#!/bin/ksh #************************************************************** # Author: Sebastien Denvil # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr # $Revision:: $ Revision of last commit # $Author:: $ Author of last commit # $Date:: $ Date of last commit # IPSL (2006) # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC # #************************************************************** #========================================================= # The documentation of this file can be automatically generated # if you use the prefix #D- for comments to be extracted. # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" #========================================================= #D-#================================================== #D-LibIGCM_sys for Ulam #D-#================================================== #D- #D- This ksh library if a layer under some usefull #D-environment variables and shell commands. #D-All those definitions depend on host particularities. #D-It manages a stack mechanism and test validity of operations. #D-All function described bellow must be prefixed by IGCM_sys. #==================================================== # libIGCM_sys PARAMETERS #==================================================== #==================================================== # set DEBUG_sys to true to output calls of function typeset -r DEBUG_sys=${DEBUG_sys:=true} #==================================================== # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) typeset -r DRYRUN=${DRYRUN:=0} # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! # ------------------------------------------------------------------------------------- # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | # | | Cp/Exe param files | | Chmod | | # | | Qsub | | | | # ------------------------------------------------------------------------------------- # | 0 | yes | yes | yes | yes | # ------------------------------------------------------------------------------------- # | 1 | yes | yes | yes | no | # ------------------------------------------------------------------------------------- # | 2 | yes | yes | no | no | # ------------------------------------------------------------------------------------- # | 3 | yes | no | no | no | # ------------------------------------------------------------------------------------- #===================================================== # Global Variables : #===================================================== # Language : "fr" or "en" typeset -r MYLANG="fr" #===================================================== # Host and user names # $hostname ou hostname typeset HOST=${HOST:=$( hostname )} # $username ou whoami typeset LOGIN=${LOGIN:=$( whoami )} #D- #D-#================================================== #D-Program used in libIGCM #D-#================================================== # rsync with path typeset -r RSYNC=/usr/bin/rsync # RSYNC_opt args to rsync typeset -r RSYNC_opt="-Lt -v" # RSYNC_opt args to "remote rsync" # ie storage filesystem typeset -r RHOST=gaya.idris.fr typeset -r REMOTE_RSYNC=/u/rech/ces/rces452/RSYNC/bin/rsync #==================================================== # Set environment tools (ferret, nco, cdo) #==================================================== . /home/rech/psl/rpsl035/.atlas_env_ulam_bash #==================================================== # Host specific DIRECTORIES #==================================================== #==================================================== #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) typeset -r R_EXE="${MODIPSL}/bin" #==================================================== #- SUBMIT_DIR : submission dir typeset SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} #==================================================== #- IN typeset -r R_IN=${R_IN:=/u/rech/psl/rpsl035/IGCM} typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/u/rech/psl/rpsl376} #==================================================== #- ARCHIVE # modified 17/10/2011 /u to be used for file stored on gaya if (tty -s ) then typeset -r ARCHIVE=${HOMEGAYA} else typeset -r ARCHIVE=$(echo ${HOMEGAYA}|sed 's,/homegaya/,/u/',) fi #==================================================== #- OUT typeset -r