tmp" field_ref="bg_alb_vis_read" domain_ref="from_albedo" /> |
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139 | <field id="bg_alb_vis_interp" field_ref="bg_alb_vis_tmp" read_access="true" enabled="true" > this == $missing_value ? $albbg_vis_default : this </field> |
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140 | |
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141 | <field id="bg_alb_nir_tmp" field_ref="bg_alb_nir_read" domain_ref="from_albedo" /> |
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142 | <field id="bg_alb_nir_interp" field_ref="bg_alb_nir_tmp" read_access="true" enabled="true" > this == $missing_value ? $albbg_nir_default : this </field> |
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143 | |
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144 | <field id="lai_tmp" field_ref="lai_read" grid_ref="from_lai" /> |
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145 | <field id="frac_lai_interp" field_ref="mask_lai_read" grid_ref="from_lai" read_access="true" enabled="true" /> |
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146 | <field id="lai_interp" field_ref="lai_tmp" read_access="true" enabled="true" > lai_tmp/(frac_lai_interp+1e-100) </field> <!-- renormalize --> |
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147 | |
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148 | <field id="N_qt_WRICE_year_interp" field_ref="N_qt_WRICE_year_read" domain_ref="from_fertilizer" read_access="true" enabled="true" /> |
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149 | <field id="N_qt_OTHER_year_interp" field_ref="N_qt_OTHER_year_read" domain_ref="from_fertilizer" read_access="true" enabled="true" /> |
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150 | |
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151 | <field id="flx_co2_bbg_year_interp" field_ref="flx_co2_bbg_year_read" domain_ref="from_bbg_clim" read_access="true" enabled="true" /> |
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152 | |
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153 | <field id="reftemp_interp" field_ref="reftemp_read" domain_ref="from_reftemp" read_access="true" enabled="true" /> |
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154 | |
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155 | <field id="woodharvest_interp" field_ref="woodharvest_read" domain_ref="from_woodharvest" read_access="true" enabled="true" /> |
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156 | |
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157 | </field_group> |
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158 | |
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159 | </field_definition> |
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160 | |
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161 | |
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162 | |
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163 | <!-- =========================================================================================================== --> |
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164 | <!-- Definition of output files --> |
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165 | <!-- Definition of variables or groups included in the different files --> |
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166 | <!-- CHANGE THIS FILE BY ADDING THE FILES AND/OR VARIABLES YOU WANT TO PRODUCE --> |
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167 | <!-- Only variables and groups existing in field_def_orchidee.xml can be used --> |
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168 | <!-- =========================================================================================================== --> |
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169 | <file_definition src="./file_def_orchidee.xml"/> |
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170 | |
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171 | |
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172 | <!-- =========================================================================================================== --> |
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173 | <!-- Definition of horizontal domain --> |
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174 | <!-- =========================================================================================================== --> |
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175 | <domain_definition> |
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176 | <domain id="domain_landpoints"/> |
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177 | |
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178 | <domain id="domain_inputfile_moistc" type="rectilinear"> |
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179 | <generate_rectilinear_domain /> |
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180 | </domain> |
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181 | |
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182 | <domain id="domain_inputfile_snow" type="rectilinear"> |
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183 | <generate_rectilinear_domain /> |
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184 | </domain> |
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185 | |
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186 | <!-- <domain id="greordered" domain_ref="domain_landpoints">--> |
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187 | <!-- <reorder_domain invert_lat="true" shift_lon_fraction="0.5" min_lon="0" max_lon="360" />--> |
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188 | <!-- </domain>--> |
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189 | |
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190 | |
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191 | <domain_group id="domain_landpoints"> |
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192 | <domain id="domain_landpoints"/> |
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193 | |
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194 | <domain id="from_soil" > |
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195 | <interpolate_domain order="1" renormalize="false"/> |
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196 | </domain> |
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197 | |
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198 | <domain id="from_pft" > |
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199 | <interpolate_domain order="1" renormalize="false" /> |
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200 | </domain> |
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201 | |
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202 | <domain id="from_topo" > |
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203 | <interpolate_domain order="1" renormalize="false" /> |
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204 | </domain> |
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205 | |
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206 | <domain id="from_albedo" > |
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207 | <interpolate_domain order="1" renormalize="true" detect_missing_value="true"/> |
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208 | </domain> |
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209 | |
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210 | <domain id="from_lai" > |
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211 | <interpolate_domain order="1" renormalize="false" /> |
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212 | </domain> |
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213 | |
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214 | <domain id="from_bbg_clim" > |
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215 | <interpolate_domain order="1" renormalize="false" /> |
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216 | </domain> |
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217 | |
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218 | <domain id="from_fertilizer" > |
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219 | <interpolate_domain order="1" renormalize="false" /> |
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220 | </domain> |
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221 | |
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222 | <domain id="from_reftemp" > |
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223 | <interpolate_domain order="1" renormalize="false" /> |
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224 | </domain> |
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225 | |
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226 | <domain id="from_woodharvest" > |
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227 | <interpolate_domain order="1" renormalize="false" /> |
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228 | </domain> |
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229 | |
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230 | </domain_group> |
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231 | |
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232 | <domain id="soil" type="rectilinear"> |
