1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Sébastien Denvil |
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5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | |
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14 | #========================================================= |
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15 | # The documentation of this file can be automatically generated |
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16 | # if you use the prefix #D- for comments to be extracted. |
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17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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18 | #========================================================= |
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19 | |
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20 | #D-#================================================== |
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21 | #D-LibIGCM_sys for Vargas |
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22 | #D-#================================================== |
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23 | #D- |
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24 | #D- This ksh library if a layer under some usefull |
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25 | #D-environment variables and shell commands. |
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26 | #D-All those definitions depend on host particularities. |
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27 | #D-It manages a stack mechanism and test validity of operations. |
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28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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29 | |
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30 | #==================================================== |
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31 | # libIGCM_sys PARAMETERS |
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32 | #==================================================== |
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33 | |
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34 | #==================================================== |
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35 | # set DEBUG_sys to true to output calls of function |
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36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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37 | |
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38 | #==================================================== |
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39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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40 | typeset -r DRYRUN=${DRYRUN:=0} |
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41 | |
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42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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43 | # ------------------------------------------------------------------------------------- |
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44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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45 | # | | Cp/Exe param files | | Chmod | | |
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46 | # | | Qsub | | | | |
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47 | # ------------------------------------------------------------------------------------- |
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48 | # | 0 | yes | yes | yes | yes | |
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49 | # ------------------------------------------------------------------------------------- |
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50 | # | 1 | yes | yes | yes | no | |
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51 | # ------------------------------------------------------------------------------------- |
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52 | # | 2 | yes | yes | no | no | |
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53 | # ------------------------------------------------------------------------------------- |
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54 | # | 3 | yes | no | no | no | |
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55 | # ------------------------------------------------------------------------------------- |
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56 | |
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57 | #===================================================== |
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58 | # Global Variables : |
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59 | #===================================================== |
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60 | # Language : "fr" or "en" |
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61 | typeset -r MYLANG="fr" |
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62 | |
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63 | #===================================================== |
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64 | # Host and user names |
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65 | # $hostname ou hostname |
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66 | typeset HOST=${HOST:=$( hostname )} |
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67 | # $username ou whoami |
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68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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69 | # $hostname of the MASTER job |
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70 | typeset -r MASTER=vargas |
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71 | |
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72 | #D- |
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73 | #D-#================================================== |
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74 | #D-Program used in libIGCM |
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75 | #D-#================================================== |
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76 | |
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77 | # rsync with path |
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78 | typeset -r RSYNC=/usr/local/bin/rsync |
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79 | # RSYNC_opt args to rsync |
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80 | typeset -r RSYNC_opt="-va" |
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81 | # ie storage filesystem |
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82 | typeset -r STOREHOST=gaya.idris.fr |
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83 | typeset -r REMOTE_RSYNC=/u/rech/ces/rces452/RSYNC/bin/rsync |
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84 | |
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85 | #==================================================== |
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86 | # Host specific DIRECTORIES |
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87 | #==================================================== |
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88 | |
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89 | #==================================================== |
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90 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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91 | typeset -r R_EXE="${MODIPSL}/bin" |
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92 | |
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93 | #==================================================== |
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94 | #- SUBMIT_DIR : submission dir |
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95 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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96 | |
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97 | #==================================================== |
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98 | #- ARCHIVE |
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99 | typeset -r ARCHIVE=$( echo ${HOME} | sed -e "s/homegpfs/u/" ) |
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100 | |
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101 | #==================================================== |
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102 | #- Mirror libIGCM from vargas to ulam |
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103 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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104 | |
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105 | #==================================================== |
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106 | #- libIGCM_POST |
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107 | PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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108 | typeset -r HOME_POST=$( echo ${HOME} | sed -e "s/homegpfs/home/" ) |
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109 | typeset -r libIGCM_POST=${HOME_POST}/MIRROR/${PATHlibIGCM}/libIGCM |
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110 | |
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111 | #==================================================== |
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112 | #- IN |
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113 | typeset -r R_IN=${R_IN:=/u/rech/psl/rpsl035/IGCM} |
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114 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/u/rech/psl/rpsl376} |
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115 | |
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116 | #==================================================== |
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117 | #- OUT |
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118 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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119 | |
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120 | #==================================================== |
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121 | #- R_BUF Buffer to pack files |
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122 | typeset -r R_BUF=${WORKDIR}/IGCM_OUT |
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123 | |
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124 | #==================================================== |
