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source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_titane.ksh @ 727

Last change on this file since 727 was 725, checked in by sdipsl, 12 years ago
prepare sys lib to be able to run/store on scratchdir when running TEST simulation bugfix : rebuild can't overwrite existing files neither write things in a tmp file before moving it to a final file. So we need to clean things up for him cosmetics
Property svn:keywords set to `Revision Author Date`
File size: 83.5 KB

Line
1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5	# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#=========================================================
15	# The documentation of this file can be automatically generated
16	# if you use the prefix #D- for comments to be extracted.
17	# Extract with command: cat lib* \| grep "^#D-" \| cut -c "4-"
18	#=========================================================
19
20	#D-#==================================================
21	#D-LibIGCM_sys for Titane
22	#D-#==================================================
23	#D-
24	#D- This ksh library if a layer under some usefull
25	#D-environment variables and shell commands.
26	#D-All those definitions depend on host particularities.
27	#D-It manages a stack mechanism and test validity of operations.
28	#D-All function described bellow must be prefixed by IGCM_sys.
29
30	#====================================================
31	# libIGCM_sys PARAMETERS
32	#====================================================
33
34	#====================================================
35	# set DEBUG_sys to true to output calls of function
36	typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38	#====================================================
39	# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40	typeset -r DRYRUN=${DRYRUN:=0}
41
42	# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43	# -------------------------------------------------------------------------------------
44	# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
45	# \| \| Cp/Exe param files \| \| Chmod \| \|
46	# \| \| Qsub \| \| \| \|
47	# -------------------------------------------------------------------------------------
48	# \| 0 \| yes \| yes \| yes \| yes \|
49	# -------------------------------------------------------------------------------------
50	# \| 1 \| yes \| yes \| yes \| no \|
51	# -------------------------------------------------------------------------------------
52	# \| 2 \| yes \| yes \| no \| no \|
53	# -------------------------------------------------------------------------------------
54	# \| 3 \| yes \| no \| no \| no \|
55	# -------------------------------------------------------------------------------------
56
57	#=====================================================
58	# Global Variables :
59	#=====================================================
60	# Language : "fr" or "en"
61	typeset -r MYLANG="fr"
62
63	#=====================================================
64	# Host and user names
65	# $hostname ou hostname
66	typeset HOST=${HOST:=$( hostname )}
67	# $username ou whoami
68	typeset LOGIN=${LOGIN:=$( whoami )}
69	# $hostname of the MASTER job
70	typeset MASTER=titane
71
72	#D-
73	#D-#==================================================
74	#D-Program used in libIGCM
75	#D-#==================================================
76
77	# rsync with path
78	typeset -r RSYNC=/usr/bin/rsync
79	# RSYNC_opt args to rsync
80	typeset -r RSYNC_opt="-va"
81	# ie storage filesystem
82	typeset -r STOREHOST=${MASTER}
83
84	#====================================================
85	# Source default environment
86	#====================================================
87	. /etc/profile
88
89	#====================================================
90	# Set environment tools (ferret, nco, cdo)
91	#====================================================
92	. /home/cont003/p86ipsl/.atlas_env_titane_ksh
93	if ( [ X${LSB_QUEUE} = Xmono ] \|\| [ X${LSB_QUEUE} = Xmonoext ] ) ; then
94	module switch nco/3.9.4 nco/3.9.4_netcdf4
95	fi
96
97	#====================================================
98	# Specific for ocean additionnal diagnostic
99	export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
100	export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
101
102	#====================================================
103	# Host specific DIRECTORIES
104	#====================================================
105
106	# ============ CESIUM START ============ #
107
108	#====================================================
109	#- Mirror libIGCM from titane to cesium if needed
110	#ROOTSYS=$( echo ${libIGCM} \| gawk -F"/" '{print $3}' )
111	#if [ ! ${ROOTSYS} = "home" ] ; then
112	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
113	#else
114	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
115	#fi
116
117	#====================================================
118	#- libIGCM_POST
119	#if ( ${MirrorlibIGCM} ) ; then
120	# PATHlibIGCM=$( echo ${libIGCM} \| gawk -F"${LOGIN}/" '{print $2}' \| sed -e "s&/libIGCM&&" )
121	# typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
122	#else
123	# typeset -r libIGCM_POST=${libIGCM}
124	#fi
125
126	# ============ CESIUM END ============ #
127
128	#====================================================
129	#- MirrorlibIGCM for frontend
130	typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
131
132	#====================================================
133	#- libIGCM_POST for frontend
134	typeset -r libIGCM_POST=${libIGCM}
135
136	#====================================================
137	#- R_EXE (==> BIN_DIR = ${MODIPSL}/bin )
138	typeset -r R_EXE="${MODIPSL}/bin"
139
140	#====================================================
141	#- SUBMIT_DIR : submission dir
142	typeset SUBMIT_DIR=${SUBMIT_DIR:=${LS_SUBCWD}}
143
144	#====================================================
145	#- IN
146	typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
147	typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data}
148
149	#====================================================
150	#- ARCHIVE (dedicated to large files)
151	typeset ARCHIVE=${CCCSTOREDIR}
152
153	#====================================================
154	#- STORAGE (dedicated to small/medium files)
155	typeset STORAGE=${CCCWORKDIR}
156
157	#====================================================
158	#- R_OUT
159	typeset R_OUT=${ARCHIVE}/IGCM_OUT
160
161	#====================================================
162	#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
163	typeset R_FIG=${STORAGE}/IGCM_OUT
164
165	#====================================================
166	#- R_BUF (ONLY FOR double copy an scratch)
167	typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
168
169	#====================================================
170	#- BIG_DIR : BIG_DIR to store files waiting for rebuild
171	typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD}
172
173	#====================================================
174	#- OUT_POST
175	typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT
176
177	#====================================================
178	#- RUN_DIR_PATH : Temporary working directory (=> TMP)
179	if ( [ ! X${LSB_QUEUE} = Xmono ] && [ ! X${LSB_QUEUE} = Xmonoext ] ) ; then
180	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${LSB_JOBID}}
181	else
182	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${LSB_JOBID}}
183	fi
184
185	#====================================================
186	#- HOST_MPIRUN_COMMAND
187	typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"}
188
189	#====================================================
190	#- Max number of arguments passed to nco operator or demigration command
191	UNIX_MAX_LIMIT=360
192
193	#====================================================
194	#- set PackDefault true on titane
195	PackDefault=true
196
197	#====================================================
198	#- Number of core per node (max number of OpenMP task)
199	NUM_COREPERNODE=8
200
201	#====================================================
202	#- Default number of MPI task for IPSL coupled model
203	#- required for backward compatibility
204	#-
205	DEFAULT_NUM_PROC_OCE=5
206	DEFAULT_NUM_PROC_CPL=1
207	(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
208	DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
209
210	#D-#==================================================
211	#D-function IGCM_sys_ChangeArchive
212	#D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR
213	#D-* Examples:
214	#D-
215	function IGCM_sys_ChangeArchive {
216	IGCM_debug_PushStack "IGCM_sys_ChangeArchive"
217
218	ARCHIVE=${SCRATCHDIR}
219	STORAGE=${SCRATCHDIR}
220	R_OUT=${ARCHIVE}/IGCM_OUT
221	R_FIG=${STORAGE}/IGCM_OUT
222
223	IGCM_debug_Print 1 "ARCHIVE has been redefined = ${ARCHIVE}"
224	IGCM_debug_Print 1 "STORAGE has been redefined = ${STORAGE}"
225	IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}"
226	IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}"
227
228	IGCM_debug_PopStack "IGCM_sys_ChangeArchive"
229	}
230
231	#D-#==================================================
232	#D-function IGCM_sys_RshMaster
233	#D-* Purpose: Connection to frontend machine.
234	#D-* Examples:
235	#D-
236	function IGCM_sys_RshMaster {
237	IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
238	/bin/ksh <<-EOF
239	export libIGCM=${libIGCM}
240	export DEBUG_debug=${DEBUG_debug}
241	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
242	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
243	${@}
244	EOF
245	if [ $? -gt 0 ] ; then
246	echo "IGCM_sys_RshMaster : erreur."
247	IGCM_debug_Exit "IGCM_sys_RshMaster"
248	fi
249	IGCM_debug_PopStack "IGCM_sys_RshMaster"
250	}
251
252	#D-#==================================================
253	#D-function IGCM_sys_RshArchive
254	#D-* Purpose: Archive rsh command
255	#D-* Examples:
256	#D-
257	function IGCM_sys_RshArchive {
258	IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
259	/bin/ksh <<-EOF
260	${@}
261	EOF
262	if [ $? -gt 0 ] ; then
263	echo "IGCM_sys_RshArchive : erreur."
264	IGCM_debug_Exit "IGCM_sys_RshArchive"
265	fi
266	IGCM_debug_PopStack "IGCM_sys_RshArchive"
267	}
268
269	#D-#==================================================
270	#D-function IGCM_sys_RshPost
271	#D-* Purpose: Post-process rsh command
272	#D-* Examples:
273	#D-
274	function IGCM_sys_RshPost {
275	IGCM_debug_PushStack "IGCM_sys_RshPost" $@
276	if ( $DEBUG_sys ) ; then
277	echo "IGCM_sys_RshPost :" $@
278	fi
279
280	#echo cat tmp_IGCM_sys_RshPost_$$ INITIAL
281	#cat tmp_IGCM_sys_RshPost_$$
282	# keep standard input (stdin) for the loop onto temporary file
283	cat >tmp_IGCM_sys_RshPost_$$
284
285	# ============ FRONTEND START ============ #
286
287	/bin/ksh <tmp_IGCM_sys_RshPost_$$
288	if [ $? -gt 0 ] ; then
289	echo "IGCM_sys_RshPost : erreur."
