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sechiba.f90 @ 8566

Last change on this file since 8566 was 8557, checked in by josefine.ghattas, 8 weeks ago
Added print for pixel and lat/lon as done in the trunk. This is usefull information printed only once.
Property svn:keywords set to `Revision Date HeadURL Date Author Revision`
File size: 119.1 KB

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1	! ==============================================================================================================================\n
2	! MODULE : sechiba
3	!
4	! CONTACT : orchidee-help _at_ listes.ipsl.fr
5	!
6	! LICENCE : IPSL (2006)
7	! This software is governed by the CeCILL licence see ORCHIDEE/ORCHIDEE_CeCILL.LIC
8	!
9	!>\BRIEF Structures the calculation of atmospheric and hydrological
10	!! variables by calling diffuco_main, enerbil_main, hydrol_main,
11	!! condveg_main and thermosoil_main. Note that sechiba_main
12	!! calls slowproc_main and thus indirectly calculates the biogeochemical
13	!! processes as well.
14	!!
15	!!\n DESCRIPTION : :: shumdiag, :: litterhumdiag and :: stempdiag :: ftempdiag are not
16	!! saved in the restart file because at the first time step because they
17	!! are recalculated. However, they must be saved as they are in slowproc
18	!! which is called before the modules which calculate them.
19	!!
20	!! RECENT CHANGE(S): November 2020: It is possible to define soil hydraulic parameters from maps,
21	!! as needed for the SP-MIP project (Tafasca Salma and Ducharne Agnes).
22	!! Here, it leads to declare and allocate global variables.
23	!!
24	!! REFERENCE(S) : None
25	!!
26	!! SVN :
27	!! $HeadURL$
28	!! $Date$
29	!! $Revision$
30	!! \n
31	!_ ================================================================================================================================
32
33	MODULE sechiba
34
35	USE ioipsl
36	USE xios_orchidee
37	USE constantes
38	USE time, ONLY : one_day, dt_sechiba
39	USE constantes_soil
40	USE pft_parameters
41	USE grid
42	USE diffuco
43	USE condveg
44	USE enerbil
45	USE hydrol
46	USE thermosoil
47	USE sechiba_io_p
48	USE slowproc
49	USE routing_wrapper
50	USE ioipsl_para
51	USE chemistry
52
53	IMPLICIT NONE
54
55	PRIVATE
56	PUBLIC sechiba_main, sechiba_initialize, sechiba_clear, sechiba_interface_orchidee_inca, sechiba_xios_initialize
57
58	INTEGER(i_std), SAVE :: printlev_loc !! local printlev for this module
59	!$OMP THREADPRIVATE(printlev_loc)
60	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexveg !! indexing array for the 3D fields of vegetation
61	!$OMP THREADPRIVATE(indexveg)
62	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexlai !! indexing array for the 3D fields of vegetation
63	!$OMP THREADPRIVATE(indexlai)
64	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexnobio !! indexing array for the 3D fields of other surfaces (ice,
65	!! lakes, ...)
66	!$OMP THREADPRIVATE(indexnobio)
67	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexsoil !! indexing array for the 3D fields of soil types (kjpindex*nstm)
68	!$OMP THREADPRIVATE(indexsoil)
69	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexgrnd !! indexing array for the 3D ground heat profiles (kjpindex*ngrnd)
70	!$OMP THREADPRIVATE(indexgrnd)
71	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexlayer !! indexing array for the 3D fields of soil layers in CWRR (kjpindex*nslm)
72	!$OMP THREADPRIVATE(indexlayer)
73	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexnslm !! indexing array for the 3D fields of diagnostic soil layers (kjpindex*nslm)
74	!$OMP THREADPRIVATE(indexnslm)
75	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexalb !! indexing array for the 2 fields of albedo
76	!$OMP THREADPRIVATE(indexalb)
77	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: indexsnow !! indexing array for the 3D fields snow layers
78	!$OMP THREADPRIVATE(indexsnow)
79	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: veget !! Fraction of vegetation type (unitless, 0-1)
80	!$OMP THREADPRIVATE(veget)
81	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: veget_max !! Max. fraction of vegetation type (LAI -> infty, unitless)
82	!$OMP THREADPRIVATE(veget_max)
83	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: tot_bare_soil !! Total evaporating bare soil fraction
84	!$OMP THREADPRIVATE(tot_bare_soil)
85	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: height !! Vegetation Height (m)
86	!$OMP THREADPRIVATE(height)
87	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: totfrac_nobio !! Total fraction of continental ice+lakes+cities+...
88	!! (unitless, 0-1)
89	!$OMP THREADPRIVATE(totfrac_nobio)
90	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: floodout !! Flow out of floodplains from hydrol
91	!$OMP THREADPRIVATE(floodout)
92	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: runoff !! Surface runoff calculated by hydrol
93	!! @tex $(kg m^{-2})$ @endtex
94	!$OMP THREADPRIVATE(runoff)
95	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: drainage !! Deep drainage calculatedd by hydrol
96	!! @tex $(kg m^{-2})$ @endtex
97	!$OMP THREADPRIVATE(drainage)
98	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: returnflow !! Water flow from lakes and swamps which returns to
99	!! the grid box @tex $(kg m^{-2})$ @endtex
100	!$OMP THREADPRIVATE(returnflow)
101	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: reinfiltration !! Routed water which returns into the soil
102	!$OMP THREADPRIVATE(reinfiltration)
103	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: irrigation !! Irrigation flux taken from the routing reservoirs and
104	!! being put into the upper layers of the soil
105	!! @tex $(kg m^{-2})$ @endtex
106	!$OMP THREADPRIVATE(irrigation)
107	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: emis !! Surface emissivity (unitless)
108	!$OMP THREADPRIVATE(emis)
109	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: z0h !! Surface roughness for heat (m)
110	!$OMP THREADPRIVATE(z0h)
111	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: z0m !! Surface roughness for momentum (m)
112	!$OMP THREADPRIVATE(z0m)
113	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: roughheight !! Effective height for roughness (m)
114	!$OMP THREADPRIVATE(roughheight)
115	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: reinf_slope !! slope coefficient (reinfiltration)
116	!$OMP THREADPRIVATE(reinf_slope)
117	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: reinf_slope_soil !! slope coefficient (reinfiltration) per soil tile
118	!$OMP THREADPRIVATE(reinf_slope_soil)
119
120
121	!salma: adding soil hydraulic params
122	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: ks !! Saturated soil conductivity (mm d^{-1})
123	!$OMP THREADPRIVATE(ks)
124	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: nvan !! Van Genushten n parameter (unitless)
125	!$OMP THREADPRIVATE(nvan)
126	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: avan !! Van Genushten alpha parameter (mm ^{-1})
127	!$OMP THREADPRIVATE(avan)
128	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: mcr !! Residual soil moisture (m^{3} m^{-3})
129	!$OMP THREADPRIVATE(mcr)
130	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: mcs !! Saturated soil moisture (m^{3} m^{-3})
131	!$OMP THREADPRIVATE(mcs)
132	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: mcfc !! Volumetric water content at field capacity (m^{3} m^{-3})
133	!$OMP THREADPRIVATE(mcfc)
134	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: mcw !! Volumetric water content at wilting point (m^{3} m^{-3})
135	!$OMP THREADPRIVATE(mcw)
136	!end salma:adding soil hydraulic params
137
138
139	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: shumdiag !! Mean relative soil moisture in the different levels used
140	!! by thermosoil.f90 (unitless, 0-1)
141	!$OMP THREADPRIVATE(shumdiag)
142	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: shumdiagSAT !! Mean relative soil moisture (0-1, unitless)
143	!! with respect to(mcs-mcw)
144	!$OMP THREADPRIVATE(shumdiagSAT)
145	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: shumdiag_perma !! Saturation degree of the soil
146	!$OMP THREADPRIVATE(shumdiag_perma)
147	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: k_litt !! litter cond.
148	!$OMP THREADPRIVATE(k_litt)
149	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: litterhumdiag !! Litter dryness factor (unitless, 0-1)
150	!$OMP THREADPRIVATE(litterhumdiag)
151	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: litterhumdiagSAT!! Litter dryness factor (unitless, 0-1)
152	!$OMP THREADPRIVATE(litterhumdiagSAT)
153	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: stempdiag !! Temperature which controls canopy evolution (K)
154	!$OMP THREADPRIVATE(stempdiag)
155	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: ftempdiag !! Temperature over the full soil column for river temperature (K)
156	!$OMP THREADPRIVATE(ftempdiag)
157	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: qsintveg !! Water on vegetation due to interception
158	!! @tex $(kg m^{-2})$ @endtex
159	!$OMP THREADPRIVATE(qsintveg)
160	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: vbeta2 !! Interception resistance (unitless,0-1)
161	!$OMP THREADPRIVATE(vbeta2)
162	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: vbeta3 !! Vegetation resistance (unitless,0-1)
163	!$OMP THREADPRIVATE(vbeta3)
164	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: vbeta3pot !! Potential vegetation resistance
165	!$OMP THREADPRIVATE(vbeta3pot)
166	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: gsmean !! Mean stomatal conductance for CO2 (mol m-2 s-1)
167	!$OMP THREADPRIVATE(gsmean)
168	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: cimean !! STOMATE: mean intercellular CO2 concentration (ppm)
169	!$OMP THREADPRIVATE(cimean)
170	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: vevapwet !! Interception loss over each PFT
171	!! @tex $(kg m^{-2} days^{-1})$ @endtex
172	!$OMP THREADPRIVATE(vevapwet)
173	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: transpir !! Transpiration @tex $(kg m^{-2} days^{-1})$ @endtex
174	!$OMP THREADPRIVATE(transpir)
175	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: transpot !! Potential Transpiration (needed for irrigation)
176	!$OMP THREADPRIVATE(transpot)
177	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: qsintmax !! Maximum amount of water in the canopy interception
178	!! reservoir @tex $(kg m^{-2})$ @endtex
179	!$OMP THREADPRIVATE(qsintmax)
180	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: rveget !! Surface resistance for the vegetation
181	!! @tex $(s m^{-1})$ @endtex
182	!$OMP THREADPRIVATE(rveget)
183	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: rstruct !! Vegetation structural resistance
184	!$OMP THREADPRIVATE(rstruct)
185	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: snow_nobio !! Snow mass of non-vegetative surfaces
186	!! @tex $(kg m^{-2})$ @endtex
187	!$OMP THREADPRIVATE(snow_nobio)
188	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: snow_nobio_age !! Snow age on non-vegetative surfaces (days)
189	!$OMP THREADPRIVATE(snow_nobio_age)
190	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: frac_nobio !! Fraction of non-vegetative surfaces (continental ice,
191	!! lakes, ...) (unitless, 0-1)
192	!$OMP THREADPRIVATE(frac_nobio)
193	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:,:):: assim_param !! min+max+opt temps, vcmax, vjmax for photosynthesis
194	!$OMP THREADPRIVATE(assim_param)
195	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: lai !! Surface foliaire
196	!$OMP THREADPRIVATE(lai)
197	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: gpp !! STOMATE: GPP. gC/m**2 of total area
198	!$OMP THREADPRIVATE(gpp)
199	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:) :: temp_growth !! Growth temperature (C) - Is equal to t2m_month
200	!$OMP THREADPRIVATE(temp_growth)
201	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: humrel !! Relative humidity
202	!$OMP THREADPRIVATE(humrel)
203	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: vegstress !! Vegetation moisture stress (only for vegetation growth)
204	!$OMP THREADPRIVATE(vegstress)
205	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:,:):: frac_age !! Age efficacity from STOMATE for isoprene
206	!$OMP THREADPRIVATE(frac_age)
207	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: soiltile !! Fraction of each soil tile (0-1, unitless)
208	!$OMP THREADPRIVATE(soiltile)
209	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: fraclut !! Fraction of each landuse tile (0-1, unitless)
210	!$OMP THREADPRIVATE(fraclut)
211	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: nwdFraclut !! Fraction of non-woody vegetation in each landuse tile (0-1, unitless)
212	!$OMP THREADPRIVATE(nwdFraclut)
213	INTEGER(i_std), ALLOCATABLE, SAVE, DIMENSION (:) :: njsc !! Index of the dominant soil textural class in the grid cell (1-nscm, unitless)
214	!$OMP THREADPRIVATE(njsc)
215	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: vbeta1 !! Snow resistance
216	!$OMP THREADPRIVATE(vbeta1)
217	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: vbeta4 !! Bare soil resistance
218	!$OMP THREADPRIVATE(vbeta4)
219	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: vbeta5 !! Floodplains resistance
220	!$OMP THREADPRIVATE(vbeta5)
221	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: soilcap !!
222	!$OMP THREADPRIVATE(soilcap)
223	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: soilflx !!
224	!$OMP THREADPRIVATE(soilflx)
225	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: temp_sol !! Soil temperature
226	!$OMP THREADPRIVATE(temp_sol)
227	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: qsurf !! near soil air moisture
228	!$OMP THREADPRIVATE(qsurf)
229	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: flood_res !! flood reservoir estimate
230	!$OMP THREADPRIVATE(flood_res)
231	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: flood_frac !! flooded fraction
232	!$OMP THREADPRIVATE(flood_frac)
233	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: snow !! Snow mass [Kg/m^2]
234	!$OMP THREADPRIVATE(snow)
235	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: snow_age !! Snow age @tex ($d$) @endtex
236	!$OMP THREADPRIVATE(snow_age)
237	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: drysoil_frac !! Fraction of visibly (albedo) Dry soil (Between 0 and 1)
238	!$OMP THREADPRIVATE(drysoil_frac)
239	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: evap_bare_lim !! Bare soil stress
240	!$OMP THREADPRIVATE(evap_bare_lim)
241	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: evap_bare_lim_ns !! Bare soil stress
242	!$OMP THREADPRIVATE(evap_bare_lim_ns)
243	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: co2_flux !! CO2 flux (gC/m**2 of average ground/one_day)
244	!$OMP THREADPRIVATE(co2_flux)
245	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: evapot !! Soil Potential Evaporation
246	!$OMP THREADPRIVATE(evapot)
247	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: evapot_corr !! Soil Potential Evaporation Correction (Milly 1992)
248	!$OMP THREADPRIVATE(evapot_corr)
249	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: vevapflo !! Floodplains evaporation
250	!$OMP THREADPRIVATE(vevapflo)
251	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: vevapsno !! Snow evaporation
252	!$OMP THREADPRIVATE(vevapsno)
253	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: vevapnu !! Bare soil evaporation
254	!$OMP THREADPRIVATE(vevapnu)
255	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: tot_melt !! Total melt
256	!$OMP THREADPRIVATE(tot_melt)
257	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: vbeta !! Resistance coefficient
258	!$OMP THREADPRIVATE(vbeta)
259	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: rau !! Density
260	!$OMP THREADPRIVATE(rau)
261	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: deadleaf_cover !! Fraction of soil covered by dead leaves
262	!$OMP THREADPRIVATE(deadleaf_cover)
263	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: ptnlev1 !! 1st level Different levels soil temperature
264	!$OMP THREADPRIVATE(ptnlev1)
265	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: mc_layh !! Volumetric soil moisture for each layer in hydrol(liquid + ice) (m3/m3)
266	!$OMP THREADPRIVATE(mc_layh)
267	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: mcl_layh !! Volumetric soil moisture for each layer in hydrol(liquid) (m3/m3)
268	!$OMP THREADPRIVATE(mcl_layh)
269	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: soilmoist !! Total soil moisture content for each layer in hydrol(liquid + ice) (mm)
270	!$OMP THREADPRIVATE(soilmoist)
271
272	LOGICAL, SAVE :: l_first_sechiba = .TRUE. !! Flag controlling the intialisation (true/false)
273	!$OMP THREADPRIVATE(l_first_sechiba)
274
275	! Variables related to snow processes calculations
276
277	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:) :: frac_snow_veg !! Snow cover fraction on vegetation (unitless)
278	!$OMP THREADPRIVATE(frac_snow_veg)
279	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:,:) :: frac_snow_nobio !! Snow cover fraction on continental ice, lakes, etc (unitless)
280	!$OMP THREADPRIVATE(frac_snow_nobio)
281	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:,:) :: snowrho !! snow density for each layer
282	!$OMP THREADPRIVATE(snowrho)
283	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:,:) :: snowheat !! snow heat content for each layer (J/m2)
284	!$OMP THREADPRIVATE(snowheat)
285	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:,:) :: snowgrain !! snow grain size (m)
286	!$OMP THREADPRIVATE(snowgrain)
287	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:,:) :: snowtemp !! snow temperature profile (K)
288	!$OMP THREADPRIVATE(snowtemp)
289	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:,:) :: snowdz !! snow layer thickness (m)
290	!$OMP THREADPRIVATE(snowdz)
291	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:) :: gtemp !! soil surface temperature
292	!$OMP THREADPRIVATE(gtemp)
293	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: pgflux !! net energy into snow pack
294	!$OMP THREADPRIVATE(pgflux)
295	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:,:) :: cgrnd_snow !! Integration coefficient for snow numerical scheme
296	!$OMP THREADPRIVATE(cgrnd_snow)
297	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:,:) :: dgrnd_snow !! Integration coefficient for snow numerical scheme
298	!$OMP THREADPRIVATE(dgrnd_snow)
299	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:) :: lambda_snow !! Coefficient of the linear extrapolation of surface temperature
300	!! from the first and second snow layers
301	!$OMP THREADPRIVATE(lambda_snow)
302	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION(:) :: temp_sol_add !! Additional energy to melt snow for snow ablation case (K)
303	!$OMP THREADPRIVATE(temp_sol_add)
304	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: root_deficit !! water deficit to reach IRRIGATION SOIL MOISTURE TARGET
305	!$OMP THREADPRIVATE(root_deficit)
306	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: irrig_frac !! Irrig. fraction interpolated in routing, and saved to pass to slowproc if irrigated_soiltile = .TRUE.