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125 | #- OUT_POST |
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126 | typeset -r R_OUT_POST=$( echo ${HOME} | sed -e "s/homegpfs/workdir/" )/IGCM_OUT |
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127 | |
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128 | #==================================================== |
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129 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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130 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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131 | |
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132 | #==================================================== |
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133 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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134 | typeset -r BIG_DIR=${BIG_DIR:=${WORKDIR}/REBUILD} |
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135 | |
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136 | #==================================================== |
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137 | #- HOST_MPIRUN_COMMAND |
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138 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time poe"} |
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139 | |
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140 | #==================================================== |
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141 | #- Max number of arguments passed to nco operator or demigration command |
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142 | UNIX_MAX_LIMIT=120 |
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143 | |
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144 | #==================================================== |
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145 | #- Default number of MPI task for IPSL coupled model |
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146 | #- required for backward compatibility |
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147 | #- |
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148 | DEFAULT_NUM_PROC_OCE=5 |
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149 | DEFAULT_NUM_PROC_CPL=1 |
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150 | [ X${BATCH_NUM_PROC_TOT} = X ] || (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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151 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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152 | |
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153 | #D-#================================================== |
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154 | #D-function IGCM_sys_RshMaster |
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155 | #D-* Purpose: Connection to frontend machine. |
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156 | #D-* Examples: |
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157 | #D- |
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158 | (( RshMNum = 0 )) |
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159 | function IGCM_sys_RshMaster { |
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160 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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161 | |
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162 | typeset THEFILE OUTFILE ERR |
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163 | |
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164 | RshDIR=${WORKDIR}/RUN_DIR/${config_UserChoices_TagName}/${config_UserChoices_JobName}.${$} |
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165 | if [ ! -d ${RshDIR} ] ; then |
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166 | IGCM_sys_Mkdir ${RshDIR} |
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167 | fi |
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168 | THEFILE=${RshDIR}/file_sys_RshMaster_$$_${RshMNum} |
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169 | echo '#!/bin/ksh' > ${THEFILE} |
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170 | echo "export libIGCM=${libIGCM} > /dev/null 2>&1" >> ${THEFILE} |
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171 | echo "export DEBUG_debug=${DEBUG_debug} > /dev/null 2>&1" >> ${THEFILE} |
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172 | echo ". ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh > /dev/null 2>&1" >> ${THEFILE} |
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173 | echo ". ${libIGCM}/libIGCM_card/libIGCM_card.ksh > /dev/null 2>&1" >> ${THEFILE} |
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174 | echo "${@} " >> ${THEFILE} |
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175 | |
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176 | # No frontend queue on brodie : just rsh the job on the frontend with submission. |
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177 | sed -e "s@IGCM_sys_Qsub\(.*\)@\1@" ${THEFILE} > ${THEFILE}_ |
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178 | |
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179 | chmod u+x ${THEFILE}_ |
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180 | |
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181 | OUTFILE=${RshDIR}/out_RshMaster.$$.${RshMNum} |
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182 | (( RshMNum = RshMNum + 1 )) |
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183 | |
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184 | rsh ${MASTER} 'bash -c "nohup '${THEFILE}'_ > '${OUTFILE}' 2>&1 &"' |
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185 | if [ $? -gt 0 ] ; then |
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186 | echo "IGCM_sys_RshMaster : erreur." |
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187 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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188 | fi |
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189 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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190 | } |
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191 | |
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192 | #D-#================================================== |
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193 | #D-function IGCM_sys_RshArchive |
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194 | #D-* Purpose: Archive rsh command |
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195 | #D-* Examples: |
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196 | #D- |
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197 | function IGCM_sys_RshArchive { |
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198 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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199 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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200 | ${@} |
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201 | EOF |
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202 | if [ $? -gt 0 ] ; then |
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203 | echo "IGCM_sys_RshArchive : erreur." |
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204 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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205 | fi |
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206 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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207 | } |
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208 | |
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209 | #D-#================================================== |
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210 | #D-function IGCM_sys_RshPost |
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211 | #D-* Purpose: Post-process rsh command |
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212 | #D-* Examples: |
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213 | #D- |
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214 | function IGCM_sys_RshPost { |
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215 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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216 | if ( $DEBUG_sys ) ; then |
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217 | echo "IGCM_sys_RshPost :" $@ |
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218 | fi |
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219 | |
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220 | # keep standard input to keep it for postpone if ulam don't answer |
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221 | cat >/tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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222 | |
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223 | ## Add submission for old postponed files only if command is a Qsub |
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224 | ## |
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225 | ISITQSUB=0 |
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226 | grep Qsub /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} >/dev/null 2>&1 && ISITQSUB=1 |
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227 | if ( [ ${ISITQSUB} -gt 0 ] ) ; then |
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228 | if [ -d ${SUBMIT_DIR}/POSTPONE ] ; then |
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229 | for postponed_file in ${SUBMIT_DIR}/POSTPONE/* ; do |
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230 | if [ -f ${postponed_file} ] ; then |
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231 | IGCM_debug_Print 2 " submit postponed file : " ${postponed_file} |
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232 | rsh ulam exec /bin/ksh <${postponed_file} |
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233 | if [ $? -eq 0 ] ; then |
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234 | IGCM_sys_Rm ${postponed_file} |
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235 | else |
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236 | IGCM_debug_Print 2 "keep postponed file for an other submission :" ${postponed_file} |
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237 | fi |
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238 | fi |
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239 | done |
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240 | fi |
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241 | fi |
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242 | |
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243 | RETURN=0 |