290	IGCM_debug_Exit "IGCM_sys_RshPost"
291	fi
292	# delete temporary file
293	\rm tmp_IGCM_sys_RshPost_$$
294
295	# ============ FRONTEND END ============ #
296
297	# ============ CESIUM START ============ #
298	# typeset NB_ESSAI DELAI status i
299	# if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
300	# #little hack so that rebuild submission is done on titane not an cesium
301	#
302	# libIGCM_POST_sed=$( echo $libIGCM_POST \| sed 's/\//\\\//g' )
303	# POST_DIR_sed=$( echo ${POST_DIR} \| sed 's/\//\\\//g' )
304	# sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
305	# sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
306	# sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
307	# sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
308	# \mv tmp.txt tmp_IGCM_sys_RshPost_$$
309	#
310	# echo cat tmp_IGCM_sys_RshPost_$$ AFTER
311	# cat tmp_IGCM_sys_RshPost_$$
312	#
313	# /bin/ksh <tmp_IGCM_sys_RshPost_$$
314	# if [ $? -gt 0 ] ; then
315	# echo "IGCM_sys_RshPost : erreur."
316	# IGCM_debug_Exit "IGCM_sys_RshPost"
317	# fi
318	# # delete temporary file
319	# \rm tmp_IGCM_sys_RshPost_$$
320	#
321	# else
322	# # number of tentative
323	# NB_ESSAI=10
324	# # time delay between tentative
325	# DELAI=10
326	# i=0
327	# while [ $i -ne $NB_ESSAI ] ; do
328	# ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
329	# status=$?
330	# if [ ${status} -ne 0 ];
331	# then
332	# sleep $DELAI
333	# else
334	# break
335	# fi
336	# let i=$i+1
337	# done
338	# # delete temporary file
339	# \rm tmp_IGCM_sys_RshPost_$$
340	#
341	# if [ ${status} -gt 0 ] ; then
342	# echo "IGCM_sys_RshPost : erreur."
343	# IGCM_debug_Exit "IGCM_sys_RshPost"
344	# fi
345	# fi
346
347	# ============ CESIUM END ============ #
348
349	IGCM_debug_PopStack "IGCM_sys_RshPost"
350	}
351
352	#D-#==================================================
353	#D-function IGCM_sys_SendMail
354	#D-* Purpose: Send mail when simulation is over
355	#D-* Examples:
356	#D-
357	function IGCM_sys_SendMail {
358	IGCM_debug_PushStack "IGCM_sys_SendMail" $@
359	if ( $DEBUG_sys ) ; then
360	echo "IGCM_sys_SendMail :" $@
361	fi
362
363	if ( ${ExitFlag} ) ; then
364	status=failed
365	else
366	status=completed
367	fi
368
369	cat << END_MAIL > job_end.mail
370	Dear ${LOGIN},
371
372	Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
373	Job started : ${DateBegin}
374	Job ended : ${DateEnd}
375	Output files are available in ${R_SAVE}
376	Files to be rebuild are temporarily available in ${REBUILD_DIR}
377	Pre-packed files are temporarily available in ${R_BUFR}
378	Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
379	END_MAIL
380
381	if [ ! -z ${config_UserChoices_MailName} ] ; then
382	mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
383	elif [ -f ~/.forward ] ; then
384	mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
385	fi
386	sleep 10
387	rm -f job_end.mail
388
389	if [ $? -gt 0 ] ; then
390	echo "IGCM_sys_SendMail : erreur."
391	IGCM_debug_Exit "IGCM_sys_SendMail"
392	fi
393	IGCM_debug_PopStack "IGCM_sys_SendMail"
394	}
395
396	#D-#==================================================
397	#D-function IGCM_sys_Mkdir
398	#D-* Purpose: Master locale mkdir command
399	#D-* Examples:
400	#D-
401	function IGCM_sys_Mkdir {
402	IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
403	if ( $DEBUG_sys ) ; then
404	echo "IGCM_sys_Mkdir :" $@
405	fi
406	if [ ! -d ${1} ]; then
407	\mkdir -p $1
408	if [ $? -gt 0 ] ; then
409	echo "IGCM_sys_Mkdir : erreur."
410	IGCM_debug_Exit "IGCM_sys_Mkdir"
411	fi
412	fi
413	# vérification :
414	if [ ! -d ${1} ] ; then
415	echo "IGCM_sys_Mkdir : erreur."
416	IGCM_debug_Exit "IGCM_sys_Mkdir"
417	fi
418	IGCM_debug_PopStack "IGCM_sys_Mkdir"
419	}
420
421	#D-#==================================================
422	#D-function IGCM_sys_MkdirArchive
423	#D-* Purpose: Mkdir on Archive
424	#D-* Examples:
425	#D-
426	function IGCM_sys_MkdirArchive {
427	IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
428	if ( $DEBUG_sys ) ; then
429	echo "IGCM_sys_MkdirArchive :" $@
430	fi
431	#- creation de repertoire sur le serveur fichier
432	if [ ! -d ${1} ]; then
433	\mkdir -p $1
434	if [ $? -gt 0 ] ; then
435	echo "IGCM_sys_MkdirArchive : erreur."
436	IGCM_debug_Exit "IGCM_sys_MkdirArchive"
437	fi
438	fi
439	IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
440	}
441
442	#D-#==================================================
443	#D-function IGCM_sys_MkdirWork
444	#D-* Purpose: Mkdir on Work
445	#D-* Examples:
446	#D-
447	function IGCM_sys_MkdirWork {
448	IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
449	if ( $DEBUG_sys ) ; then
450	echo "IGCM_sys_MkdirWork :" $@
451	fi
452	#- creation de repertoire sur le serveur fichier
453	if [ ! -d ${1} ]; then
454	\mkdir -p $1
455	if [ $? -gt 0 ] ; then
456	echo "IGCM_sys_MkdirWork : erreur."
457	IGCM_debug_Exit "IGCM_sys_MkdirWork"
458	fi
459	fi
460	IGCM_debug_PopStack "IGCM_sys_MkdirWork"
461	}
462
463	#D-#==================================================
464	#D-function IGCM_sys_Cd
465	#D-* Purpose: master cd command
466	#D-* Examples:
467	#D-
468	function IGCM_sys_Cd {
469	IGCM_debug_PushStack "IGCM_sys_Cd" $@
470	if ( $DEBUG_sys ) ; then
471	echo "IGCM_sys_Cd :" $@
472	fi
473	\cd $1
474	if [ $? -gt 0 ] ; then
475	echo "IGCM_sys_Cd : erreur."
476	IGCM_debug_Exit "IGCM_sys_Cd"
477	fi
478	IGCM_debug_PopStack "IGCM_sys_Cd"
479	}
480
481	#D-#==================================================
482	#D-function IGCM_sys_Chmod
483	#D-* Purpose: Chmod
484	#D-* Examples:
485	#D-
486	function IGCM_sys_Chmod {
487	IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
488	if ( $DEBUG_sys ) ; then
489	echo "IGCM_sys_Chmod :" $@
490	fi
491	if [ $DRYRUN -le 1 ]; then
492	\chmod $@
493	if [ $? -gt 0 ] ; then
494	echo "IGCM_sys_Chmod : erreur."
495	IGCM_debug_Exit "IGCM_sys_Chmod"
496	fi
497	else
498	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
499	fi
500	IGCM_debug_PopStack "IGCM_sys_Chmod"
501	}
502
503	#D-#==================================================
504	#D-function IGCM_sys_FileSize
505	#D-* Purpose: Filesize
506	#D-* Examples:
507	#D-
508	function IGCM_sys_FileSize {
509	IGCM_debug_PushStack "IGCM_sys_FileSize" $@
510
511	typeset sizeF
512	set +A sizeF -- $( ls -la ${1} )
513	if [ $? -gt 0 ] ; then
514	IGCM_debug_Exit "IGCM_sys_FileSize"
515	fi
516	eval ${2}=${sizeF[4]}
517
518	IGCM_debug_PopStack "IGCM_sys_FileSize"
519	}
520
521	#D-#==================================================
522	#D-function IGCM_sys_TestDir
523	#D-* Purpose: Test Directory that must exists
524	#D-* Examples:
525	#D-
526	function IGCM_sys_TestDir {
527	IGCM_debug_PushStack "IGCM_sys_TestDir" $@
528	if ( $DEBUG_sys ) ; then
529	echo "IGCM_sys_TestDir :" $@
530	fi
531	typeset ExistFlag
532	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
533	IGCM_debug_PopStack "IGCM_sys_TestDir"
534
535	return ${ExistFlag}
536	}
537
538	#D-#==================================================
539	#D-function IGCM_sys_TestDirArchive
540	#D-* Purpose: Test Directory that must exists on Archive
541	#D-* Examples:
542	#D-
543	function IGCM_sys_TestDirArchive {
544	IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
545	if ( $DEBUG_sys ) ; then
546	echo "IGCM_sys_TestDirArchive :" $@
547	fi
548	typeset ExistFlag
549	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
550	IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
551
552	return ${ExistFlag}
553	}
554
555	#D-#==================================================
556	#D-function IGCM_sys_IsFileArchived
557	#D-* Purpose: Test file that must NOT EXISTS on Archive
558	#D-* Examples:
559	#D-
560	function IGCM_sys_IsFileArchived {
561	IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
562	if ( $DEBUG_sys ) ; then
563	echo "IGCM_sys_IsFileArchived :" $@
564	fi
565	typeset IsArchivedFlag
566	IsArchivedFlag=$( [ X$( echo $1 \| grep ^\/ccc\/store ) != X ] && echo 0 \|\| echo 1 )
567	IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
568
569	return ${IsArchivedFlag}
570	}
571
572	#D-#==================================================
573	#D-function IGCM_sys_TestFileArchive
574	#D-* Purpose: Test file that must NOT EXISTS on Archive
575	#D-* Examples:
576	#D-
577	function IGCM_sys_TestFileArchive {
578	IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
579	typeset ExistFlag
580	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
581	IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
582
583	return ${ExistFlag}
584	}
585
586	#D-#==================================================
587	#D-function IGCM_sys_TestFileBuffer
588	#D-* Purpose: Test file that must NOT EXISTS on Buffer
589	#D-* Examples:
590	#D-
591	function IGCM_sys_TestFileBuffer {
592	IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
593	typeset ExistFlag
594	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
595	IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
596
597	return ${ExistFlag}
598	}
599
600	#D-#==================================================
601	#D-function IGCM_sys_CountFileArchive
602	#D-* Purpose: Count files on Archive filesystem
603	#D-* Examples:
604	#D-
605	function IGCM_sys_CountFileArchive {
606	IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
607	ls ${@} 2>/dev/null \| wc -l
608	if [ $? -gt 0 ] ; then
609	echo "IGCM_sys_CountFileArchive : erreur."