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233 | <!-- generate_rectilinear_domain bounds_lon_start="-180" bounds_lon_end="180" bounds_lat_start="-90" bounds_lat_end="90"/--> |
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234 | <generate_rectilinear_domain bounds_lon_start="-180" bounds_lon_end="180" bounds_lat_start="90" bounds_lat_end="-90"/> |
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235 | </domain> |
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236 | |
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237 | <domain id="pft" type="rectilinear"> |
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238 | <generate_rectilinear_domain/> |
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239 | </domain> |
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240 | |
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241 | <domain id="topo" type="rectilinear"> |
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242 | <generate_rectilinear_domain/> |
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243 | </domain> |
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244 | |
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245 | <domain id="albedo" type="rectilinear"> |
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246 | <generate_rectilinear_domain /> |
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247 | </domain> |
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248 | |
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249 | <domain id="lai" type="rectilinear"> |
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250 | <generate_rectilinear_domain/> |
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251 | </domain> |
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252 | |
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253 | <domain id="bbg_clim" type="rectilinear"> |
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254 | <generate_rectilinear_domain/> |
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255 | </domain> |
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256 | |
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257 | <domain id="fertilizer" type="rectilinear"> |
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258 | <generate_rectilinear_domain/> |
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259 | </domain> |
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260 | |
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261 | <domain id="reftemp" type="rectilinear"> |
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262 | <generate_rectilinear_domain/> |
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263 | </domain> |
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264 | |
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265 | <domain id="woodharvest" type="rectilinear"> |
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266 | <generate_rectilinear_domain/> |
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267 | </domain> |
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268 | |
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269 | </domain_definition> |
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270 | |
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271 | <!-- =========================================================================================================== --> |
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272 | <!-- Definition of vertical axis and extra dimensions --> |
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273 | <!-- =========================================================================================================== --> |
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274 | <axis_definition> |
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275 | <!-- Vertical axis and extra dimensions --> |
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276 | <axis id="nvm" name="veget" standard_name="model_level_number" long_name="Vegetation types" unit="1"/> |
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277 | <axis id="nlut" name="nlut" standard_name="landusetype4" long_name="Number of land use types specified by LUMIP" unit="1"/> |
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278 | <axis id="ncarb" name="ncarb" standard_name="ncarb" long_name="Number of soil carbon pools" unit="1"/> |
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279 | <axis id="nlaip1" name="laiax" standard_name="model_level_number" long_name="Interface of LAI layers" unit="1"/> |
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280 | <axis id="ngrnd" name="solth" standard_name="model_level_number" long_name="Thermal soil levels" unit="m"/> |
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281 | <axis id="nstm" name="soiltyp" standard_name="model_level_number" long_name="Soil tiles" unit="1"/> |
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282 | <axis id="nnobio" name="nobio" standard_name="model_level_number" long_name="Other surface types" unit="1"/> |
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283 | <axis id="albtyp" standard_name="model_level_number" long_name="Albedo types" unit="1"/> |
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284 | <axis id="nslm" name="solay" standard_name="model_level_number" long_name="Hydrological soil levels" unit="1"/> |
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285 | <axis id="ncsm" name="ncsm" standard_name="model_level_number" long_name="Soil type" unit="1"/> |
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286 | <axis id="nsnow" name="snowlev" standard_name="model_level_number" long_name="Snow levels" unit="1"/> |
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287 | <axis id="P10" standard_name="model_level_number" long_name="Pool 10 years" unit="1"/> |
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288 | <axis id="P100" standard_name="model_level_number" long_name="Pool 100 years" unit="1"/> |
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289 | <axis id="P11" standard_name="model_level_number" long_name="Pool 10 years + 1" unit="1"/> |
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290 | <axis id="P101" standard_name="model_level_number" long_name="Pool 100 years + 1" unit="1"/> |
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291 | <axis id="lai_time" /> |
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292 | </axis_definition> |
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293 | |
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294 | |
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295 | <!-- =========================================================================================================== --> |
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296 | <!-- Definition of output and input grids --> |
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297 | <!-- =========================================================================================================== --> |
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298 | <grid_definition> |
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299 | |
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300 | <!-- Definition of output grids --> |
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301 | <grid id="grid_landpoints"> |
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302 | <domain domain_ref="domain_landpoints" /> |
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303 | </grid> |
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304 | |
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305 | <grid id="grid_nslm_nstm"> |
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306 | <domain domain_ref="domain_landpoints" > |
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307 | <interpolate_domain order="1"/> |
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308 | </domain> |
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309 | <axis axis_ref="nslm" /> |
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310 | <axis axis_ref="nstm" /> |
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311 | </grid> |
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312 | |
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313 | <grid id="grid_nvm"> |
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314 | <domain domain_ref="domain_landpoints" /> |
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315 | <axis axis_ref="nvm" /> |
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316 | </grid> |
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317 | |
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318 | <grid id="grid_nlut"> |
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319 | <domain domain_ref="domain_landpoints" /> |
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320 | <axis axis_ref="nlut" /> |
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321 | </grid> |
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322 | |
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323 | <grid id="grid_ncarb"> |
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324 | <domain domain_ref="domain_landpoints" /> |
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325 | <axis axis_ref="ncarb" /> |