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244 | # rsh ulam command |
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245 | rsh ulam exec /bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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246 | RETURN=$? |
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247 | |
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248 | # keep standard input for postpone if ulam don't answer |
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249 | if ( [ ${RETURN} -gt 0 ] ) ; then |
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250 | IGCM_debug_Print 2 "Postpone tmp_IGCM_sys_RshPost_$$_${LOGNAME}" |
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251 | [ -d ${SUBMIT_DIR}/POSTPONE ] || mkdir ${SUBMIT_DIR}/POSTPONE |
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252 | mv /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} ${SUBMIT_DIR}/POSTPONE |
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253 | else |
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254 | IGCM_sys_Rm /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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255 | fi |
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256 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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257 | } |
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258 | |
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259 | #D-#================================================== |
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260 | #D-function IGCM_sys_SendMail |
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261 | #D-* Purpose: Send mail when simulation is over |
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262 | #D-* Examples: |
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263 | #D- |
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264 | function IGCM_sys_SendMail { |
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265 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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266 | if ( $DEBUG_sys ) ; then |
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267 | echo "IGCM_sys_SendMail :" $@ |
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268 | fi |
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269 | |
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270 | if ( ${ExitFlag} ) ; then |
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271 | status=failed |
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272 | else |
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273 | status=completed |
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274 | fi |
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275 | cat << END_MAIL > job_end.mail |
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276 | Dear ${LOGIN}, |
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277 | |
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278 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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279 | Job started : ${DateBegin} |
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280 | Job ended : ${DateEnd} |
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281 | Output files are available in ${R_SAVE} |
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282 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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283 | END_MAIL |
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284 | |
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285 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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286 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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287 | elif [ -f ~/.forward ] ; then |
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288 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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289 | else |
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290 | mailx -s "${config_UserChoices_JobName} ${status}" ${USER} < job_end.mail |
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291 | fi |
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292 | |
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293 | if [ $? -gt 0 ] ; then |
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294 | echo "IGCM_sys_SendMail : erreur." |
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295 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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296 | fi |
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297 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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298 | } |
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299 | |
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300 | #D-#================================================== |
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301 | #D-function IGCM_sys_Mkdir |
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302 | #D-* Purpose: Master locale mkdir command |
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303 | #D-* Examples: |
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304 | #D- |
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305 | function IGCM_sys_Mkdir { |
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306 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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307 | if ( $DEBUG_sys ) ; then |
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308 | echo "IGCM_sys_Mkdir :" $@ |
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309 | fi |
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310 | if [ ! -d ${1} ]; then |
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311 | \mkdir -p $1 |
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312 | if [ $? -gt 0 ] ; then |
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313 | echo "IGCM_sys_Mkdir : erreur." |
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314 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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315 | fi |
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316 | fi |
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317 | # vérification : |
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318 | if [ ! -d ${1} ] ; then |
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319 | echo "IGCM_sys_Mkdir : erreur." |
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320 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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321 | fi |
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322 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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323 | } |
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324 | |
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325 | #D-#================================================== |
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326 | #D-function IGCM_sys_MkdirArchive |
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327 | #D-* Purpose: Mkdir on Archive |
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328 | #D-* Examples: |
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329 | #D- |
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330 | function IGCM_sys_MkdirArchive { |
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331 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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332 | if ( $DEBUG_sys ) ; then |
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333 | echo "IGCM_sys_MkdirArchive :" $@ |
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334 | fi |
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335 | #- creation de repertoire sur le serveur fichier |
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336 | rsh ${STOREHOST} -n mkdir -p $1 |
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337 | |
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338 | if [ $? -gt 0 ] ; then |
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339 | echo "IGCM_sys_MkdirArchive : erreur." |
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340 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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341 | fi |
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342 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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343 | } |
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344 | |
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345 | #D-#================================================== |
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346 | #D-function IGCM_sys_MkdirWork |
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347 | #D-* Purpose: Mkdir on Work |
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348 | #D-* Examples: |
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349 | #D- |
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350 | function IGCM_sys_MkdirWork { |
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351 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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352 | if ( $DEBUG_sys ) ; then |
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353 | echo "IGCM_sys_MkdirWork :" $@ |
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354 | fi |
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355 | #- creation de repertoire sur le serveur fichier |
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356 | if [ ! -d ${1} ]; then |
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357 | \mkdir -p $1 |
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358 | if [ $? -gt 0 ] ; then |
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359 | echo "IGCM_sys_MkdirWork : erreur." |
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360 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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361 | fi |
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362 | fi |
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363 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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364 | } |
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365 | |
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366 | #D-#================================================== |
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367 | #D-function IGCM_sys_Cd |
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368 | #D-* Purpose: master cd command |
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369 | #D-* Examples: |