610	fi
611	IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
612	}
613
614	#D-#==================================================
615	#D-function IGCM_sys_CountFileBuffer
616	#D-* Purpose: Count files on Scratch filesystem
617	#D-* Examples:
618	#D-
619	function IGCM_sys_CountFileBuffer {
620	IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
621	ls ${@} 2>/dev/null \| wc -l
622	if [ $? -gt 0 ] ; then
623	echo "IGCM_sys_CountFileBuffer : erreur."
624	fi
625	IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
626	}
627
628	#D-#==================================================
629	#D-function IGCM_sys_Tree
630	#D-* Purpose: Tree directories with files on ${ARCHIVE}
631	#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
632	#D-
633	function IGCM_sys_Tree {
634	IGCM_debug_PushStack "IGCM_sys_Tree" $@
635	if ( $DEBUG_sys ) ; then
636	echo "IGCM_sys_Tree :" $@
637	fi
638
639	\ls -lR ${@}
640
641	IGCM_debug_PopStack "IGCM_sys_Tree"
642	}
643
644	#D-#==================================================
645	#D-function IGCM_sys_Tar
646	#D-* Purpose: master tar command
647	#D-* Examples:
648	#D-
649	function IGCM_sys_Tar {
650	IGCM_debug_PushStack "IGCM_sys_Tar" $@
651	if ( $DEBUG_sys ) ; then
652	echo "IGCM_sys_Tar :" $@
653	fi
654	\tar cf $@
655	if [ $? -gt 0 ] ; then
656	echo "IGCM_sys_Tar : erreur."
657	IGCM_debug_Exit "IGCM_sys_Tar"
658	fi
659	IGCM_debug_PopStack "IGCM_sys_Tar"
660	}
661
662	#D-#==================================================
663	#D-function IGCM_sys_UnTar
664	#D-* Purpose: master un-tar command
665	#D-* Examples:
666	#D-
667	function IGCM_sys_UnTar {
668	IGCM_debug_PushStack "IGCM_sys_UnTar" $@
669	if ( $DEBUG_sys ) ; then
670	echo "IGCM_sys_UnTar :" $@
671	fi
672	\tar xvf $1
673	if [ $? -gt 0 ] ; then
674	echo "IGCM_sys_UnTar : erreur."
675	IGCM_debug_Exit "IGCM_sys_UnTar"
676	fi
677	IGCM_debug_PopStack "IGCM_sys_UnTar"
678	}
679
680	#D-#==================================================
681	#D-function IGCM_sys_Qsub
682	#D-* Purpose: Qsub new job
683	#D-* Examples:
684	#D-
685	function IGCM_sys_Qsub {
686	IGCM_debug_PushStack "IGCM_sys_Qsub" $@
687	if ( $DEBUG_sys ) ; then
688	echo "IGCM_sys_Qsub :" $@
689	fi
690	typeset options
691	if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then
692	options=" -o ${Script_Output} -e ${Script_Output}"
693	else
694	options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}"
695	fi
696
697	/usr/local/bin/ccc_msub ${options} < $1
698	if [ $? -gt 0 ] ; then
699	echo "IGCM_sys_Qsub : erreur ${options} $1"
700	IGCM_debug_Exit "IGCM_sys_Qsub"
701	fi
702	IGCM_debug_PopStack "IGCM_sys_Qsub"
703	}
704
705	#D-#==================================================
706	#D-function IGCM_sys_QsubPost
707	#D-* Purpose: Qsub new job on scalaire
708	#D-* Examples:
709	#D-
710	function IGCM_sys_QsubPost {
711	IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
712	if ( $DEBUG_sys ) ; then
713	echo "IGCM_sys_QsubPost :" $@
714	fi
715
716	# Need to export listVarEnv for cesium
717	# NO Need to export listVarEnv for titane
718	# ============ FRONTEND START ============ #
719
720	/usr/local/bin/ccc_msub -p ${BRIDGE_MSUB_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job
721
722	# ============ FRONTEND END ============ #
723
724	# ============ CESIUM START ============ #
725	# typeset NB_ESSAI DELAI status i
726	# # number of tentative
727	# NB_ESSAI=10
728	# # time delay between tentative
729	# DELAI=10
730	# (( i = 0 ))
731	# while [ $i -lt $NB_ESSAI ] ; do
732	# /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job
733	# status=$?
734	# if [ ${status} -gt 0 ]; then
735	# sleep $DELAI
736	# else
737	# break
738	# fi
739	# (( i = i + 1 ))
740	# done
741	# ============ CESIUM END ============ #
742
743	if [ $? -gt 0 ] ; then
744	echo "IGCM_sys_QsubPost : erreur " $@
745	IGCM_debug_Exit "IGCM_sys_QsubPost"
746	fi
747	IGCM_debug_PopStack "IGCM_sys_QsubPost"
748	}
749
750	#D-*************************
751	#D- File transfer functions
752	#D-*************************
753	#D-
754
755	#D-#==================================================
756	#D-function IGCM_sys_Rsync_out
757	#D-* Purpose: treat return val of rsync
758	#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
759	#D- Error values and explanations can depend on your system version.
760	function IGCM_sys_Rsync_out {
761	status=$1
762	if [ ! $status ] ; then
763	echo "rsync error !"
764	fi
765
766	if [ $MYLANG = "fr" ]; then
767	case $status in
768	0) return ;;
769	1) echo "Erreur de rsync ; RERR_SYNTAX : "
770	echo "Erreur de syntaxe ou d'utilisation."
771	return;;
772	2) echo "Erreur de rsync ; RERR_PROTOCOL : "
773	echo "Incompatibilité de protocole."
774	return;;
775	3) echo "Erreur de rsync ; RERR_FILESELECT 3"
776	echo "Erreurs lors de la sélection des fichiers d'entrée sortie et"
777	echo "répertoires"
778	return;;
779	4) echo "Erreur de rsync ; RERR_UNSUPPORTED"
780	echo "Action demandée non supportée : une tentative de manipulation de"
781	echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a"
782	echo "été faite ; ou une option qui est supportée par le client mais"
783	echo "pas par le serveur a été spécifiée."
784	return;;
785	10) echo "Erreur de rsync ; RERR_SOCKETIO"
786	echo "Erreur dans le socket d'entrée sortie"
787	return;;
788	11) echo "Erreur de rsync ; RERR_FILEIO"
789	echo "Erreur d'entrée sortie fichier"
790	return;;
791	12) echo "Erreur de rsync ; RERR_STREAMIO"
792	echo "Erreur dans flux de donnée du protocole rsync"
793	return;;
794	13) echo "Erreur de rsync ; RERR_MESSAGEIO"
795	echo "Erreur avec les diagnostics du programme"
796	return;;
797	14) echo "Erreur de rsync ; RERR_IPC"
798	echo "Erreur dans le code IPC"
799	return;;
800	20) echo "Erreur de rsync ; RERR_SIGNAL"
801	echo "SIGUSR1 ou SIGINT reçu"
802	return;;
803	21) echo "Erreur de rsync ; RERR_WAITCHILD"
804	echo "Une erreur retournée par waitpid()"
805	return;;
806	22) echo "Erreur de rsync ; RERR_MALLOC"
807	echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
808	return;;
809	23) echo ""
810	echo "Erreur fichier inexistant"
811	return;;
812	30) echo "Erreur de rsync ; RERR_TIMEOUT"
813	echo "Temps d'attente écoulé dans l'envoi/réception de données"
814	return;;
815	*) echo "Erreur de rsync : code de retour de rsync inconnu :" $status
816	return;;
817	esac
818	elif [ $MYLANG = "en" ] ; then
819	case $status in
820	0) return;;
821	1) echo "rsync error : Syntax or usage error "
822	return;;
823	2) echo "rsync error : Protocol incompatibility "
824	return;;
825	3) echo "rsync error : Errors selecting input/output files, dirs"
826	return;;
827	4) echo "rsync error : Requested action not supported: an attempt"
828	echo "was made to manipulate 64-bit files on a platform that cannot support"
829	echo "them; or an option was specified that is supported by the client and"
830	echo "not by the server."
831	return;;
832	5) echo "rsync error : Error starting client-server protocol"
833	return;;
834	10) echo "rsync error : Error in socket I/O "
835	return;;
836	11) echo "rsync error : Error in file I/O "
837	return;;
838	12) echo "rsync error : Error in rsync protocol data stream "
839	return;;
840	13) echo "rsync error : Errors with program diagnostics "
841	return;;
842	14) echo "rsync error : Error in IPC code "
843	return;;
844	20) echo "rsync error : Received SIGUSR1 or SIGINT "
845	return;;
846	21) echo "rsync error : Some error returned by waitpid() "
847	return;;
848	22) echo "rsync error : Error allocating core memory buffers "
849	return;;
850	23) echo "rsync error : Partial transfer due to error"
851	return;;
852	24) echo "rsync error : Partial transfer due to vanished source files"
853	return;;
854	30) echo "rsync error : Timeout in data send/receive "
855	return;;
856	*) echo "rsync error : return code of rsync unknown :" $status
857	return;;
858	esac
859	else
860	echo "unknown language $MYLANG."
861	return
862	fi
863	}
864
865	#D-#==================================================
866	#D-function IGCM_sys_Miror_libIGCM
867	#D-* Purpose: Mirror libIGCM PATH and lib to cesium
868	#D-* Examples:
869	#D-
870	function IGCM_sys_Mirror_libIGCM {
871	IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
872	if ( $DEBUG_sys ) ; then
873	echo "IGCM_sys_Mirror_libIGCM"
874	fi
875
876	typeset status DEST
877
878	mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
879
880	echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
881	${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
882	status=$?
883
884	if [ ${status} -gt 0 ] ; then
885	echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium."
886	cat out_rsync
887	fi
888	IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
889	}
890
891	#D-#==================================================
892	#D-function IGCM_sys_Cp
893	#D-* Purpose: generic cp
894	#D-* Examples:
895	#D-
896	function IGCM_sys_Cp {
897	IGCM_debug_PushStack "IGCM_sys_Cp" $@
898	if ( $DEBUG_sys ) ; then
899	echo "IGCM_sys_Cp :" $@
900	fi
901
902	typeset status
903
904	echo cp $@ > out_rsync 2>&1
905	\cp $@ >> out_rsync 2>&1
906	status=$?