307	!$OMP THREADPRIVATE(irrig_frac)
308	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: irrigated_next !! Dynamic irrig. area, calculated in slowproc and passed to routing
309	!! @tex $(m^{-2})$ @endtex
310	!$OMP THREADPRIVATE(irrigated_next)
311	REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: fraction_aeirrig_sw !! Fraction of area equipped for irrigation from surface water, of irrig_frac
312	!! 1.0 here corresponds to irrig_frac, not grid cell
313	!$OMP THREADPRIVATE(fraction_aeirrig_sw)
314
315	CONTAINS
316
317
318	!! =============================================================================================================================
319	!! SUBROUTINE: sechiba_xios_initialize
320	!!
321	!>\BRIEF Initialize xios dependant defintion before closing context defintion
322	!!
323	!! DESCRIPTION: Initialize xios dependant defintion before closing context defintion
324	!!
325	!! \n
326	!_ ==============================================================================================================================
327
328	SUBROUTINE sechiba_xios_initialize
329	LOGICAL :: lerr
330
331	IF (xios_orchidee_ok) THEN
332	lerr=xios_orchidee_setvar('min_sechiba',min_sechiba)
333	CALL slowproc_xios_initialize
334	CALL condveg_xios_initialize
335	CALL chemistry_xios_initialize
336	CALL thermosoil_xios_initialize
337	CALL routing_wrapper_xios_initialize
338	END IF
339	IF (printlev_loc>=3) WRITE(numout,*) 'End sechiba_xios_initialize'
340
341	END SUBROUTINE sechiba_xios_initialize
342
343
344
345
346	!! =============================================================================================================================
347	!! SUBROUTINE: sechiba_initialize
348	!!
349	!>\BRIEF Initialize all prinicipal modules by calling their "_initialize" subroutines
350	!!
351	!! DESCRIPTION: Initialize all prinicipal modules by calling their "_initialize" subroutines
352	!!
353	!! \n
354	!_ ==============================================================================================================================
355
356	SUBROUTINE sechiba_initialize( &
357	kjit, kjpij, kjpindex, index, &
358	lalo, contfrac, neighbours, resolution, zlev, &
359	u, v, qair, temp_air, &
360	petAcoef, peqAcoef, petBcoef, peqBcoef, &
361	precip_rain, precip_snow, lwdown, swnet, swdown, &
362	pb, rest_id, hist_id, hist2_id, &
363	rest_id_stom, hist_id_stom, hist_id_stom_IPCC, &
364	coastalflow, riverflow, tsol_rad, vevapp, qsurf_out, &
365	z0m_out, z0h_out, albedo, fluxsens, fluxlat, emis_out, &
366	temp_sol_new, tq_cdrag)
367
368	!! 0.1 Input variables
369	INTEGER(i_std), INTENT(in) :: kjit !! Time step number (unitless)
370	INTEGER(i_std), INTENT(in) :: kjpij !! Total size of the un-compressed grid
371	!! (unitless)
372	INTEGER(i_std), INTENT(in) :: kjpindex !! Domain size - terrestrial pixels only
373	!! (unitless)
374	INTEGER(i_std),INTENT (in) :: rest_id !! _Restart_ file identifier (unitless)
375	INTEGER(i_std),INTENT (in) :: hist_id !! _History_ file identifier (unitless)
376	INTEGER(i_std),INTENT (in) :: hist2_id !! _History_ file 2 identifier (unitless)
377	INTEGER(i_std),INTENT (in) :: rest_id_stom !! STOMATE's _Restart_ file identifier
378	!! (unitless)
379	INTEGER(i_std),INTENT (in) :: hist_id_stom !! STOMATE's _History_ file identifier
380	!! (unitless)
381	INTEGER(i_std),INTENT(in) :: hist_id_stom_IPCC !! STOMATE's IPCC _history_ file file
382	!! identifier (unitless)
383	REAL(r_std),DIMENSION (kjpindex,2), INTENT (in) :: lalo !! Geographic coordinates (latitude,longitude)
384	!! for grid cells (degrees)
385	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: contfrac !! Fraction of continent in the grid
386	!! (unitless, 0-1)
387	INTEGER(i_std),DIMENSION (kjpindex), INTENT (in) :: index !! Indices of the pixels on the map.
388	!! Sechiba uses a reduced grid excluding oceans
389	!! ::index contains the indices of the
390	!! terrestrial pixels only! (unitless)
391	INTEGER(i_std), DIMENSION (kjpindex,NbNeighb), INTENT(in):: neighbours !! Neighboring grid points if land!(unitless)
392	REAL(r_std), DIMENSION (kjpindex,2), INTENT(in) :: resolution !! Size in x and y of the grid (m)
393
394	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: u !! Lowest level wind speed in direction u
395	!! @tex $(m.s^{-1})$ @endtex
396	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: v !! Lowest level wind speed in direction v
397	!! @tex $(m.s^{-1})$ @endtex
398	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: zlev !! Height of first layer (m)
399	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: qair !! Lowest level specific humidity
400	!! @tex $(kg kg^{-1})$ @endtex
401	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: precip_rain !! Rain precipitation
402	!! @tex $(kg m^{-2})$ @endtex
403	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: precip_snow !! Snow precipitation
404	!! @tex $(kg m^{-2})$ @endtex
405	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: lwdown !! Down-welling long-wave flux
406	!! @tex $(W m^{-2})$ @endtex
407	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: swnet !! Net surface short-wave flux
408	!! @tex $(W m^{-2})$ @endtex
409	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: swdown !! Down-welling surface short-wave flux
410	!! @tex $(W m^{-2})$ @endtex
411	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: temp_air !! Air temperature (K)
412	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: petAcoef !! Coefficients A for T from the Planetary
413	!! Boundary Layer
414	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: peqAcoef !! Coefficients A for q from the Planetary
415	!! Boundary Layer
416	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: petBcoef !! Coefficients B for T from the Planetary
417	!! Boundary Layer
418	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: peqBcoef !! Coefficients B for q from the Planetary
419	!! Boundary Layer
420	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: pb !! Surface pressure (hPa)
421
422
423	!! 0.2 Output variables
424	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: coastalflow !! Outflow on coastal points by small basins.
425	!! This is the water which flows in a disperse
426	!! way into the ocean
427	!! @tex $(kg dt_routing^{-1})$ @endtex
428	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: riverflow !! Outflow of the major rivers.
429	!! The flux will be located on the continental
430	!! grid but this should be a coastal point
431	!! @tex $(kg dt_routing^{-1})$ @endtex
432	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: tsol_rad !! Radiative surface temperature
433	!! @tex $(W m^{-2})$ @endtex
434	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: vevapp !! Total of evaporation
435	!! @tex $(kg m^{-2} days^{-1})$ @endtex
436
437	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: qsurf_out !! Surface specific humidity
438	!! @tex $(kg kg^{-1})$ @endtex
439	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: z0m_out !! Surface roughness momentum (output diagnostic, m)
440	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: z0h_out !! Surface roughness heat (output diagnostic, m)
441	REAL(r_std),DIMENSION (kjpindex,2), INTENT (out) :: albedo !! Surface albedo for visible and near-infrared
442	!! (unitless, 0-1)
443	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: fluxsens !! Sensible heat flux
444	!! @tex $(W m^{-2})$ @endtex
445	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: fluxlat !! Latent heat flux
446	!! @tex $(W m^{-2})$ @endtex
447	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: emis_out !! Emissivity (unitless)
448	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: temp_sol_new !! New ground temperature (K)
449
450	!! 0.3 Modified
451	REAL(r_std),DIMENSION (kjpindex), INTENT (inout) :: tq_cdrag !! Surface drag coefficient (-)
452
453	!! 0.4 Local variables
454	INTEGER(i_std) :: ji, jv !! Index (unitless)
455	REAL(r_std), DIMENSION(kjpindex) :: zmaxh_glo !! 2D field of constant soil depth (zmaxh) (m)
456	CHARACTER(LEN=80) :: var_name !! To store variables names for I/O (unitless)
457
458	!_ ================================================================================================================================
459
460	IF (printlev>=3) WRITE(numout,*) 'Start sechiba_initialize'
461
462	!! 1. Initialize variables on first call
463
464	!! 1.1 Initialize most of sechiba's variables
465	CALL sechiba_init (kjit, kjpij, kjpindex, index, rest_id, lalo)
466
467	!! 1.3 Initialize stomate's variables
468
469	CALL slowproc_initialize (kjit, kjpij, kjpindex, &
470	rest_id, rest_id_stom, hist_id_stom, hist_id_stom_IPCC, &
471	index, indexveg, lalo, neighbours, &
472	resolution, contfrac, temp_air, &
473	soiltile, reinf_slope, ks, nvan, &
474	avan, mcr, mcs, mcfc, &
475	mcw, deadleaf_cover, assim_param, &
476	lai, frac_age, height, veget, &
477	frac_nobio, njsc, veget_max, fraclut, &
478	nwdfraclut, tot_bare_soil,totfrac_nobio, qsintmax, &
479	temp_growth, irrigated_next, irrig_frac, fraction_aeirrig_sw, &
480	reinf_slope_soil)
481
482	!! 1.4 Initialize diffusion coefficients
483	CALL diffuco_initialize (kjit, kjpindex, index, &
484	rest_id, lalo, neighbours, resolution, &
485	rstruct, tq_cdrag)
486
487	!! 1.5 Initialize remaining variables of energy budget
488	CALL enerbil_initialize (kjit, kjpindex, index, rest_id, &
489	qair, &
490	temp_sol, temp_sol_new, tsol_rad, &
491	evapot, evapot_corr, qsurf, fluxsens, &
492	fluxlat, vevapp )
493
494
495	!! 1.7 Initialize remaining hydrological variables
496	CALL hydrol_initialize (ks, nvan, avan, mcr, mcs, mcfc, mcw, &
497	kjit, kjpindex, index, rest_id, &
498	njsc, soiltile, veget, veget_max, &
499	humrel, vegstress, drysoil_frac, &
500	shumdiag_perma, qsintveg, &
501	evap_bare_lim, evap_bare_lim_ns, snow, snow_age, snow_nobio, &
502	snow_nobio_age, snowrho, snowtemp, snowgrain, &
503	snowdz, snowheat, &
504	mc_layh, mcl_layh, soilmoist)
505
506
507	!! 1.9 Initialize surface parameters (emissivity, albedo and roughness)
508	CALL condveg_initialize (kjit, kjpindex, index, rest_id, &
509	lalo, neighbours, resolution, contfrac, veget, veget_max, frac_nobio, totfrac_nobio, &
510	zlev, snow, snow_age, snow_nobio, snow_nobio_age, &
511	drysoil_frac, height, snowdz,snowrho, tot_bare_soil, &
512	temp_air, pb, u, v, lai, &
513	emis, albedo, z0m, z0h, roughheight, &
514	frac_snow_veg,frac_snow_nobio)
515
516
517	!! 1.10 Initialization of soil thermodynamics
518	CALL thermosoil_initialize (kjit, kjpindex, rest_id, mcs, &
519	temp_sol_new, snow, shumdiag_perma, &
520	soilcap, soilflx, stempdiag, ftempdiag, &
521	gtemp, &
522	mc_layh, mcl_layh, soilmoist, njsc , &
523	frac_snow_veg,frac_snow_nobio,totfrac_nobio, &
524	snowdz, snowrho, snowtemp, lambda_snow, cgrnd_snow, dgrnd_snow, pb, &
525	ptnlev1)
526
527
528	!! 1.12 Initialize river routing
529	IF ( river_routing .AND. nbp_glo .GT. 1) THEN
530
531	!! 1.12.1 Initialize river routing
532	CALL routing_wrapper_initialize( &
533	kjit, kjpindex, index, &
534	rest_id, hist_id, hist2_id, lalo, &
535	neighbours, resolution, contfrac, stempdiag, ftempdiag, &
536	soiltile, irrig_frac, veget_max, irrigated_next, &
537	returnflow, reinfiltration, irrigation, riverflow, &
538	coastalflow, flood_frac, flood_res )
539	ELSE
540	!! 1.12.2 No routing, set variables to zero
541	riverflow(:) = zero
542	coastalflow(:) = zero
543	returnflow(:) = zero
544	reinfiltration(:) = zero
545	irrigation(:) = zero
546	flood_frac(:) = zero
547	flood_res(:) = zero
548	ENDIF
549
550	!! 1.13 Write internal variables to output fields
551	z0m_out(:) = z0m(:)
552	z0h_out(:) = z0h(:)
553	emis_out(:) = emis(:)
554	qsurf_out(:) = qsurf(:)
555
556	!! 2. Output variables only once
557	zmaxh_glo(:) = zmaxh
558	CALL xios_orchidee_send_field("zmaxh",zmaxh_glo)
559
560	IF (printlev_loc>=3) WRITE(numout,*) 'sechiba_initialize done'
561
562	END SUBROUTINE sechiba_initialize
563
564	!! ==============================================================================================================================\n
565	!! SUBROUTINE : sechiba_main
566	!!
567	!>\BRIEF Main routine for the sechiba module performing three functions:
568	!! calculating temporal evolution of all variables and preparation of output and
569	!! restart files (during the last call only)
570	!!
571	!!\n DESCRIPTION : Main routine for the sechiba module.
572	!! One time step evolution consists of:
573	!! - call sechiba_var_init to do some initialization,
574	!! - call slowproc_main to do some daily calculations
575	!! - call diffuco_main for diffusion coefficient calculation,
576	!! - call enerbil_main for energy budget calculation,
577	!! - call hydrol_main for hydrologic processes calculation,
578	!! - call condveg_main for surface conditions such as roughness, albedo, and emmisivity,
579	!! - call thermosoil_main for soil thermodynamic calculation,
580	!! - call sechiba_end to swap previous to new fields.
581	!!
582	!! RECENT CHANGE(S): None
583	!!