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370 | #D- |
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371 | function IGCM_sys_Cd { |
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372 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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373 | if ( $DEBUG_sys ) ; then |
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374 | echo "IGCM_sys_Cd :" $@ |
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375 | fi |
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376 | \cd $1 |
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377 | if [ $? -gt 0 ] ; then |
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378 | echo "IGCM_sys_Cd : erreur." |
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379 | IGCM_debug_Exit "IGCM_sys_Cd" |
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380 | fi |
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381 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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382 | } |
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383 | |
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384 | #D-#================================================== |
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385 | #D-function IGCM_sys_Chmod |
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386 | #D-* Purpose: Chmod |
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387 | #D-* Examples: |
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388 | #D- |
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389 | function IGCM_sys_Chmod { |
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390 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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391 | if ( $DEBUG_sys ) ; then |
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392 | echo "IGCM_sys_Chmod :" $@ |
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393 | fi |
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394 | if [ $DRYRUN -le 1 ]; then |
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395 | \chmod $@ |
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396 | if [ $? -gt 0 ] ; then |
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397 | echo "IGCM_sys_Chmod : erreur." |
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398 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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399 | fi |
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400 | else |
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401 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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402 | fi |
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403 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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404 | } |
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405 | |
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406 | #D-#================================================== |
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407 | #D-function IGCM_sys_FileSize |
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408 | #D-* Purpose: Filesize |
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409 | #D-* Examples: |
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410 | #D- |
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411 | function IGCM_sys_FileSize { |
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412 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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413 | |
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414 | typeset sizeF |
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415 | set +A sizeF -- $( ls -la ${1} ) |
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416 | if [ $? -gt 0 ] ; then |
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417 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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418 | fi |
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419 | eval ${2}=${sizeF[4]} |
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420 | |
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421 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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422 | } |
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423 | |
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424 | #D-#================================================== |
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425 | #D-function IGCM_sys_TestDir |
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426 | #D-* Purpose: Test Directory that must exists |
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427 | #D-* Examples: |
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428 | #D- |
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429 | function IGCM_sys_TestDir { |
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430 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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431 | if ( $DEBUG_sys ) ; then |
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432 | echo "IGCM_sys_TestDir :" $@ |
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433 | fi |
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434 | typeset ExistFlag |
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435 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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436 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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437 | |
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438 | return ${ExistFlag} |
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439 | } |
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440 | |
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441 | #D-#================================================== |
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442 | #D-function IGCM_sys_TestDirArchive |
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443 | #D-* Purpose: Test Directory that must exists on Archive |
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444 | #D-* Examples: |
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445 | #D- |
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446 | function IGCM_sys_TestDirArchive { |
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447 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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448 | if ( $DEBUG_sys ) ; then |
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449 | echo "IGCM_sys_TestDirArchive :" $@ |
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450 | fi |
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451 | typeset ExistFlag |
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452 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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453 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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454 | |
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455 | return ${ExistFlag} |
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456 | } |
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457 | |
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458 | #D-#================================================== |
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459 | #D-function IGCM_sys_IsFileArchived |
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460 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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461 | #D-* always true on vargas. |
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462 | #D-* Examples: |
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463 | #D- |
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464 | function IGCM_sys_IsFileArchived { |
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465 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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466 | if ( $DEBUG_sys ) ; then |
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467 | echo "IGCM_sys_IsFileArchived :" $@ |
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468 | fi |
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469 | typeset IsArchivedFlag |
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470 | IsArchivedFlag=$( echo 0 ) |
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471 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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472 | |
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473 | return ${IsArchivedFlag} |
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474 | } |
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475 | |
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476 | #D-#================================================== |
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477 | #D-function IGCM_sys_TestFileArchive |
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478 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
479 | #D-* Examples: |
---|
480 | #D- |
---|
481 | function IGCM_sys_TestFileArchive { |
---|
482 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
483 | typeset ExistFlag |
---|
484 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
---|
485 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
486 | |
---|
487 | return ${ExistFlag} |
---|
488 | } |
---|
489 | |
---|
490 | #D-#================================================== |
---|
491 | #D-function IGCM_sys_TestFileBuffer |
---|
492 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
493 | #D-* Examples: |
---|
494 | #D- |
---|
495 | function IGCM_sys_TestFileBuffer { |
---|
496 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
497 | typeset ExistFlag |
---|
498 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
499 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
500 | |
---|
501 | return ${ExistFlag} |
---|
502 | } |
---|
503 | |
---|
504 | #D-#================================================== |
---|
505 | #D-function IGCM_sys_CountFileArchive |
---|
506 | #D-* Purpose: Count files on Archive filesystem |
---|
507 | #D-* Examples: |
---|
508 | #D- |
---|
509 | function IGCM_sys_CountFileArchive { |
---|
510 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
511 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
---|
512 | if [ $? -gt 0 ] ; then |
---|
513 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
514 | fi |
---|
515 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
516 | } |
---|
517 | |
---|
518 | #D-#================================================== |
---|
519 | #D-function IGCM_sys_CountFileBuffer |
---|
520 | #D-* Purpose: Count files on Scratch filesystem |
---|