907
908	if [ ${status} -gt 0 ] ; then
909	echo "IGCM_sys_Cp : error code ${status}"
910	cat out_rsync
911	IGCM_debug_Exit "IGCM_sys_Cp"
912	else
913	\rm out_rsync
914	fi
915	IGCM_debug_PopStack "IGCM_sys_Cp"
916	}
917
918	#D-#==================================================
919	#D-function IGCM_sys_Rm
920	#D-* Purpose: generic rm
921	#D-* Examples:
922	#D-
923	function IGCM_sys_Rm {
924	IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
925	if ( $DEBUG_sys ) ; then
926	echo "IGCM_sys_Rm :" $@
927	fi
928
929	typeset status
930
931	echo rm $@ > out_rsync 2>&1
932	\rm $@ >> out_rsync 2>&1
933	status=$?
934
935	if [ ${status} -gt 0 ] ; then
936	echo "IGCM_sys_Rm : error code ${status}"
937	cat out_rsync
938	IGCM_debug_Exit "IGCM_sys_Rm"
939	else
940	\rm out_rsync
941	fi
942	IGCM_debug_PopStack "IGCM_sys_Rm"
943	}
944
945	#D-#==================================================
946	#D-function IGCM_sys_RmRunDir
947	#D-* Purpose: rm tmpdir (dummy function most of the time batch
948	#D- scheduler will do the job)
949	#D-* Examples:
950	#D-
951	function IGCM_sys_RmRunDir {
952	IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
953	if ( $DEBUG_sys ) ; then
954	echo "IGCM_sys_RmRunDir :" $@
955	fi
956
957	typeset status
958
959	echo rm $@ > out_rsync 2>&1
960	\rm $@ >> out_rsync 2>&1
961	status=$?
962
963	if [ ${status} -gt 0 ] ; then
964	echo "IGCM_sys_RmRunDir : error code ${status}"
965	cat out_rsync
966	IGCM_debug_Exit "IGCM_sys_RmRunDir"
967	else
968	\rm out_rsync
969	fi
970	IGCM_debug_PopStack "IGCM_sys_RmRunDir"
971	}
972
973	#D-#==================================================
974	#D-function IGCM_sys_Mv
975	#D-* Purpose: generic move
976	#D-* Examples:
977	#D-
978	function IGCM_sys_Mv {
979	IGCM_debug_PushStack "IGCM_sys_Mv" $@
980	if ( $DEBUG_sys ) ; then
981	echo "IGCM_sys_Mv :" $@
982	fi
983
984	if [ $DRYRUN = 0 ]; then
985
986	typeset status
987
988	echo mv $@ > out_rsync 2>&1
989	\mv $@ >> out_rsync 2>&1
990	status=$?
991
992	if [ ${status} -gt 0 ] ; then
993	echo "IGCM_sys_Mv : error code ${status}"
994	cat out_rsync
995	IGCM_debug_Exit "IGCM_sys_Mv"
996	else
997	\rm out_rsync
998	fi
999	else
1000	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1001	fi
1002
1003	IGCM_debug_PopStack "IGCM_sys_Mv"
1004	}
1005
1006	#D-#==================================================
1007	#D-function IGCM_sys_Put_Dir
1008	#D-* Purpose: Copy a complete directory on $(ARCHIVE)
1009	#D-* Examples:
1010	#D-
1011	function IGCM_sys_Put_Dir {
1012	IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
1013	if ( $DEBUG_sys ) ; then
1014	echo "IGCM_sys_Put_Dir :" $@
1015	fi
1016	if [ $DRYRUN = 0 ]; then
1017	if [ ! -d ${1} ] ; then
1018	echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
1019	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
1020	return
1021	fi
1022
1023	typeset status
1024
1025	# Only if we use rsync
1026	#IGCM_sys_TestDirArchive $( dirname $2 )
1027	#
1028	#USUAL WAY
1029	\cp -r $1 $2 > out_rsync 2>&1
1030	status=$?
1031
1032	if [ ${status} -gt 0 ] ; then
1033	echo "IGCM_sys_Put_Dir : error code ${status}"
1034	cat out_rsync
1035	IGCM_debug_Exit "IGCM_sys_Put_Dir"
1036	else
1037	\rm out_rsync
1038	fi
1039	else
1040	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1041	fi
1042	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
1043	}
1044
1045	#D-#==================================================
1046	#D-function IGCM_sys_Get_Dir
1047	#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1048	#D-* Examples:
1049	#D-
1050	function IGCM_sys_Get_Dir {
1051	IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1052	if ( $DEBUG_sys ) ; then
1053	echo "IGCM_sys_Get_Dir :" $@
1054	fi
1055	if [ $DRYRUN = 0 ]; then
1056	# if [ ! -d ${1} ] ; then
1057	# echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1058	# IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1059	# return
1060	# fi
1061
1062	typeset NB_ESSAI DELAI status i
1063	# number of tentative
1064	NB_ESSAI=3
1065	# time delay between tentative
1066	DELAI=2
1067
1068	# Only if we use rsync
1069	#IGCM_sys_TestDirArchive $( dirname $2 )
1070	#
1071	# USUAL WAY
1072	# add dmfind/dmget (to demigrate all offline files) :
1073	#dmfind $1 -state MIG -o -state OFL -o -state PAR \| dmget
1074	ccc_hsm get -r $1
1075
1076	i=0
1077	while [ $i -lt $NB_ESSAI ] ; do
1078	\cp -ur $1 $2 >> out_rsync 2>&1
1079	status=$?
1080	if [ ${status} -gt 0 ]; then
1081	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}"
1082	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again."
1083	sleep $DELAI
1084	else
1085	break
1086	fi
1087	(( i = i + 1 ))
1088	done
1089
1090	if [ ${status} -gt 0 ] ; then
1091	echo "IGCM_sys_Get_Dir : error."
1092	cat out_rsync
1093	IGCM_debug_Exit "IGCM_sys_Get_Dir"
1094	else
1095	\rm out_rsync
1096	fi
1097	else
1098	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1099	fi
1100	IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1101	}
1102
1103	#D-#==================================================
1104	#D-function IGCM_sys_Get_Master
1105	#D-* Purpose: Copy a complete directory from MASTER filesystem
1106	#D-* Examples:
1107	#D-
1108	function IGCM_sys_Get_Master {
1109	IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1110	if ( $DEBUG_sys ) ; then
1111	echo "IGCM_sys_Get_Master :" $@
1112	fi
1113	if [ $DRYRUN = 0 ]; then
1114	if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1115	echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1116	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1117	return
1118	fi
1119
1120	typeset NB_ESSAI DELAI status i
1121	# number of tentative
1122	NB_ESSAI=3
1123	# time delay between tentative
1124	DELAI=2
1125
1126	i=0
1127	while [ $i -lt $NB_ESSAI ] ; do
1128	\cp -urL $1 $2 > out_rsync 2>&1
1129	status=$?
1130	if [ ${status} -gt 0 ]; then
1131	IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
1132	IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
1133	sleep $DELAI
1134	else
1135	break
1136	fi
1137	(( i = i + 1 ))
1138	done
1139
1140	if [ ${status} -gt 0 ] ; then
1141	echo "IGCM_sys_Get_Master : error."
1142	cat out_rsync
1143	IGCM_debug_Exit "IGCM_sys_Get_Master"
1144	else
1145	\rm out_rsync
1146	fi
1147	else
1148	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1149	fi
1150	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1151	}
1152
1153	#====================================================
1154	#- Call IGCM_sys_Mirror_libIGCM now !
1155	if ( $MirrorlibIGCM ) ; then
1156	IGCM_sys_Mirror_libIGCM
1157	fi
1158
1159	#D-#==================================================
1160	#D-function IGCM_sys_Put_Rest
1161	#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1162	#D- File and target directory must exist.
1163	#D-* Examples:
1164	#D-
1165	function IGCM_sys_Put_Rest {
1166	IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1167	if ( $DEBUG_sys ) ; then
1168	echo "IGCM_sys_Put_Rest :" $@
1169	fi
1170	if [ $DRYRUN = 0 ]; then
1171	if [ ! -f ${1} ] ; then
1172	echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1173	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1174	fi
1175
1176	typeset status
1177	#
1178	if [ X${JobType} = XRUN ] ; then
1179	IGCM_sys_Chmod 444 ${1}
1180	fi
1181
1182	#
1183	# USUAL WAY
1184	\cp $1 $2 > out_rsync 2>&1
1185	status=$?
1186
1187	# #RSYNC WITH NETWORK SSH CALL
1188	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1189	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1190
1191	# #RSYNC WITH NFS USE
1192	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1193	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1194
1195	# status=$?
1196	# IGCM_sys_Rsync_out $status
1197
1198	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1199	# (( status=status+$? ))
1200
1201	if [ ${status} -gt 0 ] ; then
1202	echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
1203	cat out_rsync
1204	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1205	else
1206	\rm out_rsync
1207	fi
1208	else
1209	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1210	fi
1211	IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1212	}
1213
1214	#D-#==================================================
1215	#D-function IGCM_sys_PutBuffer_Rest
1216	#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1217	#D- File and target directory must exist.
1218	#D-* Examples:
1219	#D-
1220	function IGCM_sys_PutBuffer_Rest {
1221	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1222	if ( $DEBUG_sys ) ; then
1223	echo "IGCM_sys_PutBuffer_Rest :" $@
1224	fi
1225	if [ $DRYRUN = 0 ]; then
1226	if [ ! -f ${1} ] ; then
1227	echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1228	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1229	fi
1230
1231	typeset status
1232	#
1233	if [ X${JobType} = XRUN ] ; then
1234	IGCM_sys_Chmod 444 ${1}
1235	fi
1236
1237	#
1238	# USUAL WAY
1239	\cp $1 $2 > out_rsync 2>&1
1240	status=$?