584	!! MAIN OUTPUT VARIABLE(S): Hydrological variables (:: coastalflow and :: riverflow),
585	!! components of the energy budget (:: tsol_rad, :: vevapp, :: fluxsens,
586	!! :: temp_sol_new and :: fluxlat), surface characteristics (:: z0_out, :: emis_out,
587	!! :: tq_cdrag and :: albedo) and land use related CO2 fluxes (:: netco2flux and
588	!! :: fco2_lu, :: fco2_wh, ::fco2_ha)
589	!!
590	!! REFERENCE(S) :
591	!!
592	!! FLOWCHART :
593	!! \latexonly
594	!! \includegraphics[scale = 0.5]{sechibamainflow.png}
595	!! \endlatexonly
596	!! \n
597	!_ ================================================================================================================================
598
599	SUBROUTINE sechiba_main (kjit, kjpij, kjpindex, index, &
600	& ldrestart_read, ldrestart_write, &
601	& lalo, contfrac, neighbours, resolution,&
602	& zlev, u, v, qair, temp_air, epot_air, ccanopy, &
603	& tq_cdrag, petAcoef, peqAcoef, petBcoef, peqBcoef, &
604	& precip_rain, precip_snow, lwdown, swnet, swdown, coszang, pb, &
605	& vevapp, fluxsens, fluxlat, coastalflow, riverflow, &
606	& netco2flux, fco2_lu, fco2_wh, fco2_ha, &
607	& tsol_rad, temp_sol_new, qsurf_out, albedo, emis_out, z0m_out, z0h_out,&
608	& veget_out, lai_out, height_out, &
609	& rest_id, hist_id, hist2_id, rest_id_stom, hist_id_stom, hist_id_stom_IPCC)
610
611	!! 0.1 Input variables
612
613	INTEGER(i_std), INTENT(in) :: kjit !! Time step number (unitless)
614	INTEGER(i_std), INTENT(in) :: kjpij !! Total size of the un-compressed grid
615	!! (unitless)
616	INTEGER(i_std), INTENT(in) :: kjpindex !! Domain size - terrestrial pixels only
617	!! (unitless)
618	INTEGER(i_std),INTENT (in) :: rest_id !! _Restart_ file identifier (unitless)
619	INTEGER(i_std),INTENT (in) :: hist_id !! _History_ file identifier (unitless)
620	INTEGER(i_std),INTENT (in) :: hist2_id !! _History_ file 2 identifier (unitless)
621	INTEGER(i_std),INTENT (in) :: rest_id_stom !! STOMATE's _Restart_ file identifier
622	!! (unitless)
623	INTEGER(i_std),INTENT (in) :: hist_id_stom !! STOMATE's _History_ file identifier
624	!! (unitless)
625	INTEGER(i_std),INTENT(in) :: hist_id_stom_IPCC !! STOMATE's IPCC _history_ file file
626	!! identifier (unitless)
627	LOGICAL, INTENT(in) :: ldrestart_read !! Logical for _restart_ file to read
628	!! (true/false)
629	LOGICAL, INTENT(in) :: ldrestart_write !! Logical for _restart_ file to write
630	!! (true/false)
631	REAL(r_std),DIMENSION (kjpindex,2), INTENT (in) :: lalo !! Geographic coordinates (latitude,longitude)
632	!! for grid cells (degrees)
633	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: contfrac !! Fraction of continent in the grid
634	!! (unitless, 0-1)
635	INTEGER(i_std),DIMENSION (kjpindex), INTENT (in) :: index !! Indices of the pixels on the map.
636	!! Sechiba uses a reduced grid excluding oceans
637	!! ::index contains the indices of the
638	!! terrestrial pixels only! (unitless)
639	INTEGER(i_std), DIMENSION(kjpindex,NbNeighb), INTENT(in) :: neighbours !! Neighboring grid points if land!(unitless)
640	REAL(r_std), DIMENSION (kjpindex,2), INTENT(in) :: resolution !! Size in x and y of the grid (m)
641
642	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: u !! Lowest level wind speed in direction u
643	!! @tex $(m.s^{-1})$ @endtex
644	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: v !! Lowest level wind speed in direction v
645	!! @tex $(m.s^{-1})$ @endtex
646	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: zlev !! Height of first layer (m)
647	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: qair !! Lowest level specific humidity
648	!! @tex $(kg kg^{-1})$ @endtex
649	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: precip_rain !! Rain precipitation
650	!! @tex $(kg m^{-2})$ @endtex
651	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: precip_snow !! Snow precipitation
652	!! @tex $(kg m^{-2})$ @endtex
653	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: lwdown !! Down-welling long-wave flux
654	!! @tex $(W m^{-2})$ @endtex
655	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: coszang !! Cosine of the solar zenith angle (unitless)
656	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: swnet !! Net surface short-wave flux
657	!! @tex $(W m^{-2})$ @endtex
658	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: swdown !! Down-welling surface short-wave flux
659	!! @tex $(W m^{-2})$ @endtex
660	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: temp_air !! Air temperature (K)
661	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: epot_air !! Air potential energy (??J)
662	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: ccanopy !! CO2 concentration in the canopy (ppm)
663	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: petAcoef !! Coefficients A for T from the Planetary
664	!! Boundary Layer
665	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: peqAcoef !! Coefficients A for q from the Planetary
666	!! Boundary Layer
667	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: petBcoef !! Coefficients B for T from the Planetary
668	!! Boundary Layer
669	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: peqBcoef !! Coefficients B for q from the Planetary
670	!! Boundary Layer
671	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: pb !! Surface pressure (hPa)
672
673
674	!! 0.2 Output variables
675
676	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: coastalflow !! Outflow on coastal points by small basins.
677	!! This is the water which flows in a disperse
678	!! way into the ocean
679	!! @tex $(kg dt_routing^{-1})$ @endtex
680	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: riverflow !! Outflow of the major rivers.
681	!! The flux will be located on the continental
682	!! grid but this should be a coastal point
683	!! @tex $(kg dt_routing^{-1})$ @endtex
684	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: tsol_rad !! Radiative surface temperature
685	!! @tex $(W m^{-2})$ @endtex
686	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: vevapp !! Total of evaporation
687	!! @tex $(kg m^{-2} days^{-1})$ @endtex
688
689	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: qsurf_out !! Surface specific humidity
690	!! @tex $(kg kg^{-1})$ @endtex
691	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: z0m_out !! Surface roughness momentum (output diagnostic, m)
692	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: z0h_out !! Surface roughness heat (output diagnostic, m)
693	REAL(r_std),DIMENSION (kjpindex,2), INTENT (out) :: albedo !! Surface albedo for visible and near-infrared
694	!! (unitless, 0-1)
695	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: fluxsens !! Sensible heat flux
696	!! @tex $(W m^{-2})$ @endtex
697	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: fluxlat !! Latent heat flux
698	!! @tex $(W m^{-2})$ @endtex
699	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: emis_out !! Emissivity (unitless)
700	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: netco2flux !! Sum CO2 flux over PFTs
701	!! (gC/m2/dt_sechiba)
702	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: fco2_lu !! Land Cover Change CO2 flux (gC/m2/one_day)
703	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: fco2_wh !! Wood harvest CO2 flux (gC/m2/one_day)
704	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: fco2_ha !! Crop harvest CO2 flux (gC/m2/one_day)
705	REAL(r_std),DIMENSION (kjpindex,nvm), INTENT (out) :: veget_out !! Fraction of vegetation type (unitless, 0-1)
706	REAL(r_std),DIMENSION (kjpindex,nvm), INTENT (out) :: lai_out !! Leaf area index (m^2 m^{-2})
707	REAL(r_std),DIMENSION (kjpindex,nvm), INTENT (out) :: height_out !! Vegetation Height (m)
708
709	!! 0.3 Modified
710
711	REAL(r_std),DIMENSION (kjpindex), INTENT (inout) :: tq_cdrag !! Surface drag coefficient (-)
712	REAL(r_std),DIMENSION (kjpindex), INTENT (inout) :: temp_sol_new !! New ground temperature (K)
713
714	!! 0.4 local variables
715
716	INTEGER(i_std) :: ji, jv !! Index (unitless)
717	REAL(r_std), DIMENSION(kjpindex) :: histvar !! Computations for history files (unitless)
718	REAL(r_std), DIMENSION(kjpindex,nlut) :: histvar2 !! Computations for history files (unitless)
719	CHARACTER(LEN=80) :: var_name !! To store variables names for I/O (unitless)
720	REAL(r_std), DIMENSION(kjpindex) :: sum_treefrac !! Total fraction occupied by trees (0-1, uniless)
721	REAL(r_std), DIMENSION(kjpindex) :: sum_grassfracC3 !! Total fraction occupied by C3 grasses (0-1, unitless)
722	REAL(r_std), DIMENSION(kjpindex) :: sum_grassfracC4 !! Total fraction occupied by C4 grasses (0-1, unitless)
723	REAL(r_std), DIMENSION(kjpindex) :: sum_cropfracC3 !! Total fraction occupied by C3 crops (0-1, unitess)
724	REAL(r_std), DIMENSION(kjpindex) :: sum_cropfracC4 !! Total fraction occupied by C4 crops (0-1, unitess)
725	REAL(r_std), DIMENSION(kjpindex) :: sum_treeFracNdlEvg!! Total fraction occupied by treeFracNdlEvg (0-1, unitess)
726	REAL(r_std), DIMENSION(kjpindex) :: sum_treeFracBdlEvg!! Total fraction occupied by treeFracBdlEvg (0-1, unitess)
727	REAL(r_std), DIMENSION(kjpindex) :: sum_treeFracNdlDcd!! Total fraction occupied by treeFracNdlDcd (0-1, unitess)
728	REAL(r_std), DIMENSION(kjpindex) :: sum_treeFracBdlDcd!! Total fraction occupied by treeFracBdlDcd (0-1, unitess)
729	REAL(r_std), DIMENSION(kjpindex) :: grndflux !! Net energy into soil (W/m2)
730	REAL(r_std), DIMENSION(kjpindex,nsnow) :: snowliq !! Liquid water content (m)
731	REAL(r_std), DIMENSION(kjpindex) :: snow_age_diag !! Only for diag, contains xios_default_val
732	REAL(r_std), DIMENSION(kjpindex,nnobio) :: snow_nobio_age_diag !! Only for diag, contains xios_default_val
733	REAL(r_std), DIMENSION(kjpindex) :: snowage_glob !! Snow age on total area including snow on vegetated and bare soil and nobio area @tex ($d$) @endtex
734	REAL(r_std), DIMENSION(kjpindex,nlut) :: gpplut !! GPP on landuse tile, only for diagnostics
735
736
737	!_ ================================================================================================================================
738
739	IF (printlev_loc>=3) WRITE(numout,*) 'Start sechiba_main kjpindex =',kjpindex
740
741	CALL xios_orchidee_send_field("nav_lat",lalo(:,1))
742	CALL xios_orchidee_send_field("nav_lon",lalo(:,2))
743
744	!! 1. Initialize variables at each time step
745	CALL sechiba_var_init (kjpindex, rau, pb, temp_air)
746
747	!! 2. Compute diffusion coefficients
748	CALL diffuco_main (kjit, kjpindex, index, indexveg, indexlai, u, v, &
749	& zlev, z0m, z0h, roughheight, temp_sol, temp_air, temp_growth, rau, tq_cdrag, qsurf, qair, pb , &
750	& evap_bare_lim, evap_bare_lim_ns, evapot, evapot_corr, snow, flood_frac, flood_res, &
751	& frac_nobio, snow_nobio, totfrac_nobio, &
752	& swnet, swdown, coszang, ccanopy, humrel, veget, veget_max, lai, qsintveg, qsintmax, assim_param, &
753	& vbeta, vbeta1, vbeta2, vbeta3, vbeta3pot, vbeta4, vbeta5, gsmean, rveget, rstruct, cimean, gpp, &
754	& lalo, neighbours, resolution, ptnlev1, precip_rain, frac_age, tot_bare_soil, frac_snow_veg, frac_snow_nobio, &
755	& hist_id, hist2_id)
756
757	!! 3. Compute energy balance
758	CALL enerbil_main (kjit, kjpindex, &
759	& index, indexveg, zlev, lwdown, swnet, epot_air, temp_air, u, v, petAcoef, petBcoef, &
760	& qair, peqAcoef, peqBcoef, pb, rau, vbeta, vbeta1, vbeta2, vbeta3, vbeta3pot, vbeta4, vbeta5, &
761	& emis, soilflx, soilcap, tq_cdrag, humrel, fluxsens, fluxlat, &
762	& vevapp, transpir, transpot, vevapnu, vevapwet, vevapsno, vevapflo, temp_sol, tsol_rad, &
763	& temp_sol_new, qsurf, evapot, evapot_corr, rest_id, hist_id, hist2_id, &
764	& precip_rain, pgflux, snowdz, temp_sol_add)
765
766
767	!! 4. Compute hydrology
768	!! 4.1 Water balance from CWRR module (11 soil layers)
769	CALL hydrol_main (ks, nvan, avan, mcr, mcs, mcfc, mcw, kjit, kjpindex, &
770	& index, indexveg, indexsoil, indexlayer, indexnslm, &
771	& temp_sol_new, floodout, runoff, drainage, frac_nobio, totfrac_nobio, vevapwet, veget, veget_max, njsc, &
772	& qsintmax, qsintveg, vevapnu, vevapsno, vevapflo, snow, snow_age, snow_nobio, snow_nobio_age, &
773	& tot_melt, transpir, precip_rain, precip_snow, returnflow, reinfiltration, irrigation, &
774	& humrel, vegstress, drysoil_frac, evapot, evapot_corr, evap_bare_lim, evap_bare_lim_ns, flood_frac, flood_res, &
775	& shumdiagSAT,litterhumdiagSAT,shumdiag,shumdiag_perma, k_litt, litterhumdiag, soilcap, soiltile, fraclut, reinf_slope_soil, &
776	& rest_id, hist_id, hist2_id,&
777	& contfrac, stempdiag, &
778	& temp_air, pb, u, v, tq_cdrag, swnet, pgflux, &
779	& snowrho,snowtemp,snowgrain,snowdz,snowheat,snowliq, &
780	& grndflux,gtemp,tot_bare_soil, &
781	& lambda_snow,cgrnd_snow,dgrnd_snow,frac_snow_veg,temp_sol_add, &
782	& mc_layh, mcl_layh, soilmoist, root_deficit)
783
784