521 | #D-* Examples: |
---|
522 | #D- |
---|
523 | function IGCM_sys_CountFileBuffer { |
---|
524 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
525 | ls ${@} 2>/dev/null | wc -l |
---|
526 | if [ $? -gt 0 ] ; then |
---|
527 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
528 | fi |
---|
529 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
530 | } |
---|
531 | |
---|
532 | #D-#================================================== |
---|
533 | #D-function IGCM_sys_Tree |
---|
534 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
535 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
536 | #D- |
---|
537 | function IGCM_sys_Tree { |
---|
538 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
539 | if ( $DEBUG_sys ) ; then |
---|
540 | echo "IGCM_sys_Tree :" $@ |
---|
541 | fi |
---|
542 | |
---|
543 | \mfls -r $@ |
---|
544 | |
---|
545 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
546 | } |
---|
547 | |
---|
548 | #D-#================================================== |
---|
549 | #D-function IGCM_sys_Tar |
---|
550 | #D-* Purpose: master un-tar command |
---|
551 | #D-* Examples: |
---|
552 | #D- |
---|
553 | function IGCM_sys_Tar { |
---|
554 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
555 | if ( $DEBUG_sys ) ; then |
---|
556 | echo "IGCM_sys_Tar :" $@ |
---|
557 | fi |
---|
558 | \tar cf $@ |
---|
559 | if [ $? -gt 0 ] ; then |
---|
560 | echo "IGCM_sys_Tar : erreur." |
---|
561 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
562 | fi |
---|
563 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
564 | } |
---|
565 | |
---|
566 | #D-#================================================== |
---|
567 | #D-function IGCM_sys_UnTar |
---|
568 | #D-* Purpose: master un-tar command |
---|
569 | #D-* Examples: |
---|
570 | #D- |
---|
571 | function IGCM_sys_UnTar { |
---|
572 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
573 | if ( $DEBUG_sys ) ; then |
---|
574 | echo "IGCM_sys_UnTar :" $@ |
---|
575 | fi |
---|
576 | \tar xvf $1 |
---|
577 | if [ $? -gt 0 ] ; then |
---|
578 | echo "IGCM_sys_UnTar : erreur." |
---|
579 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
580 | fi |
---|
581 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
582 | } |
---|
583 | |
---|
584 | #D-#================================================== |
---|
585 | #D-function IGCM_sys_Qsub |
---|
586 | #D-* Purpose: Qsub new job |
---|
587 | #D-* Examples: |
---|
588 | #D- |
---|
589 | function IGCM_sys_Qsub { |
---|
590 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
591 | |
---|
592 | typeset ERROR |
---|
593 | ERROR=0 |
---|
594 | |
---|
595 | if ( $DEBUG_sys ) ; then |
---|
596 | echo "IGCM_sys_Qsub :" $@ |
---|
597 | fi |
---|
598 | # We have to change output/error file |
---|
599 | [ ${#@} = 1 ] && REP_FOR_JOB=$LOADL_STEP_INITDIR |
---|
600 | [ ${#@} = 2 ] && REP_FOR_JOB=$2 |
---|
601 | sed -e "s/\# \@ output *= .*/\# \@ output = ${Script_Output}/" -e "s/\# \@ error *= .*/\# \@ error = ${Script_Output}/" <$1 >${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
602 | { |
---|
603 | [ ${#@} = 1 ] && ( cd $LOADL_STEP_INITDIR ; /usr/local/bin/llsubmit JOB_FOR_IGCM ; ERROR=$? ; cd - ; ) |
---|
604 | [ ${#@} = 2 ] && ( cd $2 ; /usr/local/bin/llsubmit JOB_FOR_IGCM ; ERROR=$? ; cd - ; ) |
---|
605 | } |
---|
606 | if [ ${ERROR} -gt 0 ] ; then |
---|
607 | echo "IGCM_sys_Qsub : erreur $@." |
---|
608 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
609 | fi |
---|
610 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
611 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
612 | |
---|
613 | } |
---|
614 | |
---|
615 | #D-#================================================== |
---|
616 | #D-function IGCM_sys_QsubPost |
---|
617 | #D-* Purpose: Qsub new job on scalaire |
---|
618 | #D-* Examples: |
---|
619 | #D- |
---|
620 | function IGCM_sys_QsubPost { |
---|
621 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
622 | if ( $DEBUG_sys ) ; then |
---|
623 | echo "IGCM_sys_QsubPost :" $@ |
---|
624 | fi |
---|
625 | cd ${POST_DIR} |
---|
626 | /opt/ibmll/LoadL/full/bin/llsubmit ${libIGCM_POST}/$1.job |
---|
627 | cd - |
---|
628 | if [ $? -gt 0 ] ; then |
---|
629 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
630 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
631 | fi |
---|
632 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
633 | } |
---|
634 | |
---|
635 | #D-************************* |
---|
636 | #D- File transfer functions |
---|
637 | #D-************************* |
---|
638 | #D- |
---|
639 | |
---|
640 | #D-#================================================== |
---|
641 | #D-function IGCM_sys_Rsync_out |
---|
642 | #D-* Purpose: treat return val of rsync |
---|
643 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
644 | #D- Error values and explanations can depend on your system version. |
---|
645 | function IGCM_sys_Rsync_out { |
---|
646 | status=$1 |
---|
647 | if [ ! $status ] ; then |
---|
648 | echo "rsync error !" |
---|
649 | fi |
---|
650 | |
---|
651 | if [ $MYLANG = "fr" ]; then |
---|
652 | case $status in |
---|
653 | 0) return ;; |
---|
654 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
655 | echo "Erreur de syntaxe ou d'utilisation." |
---|
656 | return;; |
---|
657 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
658 | echo "Incompatibilité de protocole." |
---|
659 | return;; |
---|
660 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
661 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
662 | echo "répertoires" |
---|
663 | return;; |
---|
664 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
665 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
666 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
667 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
668 | echo "pas par le serveur a été spécifiée." |
---|
669 | return;; |
---|
670 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
671 | echo "Erreur dans le socket d'entrée sortie" |
---|
672 | return;; |
---|
673 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
674 | echo "Erreur d'entrée sortie fichier" |
---|
675 | return;; |
---|
676 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
677 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
678 | return;; |
---|
679 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
680 | echo "Erreur avec les diagnostics du programme" |
---|
681 | return;; |
---|
682 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
683 | echo "Erreur dans le code IPC" |
---|
684 | return;; |
---|
685 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
686 | echo "SIGUSR1 ou SIGINT reçu" |
---|
687 | return;; |
---|
688 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
689 | echo "Une erreur retournée par waitpid()" |
---|
690 | return;; |
---|
691 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
692 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
693 | return;; |
---|
694 | 23) echo "" |
---|
695 | echo "Erreur fichier inexistant" |
---|
696 | return;; |
---|
697 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
698 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
699 | return;; |
---|
700 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
701 | return;; |
---|
702 | esac |
---|
703 | elif [ $MYLANG = "en" ] ; then |
---|
704 | case $status in |
---|
705 | 0) return;; |
---|
706 | 1) echo "rsync error : Syntax or usage error " |
---|
707 | return;; |
---|
708 | 2) echo "rsync error : Protocol incompatibility " |
---|
709 | return;; |
---|
710 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
711 | return;; |
---|
712 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
713 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
714 | echo "them; or an option was specified that is supported by the client and" |
---|
715 | echo "not by the server." |
---|
716 | return;; |
---|
717 | 5) echo "rsync error : Error starting client-server protocol" |
---|
718 | return;; |
---|
719 | 10) echo "rsync error : Error in socket I/O " |
---|
720 | return;; |
---|
721 | 11) echo "rsync error : Error in file I/O " |
---|
722 | return;; |
---|
723 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
724 | return;; |
---|
725 | 13) echo "rsync error : Errors with program diagnostics " |
---|
726 | return;; |
---|
727 | 14) echo "rsync error : Error in IPC code " |
---|
728 | return;; |
---|
729 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
730 | return;; |
---|
731 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
732 | return;; |
---|
733 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
734 | return;; |
---|
735 | 23) echo "rsync error : Partial transfer due to error" |
---|
736 | return;; |
---|
737 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
738 | return;; |
---|
739 | 30) echo "rsync error : Timeout in data send/receive " |
---|
740 | return;; |
---|
741 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
742 | return;; |
---|
743 | esac |
---|
744 | else |
---|
745 | echo "unknown language $MYLANG." |
---|
746 | return |
---|
747 | fi |
---|
748 | } |
---|
749 | |
---|
750 | #D-#================================================== |
---|
751 | #D-function IGCM_sys_Miror_libIGCM |
---|
752 | #D-* Purpose: Mirror libIGCM PATH and lib to ulam |
---|
753 | #D-* Examples: |
---|
754 | #D- |
---|
755 | function IGCM_sys_Mirror_libIGCM { |
---|
756 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
757 | if ( $DEBUG_sys ) ; then |
---|
758 | echo "IGCM_sys_Mirror_libIGCM" |
---|
759 | fi |
---|
760 | |
---|
761 | typeset status |
---|
762 | |
---|
763 | IGCM_sys_RshPost <<-EOF |
---|
764 | mkdir -p ${HOME_POST}/MIRROR/${PATHlibIGCM} |
---|
765 | EOF |
---|
766 | rsh ulam -n hostname > /dev/null 2>&1 |
---|
767 | status=$? |
---|
768 | if [ $status -eq 0 ] ; then |
---|
769 | echo ${RSYNC} ${RSYNC_opt} -e "rsh " ${libIGCM} ulam:${HOME_POST}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
770 | ${RSYNC} ${RSYNC_opt} -e "rsh " ${libIGCM} ulam:${HOME_POST}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
771 | status=$? |
---|
772 | |
---|
773 | if [ ${status} -gt 0 ] ; then |
---|
774 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on ulam." |
---|
775 | cat out_rsync |
---|
776 | fi |
---|
777 | IGCM_sys_Rm out_rsync |
---|
778 | else |
---|
779 | echo "No POST-TREATMENT avaible because ulam is down." |
---|
780 | fi |
---|
781 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
782 | } |
---|
783 | |
---|
784 | #D-#================================================== |
---|
785 | #D-function IGCM_sys_Cp |
---|
786 | #D-* Purpose: generic cp |
---|
787 | #D-* Examples: |
---|
788 | #D- |
---|
789 | function IGCM_sys_Cp { |
---|
790 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
791 | if ( $DEBUG_sys ) ; then |
---|
792 | echo "IGCM_sys_Cp :" $@ |
---|
793 | fi |
---|
794 | |
---|
795 | typeset status |
---|
796 | |
---|
797 | echo cp $@ > out_rsync 2>&1 |
---|
798 | \cp $@ >> out_rsync 2>&1 |
---|
799 | status=$? |
---|