1241
1242	if [ ${status} -gt 0 ] ; then
1243	echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
1244	cat out_rsync
1245	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1246	else
1247	\rm out_rsync
1248	fi
1249	else
1250	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1251	fi
1252	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1253	}
1254
1255	#D-#==================================================
1256	#D-function IGCM_sys_Put_Out
1257	#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1258	#D-* Examples:
1259	#D-
1260	function IGCM_sys_Put_Out {
1261	IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1262	if ( $DEBUG_sys ) ; then
1263	echo "IGCM_sys_Put_Out :" $@
1264	fi
1265
1266	typeset NB_ESSAI DELAI status i exist skip
1267
1268	# number of tentative
1269	NB_ESSAI=3
1270	# time delay between tentative
1271	DELAI=2
1272
1273	if [ $DRYRUN = 0 ]; then
1274	if [ ! -f ${1} ] ; then
1275	echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1276	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1277	return 1
1278	fi
1279	#
1280	IGCM_sys_MkdirArchive $( dirname $2 )
1281	#
1282
1283	#=====================================================
1284	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1285	#=====================================================
1286
1287	#echo ${2} \| grep "${R_OUT}" > /dev/null 2>&1
1288	#if [ $? -eq 0 ] ; then
1289	# typeset WORKPATH FILEPATH
1290	# WORKPATH=$( dirname $2 \| sed -e "s\|${R_OUT}\|${R_BUF}\|" )
1291	# IGCM_sys_MkdirWork ${WORKPATH}
1292	# FILEPATH=${WORKPATH}/$( basename $2 )
1293	# #
1294	# IGCM_sys_Cp ${1} ${FILEPATH}
1295	#fi
1296
1297	if [ X${JobType} = XRUN ] ; then
1298	if [ X${3} = X ] ; then
1299	IGCM_sys_Chmod 444 ${1}
1300	fi
1301	fi
1302	#
1303
1304	exist=false
1305	skip=false
1306	if [ -f $2 ] ; then
1307	IGCM_debug_Print 1 "$2 already exist"
1308	#dmget $2
1309	ccc_hsm get $2
1310	exist=true
1311	if [ "X$( diff $1 $2 )" = X ] ; then
1312	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1313	skip=true
1314	else
1315	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1316	skip=false
1317	fi
1318	fi
1319	#
1320	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1321	IGCM_sys_Chmod u+w $2
1322	fi
1323
1324	if [ X${skip} = Xfalse ] ; then
1325	i=0
1326	while [ $i -lt $NB_ESSAI ] ; do
1327	# USUAL WAY
1328	\cp $1 $2 > out_rsync 2>&1
1329	status=$?
1330	if [ ${status} -gt 0 ]; then
1331	IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1332	IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1333	sleep $DELAI
1334	else
1335	break
1336	fi
1337	(( i = i + 1 ))
1338	done
1339	fi
1340
1341	# #RSYNC WITH NETWORK SSH CALL
1342	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1343	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1344
1345	# #RSYNC WITH NFS USE
1346	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1347	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1348
1349	# status=$?
1350	# IGCM_sys_Rsync_out $status
1351
1352	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1353	# (( status=status+$? ))
1354
1355	if [ ${status} -gt 0 ] ; then
1356	echo "IGCM_sys_Put_Out : error."
1357	cat out_rsync
1358	IGCM_debug_Exit "IGCM_sys_Put_Out"
1359	else
1360	\rm out_rsync
1361	fi
1362	else
1363	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1364	fi
1365	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1366	return 0
1367	}
1368
1369	#D-#==================================================
1370	#D-function IGCM_sys_PutBuffer_Out
1371	#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1372	#D-* Examples:
1373	#D-
1374	function IGCM_sys_PutBuffer_Out {
1375	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1376	if ( $DEBUG_sys ) ; then
1377	echo "IGCM_sys_PutBuffer_Out :" $@
1378	fi
1379
1380	typeset NB_ESSAI DELAI status i exist skip
1381
1382	# number of tentative
1383	NB_ESSAI=3
1384	# time delay between tentative
1385	DELAI=2
1386
1387	if [ $DRYRUN = 0 ]; then
1388	if [ ! -f ${1} ] ; then
1389	echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1390	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1391	return 1
1392	fi
1393	#
1394	IGCM_sys_Mkdir $( dirname $2 )
1395	#
1396
1397	if [ X${JobType} = XRUN ] ; then
1398	if [ X${3} = X ] ; then
1399	IGCM_sys_Chmod 444 ${1}
1400	fi
1401	fi
1402
1403	exist=false
1404	skip=false
1405	if [ -f $2 ] ; then
1406	IGCM_debug_Print 1 "$2 already exist"
1407	exist=true
1408	if [ "X$( diff $1 $2 )" = X ] ; then
1409	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1410	skip=true
1411	else
1412	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1413	skip=false
1414	fi
1415	fi
1416	#
1417	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1418	IGCM_sys_Chmod u+w $2
1419	fi
1420
1421	if [ X${skip} = Xfalse ] ; then
1422	i=0
1423	while [ $i -lt $NB_ESSAI ] ; do
1424	# USUAL WAY
1425	\cp $1 $2 > out_rsync 2>&1
1426	status=$?
1427	if [ ${status} -gt 0 ]; then
1428	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1429	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
1430	sleep $DELAI
1431	else
1432	break
1433	fi
1434	(( i = i + 1 ))
1435	done
1436	fi
1437
1438	if [ ${status} -gt 0 ] ; then
1439	echo "IGCM_sys_PutBuffer_Out : error."
1440	cat out_rsync
1441	IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1442	else
1443	\rm out_rsync
1444	fi
1445	else
1446	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1447	fi
1448	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1449	return 0
1450	}
1451
1452	#D-#==================================================
1453	#D-function IGCM_sys_Get
1454	#D-* Purpose: Get a file from ${ARCHIVE}
1455	#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1456	#D- IGCM_sys_Get /l Array_contain_myfiles /destpath/
1457	function IGCM_sys_Get {
1458	IGCM_debug_PushStack "IGCM_sys_Get" $@
1459
1460	typeset DEST dm_liste ifile target file_work
1461	typeset NB_ESSAI DELAI status i
1462
1463	if ( $DEBUG_sys ) ; then
1464	echo "IGCM_sys_Get :" $@
1465	fi
1466
1467	# number of tentative
1468	NB_ESSAI=3
1469	# time delay between tentative
1470	DELAI=2
1471
1472	if [ $DRYRUN -le 2 ]; then
1473	if [ X${1} = X'/l' ] ; then
1474	# test if the first file is present in the old computation :
1475	eval set +A dm_liste \${${2}}
1476	else
1477	eval set +A dm_liste ${1}
1478	fi
1479	eval DEST=\${${#}}
1480
1481	#=====================================================
1482	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1483	#=====================================================
1484
1485	# Is it an R_OUT file (not R_IN) ?
1486	#echo ${dm_liste[0]} \| grep "${R_OUT}" > /dev/null 2>&1
1487	#if [ $? -eq 0 ] ; then
1488	# # Yes ? then we try to get it in SCRATCHDIR
1489	# set +A file_work $( echo ${dm_liste[*]} \| sed -e "s\|${R_OUT}\|${R_BUF}\|g" )
1490	# if [ -f ${file_work[0]} ] ; then
1491	# IGCM_sys_Cp ${file_work[*]} ${DEST}
1492	# IGCM_debug_PopStack "IGCM_sys_Get"
1493	# return
1494	# fi
1495	#fi
1496
1497	ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1498	status=$?
1499	if [ ${status} -gt 0 ] ; then
1500	echo "WARNING IGCM_sys_Get : error code ${status}"
1501	cat out_rsync
1502	echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1503	fi
1504
1505	#if [ ${status} -gt 0 ] ; then
1506	# if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then
1507	# cat out_rsync
1508	# echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1509	# sleep 30
1510	# echo "We try another time"
1511	## dmget ${dm_liste[*]} > out_rsync 2>&1
1512	# ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1513	# status=$?
1514	# if [ ${status} -gt 0 ] ; then
1515	# echo "ERROR IGCM_sys_Get : again demigration error :"
1516	# cat out_rsync
1517	# IGCM_debug_Exit "IGCM_sys_Get"
1518	# fi
1519	# else
1520	# echo "ERROR IGCM_sys_Get : demigration error :"
1521	# cat out_rsync
1522	# IGCM_debug_Exit "IGCM_sys_Get"
1523	# fi
1524	#fi
1525
1526	# #RSYNC WITH NETWORK SSH CALL
1527	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1
1528	# ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1
1529
1530	# #RSYNC WITH NFS USE
1531	# echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1
1532	# ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1
1533
1534	# status=$?
1535	# IGCM_sys_Rsync_out $status
1536
1537	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1538	# (( status=status+$? ))
1539
1540	#USUAL WAY
1541	if [ X${1} = X'/l' ] ; then
1542	for target in ${dm_liste[*]} ; do
1543	local_file=$( basename ${target} )
1544	# test if the target file is present before the loop
1545	IGCM_sys_TestFileArchive ${target}
1546	status=$?
1547	if [ ${status} -gt 0 ] ; then
1548	echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1549	IGCM_debug_Exit "IGCM_sys_Get"
1550	else
1551	i=0
1552	while [ $i -lt $NB_ESSAI ] ; do
1553	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1554	status=$?
1555	if [ ${status} -gt 0 ]; then
1556	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1557	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1558	sleep $DELAI
1559	else
1560	break
1561	fi
1562	(( i = i + 1 ))
1563	done
1564	if [ ${status} -gt 0 ] ; then
1565	echo "IGCM_sys_Get : error"
1566	cat out_rsync
1567	\rm out_rsync
1568	IGCM_debug_Exit "IGCM_sys_Get"
1569	else
1570	\rm out_rsync
1571	fi
1572	fi
1573	done
1574	else
1575	i=0
1576	while [ $i -lt $NB_ESSAI ] ; do
1577	\cp ${dm_liste} ${DEST} >> out_rsync 2>&1
1578	status=$?