R_OUT=${ARCHIVE}/IGCM_OUT #==================================================== #- R_FIG (hosting figures : monitoring and atlas, and/or small files) typeset -r R_FIG=${ARCHIVE}/IGCM_OUT #==================================================== #- R_BUF Buffer to pack files stored on Master typeset -r R_BUF=${WORKDIR}/IGCM_OUT #==================================================== #- OUT_POST typeset -r R_OUT_POST=${WORKDIR}/IGCM_OUT #==================================================== #- RUN_DIR_PATH : Temporary working directory (=> TMP) typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} #==================================================== #- Max number of arguments passed to nco operator or demigration command UNIX_MAX_LIMIT=120 #D-#================================================== #D-function IGCM_sys_ChangeArchive #D-* Purpose: Just a dummy call on this machine #D-* Examples: #D- function IGCM_sys_ChangeArchive { IGCM_debug_Print 1 " dummy function : IGCM_sys_ChangeArchive " } #D-#================================================== #D-function IGCM_sys_RshMaster #D-* Purpose: Master rsh command #D-* Examples: #D- function IGCM_sys_RshMaster { #set -vx IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ rsh ${MASTER} exec /bin/ksh <<-EOF export libIGCM=${libIGCM_SX} export DEBUG_debug=${DEBUG_debug} . ${libIGCM_SX}/libIGCM_debug/libIGCM_debug.ksh . ${libIGCM_SX}/libIGCM_card/libIGCM_card.ksh ${@} EOF if [ $? -gt 0 ] ; then echo "IGCM_sys_RshMaster : erreur." IGCM_debug_Exit "IGCM_sys_RshMaster" fi IGCM_debug_PopStack "IGCM_sys_RshMaster" } #D-#================================================== #D-function IGCM_sys_RshArchive #D-* Purpose: Archive rsh command #D-* Examples: #D- function IGCM_sys_RshArchive { IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ /bin/ksh <<-EOF ${@} EOF if [ $? -gt 0 ] ; then echo "IGCM_sys_RshArchive : erreur." IGCM_debug_Exit "IGCM_sys_RshArchive" fi IGCM_debug_PopStack "IGCM_sys_RshArchive" } #D-#================================================== #D-function IGCM_sys_RshPost #D-* Purpose: Master rsh command #D-* Examples: #D- function IGCM_sys_RshPost { IGCM_debug_PushStack "IGCM_sys_RshPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_RshPost :" $@ fi /bin/ksh ${@} if [ $? -gt 0 ] ; then echo "IGCM_sys_RshPost : erreur." IGCM_debug_Exit "IGCM_sys_RshPost" fi IGCM_debug_PopStack "IGCM_sys_RshPost" } #D-#================================================== #D-function IGCM_sys_SendMail #D-* Purpose: Send mail when simulation is over #D-* Examples: #D- function IGCM_sys_SendMail { IGCM_debug_PushStack "IGCM_sys_SendMailPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_SendMail :" $@ fi if ( ${ExitFlag} ) ; then status=failed else status=completed fi cat << END_MAIL > job_end.mail Dear ${LOGIN}, Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. Job started : ${DateBegin} Job ended : ${DateEnd} Output files are available in ${R_SAVE} Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} END_MAIL if [ ! -z ${config_UserChoices_MailName} ] ; then mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail elif [ -f ~/.forward ] ; then mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail fi if [ $? -gt 0 ] ; then echo "IGCM_sys_SendMail : erreur." IGCM_debug_Exit "IGCM_sys_SendMail" fi IGCM_debug_PopStack "IGCM_sys_SendMail" } #D-#================================================== #D-function IGCM_sys_Mkdir #D-* Purpose: Master locale mkdir command #D-* Examples: #D- function IGCM_sys_Mkdir { IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mkdir :" $@ fi if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Mkdir : erreur." IGCM_debug_Exit "IGCM_sys_Mkdir" fi fi # vérification : if [ ! -d ${1} ] ; then echo "IGCM_sys_Mkdir : erreur." IGCM_debug_Exit "IGCM_sys_Mkdir" fi IGCM_debug_PopStack "IGCM_sys_Mkdir" } #D-#================================================== #D-function IGCM_sys_MkdirArchive #D-* Purpose: Mkdir on Archive #D-* Examples: #D- function IGCM_sys_MkdirArchive { IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_MkdirArchive :" $@ fi #- creation de repertoire sur le serveur fichier if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_MkdirArchive : erreur." IGCM_debug_Exit "IGCM_sys_MkdirArchive" fi fi