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326 | </grid> |
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327 | |
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328 | <grid id="grid_nstm"> |
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329 | <domain domain_ref="domain_landpoints" /> |
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330 | <axis axis_ref="nstm" /> |
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331 | </grid> |
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332 | |
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333 | <grid id="grid_nslm"> |
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334 | <domain domain_ref="domain_landpoints" /> |
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335 | <axis axis_ref="nslm" /> |
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336 | </grid> |
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337 | |
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338 | <grid id="grid_ngrnd"> |
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339 | <domain domain_ref="domain_landpoints" /> |
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340 | <axis axis_ref="ngrnd" /> |
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341 | </grid> |
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342 | |
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343 | <grid id="grid_albtyp"> |
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344 | <domain domain_ref="domain_landpoints" /> |
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345 | <axis axis_ref="albtyp" /> |
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346 | </grid> |
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347 | |
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348 | <grid id="grid_nnobio"> |
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349 | <domain domain_ref="domain_landpoints" /> |
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350 | <axis axis_ref="nnobio" /> |
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351 | </grid> |
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352 | |
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353 | <grid id="grid_nlaip1"> |
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354 | <domain domain_ref="domain_landpoints" /> |
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355 | <axis axis_ref="nlaip1" /> |
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356 | </grid> |
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357 | |
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358 | <grid id="grid_nsnow"> |
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359 | <domain domain_ref="domain_landpoints" /> |
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360 | <axis axis_ref="nsnow" /> |
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361 | </grid> |
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362 | |
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363 | <grid id="grid_nsnow2"> |
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364 | <domain domain_ref="domain_landpoints" > |
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365 | <interpolate_domain order="1"/> |
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366 | </domain> |
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367 | <axis axis_ref="nsnow" /> |
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368 | </grid> |
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369 | |
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370 | <grid id="grid_nvm_nstm"> |
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371 | <domain domain_ref="domain_landpoints" /> |
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372 | <axis axis_ref="nvm" /> |
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373 | <axis axis_ref="nstm" /> |
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374 | </grid> |
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375 | |
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376 | <grid id="grid_P10"> |
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377 | <domain domain_ref="domain_landpoints" /> |
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378 | <axis axis_ref="P10" /> |
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379 | </grid> |
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380 | |
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381 | <grid id="grid_P11"> |
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382 | <domain domain_ref="domain_landpoints" /> |
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383 | <axis axis_ref="P11" /> |
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384 | </grid> |
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385 | |
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386 | <grid id="grid_P100"> |
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387 | <domain domain_ref="domain_landpoints" /> |
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388 | <axis axis_ref="P100" /> |
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389 | </grid> |
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390 | |
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391 | <grid id="grid_P101"> |
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392 | <domain domain_ref="domain_landpoints" /> |
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393 | <axis axis_ref="P101" /> |
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394 | </grid> |
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395 | |
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396 | <!-- Definition of input grids --> |
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397 | <grid id="grid_inputfile_moistc"> |
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398 | <domain domain_ref="domain_inputfile_moistc"/> |
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399 | <axis axis_ref="nslm" /> |
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400 | <axis axis_ref="nstm" /> |
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401 | </grid> |
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402 | |
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403 | <grid id="grid_inputfile_snow"> |
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404 | <domain domain_ref="domain_inputfile_snow"/> |
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405 | <axis axis_ref="nsnow" /> |
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406 | </grid> |
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407 | |
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408 | <grid id="from_lai"> |
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409 | <domain domain_ref="from_lai" /> |
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410 | <axis axis_ref="nvm" /> |
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411 | <axis axis_ref="lai_time" /> |
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412 | </grid> |
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413 | |
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414 | <grid id="lai"> |
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415 | <domain domain_ref="lai" /> |
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416 | <axis axis_ref="nvm" /> |
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417 | <axis axis_ref="lai_time" /> |
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418 | </grid> |
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419 | |
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420 | </grid_definition> |
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421 | |
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422 | |
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423 | <!-- =========================================================================================================== --> |
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424 | <!-- Variable denfinition --> |
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425 | <!-- =========================================================================================================== --> |
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426 | |
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427 | <variable_definition> |
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428 | |
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429 | <variable id="slope_default" type="double">xxx</variable> |
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430 | <variable id="slope_noreinf" type="double">xxx</variable> |
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431 | <variable id="min_sechiba" type="double">xxx</variable> |
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432 | <variable id="albbg_vis_default" type="double">xxx</variable> |
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433 | <variable id="albbg_nir_default" type="double">xxx</variable> |
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434 | |
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435 | </variable_definition> |
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436 | |
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437 | |
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438 | </context> |
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