785	!! 6. Compute surface variables (emissivity, albedo and roughness)
786	CALL condveg_main (kjit, kjpindex, index, rest_id, hist_id, hist2_id, &
787	lalo, neighbours, resolution, contfrac, veget, veget_max, frac_nobio, totfrac_nobio, &
788	zlev, snow, snow_age, snow_nobio, snow_nobio_age, &
789	drysoil_frac, height, snowdz, snowrho, tot_bare_soil, &
790	temp_air, pb, u, v, lai, &
791	emis, albedo, z0m, z0h, roughheight, &
792	frac_snow_veg, frac_snow_nobio)
793
794
795	!! 7. Compute soil thermodynamics
796	CALL thermosoil_main (kjit, kjpindex, &
797	index, indexgrnd, mcs, &
798	temp_sol_new, snow, soilcap, soilflx, &
799	shumdiag_perma, stempdiag, ftempdiag, ptnlev1, rest_id, hist_id, hist2_id, &
800	snowdz,snowrho,snowtemp,gtemp,pb,&
801	mc_layh, mcl_layh, soilmoist, njsc,frac_snow_veg,frac_snow_nobio,totfrac_nobio,temp_sol_add, &
802	lambda_snow, cgrnd_snow, dgrnd_snow)
803
804
805	!! 8. Compute river routing
806	IF ( river_routing .AND. nbp_glo .GT. 1) THEN
807	!! 8.1 River routing
808	CALL routing_wrapper_main (kjit, kjpindex, index, &
809	& lalo, neighbours, resolution, contfrac, totfrac_nobio, veget_max, floodout, runoff, &
810	& drainage, transpot, precip_rain, humrel, k_litt, flood_frac, flood_res, stempdiag, &
811	& ftempdiag, reinf_slope, returnflow, reinfiltration, irrigation, riverflow, coastalflow, rest_id, hist_id, hist2_id, &
812	& soiltile, root_deficit, irrigated_next, irrig_frac, fraction_aeirrig_sw)
813	ELSE
814	!! 8.2 No routing, set variables to zero
815	riverflow(:) = zero
816	coastalflow(:) = zero
817	returnflow(:) = zero
818	reinfiltration(:) = zero
819	irrigation(:) = zero
820	flood_frac(:) = zero
821	flood_res(:) = zero
822
823	CALL xios_orchidee_send_field("coastalflow",coastalflow/dt_sechiba)
824	CALL xios_orchidee_send_field("riverflow",riverflow/dt_sechiba)
825	ENDIF
826
827	!! 9. Compute slow processes (i.e. 'daily' and annual time step)
828	CALL slowproc_main (kjit, kjpij, kjpindex, &
829	index, indexveg, lalo, neighbours, resolution, contfrac, soiltile, fraclut, nwdFraclut, &
830	temp_air, temp_sol, stempdiag,shumdiagSAT,litterhumdiagSAT, &
831	vegstress, shumdiag, litterhumdiag, precip_rain, precip_snow, gpp, &
832	deadleaf_cover, &
833	assim_param, &
834	lai, frac_age, height, veget, frac_nobio, veget_max, totfrac_nobio, qsintmax, &
835	rest_id, hist_id, hist2_id, rest_id_stom, hist_id_stom, hist_id_stom_IPCC, &
836	co2_flux, fco2_lu, fco2_wh, fco2_ha, temp_growth, tot_bare_soil, &
837	irrigated_next, irrig_frac, reinf_slope, reinf_slope_soil)
838
839
840	!! 9.2 Compute global CO2 flux
841	netco2flux(:) = zero
842	DO jv = 2,nvm
843	netco2flux(:) = netco2flux(:) + co2_flux(:,jv)*(1-totfrac_nobio)
844	ENDDO
845
846	!! 10. Update the temperature (temp_sol) with newly computed values
847	CALL sechiba_end (kjpindex, temp_sol_new, temp_sol)
848
849
850	!! 11. Write internal variables to output fields
851	z0m_out(:) = z0m(:)
852	z0h_out(:) = z0h(:)
853	emis_out(:) = emis(:)
854	qsurf_out(:) = qsurf(:)
855	veget_out(:,:) = veget(:,:)
856	lai_out(:,:) = lai(:,:)
857	height_out(:,:) = height(:,:)
858
859	!! 12. Write global variables to history files
860	sum_treefrac(:) = zero
861	sum_grassfracC3(:) = zero
862	sum_grassfracC4(:) = zero
863	sum_cropfracC3(:) = zero
864	sum_cropfracC4(:) = zero
865	sum_treeFracNdlEvg(:) = zero
866	sum_treeFracBdlEvg(:) = zero
867	sum_treeFracNdlDcd(:) = zero
868	sum_treeFracBdlDcd(:) = zero
869
870	DO jv = 2, nvm
871	IF (is_tree(jv) .AND. natural(jv)) THEN
872	sum_treefrac(:) = sum_treefrac(:) + veget_max(:,jv)
873	ELSE IF ((.NOT. is_tree(jv)) .AND. natural(jv)) THEN
874	! Grass
875	IF (is_c4(jv)) THEN
876	sum_grassfracC4(:) = sum_grassfracC4(:) + veget_max(:,jv)
877	ELSE
878	sum_grassfracC3(:) = sum_grassfracC3(:) + veget_max(:,jv)
879	END IF
880	ELSE
881	! Crop and trees not natural
882	IF (is_c4(jv)) THEN
883	sum_cropfracC4(:) = sum_cropfracC4(:) + veget_max(:,jv)
884	ELSE
885	sum_cropfracC3(:) = sum_cropfracC3(:) + veget_max(:,jv)
886	END IF
887	ENDIF
888
889	IF (is_tree(jv)) THEN
890	IF (is_evergreen(jv)) THEN
891	IF (is_needleleaf(jv)) THEN
892	! Fraction for needleleaf evergreen trees (treeFracNdlEvg)
893	sum_treeFracNdlEvg(:) = sum_treeFracNdlEvg(:) + veget_max(:,jv)
894	ELSE
895	! Fraction for broadleaf evergreen trees (treeFracBdlEvg)
896	sum_treeFracBdlEvg(:) = sum_treeFracBdlEvg(:) + veget_max(:,jv)
897	END IF
898	ELSE IF (is_deciduous(jv)) THEN
899	IF (is_needleleaf(jv)) THEN
900	! Fraction for needleleaf deciduous trees (treeFracNdlDcd)
901	sum_treeFracNdlDcd(:) = sum_treeFracNdlDcd(:) + veget_max(:,jv)
902	ELSE
903	! Fraction for broadleafs deciduous trees (treeFracBdlDcd)
904	sum_treeFracBdlDcd(:) = sum_treeFracBdlDcd(:) + veget_max(:,jv)
905	END IF
906	END IF
907	END IF
908	ENDDO
909
910	histvar(:)=zero
911	DO jv = 2, nvm
912	IF (is_deciduous(jv)) THEN
913	histvar(:) = histvar(:) + veget_max(:,jv)100contfrac
914	ENDIF
915	ENDDO
916	CALL xios_orchidee_send_field("treeFracPrimDec",histvar)
917
918	histvar(:)=zero
919	DO jv = 2, nvm
920	IF (is_evergreen(jv)) THEN
921	histvar(:) = histvar(:) + veget_max(:,jv)100contfrac
922	ENDIF
923	ENDDO
924	CALL xios_orchidee_send_field("treeFracPrimEver",histvar)
925
926	histvar(:)=zero
927	DO jv = 2, nvm
928	IF ( .NOT.(is_c4(jv)) ) THEN
929	histvar(:) = histvar(:) + veget_max(:,jv)100contfrac
930	ENDIF
931	ENDDO
932	CALL xios_orchidee_send_field("c3PftFrac",histvar)
933
934	histvar(:)=zero
935	DO jv = 2, nvm
936	IF ( is_c4(jv) ) THEN
937	histvar(:) = histvar(:) + veget_max(:,jv)100contfrac
938	ENDIF
939	ENDDO
940	CALL xios_orchidee_send_field("c4PftFrac",histvar)
941
942	CALL xios_orchidee_send_field("temp_sol_new",temp_sol_new)
943	CALL xios_orchidee_send_field("fluxsens",fluxsens)
944	CALL xios_orchidee_send_field("fluxlat",fluxlat)
945
946
947	! Add XIOS default value where no snow
948	DO ji=1,kjpindex
949	IF (snow(ji) .GT. zero) THEN
950	snow_age_diag(ji) = snow_age(ji)
951	snow_nobio_age_diag(ji,:) = snow_nobio_age(ji,:)
952
953	snowage_glob(ji) = snow_age(ji)frac_snow_veg(ji)(1-totfrac_nobio(ji)) + &
954	SUM(snow_nobio_age(ji,:)frac_snow_nobio(ji,:)frac_nobio(ji,:))
955	IF (snowage_glob(ji) .NE. 0) snowage_glob(ji) = snowage_glob(ji) / &
956	(frac_snow_veg(ji)(1-totfrac_nobio(ji)) + SUM(frac_snow_nobio(ji,:)frac_nobio(ji,:)))
957	ELSE
958	snow_age_diag(ji) = xios_default_val
959	snow_nobio_age_diag(ji,:) = xios_default_val
960	snowage_glob(ji) = xios_default_val
961	END IF
962	END DO
963
964	CALL xios_orchidee_send_field("snow",snow)
965	CALL xios_orchidee_send_field("snowage",snow_age_diag)
966	CALL xios_orchidee_send_field("snownobio",snow_nobio)
967	CALL xios_orchidee_send_field("snownobioage",snow_nobio_age_diag)
968	CALL xios_orchidee_send_field("snowage_glob",snowage_glob)
969
970	CALL xios_orchidee_send_field("frac_snow", SUM(frac_snow_nobio,2)totfrac_nobio+frac_snow_veg(1-totfrac_nobio))
971	CALL xios_orchidee_send_field("frac_snow_veg", frac_snow_veg)
972	CALL xios_orchidee_send_field("frac_snow_nobio", frac_snow_nobio)
973	CALL xios_orchidee_send_field("reinf_slope",reinf_slope)
974	CALL xios_orchidee_send_field("njsc",REAL(njsc, r_std))
975	CALL xios_orchidee_send_field("vegetfrac",veget)
976	CALL xios_orchidee_send_field("maxvegetfrac",veget_max)
977	CALL xios_orchidee_send_field("irrigmap_dyn",irrigated_next)
978	CALL xios_orchidee_send_field("aei_sw",fraction_aeirrig_sw)
979	CALL xios_orchidee_send_field("nobiofrac",frac_nobio)
980	CALL xios_orchidee_send_field("soiltile",soiltile)
981	CALL xios_orchidee_send_field("rstruct",rstruct)
982	CALL xios_orchidee_send_field("gpp",gpp/dt_sechiba)
983	CALL xios_orchidee_send_field("gpp_ipcc2",SUM(gpp,dim=2)/dt_sechiba)
984
985	histvar(:)=zero
986	DO jv = 2, nvm
987	IF ( .NOT. is_tree(jv) .AND. natural(jv) ) THEN
988	histvar(:) = histvar(:) + gpp(:,jv)
989	ENDIF
990	ENDDO
991	CALL xios_orchidee_send_field("gppgrass",histvar/dt_sechiba)
992
993	histvar(:)=zero
994	DO jv = 2, nvm
995	IF ( (.NOT. is_tree(jv)) .AND. (.NOT. natural(jv)) ) THEN
996	histvar(:) = histvar(:) + gpp(:,jv)
997	ENDIF
998	ENDDO
999	CALL xios_orchidee_send_field("gppcrop",histvar/dt_sechiba)
1000
1001	histvar(:)=zero
1002	DO jv = 2, nvm
1003	IF ( is_tree(jv) ) THEN
1004	histvar(:) = histvar(:) + gpp(:,jv)
1005	ENDIF
1006	ENDDO
1007	CALL xios_orchidee_send_field("gpptree",histvar/dt_sechiba)
1008	CALL xios_orchidee_send_field("nee",co2_flux/1.e3/one_day)
1009	CALL xios_orchidee_send_field("drysoil_frac",drysoil_frac)
1010	CALL xios_orchidee_send_field("vevapflo",vevapflo/dt_sechiba)
1011	CALL xios_orchidee_send_field("k_litt",k_litt)
1012	CALL xios_orchidee_send_field("beta",vbeta)
1013	CALL xios_orchidee_send_field("vbeta1",vbeta1)
1014	CALL xios_orchidee_send_field("vbeta2",vbeta2)
1015	CALL xios_orchidee_send_field("vbeta3",vbeta3)
1016	CALL xios_orchidee_send_field("vbeta4",vbeta4)
1017	CALL xios_orchidee_send_field("vbeta5",vbeta5)
1018	CALL xios_orchidee_send_field("gsmean",gsmean)
1019	CALL xios_orchidee_send_field("cimean",cimean)
1020	CALL xios_orchidee_send_field("rveget",rveget)
1021
1022	histvar(:)=SUM(vevapwet(:,:),dim=2)
1023	CALL xios_orchidee_send_field("evspsblveg",histvar/dt_sechiba)
1024	histvar(:)= vevapnu(:)+vevapsno(:)
1025	CALL xios_orchidee_send_field("evspsblsoi",histvar/dt_sechiba)
1026	histvar(:)=SUM(transpir(:,:),dim=2)
1027	CALL xios_orchidee_send_field("tran",histvar/dt_sechiba)
1028
1029	! For CMIP6 data request: the following fractions are fractions of the total grid-cell,
1030	! which explains the multiplication by contfrac
1031	CALL xios_orchidee_send_field("treeFrac",sum_treefrac(:)100contfrac(:))
1032	CALL xios_orchidee_send_field("grassFracC3",sum_grassfracC3(:)100contfrac(:))
1033	CALL xios_orchidee_send_field("grassFracC4",sum_grassfracC4(:)100contfrac(:))
1034	CALL xios_orchidee_send_field("cropFracC3",sum_cropfracC3(:)100contfrac(:))
1035	CALL xios_orchidee_send_field("cropFracC4",sum_cropfracC4(:)100contfrac(:))
1036	CALL xios_orchidee_send_field("treeFracNdlEvg",sum_treeFracNdlEvg(:)100contfrac(:))
1037	CALL xios_orchidee_send_field("treeFracBdlEvg",sum_treeFracBdlEvg(:)100contfrac(:))
1038	CALL xios_orchidee_send_field("treeFracNdlDcd",sum_treeFracNdlDcd(:)100contfrac(:))
1039	CALL xios_orchidee_send_field("treeFracBdlDcd",sum_treeFracBdlDcd(:)100contfrac(:))
1040
1041	histvar(:)=veget_max(:,1)100contfrac(:)
1042	CALL xios_orchidee_send_field("baresoilFrac",histvar)
1043	histvar(:)=SUM(frac_nobio(:,1:nnobio),dim=2)100contfrac(:)
1044	CALL xios_orchidee_send_field("residualFrac",histvar)
1045
1046	! For CMIP6 data request: cnc = canopy cover fraction over land area
1047	histvar(:)=zero
1048	DO jv=2,nvm
1049	histvar(:) = histvar(:) + veget_max(:,jv)*100
1050	END DO
1051	CALL xios_orchidee_send_field("cnc",histvar)
1052
1053	CALL xios_orchidee_send_field("tsol_rad",tsol_rad-273.15)
1054	CALL xios_orchidee_send_field("qsurf",qsurf)
1055	CALL xios_orchidee_send_field("emis",emis)
1056	CALL xios_orchidee_send_field("z0m",z0m)
1057	CALL xios_orchidee_send_field("z0h",z0h)
1058	CALL xios_orchidee_send_field("roughheight",roughheight)
1059	CALL xios_orchidee_send_field("lai",lai)
1060	CALL xios_orchidee_send_field("u",u)
1061	CALL xios_orchidee_send_field("v",v)
1062	CALL xios_orchidee_send_field("zlev",zlev)
1063
1064	histvar(:)=zero
1065	DO ji = 1, kjpindex
1066	IF (SUM(veget_max(ji,:)) > zero) THEN
1067	DO jv=2,nvm
1068	histvar(ji) = histvar(ji) + veget_max(ji,jv)*lai(ji,jv)/SUM(veget_max(ji,:))
1069	END DO
1070	END IF
1071	END DO
1072	CALL xios_orchidee_send_field("LAImean",histvar)
1073	CALL xios_orchidee_send_field("vevapsno",vevapsno/dt_sechiba)
1074	CALL xios_orchidee_send_field("vevapp",vevapp/dt_sechiba)
1075	CALL xios_orchidee_send_field("vevapnu",vevapnu/dt_sechiba)
1076	CALL xios_orchidee_send_field("transpir",transpir*one_day/dt_sechiba)
1077	CALL xios_orchidee_send_field("transpot",transpot*one_day/dt_sechiba)
1078	CALL xios_orchidee_send_field("inter",vevapwet*one_day/dt_sechiba)
1079	histvar(:)=zero
1080	DO jv=1,nvm
1081	histvar(:) = histvar(:) + vevapwet(:,jv)
1082	ENDDO
1083	CALL xios_orchidee_send_field("ECanop",histvar/dt_sechiba)
1084	histvar(:)=zero
1085	DO jv=1,nvm
1086	histvar(:) = histvar(:) + transpir(:,jv)
1087	ENDDO
1088	CALL xios_orchidee_send_field("TVeg",histvar/dt_sechiba)
1089
1090
1091	!! Calculate diagnostic variables on Landuse tiles for LUMIP/CMIP6
1092
1093	! Calculate fraction of landuse tiles related to the whole grid cell
1094	DO jv=1,nlut
1095	histvar2(:,jv) = fraclut(:,jv) * contfrac(:)
1096	END DO
1097	CALL xios_orchidee_send_field("fraclut",histvar2)
1098
1099	CALL xios_orchidee_send_field("nwdFraclut",nwdFraclut(:,:))
1100
1101	! Calculate GPP on landuse tiles
1102	! val_exp is used as missing value where the values are not known i.e. where the tile is not represented
1103	! or for pasture (id_pst) or urban land (id_urb).