1579	if [ ${status} -gt 0 ]; then
1580	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1581	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1582	sleep $DELAI
1583	else
1584	break
1585	fi
1586	(( i = i + 1 ))
1587	done
1588	if [ ${status} -gt 0 ] ; then
1589	echo "IGCM_sys_Get : error"
1590	cat out_rsync
1591	\rm out_rsync
1592	IGCM_debug_Exit "IGCM_sys_Get"
1593	else
1594	\rm out_rsync
1595	fi
1596	fi
1597	else
1598	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1599	fi
1600	IGCM_debug_PopStack "IGCM_sys_Get"
1601	}
1602
1603	#D-#==================================================
1604	#D-function IGCM_sys_GetBuffer
1605	#D-* Purpose: Get a file from ${SCRATCHDIR}
1606	#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1607	#D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1608	function IGCM_sys_GetBuffer {
1609	IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1610
1611	typeset DEST buf_liste ifile target file_work
1612	typeset NB_ESSAI DELAI status i
1613
1614	if ( $DEBUG_sys ) ; then
1615	echo "IGCM_sys_GetBuffer :" $@
1616	fi
1617
1618	# number of tentative
1619	NB_ESSAI=3
1620	# time delay between tentative
1621	DELAI=2
1622
1623	if [ $DRYRUN -le 2 ]; then
1624	if [ X${1} = X'/l' ] ; then
1625	# test if the first file is present in the old computation :
1626	eval set +A buf_liste \${${2}}
1627	else
1628	eval set +A buf_liste ${1}
1629	fi
1630	eval DEST=\${${#}}
1631
1632	#USUAL WAY
1633	if [ X${1} = X'/l' ] ; then
1634	for target in ${buf_liste[*]} ; do
1635	local_file=$( basename ${target} )
1636	i=0
1637	while [ $i -lt $NB_ESSAI ] ; do
1638	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1639	status=$?
1640	if [ ${status} -gt 0 ]; then
1641	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1642	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1643	sleep $DELAI
1644	else
1645	break
1646	fi
1647	(( i = i + 1 ))
1648	done
1649	if [ ${status} -gt 0 ] ; then
1650	echo "IGCM_sys_Get : error"
1651	cat out_rsync
1652	\rm out_rsync
1653	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1654	else
1655	\rm out_rsync
1656	fi
1657	done
1658	else
1659	i=0
1660	while [ $i -lt $NB_ESSAI ] ; do
1661	\cp ${buf_liste} ${DEST} >> out_rsync 2>&1
1662	status=$?
1663	if [ ${status} -gt 0 ]; then
1664	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1665	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1666	sleep $DELAI
1667	else
1668	break
1669	fi
1670	(( i = i + 1 ))
1671	done
1672	if [ ${status} -gt 0 ] ; then
1673	echo "IGCM_sys_Get : error"
1674	cat out_rsync
1675	\rm out_rsync
1676	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1677	else
1678	\rm out_rsync
1679	fi
1680	fi
1681	else
1682	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1683	fi
1684	IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1685	}
1686
1687	#D-#==================================================
1688	#D-function IGCM_sys_GetDate_FichWork
1689	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1690	#D-* Examples:
1691	#D-
1692	function IGCM_sys_GetDate_FichWork {
1693	IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1694	if ( $DEBUG_sys ) ; then
1695	echo "IGCM_sys_GetDate_FichWork :" $@
1696	fi
1697	typeset dateF
1698	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1699	eval ${2}=${dateF[5]}
1700
1701	# donne la date filesys d'un fichier sur la machine work
1702	IGCM_debug_PopStack "IGCM_sys_FichWork"
1703	}
1704
1705	#D-#==================================================
1706	#D-function IGCM_sys_GetDate_FichArchive
1707	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1708	#D-* Examples:
1709	#D-
1710	function IGCM_sys_GetDate_FichArchive {
1711	IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1712	if ( $DEBUG_sys ) ; then
1713	echo "IGCM_sys_GetDate_FichArchive :" $@
1714	fi
1715	typeset dateF
1716	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1717	eval ${2}=${dateF[5]}
1718
1719	IGCM_debug_PopStack "IGCM_sys_FichArchive"
1720	}
1721
1722	#D-#==================================================
1723	#D-function IGCM_sys_Dods_Rm
1724	#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1725	#D-* Examples:
1726	#D-
1727	function IGCM_sys_Dods_Rm {
1728	if ( $DEBUG_sys ) ; then
1729	echo "IGCM_sys_Dods_Rm :" $@
1730	fi
1731	typeset status
1732	if [ $DRYRUN = 0 ]; then
1733
1734	# if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1735	# echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1736	# echo "Nothing has been done."
1737	# return
1738	# fi
1739
1740	/ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1741	status=$?
1742
1743	# if [ ${status} -gt 0 ] ; then
1744	# echo "IGCM_sys_Dods_Rm : error."
1745	# cat out_dods_rm
1746	# IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1747	# else
1748	# rm out_dods_rm
1749	# fi
1750
1751	else
1752	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1753	fi
1754	return $status
1755	}
1756
1757	#D-#==================================================
1758	#D-function IGCM_sys_Dods_Cp
1759	#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1760	#D-* Examples:
1761	#D-
1762	function IGCM_sys_Dods_Cp {
1763	if ( $DEBUG_sys ) ; then
1764	echo "IGCM_sys_Dods_Cp :" $@
1765	fi
1766	typeset status
1767	if [ $DRYRUN = 0 ]; then
1768
1769	# if [ ! -d ${R_SAVE}/${1} ] ; then
1770	# echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1771	# echo "Nothing has been done."
1772	# return
1773	# fi
1774
1775	/ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1776	status=$?
1777
1778	# if [ ${status} -gt 0 ] ; then
1779	# echo "IGCM_sys_Dods_Cp : error."
1780	# cat out_dods_cp
1781	# IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1782	# else
1783	# rm out_dods_cp
1784	# fi
1785
1786	else
1787	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1788	fi
1789	return $status
1790	}
1791
1792	#D-#==================================================
1793	#D-function IGCM_sys_Put_Dods
1794	#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1795	#D-* Examples:
1796	#D-
1797	function IGCM_sys_Put_Dods {
1798	IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1799	if ( $DEBUG_sys ) ; then
1800	echo "IGCM_sys_Put_Dods :" $@
1801	fi
1802	#set -vx
1803	typeset status
1804	if [ $DRYRUN = 0 ]; then
1805	if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1806	echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1807	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1808	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1809	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1810	return
1811	fi
1812
1813	if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1814	echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1815	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1816	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1817	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1818	return
1819	fi
1820	#
1821	if [ -d ${R_SAVE}/${1} ] ; then
1822	cd ${R_SAVE}
1823	elif [ -d ${R_FIGR}/${1} ] ; then
1824	cd ${R_FIGR}
1825	fi
1826
1827	IGCM_sys_Dods_Rm ${1}
1828	IGCM_sys_Dods_Cp ${1}
1829	status=0
1830
1831	if [ ${status} -gt 0 ] ; then
1832	echo "IGCM_sys_Put_Dods : error."
1833	IGCM_debug_Exit "IGCM_sys_Put_Dods"
1834	fi
1835	else
1836	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1837	fi
1838	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1839	}
1840
1841	##############################################################
1842	# REBUILD OPERATOR
1843
1844	function IGCM_sys_rebuild {
1845	IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1846	if ( $DEBUG_sys ) ; then
1847	echo "IGCM_sys_rebuild :" $@
1848	fi
1849
1850	typeset NB_ESSAI DELAI status i lastArg
1851	# number of tentative
1852	NB_ESSAI=3
1853	# time delay between tentative
1854	DELAI=2
1855
1856	i=0
1857	while [ $i -lt $NB_ESSAI ] ; do
1858	/home/cont003/p86ipsl/X64/bin/rebuild -f -o $@ > out_rsync 2>&1
1859	status=$?
1860	if [ ${status} -gt 0 ] ; then
1861	IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
1862	cat out_rsync
1863	\rm out_rsync
1864	IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
1865	eval lastArg=\$$#
1866	\rm ${lastArg}
1867	else
1868	\rm out_rsync
1869	break
1870	fi
1871	(( i = i + 1 ))
1872	done
1873
1874	if [ ${status} -gt 0 ] ; then
1875	echo "IGCM_sys_rebuild : rebuild error"
1876	IGCM_debug_Exit "rebuild"
1877	fi
1878
1879	IGCM_debug_PopStack "IGCM_sys_rebuild"
1880	}
1881
1882	function IGCM_sys_rebuild_station {
1883	IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1884	typeset i list_opt file_in file_out prefix_invert list_invert
1885	if ( $DEBUG_sys ) ; then
1886	echo "IGCM_sys_rebuild_station :" $@
1887	fi
1888	list_opt=$@
1889
1890	# Invert Axis : t,x -> x,t
1891	# t,pres,x -> x,t,pres
1892	# So that we can concatenate along x
1893	i=0
1894	for file_in in ${list_opt} ; do
1895	(( i = i + 1))
1896	[ ${i} = 1 ] && file_out=${file_in} && continue
1897	prefix_invert=$( basename ${file_in} .nc )
1898	IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1899	list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1900	done
1901
1902	# Concatenate
1903	IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1904
1905	# Re-ivert file
1906	IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1907
1908	# Station re-ordering is too expansive to be run within libICGM
1909	# This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1910	# This re-ordering must be done "in memory" by the cmorization process
1911	# Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1912	# BEGIN reordering
1913
1914	# Only LMDZ text output contains the exact ordering of the station.