800 | |
---|
801 | if [ ${status} -gt 0 ] ; then |
---|
802 | echo "IGCM_sys_Cp : error." |
---|
803 | cat out_rsync |
---|
804 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
805 | else |
---|
806 | \rm out_rsync |
---|
807 | fi |
---|
808 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
809 | } |
---|
810 | |
---|
811 | #D-#================================================== |
---|
812 | #D-function IGCM_sys_Rm |
---|
813 | #D-* Purpose: generic rm |
---|
814 | #D-* Examples: |
---|
815 | #D- |
---|
816 | function IGCM_sys_Rm { |
---|
817 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
818 | if ( $DEBUG_sys ) ; then |
---|
819 | echo "IGCM_sys_Rm :" $@ |
---|
820 | fi |
---|
821 | |
---|
822 | typeset status |
---|
823 | |
---|
824 | echo rm $@ > out_rsync 2>&1 |
---|
825 | \rm $@ >> out_rsync 2>&1 |
---|
826 | status=$? |
---|
827 | |
---|
828 | if [ ${status} -gt 0 ] ; then |
---|
829 | echo "IGCM_sys_Rm : error." |
---|
830 | cat out_rsync |
---|
831 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
832 | else |
---|
833 | \rm out_rsync |
---|
834 | fi |
---|
835 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
836 | } |
---|
837 | |
---|
838 | #D-#================================================== |
---|
839 | #D-function IGCM_sys_RmRunDir |
---|
840 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
841 | #D- scheduler will do the job) |
---|
842 | #D-* Examples: |
---|
843 | #D- |
---|
844 | function IGCM_sys_RmRunDir { |
---|
845 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
846 | if ( $DEBUG_sys ) ; then |
---|
847 | echo "IGCM_sys_RmRunDir :" $@ |
---|
848 | echo "Dummy call, let the scheduler do that." |
---|
849 | fi |
---|
850 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
851 | } |
---|
852 | |
---|
853 | #D-#================================================== |
---|
854 | #D-function IGCM_sys_Mv |
---|
855 | #D-* Purpose: generic move |
---|
856 | #D-* Examples: |
---|
857 | #D- |
---|
858 | function IGCM_sys_Mv { |
---|
859 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
860 | if ( $DEBUG_sys ) ; then |
---|
861 | echo "IGCM_sys_Mv :" $@ |
---|
862 | fi |
---|
863 | |
---|
864 | if [ $DRYRUN = 0 ]; then |
---|
865 | |
---|
866 | typeset status |
---|
867 | |
---|
868 | echo mv $@ > out_rsync 2>&1 |
---|
869 | \mv $@ >> out_rsync 2>&1 |
---|
870 | status=$? |
---|
871 | |
---|
872 | if [ ${status} -gt 0 ] ; then |
---|
873 | echo "IGCM_sys_Mv : error in mv." |
---|
874 | cat out_rsync |
---|
875 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
876 | else |
---|
877 | \rm out_rsync |
---|
878 | fi |
---|
879 | else |
---|
880 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
881 | fi |
---|
882 | |
---|
883 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
884 | } |
---|
885 | |
---|
886 | #D-#================================================== |
---|
887 | #D-function IGCM_sys_Put_Dir |
---|
888 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
889 | #D-* Examples: |
---|
890 | #D- |
---|
891 | function IGCM_sys_Put_Dir { |
---|
892 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
893 | if ( $DEBUG_sys ) ; then |
---|
894 | echo "IGCM_sys_Put_Dir :" $@ |
---|
895 | fi |
---|
896 | if [ $DRYRUN = 0 ]; then |
---|
897 | if [ ! -d ${1} ] ; then |
---|
898 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
899 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
900 | return |
---|
901 | fi |
---|
902 | |
---|
903 | typeset status |
---|
904 | |
---|
905 | # Only if we use rsync |
---|
906 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
907 | # |
---|
908 | #USUAL WAY |
---|
909 | rcp -r $1 ${STOREHOST}:$2 > out_rsync 2>&1 |
---|
910 | status=$? |
---|
911 | |
---|
912 | if [ ${status} -gt 0 ] ; then |
---|
913 | echo "IGCM_sys_Put_Dir : error." |
---|
914 | cat out_rsync |
---|
915 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
916 | else |
---|
917 | \rm out_rsync |
---|
918 | fi |
---|
919 | else |
---|
920 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
921 | fi |
---|
922 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
923 | } |
---|
924 | |
---|
925 | #D-#================================================== |
---|
926 | #D-function IGCM_sys_Get_Dir |
---|
927 | #D-* Purpose: Copy a complete directory from $(ARCHIVE) |
---|
928 | #D-* Examples: |
---|
929 | #D- |
---|
930 | function IGCM_sys_Get_Dir { |
---|
931 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
932 | if ( $DEBUG_sys ) ; then |
---|
933 | echo "IGCM_sys_Get_Dir :" $@ |
---|
934 | fi |
---|
935 | if [ $DRYRUN = 0 ]; then |
---|
936 | if [ ! -d ${1} ] ; then |
---|
937 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
938 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
939 | return |
---|
940 | fi |
---|
941 | |
---|
942 | typeset status |
---|
943 | |
---|
944 | #USUAL WAY |
---|
945 | rcp -rp ${STOREHOST}:$1 $2 > out_rsync 2>&1 |
---|
946 | status=$? |
---|
947 | |
---|
948 | if [ ${status} -gt 0 ] ; then |
---|
949 | echo "IGCM_sys_Get_Dir : error." |
---|
950 | cat out_rsync |
---|
951 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
952 | fi |
---|
953 | else |
---|
954 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
955 | fi |
---|
956 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
957 | } |
---|
958 | |
---|
959 | #==================================================== |
---|
960 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
961 | if ( $MirrorlibIGCM ) ; then |
---|
962 | IGCM_sys_Mirror_libIGCM |
---|
963 | fi |
---|
964 | |
---|
965 | #D-#================================================== |
---|
966 | #D-function IGCM_sys_Put_Rest |
---|
967 | #D-* Purpose: Put computied restarts on $(ARCHIVE). |
---|
968 | #D- File and target directory must exist. |
---|
969 | #D-* Examples: |
---|
970 | #D- |
---|
971 | function IGCM_sys_Put_Rest { |
---|
972 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
973 | if ( $DEBUG_sys ) ; then |
---|
974 | echo "IGCM_sys_Put_Rest :" $@ |
---|
975 | fi |
---|
976 | if [ $DRYRUN = 0 ]; then |
---|
977 | if [ ! -f ${1} ] ; then |
---|
978 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
979 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
980 | fi |
---|
981 | |
---|
982 | typeset status |
---|
983 | # |
---|
984 | if [ X${JobType} = XRUN ] ; then |
---|
985 | IGCM_sys_Chmod 444 ${1} |
---|
986 | fi |
---|
987 | # |
---|
988 | # Only if we use rsync |
---|
989 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
990 | # |
---|
991 | #USUAL WAY |
---|
992 | mfput $1 $2 > out_rsync 2>&1 |
---|
993 | status=$? |
---|
994 | |
---|
995 | # #RSYNC WITH NETWORK RSH CALL |
---|
996 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
997 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
998 | |
---|
999 | # #RSYNC WITH NFS USE |
---|
1000 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
1001 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
1002 | |
---|
1003 | # status=$? |
---|
1004 | # IGCM_sys_Rsync_out $status |
---|
1005 | |
---|
1006 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
1007 | # (( status=status+$? )) |
---|
1008 | |
---|
1009 | if [ ${status} -gt 0 ] ; then |
---|
1010 | echo "IGCM_sys_Put_Rest : error." |
---|
1011 | cat out_rsync |
---|
1012 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
1013 | else |
---|
1014 | \rm out_rsync |
---|
1015 | fi |
---|
1016 | else |
---|
1017 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1018 | fi |
---|
1019 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
1020 | } |
---|
1021 | |
---|
1022 | #D-#================================================== |
---|
1023 | #D-function IGCM_sys_PutBuffer_Rest |
---|
1024 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
1025 | #D- File and target directory must exist. |
---|
1026 | #D-* Examples: |
---|
1027 | #D- |
---|
1028 | function IGCM_sys_PutBuffer_Rest { |
---|
1029 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
1030 | if ( $DEBUG_sys ) ; then |
---|
1031 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
1032 | fi |
---|
1033 | if [ $DRYRUN = 0 ]; then |
---|
1034 | if [ ! -f ${1} ] ; then |
---|
1035 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
1036 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
1037 | fi |
---|
1038 | |
---|
1039 | typeset status |
---|
1040 | # |
---|
1041 | if [ X${JobType} = XRUN ] ; then |
---|
1042 | IGCM_sys_Chmod 444 ${1} |
---|
1043 | fi |
---|
1044 | |
---|
1045 | # |
---|
1046 | # USUAL WAY |
---|
1047 | \cp $1 $2 > out_rsync 2>&1 |
---|
1048 | status=$? |
---|
1049 | |
---|
1050 | if [ ${status} -gt 0 ] ; then |
---|
1051 | echo "IGCM_sys_PutBuffer_Rest : error." |
---|
1052 | cat out_rsync |
---|
1053 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
1054 | else |
---|
1055 | \rm out_rsync |
---|
1056 | fi |
---|
1057 | else |
---|
1058 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1059 | fi |
---|
1060 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
1061 | } |
---|
1062 | |
---|
1063 | #D-#================================================== |
---|
1064 | #D-function IGCM_sys_Put_Out |
---|
1065 | #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly |
---|
1066 | #D-* Examples: |
---|
1067 | #D- |
---|
1068 | function IGCM_sys_Put_Out { |
---|
1069 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
1070 | if ( $DEBUG_sys ) ; then |
---|
1071 | echo "IGCM_sys_Put_Out :" $@ |
---|
1072 | fi |
---|
1073 | if [ $DRYRUN = 0 ]; then |
---|
1074 | if [ ! -f ${1} ] ; then |
---|
1075 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
1076 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
1077 | return 1 |
---|
1078 | fi |
---|
1079 | |
---|
1080 | typeset status |
---|
1081 | # |
---|
1082 | if [ X${JobType} = XRUN ] ; then |
---|
1083 | if [ X${3} = X ] ; then |
---|
1084 | IGCM_sys_Chmod 444 ${1} |
---|
1085 | fi |
---|
1086 | fi |
---|
1087 | # |
---|
1088 | # Only if we use rsync |
---|
1089 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
1090 | # |
---|
1091 | #USUAL WAY |
---|
1092 | mfput $1 $2 > out_rsync 2>&1 |
---|
1093 | status=$? |
---|
1094 | |
---|
1095 | # #RSYNC WITH NETWORK RSH CALL |
---|
1096 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
1097 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
1098 | |
---|
1099 | # #RSYNC WITH NFS USE |
---|
1100 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
1101 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
1102 | |
---|
1103 | # status=$? |
---|
1104 | # IGCM_sys_Rsync_out $status |
---|
1105 | |
---|
1106 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
1107 | # (( status=status+$? )) |
---|
1108 | |
---|
1109 | if [ ${status} -gt 0 ] ; then |
---|
1110 | echo "IGCM_sys_Put_Out : error." |
---|
1111 | cat out_rsync |
---|
1112 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
1113 | else |
---|
1114 | \rm out_rsync |
---|
1115 | fi |
---|
1116 | IGCM_sys_Rm out_rsync |
---|
1117 | else |
---|