1104	gpplut(:,:)=0
1105	DO jv=1,nvm
1106	IF (natural(jv)) THEN
1107	gpplut(:,id_psl) = gpplut(:,id_psl) + gpp(:,jv)
1108	ELSE
1109	gpplut(:,id_crp) = gpplut(:,id_crp) + gpp(:,jv)
1110	ENDIF
1111	END DO
1112
1113	! Transform from gC/m2/s into kgC/m2/s
1114	WHERE (fraclut(:,id_psl)>min_sechiba)
1115	gpplut(:,id_psl) = gpplut(:,id_psl)/fraclut(:,id_psl)/1000
1116	ELSEWHERE
1117	gpplut(:,id_psl) = xios_default_val
1118	END WHERE
1119	WHERE (fraclut(:,id_crp)>min_sechiba)
1120	gpplut(:,id_crp) = gpplut(:,id_crp)/fraclut(:,id_crp)/1000
1121	ELSEWHERE
1122	gpplut(:,id_crp) = xios_default_val
1123	END WHERE
1124	gpplut(:,id_pst) = xios_default_val
1125	gpplut(:,id_urb) = xios_default_val
1126
1127	CALL xios_orchidee_send_field("gpplut",gpplut)
1128
1129
1130	IF ( .NOT. almaoutput ) THEN
1131	! Write history file in IPSL-format
1132	CALL histwrite_p(hist_id, 'beta', kjit, vbeta, kjpindex, index)
1133	CALL histwrite_p(hist_id, 'z0m', kjit, z0m, kjpindex, index)
1134	CALL histwrite_p(hist_id, 'z0h', kjit, z0h, kjpindex, index)
1135	CALL histwrite_p(hist_id, 'roughheight', kjit, roughheight, kjpindex, index)
1136	CALL histwrite_p(hist_id, 'vegetfrac', kjit, veget, kjpindex*nvm, indexveg)
1137	CALL histwrite_p(hist_id, 'maxvegetfrac', kjit, veget_max, kjpindex*nvm, indexveg)
1138	CALL histwrite_p(hist_id, 'nobiofrac', kjit, frac_nobio, kjpindex*nnobio, indexnobio)
1139	CALL histwrite_p(hist_id, 'lai', kjit, lai, kjpindex*nvm, indexveg)
1140	CALL histwrite_p(hist_id, 'subli', kjit, vevapsno, kjpindex, index)
1141	CALL histwrite_p(hist_id, 'evapnu', kjit, vevapnu, kjpindex, index)
1142	CALL histwrite_p(hist_id, 'transpir', kjit, transpir, kjpindex*nvm, indexveg)
1143	CALL histwrite_p(hist_id, 'inter', kjit, vevapwet, kjpindex*nvm, indexveg)
1144	CALL histwrite_p(hist_id, 'vbeta1', kjit, vbeta1, kjpindex, index)
1145	CALL histwrite_p(hist_id, 'vbeta2', kjit, vbeta2, kjpindex*nvm, indexveg)
1146	CALL histwrite_p(hist_id, 'vbeta3', kjit, vbeta3, kjpindex*nvm, indexveg)
1147	CALL histwrite_p(hist_id, 'vbeta4', kjit, vbeta4, kjpindex, index)
1148	CALL histwrite_p(hist_id, 'vbeta5', kjit, vbeta5, kjpindex, index)
1149	CALL histwrite_p(hist_id, 'drysoil_frac', kjit, drysoil_frac, kjpindex, index)
1150	CALL histwrite_p(hist_id, 'rveget', kjit, rveget, kjpindex*nvm, indexveg)
1151	CALL histwrite_p(hist_id, 'rstruct', kjit, rstruct, kjpindex*nvm, indexveg)
1152	CALL histwrite_p(hist_id, 'snow', kjit, snow, kjpindex, index)
1153	CALL histwrite_p(hist_id, 'snowage', kjit, snow_age, kjpindex, index)
1154	CALL histwrite_p(hist_id, 'snownobio', kjit, snow_nobio, kjpindex*nnobio, indexnobio)
1155	CALL histwrite_p(hist_id, 'snownobioage', kjit, snow_nobio_age, kjpindex*nnobio, indexnobio)
1156
1157	CALL histwrite_p(hist_id, 'grndflux', kjit, grndflux, kjpindex,index)
1158	CALL histwrite_p(hist_id, 'snowtemp',kjit,snowtemp,kjpindex*nsnow,indexsnow)
1159	CALL histwrite_p(hist_id, 'snowliq', kjit,snowliq,kjpindex*nsnow,indexsnow)
1160	CALL histwrite_p(hist_id, 'snowdz', kjit,snowdz,kjpindex*nsnow,indexsnow)
1161	CALL histwrite_p(hist_id, 'snowrho', kjit,snowrho,kjpindex*nsnow,indexsnow)
1162	CALL histwrite_p(hist_id, 'snowgrain',kjit,snowgrain,kjpindex*nsnow,indexsnow)
1163	CALL histwrite_p(hist_id, 'snowheat',kjit,snowheat,kjpindex*nsnow,indexsnow)
1164
1165	CALL histwrite_p(hist_id,'frac_snow_veg',kjit,frac_snow_veg,kjpindex,index)
1166	CALL histwrite_p(hist_id, 'frac_snow_nobio', kjit,frac_snow_nobio,kjpindex*nnobio, indexnobio)
1167	CALL histwrite_p(hist_id, 'pgflux',kjit,pgflux,kjpindex,index)
1168	CALL histwrite_p(hist_id, 'soiltile', kjit, soiltile, kjpindex*nstm, indexsoil)
1169
1170	CALL histwrite_p(hist_id, 'soilindex', kjit, REAL(njsc, r_std), kjpindex, index)
1171	CALL histwrite_p(hist_id, 'reinf_slope', kjit, reinf_slope, kjpindex, index)
1172	CALL histwrite_p(hist_id, 'k_litt', kjit, k_litt, kjpindex, index)
1173
1174	IF ( do_floodplains ) THEN
1175	CALL histwrite_p(hist_id, 'evapflo', kjit, vevapflo, kjpindex, index)
1176	CALL histwrite_p(hist_id, 'flood_frac', kjit, flood_frac, kjpindex, index)
1177	ENDIF
1178
1179	CALL histwrite_p(hist_id, 'gsmean', kjit, gsmean, kjpindex*nvm, indexveg)
1180	CALL histwrite_p(hist_id, 'gpp', kjit, gpp, kjpindex*nvm, indexveg)
1181	CALL histwrite_p(hist_id, 'cimean', kjit, cimean, kjpindex*nvm, indexveg)
1182
1183	IF ( ok_stomate ) THEN
1184	CALL histwrite_p(hist_id, 'nee', kjit, co2_flux/1.e3/one_day, kjpindex*nvm, indexveg)
1185	ENDIF
1186
1187	histvar(:)=SUM(vevapwet(:,:),dim=2)
1188	CALL histwrite_p(hist_id, 'evspsblveg', kjit, histvar, kjpindex, index)
1189
1190	histvar(:)= vevapnu(:)+vevapsno(:)
1191	CALL histwrite_p(hist_id, 'evspsblsoi', kjit, histvar, kjpindex, index)
1192
1193	histvar(:)=SUM(transpir(:,:),dim=2)
1194	CALL histwrite_p(hist_id, 'tran', kjit, histvar, kjpindex, index)
1195
1196	histvar(:)= sum_treefrac(:)100contfrac(:)
1197	CALL histwrite_p(hist_id, 'treeFrac', kjit, histvar, kjpindex, index)
1198
1199	histvar(:)= (sum_grassfracC3(:)+sum_grassfracC4(:))100contfrac(:)
1200	CALL histwrite_p(hist_id, 'grassFrac', kjit, histvar, kjpindex, index)
1201
1202	histvar(:)= (sum_cropfracC3(:)+sum_cropfracC4(:))100contfrac(:)
1203	CALL histwrite_p(hist_id, 'cropFrac', kjit, histvar, kjpindex, index)
1204
1205	histvar(:)=veget_max(:,1)100contfrac(:)
1206	CALL histwrite_p(hist_id, 'baresoilFrac', kjit, histvar, kjpindex, index)
1207
1208	histvar(:)=SUM(frac_nobio(:,1:nnobio),dim=2)100contfrac(:)
1209	CALL histwrite_p(hist_id, 'residualFrac', kjit, histvar, kjpindex, index)
1210	ELSE
1211	! Write history file in ALMA format
1212	CALL histwrite_p(hist_id, 'vegetfrac', kjit, veget, kjpindex*nvm, indexveg)
1213	CALL histwrite_p(hist_id, 'maxvegetfrac', kjit, veget_max, kjpindex*nvm, indexveg)
1214	CALL histwrite_p(hist_id, 'nobiofrac', kjit, frac_nobio, kjpindex*nnobio, indexnobio)
1215	CALL histwrite_p(hist_id, 'lai', kjit, lai, kjpindex*nvm, indexveg)
1216	CALL histwrite_p(hist_id, 'ESoil', kjit, vevapnu, kjpindex, index)
1217	CALL histwrite_p(hist_id, 'EWater', kjit, vevapflo, kjpindex, index)
1218	CALL histwrite_p(hist_id, 'SWE', kjit, snow, kjpindex, index)
1219	histvar(:)=zero
1220	DO jv=1,nvm
1221	histvar(:) = histvar(:) + transpir(:,jv)
1222	ENDDO
1223	CALL histwrite_p(hist_id, 'TVeg', kjit, histvar, kjpindex, index)
1224	histvar(:)=zero
1225	DO jv=1,nvm
1226	histvar(:) = histvar(:) + vevapwet(:,jv)
1227	ENDDO
1228	CALL histwrite_p(hist_id, 'ECanop', kjit, histvar, kjpindex, index)
1229	CALL histwrite_p(hist_id, 'SnowFrac', kjit, vbeta1, kjpindex, index)
1230	!
1231	CALL histwrite_p(hist_id, 'Z0m', kjit, z0m, kjpindex, index)
1232	CALL histwrite_p(hist_id, 'Z0h', kjit, z0h, kjpindex, index)
1233	CALL histwrite_p(hist_id, 'EffectHeight', kjit, roughheight, kjpindex, index)
1234	!
1235	IF ( do_floodplains ) THEN
1236	CALL histwrite_p(hist_id, 'Qflood', kjit, vevapflo, kjpindex, index)
1237	CALL histwrite_p(hist_id, 'FloodFrac', kjit, flood_frac, kjpindex, index)
1238	ENDIF
1239
1240	CALL histwrite_p(hist_id, 'gsmean', kjit, gsmean, kjpindex*nvm, indexveg)
1241	CALL histwrite_p(hist_id, 'cimean', kjit, cimean, kjpindex*nvm, indexveg)
1242	CALL histwrite_p(hist_id, 'GPP', kjit, gpp, kjpindex*nvm, indexveg)
1243
1244	IF ( ok_stomate ) THEN
1245	CALL histwrite_p(hist_id, 'NEE', kjit, co2_flux, kjpindex*nvm, indexveg)
1246	ENDIF
1247	ENDIF ! almaoutput
1248
1249	!! 13. Write additional output file with higher frequency
1250	IF ( hist2_id > 0 ) THEN
1251	IF ( .NOT. almaoutput ) THEN
1252	! Write history file in IPSL-format
1253	CALL histwrite_p(hist2_id, 'tsol_rad', kjit, tsol_rad, kjpindex, index)
1254	CALL histwrite_p(hist2_id, 'qsurf', kjit, qsurf, kjpindex, index)
1255	CALL histwrite_p(hist2_id, 'albedo', kjit, albedo, kjpindex*2, indexalb)
1256	CALL histwrite_p(hist2_id, 'emis', kjit, emis, kjpindex, index)
1257	CALL histwrite_p(hist2_id, 'beta', kjit, vbeta, kjpindex, index)
1258	CALL histwrite_p(hist2_id, 'z0m', kjit, z0m, kjpindex, index)
1259	CALL histwrite_p(hist2_id, 'z0h', kjit, z0h, kjpindex, index)
1260	CALL histwrite_p(hist2_id, 'roughheight', kjit, roughheight, kjpindex, index)
1261	CALL histwrite_p(hist2_id, 'vegetfrac', kjit, veget, kjpindex*nvm, indexveg)
1262	CALL histwrite_p(hist2_id, 'maxvegetfrac', kjit, veget_max, kjpindex*nvm, indexveg)
1263	CALL histwrite_p(hist2_id, 'nobiofrac', kjit, frac_nobio, kjpindex*nnobio, indexnobio)
1264	CALL histwrite_p(hist2_id, 'lai', kjit, lai, kjpindex*nvm, indexveg)
1265	CALL histwrite_p(hist2_id, 'subli', kjit, vevapsno, kjpindex, index)
1266	IF ( do_floodplains ) THEN
1267	CALL histwrite_p(hist2_id, 'vevapflo', kjit, vevapflo, kjpindex, index)
1268	CALL histwrite_p(hist2_id, 'flood_frac', kjit, flood_frac, kjpindex, index)
1269	ENDIF
1270	CALL histwrite_p(hist2_id, 'vevapnu', kjit, vevapnu, kjpindex, index)
1271	CALL histwrite_p(hist2_id, 'transpir', kjit, transpir, kjpindex*nvm, indexveg)
1272	CALL histwrite_p(hist2_id, 'inter', kjit, vevapwet, kjpindex*nvm, indexveg)
1273	CALL histwrite_p(hist2_id, 'vbeta1', kjit, vbeta1, kjpindex, index)
1274	CALL histwrite_p(hist2_id, 'vbeta2', kjit, vbeta2, kjpindex*nvm, indexveg)
1275	CALL histwrite_p(hist2_id, 'vbeta3', kjit, vbeta3, kjpindex*nvm, indexveg)
1276	CALL histwrite_p(hist2_id, 'vbeta4', kjit, vbeta4, kjpindex, index)
1277	CALL histwrite_p(hist2_id, 'vbeta5', kjit, vbeta5, kjpindex, index)
1278	CALL histwrite_p(hist2_id, 'drysoil_frac', kjit, drysoil_frac, kjpindex, index)
1279	CALL histwrite_p(hist2_id, 'rveget', kjit, rveget, kjpindex*nvm, indexveg)
1280	CALL histwrite_p(hist2_id, 'rstruct', kjit, rstruct, kjpindex*nvm, indexveg)
1281	CALL histwrite_p(hist2_id, 'snow', kjit, snow, kjpindex, index)
1282	CALL histwrite_p(hist2_id, 'snowage', kjit, snow_age, kjpindex, index)
1283	CALL histwrite_p(hist2_id, 'snownobio', kjit, snow_nobio, kjpindex*nnobio, indexnobio)
1284	CALL histwrite_p(hist2_id, 'snownobioage', kjit, snow_nobio_age, kjpindex*nnobio, indexnobio)
1285	CALL histwrite_p(hist2_id, 'soilindex', kjit, REAL(njsc, r_std), kjpindex, index)
1286	CALL histwrite_p(hist2_id, 'reinf_slope', kjit, reinf_slope, kjpindex, index)
1287
1288	CALL histwrite_p(hist2_id, 'gsmean', kjit, gsmean, kjpindex*nvm, indexveg)
1289	CALL histwrite_p(hist2_id, 'gpp', kjit, gpp, kjpindex*nvm, indexveg)
1290	CALL histwrite_p(hist2_id, 'cimean', kjit, cimean, kjpindex*nvm, indexveg)
1291
1292	IF ( ok_stomate ) THEN
1293	CALL histwrite_p(hist2_id, 'nee', kjit, co2_flux/1.e3/one_day, kjpindex*nvm, indexveg)
1294	ENDIF
1295	ELSE
1296	! Write history file in ALMA format
1297	CALL histwrite_p(hist2_id, 'vegetfrac', kjit, veget, kjpindex*nvm, indexveg)
1298	CALL histwrite_p(hist2_id, 'maxvegetfrac', kjit, veget_max, kjpindex*nvm, indexveg)
1299	CALL histwrite_p(hist2_id, 'nobiofrac', kjit, frac_nobio, kjpindex*nnobio, indexnobio)
1300	CALL histwrite_p(hist2_id, 'ESoil', kjit, vevapnu, kjpindex, index)
1301	IF ( do_floodplains ) THEN
1302	CALL histwrite_p(hist2_id, 'EWater', kjit, vevapflo, kjpindex, index)
1303	CALL histwrite_p(hist2_id, 'FloodFrac', kjit, flood_frac, kjpindex, index)
1304	ENDIF
1305	CALL histwrite_p(hist2_id, 'SWE', kjit, snow, kjpindex, index)
1306	histvar(:)=zero
1307	DO jv=1,nvm
1308	histvar(:) = histvar(:) + transpir(:,jv)
1309	ENDDO
1310	CALL histwrite_p(hist2_id, 'TVeg', kjit, histvar, kjpindex, index)
1311	histvar(:)=zero
1312	DO jv=1,nvm
1313	histvar(:) = histvar(:) + vevapwet(:,jv)
1314	ENDDO
1315	CALL histwrite_p(hist2_id, 'ECanop', kjit, histvar, kjpindex, index)
1316	CALL histwrite_p(hist2_id, 'SnowFrac', kjit, vbeta1, kjpindex, index)
1317	CALL histwrite_p(hist2_id, 'GPP', kjit, gpp, kjpindex*nvm, indexveg)
1318
1319	IF ( ok_stomate ) THEN
1320	CALL histwrite_p(hist2_id, 'NEE', kjit, co2_flux, kjpindex*nvm, indexveg)
1321	ENDIF
1322	ENDIF ! almaoutput
1323	ENDIF ! hist2_id
1324
1325
1326	!! Change the vegetation fractions if a new map was read in slowproc. This is done
1327	!! after lcchange has been done in stomatelpj
1328	IF (done_stomate_lcchange) THEN
1329	CALL slowproc_change_frac(kjpindex, lai, &
1330	veget_max, veget, frac_nobio, totfrac_nobio, tot_bare_soil, soiltile, fraclut, nwdFraclut)
1331	done_stomate_lcchange=.FALSE.