IGCM_debug_PopStack "IGCM_sys_MkdirArchive" } #D-#================================================== #D-function IGCM_sys_MkdirWork #D-* Purpose: Mkdir on Work #D-* Examples: #D- function IGCM_sys_MkdirWork { IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_MkdirWork :" $@ fi #- creation de repertoire sur le serveur fichier if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_MkdirWork : erreur." IGCM_debug_Exit "IGCM_sys_MkdirWork" fi fi IGCM_debug_PopStack "IGCM_sys_MkdirWork" } #D-#================================================== #D-function IGCM_sys_Cd #D-* Purpose: master cd command #D-* Examples: #D- function IGCM_sys_Cd { IGCM_debug_PushStack "IGCM_sys_Cd" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Cd :" $@ fi \cd $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Cd : erreur." IGCM_debug_Exit "IGCM_sys_Cd" fi IGCM_debug_PopStack "IGCM_sys_Cd" } #D-#================================================== #D-function IGCM_sys_Chmod #D-* Purpose: Chmod #D-* Examples: #D- function IGCM_sys_Chmod { IGCM_debug_PushStack "IGCM_sys_Chmod" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Chmod :" $@ fi if [ $DRYRUN -le 1 ]; then \chmod $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_Chmod : erreur." IGCM_debug_Exit "IGCM_sys_Chmod" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Chmod" } #D-#================================================== #D-function IGCM_sys_FileSize #D-* Purpose: Filesize #D-* Examples: #D- function IGCM_sys_FileSize { IGCM_debug_PushStack "IGCM_sys_FileSize" $@ typeset sizeF set +A sizeF -- $( ls -la ${1} ) if [ $? -gt 0 ] ; then IGCM_debug_Exit "IGCM_sys_FileSize" fi eval ${2}=${sizeF[4]} IGCM_debug_PopStack "IGCM_sys_FileSize" } #D-#================================================== #D-function IGCM_sys_TestDir #D-* Purpose: Test Directory that must exists #D-* Examples: #D- function IGCM_sys_TestDir { IGCM_debug_PushStack "IGCM_sys_TestDir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestDir :" $@ fi typeset ExistFlag ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestDir" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_TestDirArchive #D-* Purpose: Test Directory that must exists on Archive #D-* Examples: #D- function IGCM_sys_TestDirArchive { IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestDirArchive :" $@ fi typeset ExistFlag DirNameToTest # modified 17/10/2011 /u is not known on ulam, use /homegaya instead to test dir locally on ulam DirNameToTest=$(echo $1 | sed 's,/u/,/homegaya/,') ExistFlag=$( [ -d ${DirNameToTest} ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestDirArchive" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_TestFileArchive #D-* Purpose: Test file that must NOT EXISTS on Archive #D-* Examples: #D- function IGCM_sys_TestFileArchive { IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ typeset ExistFlag FileNameToTest # modified 17/10/2011 /u is not known on ulam, use /homegaya instead to test dir locally on ulam FileNameToTest=$(echo $1 | sed 's,/u/,/homegaya/,') ExistFlag=$( IGCM_sys_RshArchive "[ -f ${FileNameToTest} ] && echo 0 || echo 1" ) IGCM_debug_PopStack "IGCM_sys_TestFileArchive" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_CountFileArchive #D-* Purpose: Count files on Archive filesystem #D-* Examples: #D- function IGCM_sys_CountFileArchive { IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" if [ $? -gt 0 ] ; then echo "IGCM_sys_CountFileArchive : erreur." fi IGCM_debug_PopStack "IGCM_sys_CountFileArchive" } #D-#================================================== #D-function IGCM_sys_Tree #D-* Purpose: Tree directories with files on ${ARCHIVE} #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} #D- function IGCM_sys_Tree { IGCM_debug_PushStack "IGCM_sys_Tree" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Tree :" $@ fi \mfls -r $@ IGCM_debug_PopStack "IGCM_sys_Tree" } #D-#================================================== #D-function IGCM_sys_Tar #D-* Purpose: master un-tar command #D-* Examples: #D- function IGCM_sys_Tar { IGCM_debug_PushStack "IGCM_sys_Tar" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Tar :" $@ fi \tar cvf $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_Tar : erreur." IGCM_debug_Exit "IGCM_sys_Tar" fi \tar