1915	# We isolate this in the code below:
1916	# 0 38 -157.5000000000000 70.98591549295774
1917	# 0 54 27.49999999999999 67.18309859154928
1918	# 0 56 -62.50000000000001 82.39436619718309
1919	# 0 79 12.49999999999999 78.59154929577466
1920	# 0 116 -165.0000000000000 76.05633802816901
1921	# 0 117 130.0000000000000 70.98591549295774
1922	# 0 118 110.0000000000000 87.46478873239437
1923	# 1 40 4.999999999999995 51.97183098591550
1924	# typeset iStation iProc list_opt file_in file_out prefix_invert
1925	# typeset -Z4 j4
1926	# typeset -Z3 j3
1927
1928	# unset list_opt
1929	# set +A list_opt $@
1930
1931	# Filename after rebuild
1932	# file_out=${list_opt[0]}
1933	# Prefix of output files
1934	# prefix_invert=$( basename ${file_out} .nc )
1935	# Number of procs
1936	# num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} \| wc -l )
1937
1938	# iProc=0
1939	# while [ ${iProc} -lt ${num_proc} ] ; do
1940	# Array containing Station as a number
1941	# unset proc_stn
1942	# set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} \| sed -e "s/iophy_mpi rank ip lon lat //g" \| awk ' {print $2}' )
1943	# Number of stations produced by processor proc
1944	# stationLast=${#proc_stn[*]}
1945	# Proc number on 4 digits
1946	# j4=${iProc}
1947	# Init
1948	# iStation=0
1949	# while [ ${iStation} -lt ${stationLast} ] ; do
1950	# Station number on 3 digits
1951	# j3=${proc_stn[${iStation}]}
1952	# Extract station
1953	# Invert Axis : t,x -> x,t
1954	# t,pres,x -> x,t,pres
1955	# So that we can concatenate along x
1956	# IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1957	# (( iStation = iStation + 1 ))
1958	# done
1959	# (( iProc = iProc + 1 ))
1960	# done
1961
1962	# Concatenate all station along x
1963	# IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1964
1965	# Re-invert file
1966	# IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1967
1968	# END reordering
1969
1970	IGCM_debug_PopStack "IGCM_sys_rebuild_station"
1971	}
1972
1973	############################################################
1974	# Activate Running Environnment Variables
1975
1976	function IGCM_sys_activ_variables {
1977	IGCM_debug_PushStack "IGCM_sys_activ_variables"
1978	if ( $DEBUG_sys ) ; then
1979	echo "IGCM_sys_activ_variables"
1980	fi
1981
1982	ulimit -s unlimited
1983
1984	export KMP_STACKSIZE=3g
1985	export KMP_LIBRARY=turnaround
1986	export MKL_SERIAL=YES
1987	unset MPI_PLACING_MODE
1988
1989	# add module load nb of threads for core placement
1990	(( max_omp = 0 ))
1991
1992	for comp in ${config_ListOfComponents[*]} ; do
1993	eval ExeNameIn=\${config_Executable_${comp}[0]}
1994	eval ExeNameOut=\${config_Executable_${comp}[1]}
1995
1996	# Only if we really have an executable for the component :
1997	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
1998	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
1999	if [ ${comp_proc_omp_loc} -gt ${max_omp} ] ; then
2000	(( max_omp = comp_proc_omp_loc ))
2001	fi
2002	fi
2003	done
2004
2005	( [ X${max_omp} = X4 ] \|\| [ X${max_omp} = X8 ] ) && { module load openmp/${max_omp}thds ; IGCM_debug_Print 1 "module load openmp/${max_omp}thds" ; }
2006
2007	IGCM_debug_PopStack "IGCM_sys_activ_variables"
2008	}
2009
2010	############################################################
2011	# Desactivate Running Environnment Variables
2012
2013	function IGCM_sys_desactiv_variables {
2014	IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
2015	if ( $DEBUG_sys ) ; then
2016	echo "IGCM_sys_desactiv_variables"
2017	fi
2018	IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
2019	}
2020
2021	############################################################
2022	# Build MPI/OMP scripts run file (dummy function)
2023
2024	function IGCM_sys_build_run_file {
2025
2026	IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
2027
2028	}
2029
2030	############################################################
2031	# Build MPI/OMP scripts
2032	function IGCM_sys_build_execution_scripts
2033	{
2034	IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
2035	if ( $DEBUG_sys ) ; then
2036	echo "IGCM_sys_build_execution_scripts " $@
2037	fi
2038	typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut
2039	typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc
2040	typeset num_corempi nombre_restant_node nombre_restant_comp
2041	typeset IGCM_OMP
2042
2043	if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then
2044	IGCM_debug_Exit "IGCM_sys_titane build_execution_scripts : Job_${config_UserChoices_JobName} doesn't exist in SUBMIT_DIR : ${SUBMIT_DIR} "
2045	fi
2046
2047	if ( ${OK_PARA_MPMD} ) ; then
2048
2049	if [ -f run_file ] ; then
2050	IGCM_sys_Rm -f run_file
2051	fi
2052	touch run_file
2053
2054	if ( ${OK_PARA_OMP} ) ; then
2055
2056	# Hosts treatment
2057
2058	${HOST_MPIRUN_COMMAND} hostname \| sort \| uniq > hosts.tmp
2059
2060	i=0
2061	rm -f hosts
2062	IGCM_debug_Print 1 "sys Titane, Hosts avaible :"
2063	for nodes in `cat hosts.tmp` ; do
2064	host[$i]=$nodes
2065	echo "${host[$i]} slots=8 max_slots=8" >> hosts
2066	IGCM_debug_Print 1 ${host[$i]}
2067	i=$((i+1))
2068	done
2069	rm -f hosts.tmp
2070
2071	listnodes=${host[*]}
2072
2073	EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts"
2074
2075	# Initialisation
2076
2077	init_node=y
2078	node_num_current=0
2079	start_num=0
2080	init_exec=n
2081
2082	# Test : if oasis is there, we put it at the first position
2083
2084	for comp in ${config_ListOfComponents[*]} ; do
2085
2086	if [ "X${comp}" = "XCPL" ] ; then
2087
2088	eval ExeNameIn=\${config_Executable_${comp}[0]}
2089	eval ExeNameOut=\${config_Executable_${comp}[1]}
2090
2091	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2092	echo "" >> script_${ExeNameOut}.ksh
2093	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
2094	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
2095	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
2096	echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2097	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2098
2099	init_node=n
2100
2101	(( nombre_restant_node = NUM_COREPERNODE - 1 ))
2102	node_num_current=0
2103	node_current=${host[${node_num_current}]}
2104
2105	EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh"
2106
2107	init_exec=y
2108	start_num=1
2109
2110	fi
2111
2112	done
2113
2114	# Then loop on the components (except for oasis)
2115
2116	for comp in ${config_ListOfComponents[*]} ; do
2117
2118	eval ExeNameIn=\${config_Executable_${comp}[0]}
2119	eval ExeNameOut=\${config_Executable_${comp}[1]}
2120
2121	# Only if we really have an executable for the component :
2122	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2123
2124	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2125	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2126
2127	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2128	# echo "set -vx" >> script_${ExeNameOut}.ksh
2129	echo "" >> script_${ExeNameOut}.ksh
2130	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
2131	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
2132	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
2133	echo "export OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2134	echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh
2135	echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh
2136	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2137
2138	node_num=0
2139
2140	# We define the number of MPI process to be assigned for the component
2141
2142	nombre_restant_comp=${comp_proc_mpi_loc}
2143
2144	# Loop on the allocated nodes
2145
2146	for node in ${listnodes} ; do
2147
2148	# We go to the current node
2149	if [ ${node_num} = ${node_num_current} ] ; then
2150
2151	node_current=${host[${node_num_current}]}
2152
2153	# If first time on the node : initialisation
2154
2155	if [ ${init_node} = y ] ; then
2156	nombre_restant_node=${NUM_COREPERNODE}
2157	fi
2158
2159	# Test on the number of OMP threads
2160
2161	if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then
2162	(( node_num = node_num + 1 ))
2163	node_num_current=${node_num}
2164	init_node=y
2165	continue
2166	fi
2167
2168	# Number of MPI process to assign
2169
2170	(( num_corempi = nombre_restant_node / comp_proc_omp_loc ))
2171
2172	if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then
2173	num_corempi=${nombre_restant_comp}
2174	fi
2175
2176	(( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc ))
2177	(( nombre_restant_comp = nombre_restant_comp - num_corempi ))
2178
2179	if [ ${init_exec} = y ] ; then
2180	EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh"
2181	else
2182	EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh"
2183	init_exec=y
2184	fi
2185
2186	(( start_num = num_corempi + start_num ))
2187
2188	else
2189
2190	(( node_num = node_num + 1 ))
2191	continue
2192	fi
2193
2194	# Test on the number of core/process remaining on the node/component
2195
2196	if [ ${nombre_restant_node} = 0 ] ; then
2197	(( node_num = node_num + 1 ))
2198	node_num_current=${node_num}
2199	init_node=y
2200
2201	if [ ${nombre_restant_comp} = 0 ] ; then
2202	break 1
2203	fi
2204	else
2205
2206	node_num_current=${node_num}
2207	init_node=n
2208
2209	if [ ${nombre_restant_comp} = 0 ] ; then
2210	break 1
2211	fi
2212	fi
2213	done
2214	fi
2215	done
2216
2217	else
2218
2219	# Then first loop on the components for the coupler ie oasis
2220
2221	## the coupler ie oasis must be the first one
2222	for comp in ${config_ListOfComponents[*]} ; do
2223
2224	eval ExeNameOut=\${config_Executable_${comp}[1]}
2225
2226	# for CPL component only
2227	if [ "X${comp}" = "XCPL" ] ; then
2228	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2229	echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file
2230	fi
2231	done
2232
2233	# Then second loop on the components
2234
2235	for comp in ${config_ListOfComponents[*]} ; do
2236
2237	eval ExeNameOut=\${config_Executable_${comp}[1]}
2238
2239	# Only if we really have an executable for the component and not the coupler ie oasis:
2240	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2241	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2242	echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2243	fi
2244	done
2245	IGCM_sys_Chmod u+x run_file
2246
2247	EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file"
2248
2249	fi
2250
2251	else # Only one executable.