1332	END IF
1333
1334	!! 14. If it is the last time step, write restart files
1335	IF (ldrestart_write) THEN
1336	CALL sechiba_finalize( &
1337	kjit, kjpij, kjpindex, index, rest_id, &
1338	tq_cdrag, vevapp, fluxsens, fluxlat, tsol_rad)
1339	END IF
1340
1341	END SUBROUTINE sechiba_main
1342
1343
1344	!! =============================================================================================================================
1345	!! SUBROUTINE: sechiba_finalize
1346	!!
1347	!>\BRIEF Finalize all modules by calling their "_finalize" subroutines.
1348	!!
1349	!! DESCRIPTION: Finalize all modules by calling their "_finalize" subroutines. These subroutines will write variables to
1350	!! restart file.
1351	!!
1352	!! \n
1353	!_ ==============================================================================================================================
1354
1355	SUBROUTINE sechiba_finalize( &
1356	kjit, kjpij, kjpindex, index, rest_id, &
1357	tq_cdrag, vevapp, fluxsens, fluxlat, tsol_rad)
1358
1359	!! 0.1 Input variables
1360	INTEGER(i_std), INTENT(in) :: kjit !! Time step number (unitless)
1361	INTEGER(i_std), INTENT(in) :: kjpij !! Total size of the un-compressed grid
1362	!! (unitless)
1363	INTEGER(i_std), INTENT(in) :: kjpindex !! Domain size - terrestrial pixels only
1364	!! (unitless)
1365	INTEGER(i_std),INTENT (in) :: rest_id !! _Restart_ file identifier (unitless)
1366	INTEGER(i_std),DIMENSION (kjpindex), INTENT (in) :: index !! Indices of the pixels on the map.
1367	!! Sechiba uses a reduced grid excluding oceans
1368	!! ::index contains the indices of the
1369	!! terrestrial pixels only! (unitless)
1370	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: tsol_rad !! Radiative surface temperature
1371	!! @tex $(W m^{-2})$ @endtex
1372	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: vevapp !! Total of evaporation
1373	!! @tex $(kg m^{-2} days^{-1})$ @endtex
1374	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: fluxsens !! Sensible heat flux
1375	!! @tex $(W m^{-2})$ @endtex
1376	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: fluxlat !! Latent heat flux
1377	!! @tex $(W m^{-2})$ @endtex
1378	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: tq_cdrag !! Surface drag coefficient (-)
1379
1380	!! 0.2 Local variables
1381	INTEGER(i_std) :: ji, jv !! Index (unitless)
1382	REAL(r_std), DIMENSION(kjpindex) :: histvar !! Computations for history files (unitless)
1383	CHARACTER(LEN=80) :: var_name !! To store variables names for I/O (unitless)
1384
1385
1386	!! Write restart file for the next simulation from SECHIBA and other modules
1387
1388	IF (printlev_loc>=3) WRITE (numout,*) 'Start sechiba_finalize for writing restart files'
1389
1390	!! 1. Call diffuco_finalize to write restart files
1391	CALL diffuco_finalize (kjit, kjpindex, rest_id, rstruct )
1392
1393	!! 2. Call energy budget to write restart files
1394	CALL enerbil_finalize (kjit, kjpindex, rest_id, &
1395	evapot, evapot_corr, temp_sol, tsol_rad, &
1396	qsurf, fluxsens, fluxlat, vevapp )
1397
1398	!! 3. Call hydrology to write restart files
1399	CALL hydrol_finalize( kjit, kjpindex, rest_id, vegstress, &
1400	qsintveg, humrel, snow, snow_age, snow_nobio, &
1401	snow_nobio_age, snowrho, snowtemp, snowdz, &
1402	snowheat, snowgrain, &
1403	drysoil_frac, evap_bare_lim, evap_bare_lim_ns)
1404
1405	!! 4. Call condveg to write surface variables to restart files
1406	CALL condveg_finalize (kjit, kjpindex, rest_id, z0m, z0h, roughheight)
1407
1408	!! 5. Call soil thermodynamic to write restart files
1409	CALL thermosoil_finalize (kjit, kjpindex, rest_id, gtemp, &
1410	soilcap, soilflx, lambda_snow, cgrnd_snow, dgrnd_snow)
1411
1412
1413	!! 6. Add river routing to restart files
1414	IF ( river_routing .AND. nbp_glo .GT. 1) THEN
1415	!! 6.1 Call river routing to write restart files
1416	CALL routing_wrapper_finalize( kjit, kjpindex, rest_id, flood_frac, flood_res )
1417	ELSE
1418	!! 6.2 No routing, set variables to zero
1419	reinfiltration(:) = zero
1420	returnflow(:) = zero
1421	irrigation(:) = zero
1422	flood_frac(:) = zero
1423	flood_res(:) = zero
1424	ENDIF
1425
1426	!! 7. Call slowproc_main to add 'daily' and annual variables to restart file
1427	CALL slowproc_finalize (kjit, kjpindex, rest_id, index, &
1428	njsc, lai, height, veget, &
1429	frac_nobio, veget_max, reinf_slope, &
1430	ks, nvan, avan, mcr, &
1431	mcs, mcfc, mcw, &
1432	assim_param, frac_age, fraction_aeirrig_sw)
1433
1434	IF (printlev_loc>=3) WRITE (numout,*) 'sechiba_finalize done'
1435
1436	END SUBROUTINE sechiba_finalize
1437
1438
1439	!! ==============================================================================================================================\n
1440	!! SUBROUTINE : sechiba_init
1441	!!
1442	!>\BRIEF Dynamic allocation of the variables, the dimensions of the
1443	!! variables are determined by user-specified settings.
1444	!!
1445	!! DESCRIPTION : The domain size (:: kjpindex) is used to allocate the correct
1446	!! dimensions to all variables in sechiba. Depending on the variable, its
1447	!! dimensions are also determined by the number of PFT's (::nvm), number of
1448	!! soil types (::nstm), number of non-vegetative surface types (::nnobio),
1449	!! number of soil levels (::ngrnd), number of soil layers in the hydrological
1450	!! model (i.e. cwrr) (::nslm). Values for these variables are set in
1451	!! constantes_soil.f90 and constantes_veg.f90.\n
1452	!!
1453	!! Memory is allocated for all Sechiba variables and new indexing tables
1454	!! are build making use of both (::kjpij) and (::kjpindex). New indexing tables
1455	!! are needed because a single pixel can contain several PFTs, soil types, etc.
1456	!! The new indexing tables have separate indices for the different
1457	!! PFTs, soil types, etc.\n
1458	!!
1459	!! RECENT CHANGE(S): None
1460	!!
1461	!! MAIN OUTPUT VARIABLE(S): Strictly speaking the subroutine has no output
1462	!! variables. However, the routine allocates memory and builds new indexing
1463	!! variables for later use.
1464	!!
1465	!! REFERENCE(S) : None
1466	!!
1467	!! FLOWCHART : None
1468	!! \n
1469	!_ ================================================================================================================================
1470
1471	SUBROUTINE sechiba_init (kjit, kjpij, kjpindex, index, rest_id, lalo)
1472
1473	!! 0.1 Input variables
1474
1475	INTEGER(i_std), INTENT (in) :: kjit !! Time step number (unitless)
1476	INTEGER(i_std), INTENT (in) :: kjpij !! Total size of the un-compressed grid (unitless)
1477	INTEGER(i_std), INTENT (in) :: kjpindex !! Domain size - terrestrial pixels only (unitless)
1478	INTEGER(i_std), INTENT (in) :: rest_id !! _Restart_ file identifier (unitless)
1479	INTEGER(i_std),DIMENSION (kjpindex), INTENT (in) :: index !! Indeces of the points on the map (unitless)
1480	REAL(r_std),DIMENSION (kjpindex,2), INTENT (in) :: lalo !! Geographical coordinates (latitude,longitude)
1481	!! for pixels (degrees)
1482	!! 0.2 Output variables
1483
1484	!! 0.3 Modified variables
1485
1486	!! 0.4 Local variables
1487
1488	INTEGER(i_std) :: ier !! Check errors in memory allocation (unitless)
1489	INTEGER(i_std) :: ji, jv !! Indeces (unitless)
1490	!_ ==============================================================================================================================
1491
1492	!! 1. Initialize variables
1493
1494	! Dynamic allocation with user-specified dimensions on first call
1495	IF (l_first_sechiba) THEN
1496	l_first_sechiba=.FALSE.
1497	ELSE
1498	CALL ipslerr_p(3,'sechiba_init',' l_first_sechiba false . we stop ','','')
1499	ENDIF
1500
1501	!! Initialize local printlev
1502	printlev_loc=get_printlev('sechiba')
1503
1504	! Print usefull information necessary for identifying a problem pixel.
1505	! It is good to leave this in here. It is only written out once,
1506	IF (printlev>=1) THEN
1507	DO ji=1,kjpindex
1508	WRITE(numout,'(A,I6,10F20.10)') 'pixel number to lat/lon: ', ji, lalo(ji,1:2)
1509	END DO
1510	END IF
1511
1512
1513	!! 1.1 Initialize 3D vegetation indexation table
1514	ALLOCATE (indexveg(kjpindex*nvm),stat=ier)
1515	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexveg','','')
1516
1517	ALLOCATE (indexlai(kjpindex*(nlai+1)),stat=ier)
1518	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexlai','','')
1519
1520	ALLOCATE (indexsoil(kjpindex*nstm),stat=ier)
1521	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexsoil','','')
1522
1523	ALLOCATE (indexnobio(kjpindex*nnobio),stat=ier)
1524	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexnobio','','')
1525
1526	ALLOCATE (indexgrnd(kjpindex*ngrnd),stat=ier)
1527	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexgrnd','','')
1528
1529	ALLOCATE (indexsnow(kjpindex*nsnow),stat=ier)
1530	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexsnow','','')
1531
1532	ALLOCATE (indexlayer(kjpindex*nslm),stat=ier)
1533	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexlayer','','')
1534
1535	ALLOCATE (indexnslm(kjpindex*nslm),stat=ier)
1536	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexnslm','','')
1537
1538	ALLOCATE (indexalb(kjpindex*2),stat=ier)
1539	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for indexalb','','')
1540
1541	!! 1.2 Initialize 1D array allocation with restartable value
1542	ALLOCATE (flood_res(kjpindex),stat=ier)
1543	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for flood_res','','')
1544	flood_res(:) = undef_sechiba
1545
1546	ALLOCATE (flood_frac(kjpindex),stat=ier)
1547	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for kjpindex','','')
1548	flood_frac(:) = undef_sechiba
1549
1550	ALLOCATE (snow(kjpindex),stat=ier)
1551	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snow','','')
1552	snow(:) = undef_sechiba
1553
1554	ALLOCATE (snow_age(kjpindex),stat=ier)
1555	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snow_age','','')
1556	snow_age(:) = undef_sechiba
1557
1558	ALLOCATE (drysoil_frac(kjpindex),stat=ier)
1559	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for drysoil_frac','','')
1560
1561	ALLOCATE (evap_bare_lim(kjpindex),stat=ier)
1562	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for evap_bare_lim','','')
1563
1564	ALLOCATE (evap_bare_lim_ns(kjpindex,nstm),stat=ier)
1565	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for evap_bare_lim_ns','','')
1566
1567	ALLOCATE (evapot(kjpindex),stat=ier)
1568	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for evapot','','')
1569	evapot(:) = undef_sechiba
1570
1571	ALLOCATE (evapot_corr(kjpindex),stat=ier)
1572	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for evapot_corr','','')
1573
1574	ALLOCATE (humrel(kjpindex,nvm),stat=ier)
1575	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for humrel','','')
1576	humrel(:,:) = undef_sechiba
1577
1578	ALLOCATE (vegstress(kjpindex,nvm),stat=ier)
1579	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vegstress','','')
1580	vegstress(:,:) = undef_sechiba
1581
1582	ALLOCATE (njsc(kjpindex),stat=ier)
1583	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for njsc','','')
1584	njsc(:)= undef_int
1585
1586	ALLOCATE (soiltile(kjpindex,nstm),stat=ier)
1587	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for soiltile','','')
1588
1589	ALLOCATE (fraclut(kjpindex,nlut),stat=ier)
1590	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for fraclut','','')
1591
1592	ALLOCATE (nwdFraclut(kjpindex,nlut),stat=ier)
1593	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for nwdFraclut','','')
1594
1595	ALLOCATE (reinf_slope(kjpindex),stat=ier)
1596	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for reinf_slope','','')
1597
1598	ALLOCATE (reinf_slope_soil(kjpindex, nstm),stat=ier)
1599	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for reinf_slope_soil','','') !