tvf $1 IGCM_debug_PopStack "IGCM_sys_Tar" } #D-#================================================== #D-function IGCM_sys_UnTar #D-* Purpose: master un-tar command #D-* Examples: #D- function IGCM_sys_UnTar { IGCM_debug_PushStack "IGCM_sys_UnTar" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_UnTar :" $@ fi \tar xvf $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_UnTar : erreur." IGCM_debug_Exit "IGCM_sys_UnTar" fi IGCM_debug_PopStack "IGCM_sys_UnTar" } #D-#================================================== #D-function IGCM_sys_QsubPost #D-* Purpose: Qsub new job on scalaire #D-* Examples: #D- function IGCM_sys_QsubPost { IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_QsubPost :" $@ fi cd ${POST_DIR} /opt/ibmll/LoadL/full/bin/llsubmit ${libIGCM}/$1.job cd - if [ $? -gt 0 ] ; then echo "IGCM_sys_QsubPost : erreur " $@ IGCM_debug_Exit "IGCM_sys_QsubPost" fi IGCM_debug_PopStack "IGCM_sys_QsubPost" } #D-************************* #D- File transfer functions #D-************************* #D- #D-#================================================== #D-function IGCM_sys_Rsync_out #D-* Purpose: treat return val of rsync #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync #D- Error values and explanations can depend on your system version. function IGCM_sys_Rsync_out { status=$1 if [ ! $status ] ; then echo "rsync error !" fi if [ $MYLANG = "fr" ]; then case $status in 0) return ;; 1) echo "Erreur de rsync ; RERR_SYNTAX : " echo "Erreur de syntaxe ou d'utilisation." return;; 2) echo "Erreur de rsync ; RERR_PROTOCOL : " echo "Incompatibilité de protocole." return;; 3) echo "Erreur de rsync ; RERR_FILESELECT 3" echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" echo "répertoires" return;; 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" echo "Action demandée non supportée : une tentative de manipulation de" echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" echo "été faite ; ou une option qui est supportée par le client mais" echo "pas par le serveur a été spécifiée." return;; 10) echo "Erreur de rsync ; RERR_SOCKETIO" echo "Erreur dans le socket d'entrée sortie" return;; 11) echo "Erreur de rsync ; RERR_FILEIO" echo "Erreur d'entrée sortie fichier" return;; 12) echo "Erreur de rsync ; RERR_STREAMIO" echo "Erreur dans flux de donnée du protocole rsync" return;; 13) echo "Erreur de rsync ; RERR_MESSAGEIO" echo "Erreur avec les diagnostics du programme" return;; 14) echo "Erreur de rsync ; RERR_IPC" echo "Erreur dans le code IPC" return;; 20) echo "Erreur de rsync ; RERR_SIGNAL" echo "SIGUSR1 ou SIGINT reçu" return;; 21) echo "Erreur de rsync ; RERR_WAITCHILD" echo "Une erreur retournée par waitpid()" return;; 22) echo "Erreur de rsync ; RERR_MALLOC" echo "Erreur lors de l'allocation des tampons de mémoire de coeur" return;; 23) echo "" echo "Erreur fichier inexistant" return;; 30) echo "Erreur de rsync ; RERR_TIMEOUT" echo "Temps d'attente écoulé dans l'envoi/réception de données" return;; *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status return;; esac elif [ $MYLANG = "en" ] ; then case $status in 0) return;; 1) echo "rsync error : Syntax or usage error " return;; 2) echo "rsync error : Protocol incompatibility " return;; 3) echo "rsync error : Errors selecting input/output files, dirs" return;; 4) echo "rsync error : Requested action not supported: an attempt" echo "was made to manipulate 64-bit files on a platform that cannot support" echo "them; or an option was specified that is supported by the client and" echo "not by the server." return;; 5) echo "rsync error : Error starting client-server protocol" return;; 10) echo "rsync error : Error in socket I/O " return;; 11) echo "rsync error : Error in file I/O " return;; 12) echo "rsync error : Error in rsync protocol data stream " return;; 13) echo "rsync error : Errors with program diagnostics " return;; 14) echo "rsync error : Error in IPC code " return;; 20) echo "rsync error : Received SIGUSR1 or SIGINT " return;; 21) echo "rsync error : Some error returned by waitpid() " return;; 22) echo "rsync error : Error allocating core memory buffers " return;; 23) echo "rsync error : Partial transfer due to error" return;; 24) echo "rsync error : Partial transfer due to vanished source files" return;; 