1118 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1119 | fi |
---|
1120 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
1121 | return 0 |
---|
1122 | } |
---|
1123 | |
---|
1124 | #D-#================================================== |
---|
1125 | #D-function IGCM_sys_PutBuffer_Out |
---|
1126 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
1127 | #D-* Examples: |
---|
1128 | #D- |
---|
1129 | function IGCM_sys_PutBuffer_Out { |
---|
1130 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
1131 | if ( $DEBUG_sys ) ; then |
---|
1132 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
1133 | fi |
---|
1134 | if [ $DRYRUN = 0 ]; then |
---|
1135 | if [ ! -f ${1} ] ; then |
---|
1136 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
1137 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
1138 | return 1 |
---|
1139 | fi |
---|
1140 | # |
---|
1141 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
1142 | # |
---|
1143 | typeset status |
---|
1144 | |
---|
1145 | if [ X${JobType} = XRUN ] ; then |
---|
1146 | if [ X${3} = X ] ; then |
---|
1147 | IGCM_sys_Chmod 444 ${1} |
---|
1148 | fi |
---|
1149 | fi |
---|
1150 | # |
---|
1151 | # USUAL WAY |
---|
1152 | \cp $1 $2 > out_rsync 2>&1 |
---|
1153 | status=$? |
---|
1154 | |
---|
1155 | if [ ${status} -gt 0 ] ; then |
---|
1156 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
1157 | cat out_rsync |
---|
1158 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
1159 | else |
---|
1160 | \rm out_rsync |
---|
1161 | fi |
---|
1162 | else |
---|
1163 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1164 | fi |
---|
1165 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
1166 | return 0 |
---|
1167 | } |
---|
1168 | |
---|
1169 | #D-#================================================== |
---|
1170 | #D-function IGCM_sys_Get |
---|
1171 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
1172 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
1173 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
1174 | function IGCM_sys_Get { |
---|
1175 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
1176 | |
---|
1177 | typeset DEST status dm_liste ifile target |
---|
1178 | |
---|
1179 | if ( $DEBUG_sys ) ; then |
---|
1180 | echo "IGCM_sys_Get :" $@ |
---|
1181 | fi |
---|
1182 | if [ $DRYRUN -le 2 ]; then |
---|
1183 | if [ X${1} = X'/l' ] ; then |
---|
1184 | # test if the first file is present in the old computation : |
---|
1185 | eval set +A dm_liste \${${2}} |
---|
1186 | else |
---|
1187 | dm_liste=${1} |
---|
1188 | fi |
---|
1189 | eval DEST=\${${#}} |
---|
1190 | |
---|
1191 | # test if the (first) file is present in the old computation : |
---|
1192 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
1193 | status=$? |
---|
1194 | if [ ${status} -gt 0 ] ; then |
---|
1195 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
1196 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
1197 | return |
---|
1198 | fi |
---|
1199 | |
---|
1200 | # SD : dm_liste is not suited for computing job |
---|
1201 | # because we change filename during transfert |
---|
1202 | # dm_liste is better suited for post-treatment |
---|
1203 | #dm_liste=" " |
---|
1204 | #(( ifile=1 )) |
---|
1205 | #while [ $ifile -lt $# ] ; do |
---|
1206 | # dm_liste=$( eval echo ${dm_liste} " "\${${ifile}} ) |
---|
1207 | # (( ifile = ifile + 1 )) |
---|
1208 | #done |
---|
1209 | #DEST=$( eval echo \${${#}} ) |
---|
1210 | |
---|
1211 | #USUAL WAY |
---|
1212 | mfget ${dm_liste[*]} ${DEST} > out_rsync 2>&1 |
---|
1213 | status=$? |
---|
1214 | |
---|
1215 | # #RSYNC WITH NETWORK RSH CALL |
---|
1216 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
1217 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
1218 | |
---|
1219 | # #RSYNC WITH NFS USE |
---|
1220 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
1221 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
1222 | |
---|
1223 | # status=$? |
---|
1224 | # IGCM_sys_Rsync_out $status |
---|
1225 | |
---|
1226 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
1227 | # (( status=status+$? )) |
---|
1228 | |
---|
1229 | if [ ${status} -gt 0 ] ; then |
---|
1230 | echo "IGCM_sys_Get : copy error." |
---|
1231 | cat out_rsync |
---|
1232 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
1233 | else |
---|
1234 | \rm out_rsync |
---|
1235 | fi |
---|
1236 | else |
---|
1237 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1238 | fi |
---|
1239 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
1240 | } |
---|
1241 | |
---|
1242 | #D-#================================================== |
---|
1243 | #D-function IGCM_sys_GetBuffer |
---|
1244 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
1245 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
1246 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
1247 | function IGCM_sys_GetBuffer { |
---|
1248 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
1249 | |
---|
1250 | typeset DEST status buf_liste ifile target file_work |
---|
1251 | |
---|
1252 | if ( $DEBUG_sys ) ; then |
---|
1253 | echo "IGCM_sys_GetBuffer :" $@ |
---|
1254 | fi |
---|
1255 | if [ $DRYRUN -le 2 ]; then |
---|
1256 | if [ X${1} = X'/l' ] ; then |
---|
1257 | # test if the first file is present in the old computation : |
---|
1258 | eval set +A buf_liste \${${2}} |
---|
1259 | else |
---|
1260 | eval set +A buf_liste ${1} |
---|
1261 | fi |
---|
1262 | eval DEST=\${${#}} |
---|
1263 | |
---|
1264 | #USUAL WAY |
---|
1265 | if [ X${1} = X'/l' ] ; then |
---|
1266 | (( status=0 )) |
---|
1267 | for target in ${buf_liste[*]} ; do |
---|
1268 | local_file=$( basename ${target} ) |
---|
1269 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
1270 | (( status = status + $? )) |
---|
1271 | done |
---|
1272 | else |
---|
1273 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
1274 | status=$? |
---|
1275 | fi |
---|
1276 | |
---|
1277 | if [ ${status} -gt 0 ] ; then |
---|
1278 | echo "IGCM_sys_GetBuffer : copy error." |
---|
1279 | cat out_rsync |
---|
1280 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
1281 | else |
---|
1282 | \rm out_rsync |
---|
1283 | fi |
---|
1284 | else |
---|
1285 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1286 | fi |
---|
1287 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
1288 | } |
---|
1289 | |
---|
1290 | ############################################################## A FINIR !! |
---|
1291 | |
---|
1292 | #D-#================================================== |
---|
1293 | #D-function IGCM_sys_GetDate_FichWork |
---|
1294 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
1295 | #D-* Examples: |
---|
1296 | #D- |
---|
1297 | function IGCM_sys_GetDate_FichWork { |
---|
1298 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
1299 | if ( $DEBUG_sys ) ; then |
---|
1300 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
1301 | fi |
---|
1302 | typeset dateF |
---|
1303 | set +A dateF -- $( rsh ${MASTER} -n /opt/freeware/bin/ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
1304 | eval ${2}=${dateF[5]} |
---|
1305 | |
---|
1306 | # donne la date filesys d'un fichier sur la machine work |
---|
1307 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
1308 | } |
---|
1309 | |
---|
1310 | #D-#================================================== |
---|
1311 | #D-function IGCM_sys_GetDate_FichArchive |
---|
1312 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
1313 | #D-* Examples: |
---|
1314 | #D- |
---|
1315 | function IGCM_sys_GetDate_FichArchive { |
---|
1316 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
1317 | if ( $DEBUG_sys ) ; then |
---|
1318 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
1319 | fi |
---|
1320 | typeset dateF |
---|
1321 | set +A dateF -- $( rsh ${STOREHOST} -n ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
1322 | eval ${2}=${dateF[5]} |
---|
1323 | |
---|
1324 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
1325 | } |
---|
1326 | |
---|
1327 | ############################################################## |
---|
1328 | # REBUILD OPERATOR |
---|
1329 | |
---|
1330 | function IGCM_sys_rebuild { |
---|
1331 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
1332 | if ( $DEBUG_sys ) ; then |
---|
1333 | echo "IGCM_sys_rebuild :" $@ |
---|
1334 | fi |
---|
1335 | /homegpfs/rech/psl/rpsl035/bin/rebuild -f -o $@ |
---|
1336 | if [ $? -gt 0 ] ; then |
---|
1337 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
1338 | IGCM_debug_Exit "rebuild" |
---|
1339 | fi |
---|
1340 | |
---|
1341 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
1342 | } |
---|
1343 | |
---|
1344 | function IGCM_sys_rebuild_station { |
---|
1345 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
1346 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
1347 | if ( $DEBUG_sys ) ; then |
---|
1348 | echo "IGCM_sys_rebuild_station :" $@ |
---|
1349 | fi |
---|
1350 | list_opt=$@ |
---|
1351 | |
---|
1352 | # Invert Axis : t,x -> x,t |
---|
1353 | # t,pres,x -> x,t,pres |
---|
1354 | # So that we can concatenate along x |
---|
1355 | i=0 |
---|
1356 | for file_in in ${list_opt} ; do |
---|
1357 | (( i = i + 1)) |
---|
1358 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
1359 | prefix_invert=$( basename ${file_in} .nc ) |
---|
1360 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
1361 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
1362 | done |
---|
1363 | |
---|
1364 | # Concatenate |
---|
1365 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
1366 | |
---|
1367 | # Re-ivert file |
---|
1368 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
1369 | |
---|
1370 | # Station re-ordering is too expansive to be run within libICGM |
---|
1371 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
1372 | # This re-ordering must be done "in memory" by the cmorization process |
---|
1373 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
1374 | # BEGIN reordering |
---|
1375 | |
---|
1376 | # Only LMDZ text output contains the exact ordering of the station. |
---|
1377 | # We isolate this in the code below: |
---|
1378 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
1379 | # 0 54 27.49999999999999 67.18309859154928 |
---|
1380 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
1381 | # 0 79 12.49999999999999 78.59154929577466 |
---|
1382 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
1383 | # 0 117 130.0000000000000 70.98591549295774 |
---|
1384 | # 0 118 110.0000000000000 87.46478873239437 |
---|
1385 | # 1 40 4.999999999999995 51.97183098591550 |
---|
1386 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
1387 | # typeset -Z4 j4 |
---|
1388 | # typeset -Z3 j3 |
---|
1389 | |
---|
1390 | # unset list_opt |
---|
1391 | # set +A list_opt $@ |
---|
1392 | |
---|
1393 | # Filename after rebuild |
---|
1394 | # file_out=${list_opt[0]} |
---|
1395 | # Prefix of output files |
---|
1396 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
1397 | # Number of procs |
---|
1398 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
1399 | |