1600
1601	!salma: adding soil params
1602	ALLOCATE (ks(kjpindex),stat=ier)
1603	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for ks','','')
1604
1605	ALLOCATE (nvan(kjpindex),stat=ier)
1606	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for nvan ','','')
1607
1608	ALLOCATE (avan(kjpindex),stat=ier)
1609	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for avan','','')
1610
1611	ALLOCATE (mcr(kjpindex),stat=ier)
1612	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for mcr','','')
1613
1614	ALLOCATE (mcs(kjpindex),stat=ier)
1615	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for mcs','','')
1616
1617	ALLOCATE (mcfc(kjpindex),stat=ier)
1618	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for mcfc','','')
1619
1620	ALLOCATE (mcw(kjpindex),stat=ier)
1621	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for mcw','','')
1622	!end salma: adding soil params
1623
1624
1625
1626
1627	ALLOCATE (vbeta1(kjpindex),stat=ier)
1628	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vbeta1','','')
1629
1630	ALLOCATE (vbeta4(kjpindex),stat=ier)
1631	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vbeta4','','')
1632
1633	ALLOCATE (vbeta5(kjpindex),stat=ier)
1634	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vbeta5','','')
1635
1636	ALLOCATE (soilcap(kjpindex),stat=ier)
1637	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for soilcap','','')
1638
1639	ALLOCATE (soilflx(kjpindex),stat=ier)
1640	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for soilflx','','')
1641
1642	ALLOCATE (temp_sol(kjpindex),stat=ier)
1643	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for temp_sol','','')
1644	temp_sol(:) = undef_sechiba
1645
1646	ALLOCATE (qsurf(kjpindex),stat=ier)
1647	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for qsurf','','')
1648	qsurf(:) = undef_sechiba
1649
1650	!! 1.3 Initialize 2D array allocation with restartable value
1651	ALLOCATE (qsintveg(kjpindex,nvm),stat=ier)
1652	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for qsintveg','','')
1653	qsintveg(:,:) = undef_sechiba
1654
1655	ALLOCATE (vbeta2(kjpindex,nvm),stat=ier)
1656	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vbeta2','','')
1657
1658	ALLOCATE (vbeta3(kjpindex,nvm),stat=ier)
1659	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vbeta3','','')
1660
1661	ALLOCATE (vbeta3pot(kjpindex,nvm),stat=ier)
1662	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vbeta3pot','','')
1663
1664	ALLOCATE (gsmean(kjpindex,nvm),stat=ier)
1665	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for gsmean','','')
1666
1667	ALLOCATE (cimean(kjpindex,nvm),stat=ier)
1668	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for cimean','','')
1669
1670	ALLOCATE (gpp(kjpindex,nvm),stat=ier)
1671	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for gpp','','')
1672	gpp(:,:) = undef_sechiba
1673
1674
1675	ALLOCATE (temp_growth(kjpindex),stat=ier)
1676	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for temp_growth','','')
1677	temp_growth(:) = undef_sechiba
1678
1679	ALLOCATE (veget(kjpindex,nvm),stat=ier)
1680	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for veget','','')
1681	veget(:,:)=undef_sechiba
1682
1683	ALLOCATE (veget_max(kjpindex,nvm),stat=ier)
1684	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for veget_max','','')
1685
1686	ALLOCATE (tot_bare_soil(kjpindex),stat=ier)
1687	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for tot_bare_soil','','')
1688
1689	ALLOCATE (lai(kjpindex,nvm),stat=ier)
1690	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for lai','','')
1691	lai(:,:)=undef_sechiba
1692
1693	ALLOCATE (frac_age(kjpindex,nvm,nleafages),stat=ier)
1694	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for frac_age','','')
1695	frac_age(:,:,:)=undef_sechiba
1696
1697	ALLOCATE (height(kjpindex,nvm),stat=ier)
1698	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for height','','')
1699	height(:,:)=undef_sechiba
1700
1701	ALLOCATE (frac_nobio(kjpindex,nnobio),stat=ier)
1702	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for frac_nobio','','')
1703	frac_nobio(:,:) = undef_sechiba
1704
1705	ALLOCATE (snow_nobio(kjpindex,nnobio),stat=ier)
1706	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snow_nobio','','')
1707	snow_nobio(:,:) = undef_sechiba
1708
1709	ALLOCATE (snow_nobio_age(kjpindex,nnobio),stat=ier)
1710	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snow_nobio_age','','')
1711	snow_nobio_age(:,:) = undef_sechiba
1712
1713	ALLOCATE (assim_param(kjpindex,nvm,npco2),stat=ier)
1714	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for assim_param','','')
1715
1716	!! 1.4 Initialize 1D array allocation
1717	ALLOCATE (vevapflo(kjpindex),stat=ier)
1718	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vevapflo','','')
1719	vevapflo(:)=zero
1720
1721	ALLOCATE (vevapsno(kjpindex),stat=ier)
1722	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vevapsno','','')
1723
1724	ALLOCATE (vevapnu(kjpindex),stat=ier)
1725	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vevapnu','','')
1726
1727	ALLOCATE (totfrac_nobio(kjpindex),stat=ier)
1728	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for totfrac_nobio','','')
1729
1730	ALLOCATE (floodout(kjpindex),stat=ier)
1731	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for floodout','','')
1732
1733	ALLOCATE (runoff(kjpindex),stat=ier)
1734	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for runoff','','')
1735
1736	ALLOCATE (drainage(kjpindex),stat=ier)
1737	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for drainage','','')
1738
1739	ALLOCATE (returnflow(kjpindex),stat=ier)
1740	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for returnflow','','')
1741	returnflow(:) = zero
1742
1743	ALLOCATE (reinfiltration(kjpindex),stat=ier)
1744	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for reinfiltration','','')
1745	reinfiltration(:) = zero
1746
1747	ALLOCATE (irrigation(kjpindex),stat=ier)
1748	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for irrigation','','')
1749	irrigation(:) = zero
1750
1751	ALLOCATE (z0h(kjpindex),stat=ier)
1752	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for z0h','','')
1753
1754	ALLOCATE (z0m(kjpindex),stat=ier)
1755	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for z0m','','')
1756
1757	ALLOCATE (roughheight(kjpindex),stat=ier)
1758	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for roughheight','','')
1759
1760	ALLOCATE (emis(kjpindex),stat=ier)
1761	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for emis','','')
1762
1763	ALLOCATE (tot_melt(kjpindex),stat=ier)
1764	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for tot_melt','','')
1765
1766	ALLOCATE (vbeta(kjpindex),stat=ier)
1767	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vbeta','','')
1768
1769	ALLOCATE (rau(kjpindex),stat=ier)
1770	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for rau','','')
1771
1772	ALLOCATE (deadleaf_cover(kjpindex),stat=ier)
1773	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for deadleaf_cover','','')
1774
1775	ALLOCATE (stempdiag(kjpindex, nslm),stat=ier)
1776	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for stempdiag','','')
1777
1778	ALLOCATE (ftempdiag(kjpindex, ngrnd),stat=ier)
1779	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for ftempdiag','','')
1780
1781	ALLOCATE (co2_flux(kjpindex,nvm),stat=ier)
1782	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for co2_flux','','')
1783	co2_flux(:,:)=zero
1784
1785	ALLOCATE (shumdiag(kjpindex,nslm),stat=ier)
1786	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for shumdiag','','')
1787
1788	ALLOCATE (shumdiagSAT(kjpindex,nslm),stat=ier)
1789	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for shumdiagSAT','','')
1790
1791	ALLOCATE (shumdiag_perma(kjpindex,nslm),stat=ier)
1792	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for shumdiag_perma','','')
1793
1794	ALLOCATE (litterhumdiag(kjpindex),stat=ier)
1795	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for litterhumdiag','','')
1796
1797	ALLOCATE (litterhumdiagSAT(kjpindex),stat=ier)
1798	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for litterhumdiagSAT','','')
1799
1800	ALLOCATE (ptnlev1(kjpindex),stat=ier)
1801	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for ptnlev1','','')
1802
1803	ALLOCATE (k_litt(kjpindex),stat=ier)
1804	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for k_litt','','')
1805
1806	!! 1.5 Initialize 2D array allocation
1807	ALLOCATE (vevapwet(kjpindex,nvm),stat=ier)
1808	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for vevapwet','','')
1809	vevapwet(:,:)=undef_sechiba
1810
1811	ALLOCATE (transpir(kjpindex,nvm),stat=ier)
1812	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for transpir','','')
1813
1814	ALLOCATE (transpot(kjpindex,nvm),stat=ier)
1815	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for transpot','','')
1816
1817	ALLOCATE (qsintmax(kjpindex,nvm),stat=ier)
1818	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for qsintmax','','')
1819
1820	ALLOCATE (rveget(kjpindex,nvm),stat=ier)
1821	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for rveget','','')
1822
1823	ALLOCATE (rstruct(kjpindex,nvm),stat=ier)
1824	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for rstruct','','')
1825
1826	ALLOCATE (pgflux(kjpindex),stat=ier)
1827	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for pgflux','','')
1828	pgflux(:)= 0.0
1829
1830	ALLOCATE (cgrnd_snow(kjpindex,nsnow),stat=ier)
1831	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for cgrnd_snow','','')
1832	cgrnd_snow(:,:) = 0
1833
1834	ALLOCATE (dgrnd_snow(kjpindex,nsnow),stat=ier)
1835	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for dgrnd_snow','','')
1836	dgrnd_snow(:,:) = 0
1837
1838	ALLOCATE (lambda_snow(kjpindex),stat=ier)
1839	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for lambda_snow','','')
1840	lambda_snow(:) = 0
1841
1842	ALLOCATE (temp_sol_add(kjpindex),stat=ier)
1843	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for temp_sol_add','','')
1844
1845	ALLOCATE (gtemp(kjpindex),stat=ier)
1846	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for gtemp','','')
1847
1848	ALLOCATE (frac_snow_veg(kjpindex),stat=ier)
1849	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for frac_snow_veg','','')
1850
1851	ALLOCATE (frac_snow_nobio(kjpindex,nnobio),stat=ier)
1852	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for frac_snow_nobio','','')
1853
1854	ALLOCATE (snowrho(kjpindex,nsnow),stat=ier)
1855	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snowrho','','')
1856
1857	ALLOCATE (snowheat(kjpindex,nsnow),stat=ier)
1858	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snowheat','','')
1859
1860	ALLOCATE (snowgrain(kjpindex,nsnow),stat=ier)
1861	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snowgrain','','')
1862
1863	ALLOCATE (snowtemp(kjpindex,nsnow),stat=ier)
1864	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snowtemp','','')
1865
1866	ALLOCATE (snowdz(kjpindex,nsnow),stat=ier)
1867	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for snowdz','','')
1868
1869	ALLOCATE (mc_layh(kjpindex, nslm),stat=ier)
1870	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for mc_layh','','')
1871
1872	ALLOCATE (mcl_layh(kjpindex, nslm),stat=ier)
1873	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for mcl_layh','','')
1874
1875	ALLOCATE (soilmoist(kjpindex, nslm),stat=ier)
1876	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for soilmoist','','')
1877
1878
1879	!1.5 Irrigation related variables
1880	ALLOCATE (root_deficit(kjpindex),stat=ier)
1881	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for root_deficit','','') !
1882
1883	ALLOCATE (irrig_frac(kjpindex),stat=ier)
1884	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for irrig_frac','','') !
1885	irrigation(:) = zero
1886
1887	ALLOCATE (irrigated_next(kjpindex),stat=ier) !
1888	IF (ier /= 0) CALL ipslerr_p(3,'hydrol_init','Problem in allocate of variable irrigated_next','','') !
1889
1890	ALLOCATE (fraction_aeirrig_sw(kjpindex),stat=ier) !
1891	IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for fraction_aeirrig_sw','','')
1892
1893	!! 1.6 Initialize indexing table for the vegetation fields.
1894	! In SECHIBA we work on reduced grids but to store in the full 3D filed vegetation variable
1895	! we need another index table : indexveg, indexsoil, indexnobio and indexgrnd
1896	DO ji = 1, kjpindex
1897	!
1898	DO jv = 1, nlai+1
1899	indexlai((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij + offset_omp - offset_mpi
1900	ENDDO
1901	!
1902	DO jv = 1, nvm
1903	indexveg((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij + offset_omp - offset_mpi
1904	ENDDO
1905	!
1906	DO jv = 1, nstm
1907	indexsoil((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij + offset_omp - offset_mpi
1908	ENDDO
1909	!
1910	DO jv = 1, nnobio
1911	indexnobio((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij + offset_omp - offset_mpi
1912	ENDDO
1913	!
1914	DO jv = 1, ngrnd
1915	indexgrnd((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij + offset_omp - offset_mpi
1916	ENDDO
1917	!
1918	DO jv = 1, nsnow
1919	indexsnow((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij
1920	ENDDO
1921
1922	DO jv = 1, nslm
1923	indexnslm((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij
1924	ENDDO
1925
1926	DO jv = 1, nslm
1927	indexlayer((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij + offset_omp - offset_mpi
1928	ENDDO
1929	!
1930	DO jv = 1, 2
1931	indexalb((jv-1)kjpindex + ji) = INDEX(ji) + (jv-1)kjpij + offset_omp - offset_mpi
1932	ENDDO
1933	!
1934	ENDDO
1935
1936	!! 2. Read the default value that will be put into variable which are not in the restart file
1937	CALL ioget_expval(val_exp)
1938
1939	IF (printlev_loc>=3) WRITE (numout,*) ' sechiba_init done '
1940
1941	END SUBROUTINE sechiba_init
1942
1943
1944	!! ==============================================================================================================================\n
1945	!! SUBROUTINE : sechiba_clear
1946	!!
1947	!>\BRIEF Deallocate memory of sechiba's variables
1948	!!
1949	!! DESCRIPTION : None
1950	!!
1951	!! RECENT CHANGE(S): None
1952	!!
1953	!! MAIN OUTPUT VARIABLE(S): None
1954	!!
1955	!! REFERENCE(S) : None
1956	!!
1957	!! FLOWCHART : None
1958	!! \n
1959	!_ ================================================================================================================================
1960
1961	SUBROUTINE sechiba_clear()
1962
1963	!! 1. Initialize first run
1964
1965	l_first_sechiba=.TRUE.