30) echo "rsync error : Timeout in data send/receive " return;; *) echo "rsync error : return code of rsync unknown :" $status return;; esac else echo "unknown language $MYLANG." return fi } #D-#================================================== #D-function IGCM_sys_Cp #D-* Purpose: generic cp #D-* Examples: #D- function IGCM_sys_Cp { IGCM_debug_PushStack "IGCM_sys_Cp" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Cp :" $@ fi typeset status echo cp $@ > out_rsync 2>&1 \cp $@ >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Cp : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Cp" fi IGCM_debug_PopStack "IGCM_sys_Cp" } #D-#================================================== #D-function IGCM_sys_Rm #D-* Purpose: generic rm #D-* Examples: #D- function IGCM_sys_Rm { IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Rm :" $@ fi typeset status echo rm $@ > out_rsync 2>&1 \rm $@ >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Rm : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Rm" fi IGCM_debug_PopStack "IGCM_sys_Rm" } #D-#================================================== #D-function IGCM_sys_RmRunDir #D-* Purpose: rm tmpdir (dummy function most of the time batch #D- scheduler will do the job) #D-* Examples: #D- function IGCM_sys_RmRunDir { IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_RmRunDir :" $@ echo "Dummy call, let the scheduler do that." fi IGCM_debug_PopStack "IGCM_sys_RmRunDir" } #D-#================================================== #D-function IGCM_sys_Mv #D-* Purpose: generic move #D-* Examples: #D- function IGCM_sys_Mv { IGCM_debug_PushStack "IGCM_sys_Mv" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mv :" $@ fi if [ $DRYRUN = 0 ]; then typeset status echo mv $@ > out_rsync 2>&1 \mv $@ >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Mv : error in mv." cat out_rsync IGCM_debug_Exit "IGCM_sys_Mv" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Mv" } #D-#================================================== #D-function IGCM_sys_Put_Dir #D-* Purpose: Copy a complete directory on $(ARCHIVE) #D-* Examples: #D- function IGCM_sys_Put_Dir { IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Dir :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -d ${1} ] ; then echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Dir" return fi typeset status # Only if we use rsync #IGCM_sys_TestDirArchive $( dirname $2 ) # #USUAL WAY rcp -r $1 gaya:$2 > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Put_Dir : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Dir" fi # due to rcommand latency sleep 10 else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Dir" } #D-#================================================== #D-function IGCM_sys_Get_Dir #D-* Purpose: Copy a complete directory from $(ARCHIVE) #D-* Examples: #D- function IGCM_sys_Get_Dir { IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get_Dir :" $@ fi if [ $DRYRUN = 0 ]; then # if [ ! -d ${1} ] ; then # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." # IGCM_debug_PopStack "IGCM_sys_Get_Dir" # return # fi typeset status #USUAL WAY rcp -rp gaya:$1 $2 > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get_Dir : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Get_Dir" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get_Dir" } #D-#================================================== #D-function IGCM_sys_Get_Master #D-* Purpose: Copy a complete directory from MASTER filesystem #D-* Examples: #D- function IGCM_sys_Get_Master { IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get_Master :" $@ fi if [ $DRYRUN = 0 ]; then TEST=$( IGCM_sys_RshMaster [ -d $1 ] || [ -f $1 ] && echo 1 || echo 0 ) if [ ${TEST} -ne 1 ] ; then echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ON ${MASTER}." IGCM_debug_PopStack "IGCM_sys_Get_Master" return fi typeset status #USUAL WAY rcp -r ${MASTER}:$1 $2 > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get_Master : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Get_Master" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get_Master" } #D-#================================================== #D-function IGCM_sys_Put_Out #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly #D-* Examples: #D- function