---|
1400 | # iProc=0 |
---|
1401 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
1402 | # Array containing Station as a number |
---|
1403 | # unset proc_stn |
---|
1404 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
1405 | # Number of stations produced by processor proc |
---|
1406 | # stationLast=${#proc_stn[*]} |
---|
1407 | # Proc number on 4 digits |
---|
1408 | # j4=${iProc} |
---|
1409 | # Init |
---|
1410 | # iStation=0 |
---|
1411 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
1412 | # Station number on 3 digits |
---|
1413 | # j3=${proc_stn[${iStation}]} |
---|
1414 | # Extract station |
---|
1415 | # Invert Axis : t,x -> x,t |
---|
1416 | # t,pres,x -> x,t,pres |
---|
1417 | # So that we can concatenate along x |
---|
1418 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
1419 | # (( iStation = iStation + 1 )) |
---|
1420 | # done |
---|
1421 | # (( iProc = iProc + 1 )) |
---|
1422 | # done |
---|
1423 | |
---|
1424 | # Concatenate all station along x |
---|
1425 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
1426 | |
---|
1427 | # Re-invert file |
---|
1428 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
1429 | |
---|
1430 | # END reordering |
---|
1431 | |
---|
1432 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
1433 | } |
---|
1434 | |
---|
1435 | ############################################################ |
---|
1436 | # Activate Running Environnment Variables |
---|
1437 | |
---|
1438 | function IGCM_sys_activ_variables { |
---|
1439 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
1440 | if ( $DEBUG_sys ) ; then |
---|
1441 | echo "IGCM_sys_activ_variables " |
---|
1442 | fi |
---|
1443 | |
---|
1444 | # -------------------------------------------------------------------- |
---|
1445 | #D- OpenMP thread memory specifications : only one time |
---|
1446 | # -------------------------------------------------------------------- |
---|
1447 | echo $XLSMPOPTS | grep stack=524288000 1>/dev/null 2>&1 || export XLSMPOPTS=$XLSMPOPTS:stack=524288000 |
---|
1448 | |
---|
1449 | # -------------------------------------------------------------------- |
---|
1450 | #D- Other specifications |
---|
1451 | # -------------------------------------------------------------------- |
---|
1452 | |
---|
1453 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
1454 | |
---|
1455 | } |
---|
1456 | |
---|
1457 | ############################################################ |
---|
1458 | # Desactivate Running Environnment Variables |
---|
1459 | |
---|
1460 | function IGCM_sys_desactiv_variables { |
---|
1461 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
1462 | if ( $DEBUG_sys ) ; then |
---|
1463 | echo "IGCM_sys_desactiv_variables " |
---|
1464 | fi |
---|
1465 | # -------------------------------------------------------------------- |
---|
1466 | #D- MPI specifications |
---|
1467 | # -------------------------------------------------------------------- |
---|
1468 | |
---|
1469 | # -------------------------------------------------------------------- |
---|
1470 | #D- Other specifications |
---|
1471 | # -------------------------------------------------------------------- |
---|
1472 | |
---|
1473 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
1474 | |
---|
1475 | } |
---|
1476 | |
---|
1477 | ############################################################ |
---|
1478 | # Build MPI/OMP scripts |
---|
1479 | function IGCM_sys_build_execution_scripts |
---|
1480 | { |
---|
1481 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
1482 | if ( $DEBUG_sys ) ; then |
---|
1483 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
1484 | fi |
---|
1485 | |
---|
1486 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
1487 | |
---|
1488 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
1489 | IGCM_debug_Exit "IGCM_sys_vargas build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
1490 | fi |
---|
1491 | |
---|
1492 | if ( ${OK_PARA_MPMD} ) ; then |
---|
1493 | |
---|
1494 | if [ -f run_file ] ; then |
---|
1495 | IGCM_sys_Rm -f run_file |
---|
1496 | fi |
---|
1497 | touch run_file |
---|
1498 | |
---|
1499 | if ( ${OK_PARA_OMP} ) ; then |
---|
1500 | # NEW : 2 Noeuds |
---|
1501 | # @ task_geometry={(0)(1,2,3)} |
---|
1502 | # Nombre de processus demandes |
---|
1503 | echo "Job_${config_UserChoices_JobName} includes task_geometry = \c" |
---|
1504 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" |
---|
1505 | echo "Job_${config_UserChoices_JobName} includes task_geometry with NbNodes = \c" |
---|
1506 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c |
---|
1507 | NbNodes_Job=$(( $( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c ) - 1 )) |
---|
1508 | |
---|
1509 | if [ ${NbNodes_Job} -eq 0 ] ; then |
---|
1510 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no task_geometry defined with OpenMP run." |
---|
1511 | exit 1 |
---|
1512 | fi |
---|
1513 | else |
---|
1514 | |
---|
1515 | # OLD : |
---|
1516 | # @ total_tasks = 3 |
---|
1517 | # @ environment = "BATCH_NUM_PROC_TOT=3" |
---|
1518 | # Pas d OpenMP |
---|
1519 | # @ resources = ConsumableCpus(1) |
---|
1520 | |
---|
1521 | echo "Job_${config_UserChoices_JobName} includes total_tasks = \c" |
---|
1522 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" |
---|
1523 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" ) |
---|
1524 | NbProc_Job=${NbProc_Job:=0} |
---|
1525 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
1526 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no total_tasks defined with MPI only run." |
---|
1527 | exit 1 |
---|
1528 | fi |
---|
1529 | if ( $( egrep '^# *@ *resources *= *ConsumableCpus\(1\)' ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} >/dev/null 2>&1 ) ) ; then |
---|
1530 | IGCM_debug_Print 2 "ressources = ConsumableCpus(1) line found into Job_${config_UserChoices_JobName}" |
---|
1531 | else |
---|
1532 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources = line not found. Job should include resources = ConsumableCpus(1) " |
---|
1533 | exit 1 |
---|
1534 | fi |
---|
1535 | fi |
---|
1536 | |
---|
1537 | # run_file construction |
---|
1538 | |
---|
1539 | # Then first loop on the components for the coupler ie oasis |
---|
1540 | |
---|
1541 | ### the coupler ie oasis must be the first one |
---|
1542 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1543 | |
---|
1544 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1545 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1546 | |
---|
1547 | # for CPL component only |
---|
1548 | if [ "X${comp}" = "XCPL" ] ; then |
---|
1549 | |
---|
1550 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
1551 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1552 | |
---|
1553 | if ( ${OK_PARA_MPI} ) ; then |
---|
1554 | |
---|
1555 | (( mpi_count = 1 )) |
---|
1556 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
1557 | if ( ${OK_PARA_OMP} ) ; then |
---|
1558 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
1559 | else |
---|
1560 | echo "./${ExeNameOut}" >> run_file |
---|
1561 | fi |
---|
1562 | (( mpi_count = mpi_count + 1 )) |
---|
1563 | done |
---|
1564 | else |
---|
1565 | if ( ${OK_PARA_OMP} ) ; then |
---|
1566 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
1567 | else |
---|
1568 | echo "./${ExeNameOut} " >> run_file |
---|
1569 | fi |
---|
1570 | fi |
---|
1571 | fi |
---|
1572 | done |
---|
1573 | |
---|
1574 | # Then second loop on the components |
---|
1575 | |
---|
1576 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1577 | |
---|
1578 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1579 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1580 | |
---|
1581 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
1582 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
1583 | |
---|
1584 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
1585 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1586 | |
---|
1587 | if ( ${OK_PARA_MPI} ) ; then |
---|
1588 | |
---|
1589 | (( mpi_count = 1 )) |
---|
1590 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
1591 | if ( ${OK_PARA_OMP} ) ; then |
---|
1592 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
1593 | else |
---|
1594 | echo "./${ExeNameOut}" >> run_file |
---|
1595 | fi |
---|
1596 | (( mpi_count = mpi_count + 1 )) |
---|
1597 | done |
---|
1598 | else |
---|
1599 | if ( ${OK_PARA_OMP} ) ; then |
---|
1600 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
1601 | else |
---|
1602 | # to be tested : no MPI only OpenMP into MPMD mode |
---|
1603 | echo "./${ExeNameOut} " >> run_file |
---|
1604 | fi |
---|
1605 | fi |
---|
1606 | fi |
---|
1607 | done |
---|
1608 | |
---|
1609 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
1610 | |
---|
1611 | IGCM_sys_Chmod u+x run_file |
---|
1612 | if ( $DEBUG_sys ) ; then |
---|
1613 | echo "run_file contains : " |
---|
1614 | cat run_file |
---|
1615 | fi |
---|
1616 | |
---|
1617 | else # Only one executable. launch it. |
---|
1618 | |
---|
1619 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1620 | |
---|
1621 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1622 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1623 | |
---|
1624 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
1625 | EXECUTION="time ./${ExeNameOut}" |
---|
1626 | fi |
---|
1627 | |
---|
1628 | done |
---|
1629 | |
---|
1630 | fi |
---|
1631 | |
---|
1632 | IGCM_debug_Print 1 "sys vargas : execution command is " |
---|
1633 | IGCM_debug_Print 1 "$EXECUTION" |
---|
1634 | |
---|
1635 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
1636 | } |
---|
1637 | |
---|
1638 | function IGCM_sys_build_run_file { |
---|
1639 | |
---|
1640 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
1641 | |
---|
1642 | } |
---|
1643 | |
---|
1644 | ############################################################ |
---|
1645 | # Check of space available on temporary filesytems |
---|
1646 | function IGCM_sys_check_quota { |
---|
1647 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
1648 | if ( $DEBUG_sys ) ; then |
---|
1649 | echo "IGCM_sys_check_quota " |
---|
1650 | fi |
---|
1651 | # Limit of quota (in %) |
---|
1652 | limit_quota=90 |
---|
1653 | # Check of the volume |
---|
1654 | volume_quota=$(quota_u -w | grep 'Quota soft' | awk '{print $5}') |
---|
1655 | if [ ! X${volume_quota} = X ] ; then |
---|
1656 | quota_volume=${volume_quota%%\%} |
---|
1657 | # echo $quota_volume |
---|
1658 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
1659 | IGCM_debug_Print 1 "Please, check your quota of volume on workgpfs" |
---|
1660 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
1661 | IGCM_debug_Print 1 "Use the quota_u -w command to check" |
---|
1662 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
1663 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
1664 | IGCM_debug_Verif_Exit |
---|
1665 | fi |
---|
1666 | |
---|
1667 | fi |
---|
1668 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
1669 | } |
---|