1966
1967	!! 2. Deallocate dynamic variables of sechiba
1968
1969	IF ( ALLOCATED (indexveg)) DEALLOCATE (indexveg)
1970	IF ( ALLOCATED (indexlai)) DEALLOCATE (indexlai)
1971	IF ( ALLOCATED (indexsoil)) DEALLOCATE (indexsoil)
1972	IF ( ALLOCATED (indexnobio)) DEALLOCATE (indexnobio)
1973	IF ( ALLOCATED (indexsnow)) DEALLOCATE (indexsnow)
1974	IF ( ALLOCATED (indexgrnd)) DEALLOCATE (indexgrnd)
1975	IF ( ALLOCATED (indexlayer)) DEALLOCATE (indexlayer)
1976	IF ( ALLOCATED (indexnslm)) DEALLOCATE (indexnslm)
1977	IF ( ALLOCATED (indexalb)) DEALLOCATE (indexalb)
1978	IF ( ALLOCATED (flood_res)) DEALLOCATE (flood_res)
1979	IF ( ALLOCATED (flood_frac)) DEALLOCATE (flood_frac)
1980	IF ( ALLOCATED (snow)) DEALLOCATE (snow)
1981	IF ( ALLOCATED (snow_age)) DEALLOCATE (snow_age)
1982	IF ( ALLOCATED (drysoil_frac)) DEALLOCATE (drysoil_frac)
1983	IF ( ALLOCATED (evap_bare_lim)) DEALLOCATE (evap_bare_lim)
1984	IF ( ALLOCATED (evap_bare_lim_ns)) DEALLOCATE (evap_bare_lim_ns)
1985	IF ( ALLOCATED (evapot)) DEALLOCATE (evapot)
1986	IF ( ALLOCATED (evapot_corr)) DEALLOCATE (evapot_corr)
1987	IF ( ALLOCATED (humrel)) DEALLOCATE (humrel)
1988	IF ( ALLOCATED (vegstress)) DEALLOCATE (vegstress)
1989	IF ( ALLOCATED (soiltile)) DEALLOCATE (soiltile)
1990	IF ( ALLOCATED (fraclut)) DEALLOCATE (fraclut)
1991	IF ( ALLOCATED (nwdFraclut)) DEALLOCATE (nwdFraclut)
1992	IF ( ALLOCATED (njsc)) DEALLOCATE (njsc)
1993	IF ( ALLOCATED (reinf_slope)) DEALLOCATE (reinf_slope)
1994	IF ( ALLOCATED (reinf_slope_soil)) DEALLOCATE (reinf_slope_soil)
1995
1996	!salma: adding soil hydraulic params
1997	IF ( ALLOCATED (ks)) DEALLOCATE (ks)
1998	IF ( ALLOCATED (nvan)) DEALLOCATE (nvan)
1999	IF ( ALLOCATED (avan)) DEALLOCATE (avan)
2000	IF ( ALLOCATED (mcr)) DEALLOCATE (mcr)
2001	IF ( ALLOCATED (mcs)) DEALLOCATE (mcs)
2002	IF ( ALLOCATED (mcfc)) DEALLOCATE (mcfc)
2003	IF ( ALLOCATED (mcw)) DEALLOCATE (mcw)
2004	!end salma: adding soil hydraulic params
2005
2006	IF ( ALLOCATED (vbeta1)) DEALLOCATE (vbeta1)
2007	IF ( ALLOCATED (vbeta4)) DEALLOCATE (vbeta4)
2008	IF ( ALLOCATED (vbeta5)) DEALLOCATE (vbeta5)
2009	IF ( ALLOCATED (soilcap)) DEALLOCATE (soilcap)
2010	IF ( ALLOCATED (soilflx)) DEALLOCATE (soilflx)
2011	IF ( ALLOCATED (temp_sol)) DEALLOCATE (temp_sol)
2012	IF ( ALLOCATED (qsurf)) DEALLOCATE (qsurf)
2013	IF ( ALLOCATED (qsintveg)) DEALLOCATE (qsintveg)
2014	IF ( ALLOCATED (vbeta2)) DEALLOCATE (vbeta2)
2015	IF ( ALLOCATED (vbeta3)) DEALLOCATE (vbeta3)
2016	IF ( ALLOCATED (vbeta3pot)) DEALLOCATE (vbeta3pot)
2017	IF ( ALLOCATED (gsmean)) DEALLOCATE (gsmean)
2018	IF ( ALLOCATED (cimean)) DEALLOCATE (cimean)
2019	IF ( ALLOCATED (gpp)) DEALLOCATE (gpp)
2020	IF ( ALLOCATED (temp_growth)) DEALLOCATE (temp_growth)
2021	IF ( ALLOCATED (veget)) DEALLOCATE (veget)
2022	IF ( ALLOCATED (veget_max)) DEALLOCATE (veget_max)
2023	IF ( ALLOCATED (tot_bare_soil)) DEALLOCATE (tot_bare_soil)
2024	IF ( ALLOCATED (lai)) DEALLOCATE (lai)
2025	IF ( ALLOCATED (frac_age)) DEALLOCATE (frac_age)
2026	IF ( ALLOCATED (height)) DEALLOCATE (height)
2027	IF ( ALLOCATED (roughheight)) DEALLOCATE (roughheight)
2028	IF ( ALLOCATED (frac_nobio)) DEALLOCATE (frac_nobio)
2029	IF ( ALLOCATED (snow_nobio)) DEALLOCATE (snow_nobio)
2030	IF ( ALLOCATED (snow_nobio_age)) DEALLOCATE (snow_nobio_age)
2031	IF ( ALLOCATED (assim_param)) DEALLOCATE (assim_param)
2032	IF ( ALLOCATED (vevapflo)) DEALLOCATE (vevapflo)
2033	IF ( ALLOCATED (vevapsno)) DEALLOCATE (vevapsno)
2034	IF ( ALLOCATED (vevapnu)) DEALLOCATE (vevapnu)
2035	IF ( ALLOCATED (totfrac_nobio)) DEALLOCATE (totfrac_nobio)
2036	IF ( ALLOCATED (floodout)) DEALLOCATE (floodout)
2037	IF ( ALLOCATED (runoff)) DEALLOCATE (runoff)
2038	IF ( ALLOCATED (drainage)) DEALLOCATE (drainage)
2039	IF ( ALLOCATED (reinfiltration)) DEALLOCATE (reinfiltration)
2040	IF ( ALLOCATED (irrigation)) DEALLOCATE (irrigation)
2041	IF ( ALLOCATED (tot_melt)) DEALLOCATE (tot_melt)
2042	IF ( ALLOCATED (vbeta)) DEALLOCATE (vbeta)
2043	IF ( ALLOCATED (rau)) DEALLOCATE (rau)
2044	IF ( ALLOCATED (deadleaf_cover)) DEALLOCATE (deadleaf_cover)
2045	IF ( ALLOCATED (stempdiag)) DEALLOCATE (stempdiag)
2046	IF ( ALLOCATED (ftempdiag)) DEALLOCATE (ftempdiag)
2047	IF ( ALLOCATED (co2_flux)) DEALLOCATE (co2_flux)
2048	IF ( ALLOCATED (shumdiag)) DEALLOCATE (shumdiag)
2049	IF ( ALLOCATED (shumdiagSAT)) DEALLOCATE (shumdiagSAT)
2050	IF ( ALLOCATED (shumdiag_perma)) DEALLOCATE (shumdiag_perma)
2051	IF ( ALLOCATED (litterhumdiag)) DEALLOCATE (litterhumdiag)
2052	IF ( ALLOCATED (litterhumdiagSAT)) DEALLOCATE (litterhumdiagSAT)
2053	IF ( ALLOCATED (ptnlev1)) DEALLOCATE (ptnlev1)
2054	IF ( ALLOCATED (k_litt)) DEALLOCATE (k_litt)
2055	IF ( ALLOCATED (vevapwet)) DEALLOCATE (vevapwet)
2056	IF ( ALLOCATED (transpir)) DEALLOCATE (transpir)
2057	IF ( ALLOCATED (transpot)) DEALLOCATE (transpot)
2058	IF ( ALLOCATED (qsintmax)) DEALLOCATE (qsintmax)
2059	IF ( ALLOCATED (rveget)) DEALLOCATE (rveget)
2060	IF ( ALLOCATED (rstruct)) DEALLOCATE (rstruct)
2061	IF ( ALLOCATED (frac_snow_veg)) DEALLOCATE (frac_snow_veg)
2062	IF ( ALLOCATED (frac_snow_nobio)) DEALLOCATE (frac_snow_nobio)
2063	IF ( ALLOCATED (snowrho)) DEALLOCATE (snowrho)
2064	IF ( ALLOCATED (snowgrain)) DEALLOCATE (snowgrain)
2065	IF ( ALLOCATED (snowtemp)) DEALLOCATE (snowtemp)
2066	IF ( ALLOCATED (snowdz)) DEALLOCATE (snowdz)
2067	IF ( ALLOCATED (snowheat)) DEALLOCATE (snowheat)
2068	IF ( ALLOCATED (cgrnd_snow)) DEALLOCATE (cgrnd_snow)
2069	IF ( ALLOCATED (dgrnd_snow)) DEALLOCATE (dgrnd_snow)
2070	IF ( ALLOCATED (lambda_snow)) DEALLOCATE(lambda_snow)
2071	IF ( ALLOCATED (gtemp)) DEALLOCATE (gtemp)
2072	IF ( ALLOCATED (pgflux)) DEALLOCATE (pgflux)
2073	IF ( ALLOCATED (mc_layh)) DEALLOCATE (mc_layh)
2074	IF ( ALLOCATED (mcl_layh)) DEALLOCATE (mcl_layh)
2075	IF ( ALLOCATED (soilmoist)) DEALLOCATE (soilmoist)
2076	IF ( ALLOCATED (root_deficit)) DEALLOCATE (root_deficit)
2077	IF ( ALLOCATED (irrig_frac)) DEALLOCATE (irrig_frac)
2078	IF ( ALLOCATED (irrigated_next)) DEALLOCATE (irrigated_next)
2079
2080	!! 3. Clear all allocated memory
2081
2082	CALL pft_parameters_clear
2083	CALL slowproc_clear
2084	CALL diffuco_clear
2085	CALL enerbil_clear
2086	CALL hydrol_clear
2087	CALL thermosoil_clear
2088	CALL condveg_clear
2089	CALL routing_wrapper_clear
2090
2091	END SUBROUTINE sechiba_clear
2092
2093
2094	!! ==============================================================================================================================\n
2095	!! SUBROUTINE : sechiba_var_init
2096	!!
2097	!>\BRIEF Calculate air density as a function of air temperature and
2098	!! pressure for each terrestrial pixel.
2099	!!
2100	!! RECENT CHANGE(S): None
2101	!!
2102	!! MAIN OUTPUT VARIABLE(S): air density (::rau, kg m^{-3}).
2103	!!
2104	!! REFERENCE(S) : None
2105	!!
2106	!! FLOWCHART : None
2107	!! \n
2108	!_ ================================================================================================================================
2109
2110	SUBROUTINE sechiba_var_init (kjpindex, rau, pb, temp_air)
2111
2112	!! 0.1 Input variables
2113
2114	INTEGER(i_std), INTENT (in) :: kjpindex !! Domain size - terrestrial pixels only (unitless)
2115	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: pb !! Surface pressure (hPa)
2116	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: temp_air !! Air temperature (K)
2117
2118	!! 0.2 Output variables
2119
2120	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: rau !! Air density @tex $(kg m^{-3})$ @endtex
2121
2122	!! 0.3 Modified variables
2123
2124	!! 0.4 Local variables
2125
2126	INTEGER(i_std) :: ji !! Indices (unitless)
2127	!_ ================================================================================================================================
2128
2129	!! 1. Calculate intial air density (::rau)
2130
2131	DO ji = 1,kjpindex
2132	rau(ji) = pa_par_hpa * pb(ji) / (cte_molr*temp_air(ji))
2133	END DO
2134
2135	IF (printlev_loc>=3) WRITE (numout,*) ' sechiba_var_init done '
2136
2137	END SUBROUTINE sechiba_var_init
2138
2139
2140	!! ==============================================================================================================================\n
2141	!! SUBROUTINE : sechiba_end
2142	!!
2143	!>\BRIEF Swap old for newly calculated soil temperature.
2144	!!
2145	!! RECENT CHANGE(S): None
2146	!!
2147	!! MAIN OUTPUT VARIABLE(S): soil temperature (::temp_sol; K)
2148	!!
2149	!! REFERENCE(S) : None
2150	!!
2151	!! FLOWCHART : None
2152	!! \n
2153	!! ================================================================================================================================
2154
2155	SUBROUTINE sechiba_end (kjpindex, temp_sol_new, temp_sol)
2156
2157
2158	!! 0.1 Input variables
2159
2160	INTEGER(i_std), INTENT (in) :: kjpindex !! Domain size - terrestrial pixels only (unitless)
2161	REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: temp_sol_new !! New soil temperature (K)
2162
2163	!! 0.2 Output variables
2164	REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: temp_sol !! Soil temperature (K)
2165
2166	!_ ================================================================================================================================
2167
2168	!! 1. Swap temperature
2169
2170	temp_sol(:) = temp_sol_new(:)
2171
2172	IF (printlev_loc>=3) WRITE (numout,*) ' sechiba_end done '
2173
2174	END SUBROUTINE sechiba_end
2175
2176	!! ==============================================================================================================================\n
2177	!! SUBROUTINE : sechiba_interface_orchidee_inca
2178	!!
2179	!>\BRIEF make the interface between surface and atmospheric chemistry
2180	!!
2181	!! DESCRIPTION : This subroutine is called from INCA, the atmospheric chemistry model. It is used to transfer variables from ORCHIDEE to INCA.
2182	!!
2183	!! RECENT CHANGE(S): move from chemistry module to be more generic (feb - 2017)
2184	!!
2185	!! MAIN OUTPUT VARIABLE(S): emission COV to be transport by orchidee to inca in fields_out array
2186	!!
2187	!! REFERENCE(S) : None
2188	!!
2189	!! FLOWCHART : None
2190	!! \n
2191	!! ================================================================================================================================
2192	SUBROUTINE sechiba_interface_orchidee_inca( &
2193	nvm_out, veget_max_out, veget_frac_out, lai_out, snow_out, &
2194	field_out_COV_names, fields_out_COV, field_in_COV_names, fields_in_COV, &
2195	field_out_Nsoil_names, fields_out_Nsoil, nnspec_out)
2196
2197
2198	INTEGER, INTENT(out) :: nvm_out !! Number of vegetation types
2199	REAL(r_std), DIMENSION (:,:), INTENT(out) :: veget_max_out !! Max. fraction of vegetation type (LAI -> infty)
2200	REAL(r_std), DIMENSION (:,:), INTENT(out) :: veget_frac_out !! Fraction of vegetation type (unitless, 0-1)
2201	REAL(r_std), DIMENSION (:,:), INTENT(out) :: lai_out !! Surface foliere
2202	REAL(r_std), DIMENSION (:) , INTENT(out) :: snow_out !! Snow mass [Kg/m^2]
2203
2204	!
2205	! Optional arguments
2206	!
2207	! Names and fields for emission variables : to be transport by Orchidee to Inca
2208	CHARACTER(LEN=*),DIMENSION(:), OPTIONAL, INTENT(IN) :: field_out_COV_names
2209	REAL(r_std),DIMENSION(:,:,:), OPTIONAL, INTENT(OUT) :: fields_out_COV
2210	!
2211	! Names and fields for deposit variables : to be transport from chemistry model by INCA to ORCHIDEE.
2212	CHARACTER(LEN=*),DIMENSION(:), OPTIONAL, INTENT(IN) :: field_in_COV_names
2213	REAL(r_std),DIMENSION(:,:), OPTIONAL, INTENT(IN) :: fields_in_COV
2214
2215	CHARACTER(LEN=*),DIMENSION(:), OPTIONAL, INTENT(IN) :: field_out_Nsoil_names !! Not used before ORCHIDEE_3
2216	REAL(r_std),DIMENSION(:,:,:), OPTIONAL, INTENT(out) :: fields_out_Nsoil !! Not used before ORCHIDEE_3
2217	INTEGER, OPTIONAL, INTENT(out) :: nnspec_out !! Not used before ORCHIDEE_3
2218
2219
2220	IF (PRESENT(field_out_Nsoil_names) .OR. PRESENT(fields_out_Nsoil) .OR. PRESENT(nnspec_out)) THEN
2221	CALL ipslerr_p(3,'sechiba_interface_orchidee_inca','This version of Orchidee is not usable for coupling nitrogen with atmosphere',&
2222	'Please use Orchidee_3 or modify coupling between atm and surf','')
2223	ENDIF
2224
2225	! Variables always transmitted from sechiba to inca
2226	nvm_out = nvm
2227	veget_max_out(:,:) = veget_max(:,:)
2228	veget_frac_out(:,:) = veget(:,:)
2229	lai_out(:,:) = lai(:,:)
2230	snow_out(:) = snow(:)
2231
2232	! Call chemistry_flux_interface if at least one of variables field_out_names or
2233	! field_in_names is present in the argument list of sechiba_interface_orchidee_inca when called from inca.
2234	IF (PRESENT(field_out_COV_names) .AND. .NOT. PRESENT(field_in_COV_names)) THEN
2235	CALL chemistry_flux_interface(field_out_names=field_out_COV_names, fields_out=fields_out_COV)
2236	ELSE IF (.NOT. PRESENT(field_out_COV_names) .AND. PRESENT(field_in_COV_names)) THEN
2237	CALL chemistry_flux_interface(field_in_names=field_in_COV_names, fields_in=fields_in_COV)
2238	ELSE IF (PRESENT(field_out_COV_names) .AND. PRESENT(field_in_COV_names)) THEN
2239	CALL chemistry_flux_interface(field_out_names=field_out_COV_names, fields_out=fields_out_COV, &
2240	field_in_names=field_in_COV_names, fields_in=fields_in_COV)
2241	ENDIF
2242
2243	END SUBROUTINE sechiba_interface_orchidee_inca
2244
2245
2246	END MODULE sechiba
2247

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