IGCM_sys_Put_Out { IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Out :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -f ${1} ] ; then echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Out" return 1 fi typeset status # if [ X${JobType} = XRUN ] ; then if [ X${3} = X ] ; then IGCM_sys_Chmod 444 ${1} fi fi # # # USUAL WAY mfput $1 $2 > out_rsync 2>&1 status=$? # #RSYNC WITH NETWORK RSH CALL # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 # #RSYNC WITH NFS USE # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 # status=$? # IGCM_sys_Rsync_out $status # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( status=status+$? )) if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Put_Out : error." cat out_rsync IGCM_debug_Print 1 "mfput failed. Make a second try :" # mfput $1 $2 > out_rsync 2>&1 status=$? # if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Put_Out : error." IGCM_debug_Print 1 "mfput failed twice. You have a problem" cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Out" fi fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Out" return 0 } #D-#================================================== #D-function IGCM_sys_Get #D-* Purpose: Get a file from ${ARCHIVE} #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ function IGCM_sys_Get { IGCM_debug_PushStack "IGCM_sys_Get" $@ typeset DEST status dm_liste ifile target if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get :" $@ fi if [ $DRYRUN -le 2 ]; then if [ X${1} = X'/l' ] ; then # test if the first file is present in the old computation : eval set +A dm_liste \${${2}} else dm_liste=${1} fi eval DEST=\${${#}} # test if the (first) file is present in the old computation : IGCM_sys_TestFileArchive ${dm_liste[0]} status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." IGCM_debug_Exit "IGCM_sys_Get" #IGCM_debug_PopStack "IGCM_sys_Get" #return fi # SD : dm_liste is not suited for computing job # because we change filename during transfert # dm_liste is better suited for post-treatment # SD : dm_liste necessary only with RSYNC #dm_liste=" " #(( ifile=1 )) #while [ $ifile -lt $# ] ; do # dm_liste=$( eval echo ${dm_liste[*]} " "\${${ifile}} ) # (( ifile = ifile + 1 )) #done #DEST=$( eval echo \${${#}} ) #USUAL WAY mfget ${dm_liste[*]} ${DEST} > out_rsync 2>&1 # #RSYNC WITH NETWORK RSH CALL # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 # #RSYNC WITH NFS USE # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 # status=$? # IGCM_sys_Rsync_out $status # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( status=status+$? )) else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get" } #D-#================================================== #D-function IGCM_sys_Put_Dods #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. #D-* Examples: #D- function IGCM_sys_Put_Dods { IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Dods :" $@ fi if [ $DRYRUN = 0 ]; then # We take our time on that sleep 10 IGCM_sys_TestDirArchive ${R_SAVE}/${1} if [ $? != 0 ] ; then echo "WARNING : IGCM_sys_Put_Dods ${R_SAVE}/${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Dods" return fi typeset status # rsh gaya exec /bin/ksh < /dev/null 2>&1 /bin/chmod -R u+w ${R_SAVE}/${1} /usr/local/bin/dods_cp ${1} DODS/pub/${LOGIN}/${R_DODS} > /dev/null 2>&1 /bin/chmod -R +rX ${R_SAVE}/${1} /bin/chmod -R u+w ${R_SAVE}/${1} EOF status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Put_Dods : error." IGCM_debug_Exit "IGCM_sys_Put_Dods" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Dods" } ############################################################## A FINIR !! #D-#================================================== #D-function IGCM_sys_GetDate_FichWork #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK #D-* Examples: #D- function IGCM_sys_GetDate_FichWork { IGCM_debug_PushStack "IGCM_sys_FichWork" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetDate_FichWork :" $@ fi # donne la date filesys d'un fichier sur la machine work IGCM_debug_PopStack "IGCM_sys_FichWork" } #D-#================================================== #D-function IGCM_sys_GetDate_FichArchive #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE #D-* Examples: #D- function IGCM_sys_GetDate_FichArchive { IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetDate_FichArchive :" $@ fi IGCM_debug_PopStack "IGCM_sys_FichArchive" } ############################################################## # REBUILD OPERATOR function IGCM_sys_rebuild { IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_rebuild :" $@ fi /home/rech/psl/rpsl035/bin/rebuild -f -o $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_rebuild : erreur ${@}." IGCM_debug_Exit "rebuild" fi IGCM_debug_PopStack "IGCM_sys_rebuild" } function IGCM_sys_rebuild_station { IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ typeset i list_opt file_in file_out prefix_invert list_invert if ( $DEBUG_sys ) ; then echo "IGCM_sys_rebuild_station :" $@ fi list_opt=$@ # Invert Axis : t,x -> x,t # t,pres,x -> x,t,pres # So that we can concatenate along x i=0 for file_in in ${list_opt} ; do (( i = i + 1)) [ ${i} = 1 ] && file_out=${file_in} && continue prefix_invert=$( basename ${file_in} .nc ) IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc done # Concatenate IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc # Re-ivert file IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} # Station re-ordering is too expansive to be run within libICGM # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. # This re-ordering must be done "in memory" by the cmorization process # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) # BEGIN reordering # Only LMDZ text output contains the exact ordering of the station. # We isolate this in the code below: # 0 38 -157.5000000000000 70.98591549295774 # 0 54 27.49999999999999 67.18309859154928 # 0 56 -62.50000000000001 82.39436619718309 # 0 79 12.49999999999999 78.59154929577466 # 0 116 -165.0000000000000 76.05633802816901 # 0 117 130.0000000000000 70.98591549295774 # 0 118 110.0000000000000 87.46478873239437 # 1 40 4.999999999999995 51.97183098591550 # typeset iStation iProc list_opt file_in file_out prefix_invert # typeset -Z4 j4 # typeset -Z3 j3 # unset list_opt # set +A list_opt $@ # Filename after rebuild # file_out=${list_opt[0]} # Prefix of output files # prefix_invert=$( basename ${file_out} .nc ) # Number of procs # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) # iProc=0 # while [ ${iProc} -lt ${num_proc} ] ; do # Array containing Station as a number # unset proc_stn # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) # Number of stations produced by processor proc # stationLast=${#proc_stn[*]} # Proc number on 4 digits # j4=${iProc} # Init # iStation=0 # while [ ${iStation} -lt ${stationLast} ] ; do # Station number on 3 digits # j3=${proc_stn[${iStation}]} # Extract station # Invert Axis : t,x -> x,t # t,pres,x -> x,t,pres # So that we can concatenate along x # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc # (( iStation = iStation + 1 )) # done # (( iProc = iProc + 1 )) # done # Concatenate all station along x # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc # Re-invert file # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} # END reordering IGCM_debug_PopStack "IGCM_sys_rebuild_station" } ############################################################## # NCO OPERATOR function IGCM_sys_ncap2 { IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncap2 :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncap2 "$@" > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncap2 : ncap2 error" IGCM_debug_Exit "ncap2" fi IGCM_debug_PopStack "IGCM_sys_ncap2" } function IGCM_sys_ncatted { IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncatted :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncatted "$@" > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncatted : ncatted error" IGCM_debug_Exit "ncatted" fi IGCM_debug_PopStack "IGCM_sys_ncatted" } function IGCM_sys_ncbo { IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncbo :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncbo $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncbo : ncbo error" IGCM_debug_Exit "ncbo" fi IGCM_debug_PopStack "IGCM_sys_ncbo" } function IGCM_sys_ncdiff { IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncdiff :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncdiff $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncdiff : ncdiff error" IGCM_debug_Exit "ncdiff" fi IGCM_debug_PopStack "IGCM_sys_ncdiff" } function IGCM_sys_ncea { IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncea :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncea $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncea : ncea error" IGCM_debug_Exit "ncea" fi IGCM_debug_PopStack "IGCM_sys_ncea" } function IGCM_sys_ncecat { IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncecat :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncecat $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncecat : ncecat error" IGCM_debug_Exit "ncecat" fi IGCM_debug_PopStack "IGCM_sys_ncecat" } function IGCM_sys_ncflint { IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncflint :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncflint $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncflint : ncflint error" IGCM_debug_Exit "ncflint" fi IGCM_debug_PopStack "IGCM_sys_ncflint" } function IGCM_sys_ncks { IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncks :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncks $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncks : ncks error" IGCM_debug_Exit "ncks" fi IGCM_debug_PopStack "IGCM_sys_ncks" } function IGCM_sys_ncpdq { IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncpdq :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncpdq $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncpdq : ncpdq error" IGCM_debug_Exit "ncpdq" fi IGCM_debug_PopStack "IGCM_sys_ncpdq" } function IGCM_sys_ncra { IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncra :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncra $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncra : ncra error" IGCM_debug_Exit "ncra" fi IGCM_debug_PopStack "IGCM_sys_ncra" } function IGCM_sys_ncrcat { IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncrcat :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncrcat $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncrcat : ncrcat error" #IGCM_debug_Exit "ncrcat" fi IGCM_debug_PopStack "IGCM_sys_ncrcat" } function IGCM_sys_ncrename { IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncrename :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncrename $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncrename : ncrename error" IGCM_debug_Exit "ncrename" fi IGCM_debug_PopStack "IGCM_sys_ncrename" } function IGCM_sys_ncwa { IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncwa :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do ncwa $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_ncwa : ncwa error" IGCM_debug_Exit "ncwa" fi IGCM_debug_PopStack "IGCM_sys_ncwa" } ############################################################## # CDO OPERATOR function IGCM_sys_cdo { IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_cdo :" $@ fi typeset status \cdo $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_cdo : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_PopStack "IGCM_sys_cdo" return 1 else IGCM_debug_PopStack "IGCM_sys_cdo" return 0 fi IGCM_debug_PopStack "IGCM_sys_cdo" } ############################################################ # Activate Running Environnment Variables function IGCM_sys_activ_variables { IGCM_debug_PushStack "IGCM_sys_activ_variables" if ( $DEBUG_sys ) ; then echo "IGCM_sys_activ_variables" fi IGCM_debug_PopStack "IGCM_sys_activ_variables" } ############################################################ # Desactivate Running Environnment Variables function IGCM_sys_desactiv_variables { IGCM_debug_PushStack "IGCM_sys_desactiv_variables" if ( $DEBUG_sys ) ; then echo "IGCM_sys_desactiv_variables" fi IGCM_debug_PopStack "IGCM_sys_desactiv_variables" } ############################################################ # Build run file function IGCM_sys_build_run_file { IGCM_debug_PushStack "IGCM_sys_build_run_file" if ( $DEBUG_sys ) ; then echo "IGCM_sys_build_run_file" fi IGCM_debug_PopStack "IGCM_sys_build_run_file" } ############################################################ # Check of space available on temporary filesytems function IGCM_sys_check_quota { IGCM_debug_PushStack "IGCM_sys_check_quota" if ( $DEBUG_sys ) ; then echo "IGCM_sys_check_quota" fi IGCM_debug_PopStack "IGCM_sys_check_quota" }