2252	# Check has to be added with :
2253	# Job :
2254	# #MSUB -n 8 # reservation des processeurs pour le job
2255	# #MSUB -N 4 # reservation des nodes pour le job
2256	# BATCH_NUM_PROC_TOT=32
2257	#
2258	# config.card :
2259	# ATM= (gcm.e, lmdz.x, 8MPI, 4OMP)
2260	#
2261	# tested with :
2262	# Job :
2263	# #MSUB -n 32
2264	# BATCH_NUM_PROC_TOT=32
2265	#
2266	# config.card :
2267	# ATM= (gcm.e, lmdz.x)
2268
2269
2270	for comp in ${config_ListOfComponents[*]} ; do
2271
2272	# Only if we really have an executable for the component :
2273	eval ExeNameOut=\${config_Executable_${comp}[1]}
2274	### if ( [ "X${ExeNameOut}" != X\"\" ] ) ; then
2275	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2276
2277	IGCM_OMP=1
2278
2279	if ( ${OK_PARA_OMP} ) ; then
2280	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2281	export OMP_NUM_THREADS=${comp_proc_omp_loc}
2282	IGCMG_OMP=${comp_proc_omp_loc}
2283	fi
2284	if ( ${OK_PARA_MPI} ) ; then
2285	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2286	# Default : mpirun used if nb_proc gt 1
2287	# pour sortie out/err par process ? more test required
2288	# echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh
2289	EXECUTION="${HOST_MPIRUN_COMMAND} -np ${comp_proc_mpi_loc} ./${ExeNameOut}"
2290	else
2291	# Check if BATCH_NUM_PROC_TOT = IGCMG_OMP
2292	if ( [ ${IGCM_OMP} -ne ${BATCH_NUM_PROC_TOT} ] ) ; then
2293	IGCM_debug_Print 1 "sys Titane : BATCH_NUM_PROC_TOT <> ${comp}_PROC_OMP : ${BATCH_NUM_PROC_TOT} <> ${BRIDGE_MSUB_NPROC} "
2294	IGCM_debug_Print 1 "sys Titane : Check #MSUB -n xx into Job"
2295	IGCM_debug_Exit "IGCM_sys_build_execution_scripts"
2296	fi
2297	# Default : mpirun is NOT used if nb_proc eq 1
2298	# pour sortie out/err par process ? more test required
2299	# echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2300	EXECUTION="/usr/bin/time ./${ExeNameOut}"
2301	fi
2302	fi
2303	done
2304
2305	fi
2306
2307	IGCM_debug_Print 1 "sys Titane : La commande d execution est "
2308	IGCM_debug_Print 1 "$EXECUTION"
2309
2310	IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2311	}
2312
2313	############################################################
2314	# Check of space available on temporary filesytems
2315	function IGCM_sys_check_quota {
2316	IGCM_debug_PushStack "IGCM_sys_check_quota"
2317	if ( $DEBUG_sys ) ; then
2318	echo "IGCM_sys_check_quota "
2319	fi
2320	# Limit of quota (in %)
2321	limit_quota=90
2322
2323	# Check of the volume
2324	volume_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $2}')
2325	volume_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $3}')
2326
2327	if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then
2328
2329	unit_avail=${volume_avail: -1}
2330	unit_quota=${volume_quota: -1}
2331
2332	if [ "${unit_quota}" = "*" ] ; then
2333	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2334	IGCM_debug_Print 1 "More than 100% of your quota is used"
2335	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2336	IGCM_debug_Print 1 "You must have more than 10% available to run"
2337	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2338	IGCM_debug_Verif_Exit
2339	fi
2340
2341	temp_avail=${volume_avail%%${volume_avail: -1}*}
2342	temp_quota=${volume_quota%%${volume_quota: -1}*}
2343
2344	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2345
2346	# Convertion
2347	if [ ${volume_avail: -1} = "T" ] ; then
2348	(( temp_avail = temp_avail * 1000000000000 ))
2349	elif [ ${volume_avail: -1} = "G" ] ; then
2350	(( temp_avail = temp_avail * 1000000000 ))
2351	elif [ ${volume_avail: -1} = "M" ] ; then
2352	(( temp_avail = temp_avail * 1000000 ))
2353	elif [ ${volume_avail: -1} = "k" ] ; then
2354	(( temp_avail = temp_avail * 1000 ))
2355	else
2356	(( temp_avail = volume_avail ))
2357	fi
2358	if [ ${volume_quota: -1} = "T" ] ; then
2359	(( temp_quota = temp_quota * 1000000000000 ))
2360	elif [ ${volume_quota: -1} = "G" ] ; then
2361	(( temp_quota = temp_quota * 1000000000 ))
2362	elif [ ${volume_quota: -1} = "M" ] ; then
2363	(( temp_quota = temp_quota * 1000000 ))
2364	elif [ ${volume_quota: -1} = "k" ] ; then
2365	(( temp_quota = temp_quota * 1000 ))
2366	else
2367	(( temp_quota = volume_quota ))
2368	fi
2369	fi
2370
2371	quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2372	# echo "volume ratio is " $quota_volume
2373
2374	if [ ${quota_volume} -ge ${limit_quota} ] ; then
2375	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2376	IGCM_debug_Print 1 "${quota_volume}% of your quota is used"
2377	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2378	IGCM_debug_Print 1 "You must have more than 10% available to run"
2379	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2380	IGCM_debug_Verif_Exit
2381	fi
2382
2383	fi
2384
2385	# Check of the number of inodes
2386
2387	inode_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $6}')
2388	inode_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $7}')
2389
2390	if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then
2391
2392	unit_avail=${inode_avail: -1}
2393	unit_quota=${inode_quota: -1}
2394
2395	if [ "${unit_quota}" = "*" ] ; then
2396	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2397	IGCM_debug_Print 1 "More than 100% of your quota is used"
2398	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2399	IGCM_debug_Print 1 "You must have more than 10% available to run"
2400	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2401	IGCM_debug_Verif_Exit
2402	fi
2403
2404	temp_avail=${inode_avail%%${inode_avail: -1}*}
2405	temp_quota=${inode_quota%%${inode_quota: -1}*}
2406
2407	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2408
2409	# Convertion
2410	if [ ${inode_avail: -1} = "T" ] ; then
2411	(( temp_avail = temp_avail * 1000000000000 ))
2412	elif [ ${inode_avail: -1} = "G" ] ; then
2413	(( temp_avail = temp_avail * 1000000000 ))
2414	elif [ ${inode_avail: -1} = "M" ] ; then
2415	(( temp_avail = temp_avail * 1000000 ))
2416	elif [ ${inode_avail: -1} = "k" ] ; then
2417	(( temp_avail = temp_avail * 1000 ))
2418	else
2419	(( temp_avail = inode_avail ))
2420	fi
2421
2422	if [ ${inode_quota: -1} = "T" ] ; then
2423	(( temp_quota = temp_quota * 1000000000000 ))
2424	elif [ ${inode_quota: -1} = "G" ] ; then
2425	(( temp_quota = temp_quota * 1000000000 ))
2426	elif [ ${inode_quota: -1} = "M" ] ; then
2427	(( temp_quota = temp_quota * 1000000 ))
2428	elif [ ${inode_quota: -1} = "k" ] ; then
2429	(( temp_quota = temp_quota * 1000 ))
2430	else
2431	(( temp_quota = inode_quota ))
2432	fi
2433	fi
2434	quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2435	# echo "inode ratio is " $quota_inode
2436
2437	if [ ${quota_inode} -ge ${limit_quota} ] ; then
2438	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2439	IGCM_debug_Print 1 "${quota_inode}% of your quota is used"
2440	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2441	IGCM_debug_Print 1 "You must have more than 10% available to run"
2442	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2443	IGCM_debug_Verif_Exit
2444	fi
2445
2446	fi
2447	IGCM_debug_PopStack "IGCM_sys_check_quota"
2448	}
2449
2450	##############################################################
2451	# NCO OPERATOR
2452
2453	function IGCM_sys_ncap2 {
2454	IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2455	if ( $DEBUG_sys ) ; then
2456	echo "IGCM_sys_ncap2 :" $@
2457	fi
2458
2459	typeset NB_ESSAI DELAI status i
2460	# number of tentative
2461	NB_ESSAI=3
2462	# time delay between tentative
2463	DELAI=2
2464
2465	i=0
2466	while [ $i -lt $NB_ESSAI ] ; do
2467	ncap2 "$@" > out_rsync 2>&1
2468	status=$?
2469	if [ ${status} -gt 0 ] ; then
2470	IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2471	cat out_rsync
2472	\rm out_rsync
2473	IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2474	else
2475	\rm out_rsync
2476	break
2477	fi
2478	(( i = i + 1 ))
2479	done
2480
2481	if [ ${status} -gt 0 ] ; then
2482	echo "IGCM_sys_ncap2 : ncap2 error"
2483	IGCM_debug_Exit "ncap2"
2484	fi
2485
2486	IGCM_debug_PopStack "IGCM_sys_ncap2"
2487	}
2488
2489	function IGCM_sys_ncatted {
2490	IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2491	if ( $DEBUG_sys ) ; then
2492	echo "IGCM_sys_ncatted :" $@
2493	fi
2494
2495	typeset NB_ESSAI DELAI status i
2496	# number of tentative
2497	NB_ESSAI=3
2498	# time delay between tentative
2499	DELAI=2
2500
2501	i=0
2502	while [ $i -lt $NB_ESSAI ] ; do
2503	ncatted "$@" > out_rsync 2>&1
2504	status=$?
2505	if [ ${status} -gt 0 ] ; then
2506	IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2507	cat out_rsync
2508	\rm out_rsync
2509	IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2510	else
2511	\rm out_rsync
2512	break
2513	fi
2514	(( i = i + 1 ))
2515	done
2516
2517	if [ ${status} -gt 0 ] ; then
2518	echo "IGCM_sys_ncatted : ncatted error"
2519	IGCM_debug_Exit "ncatted"
2520	fi
2521
2522	IGCM_debug_PopStack "IGCM_sys_ncatted"
2523	}
2524
2525	function IGCM_sys_ncbo {
2526	IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2527	if ( $DEBUG_sys ) ; then
2528	echo "IGCM_sys_ncbo :" $@
2529	fi
2530
2531	typeset NB_ESSAI DELAI status i
2532	# number of tentative
2533	NB_ESSAI=3
2534	# time delay between tentative
2535	DELAI=2
2536
2537	i=0
2538	while [ $i -lt $NB_ESSAI ] ; do
2539	ncbo $@ > out_rsync 2>&1
2540	status=$?
2541	if [ ${status} -gt 0 ] ; then
2542	IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2543	cat out_rsync
2544	\rm out_rsync
2545	IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2546	else
2547	\rm out_rsync
2548	break
2549	fi
2550	(( i = i + 1 ))
2551	done
2552
2553	if [ ${status} -gt 0 ] ; then
2554	echo "IGCM_sys_ncbo : ncbo error"
2555	IGCM_debug_Exit "ncbo"
2556	fi
2557
2558	IGCM_debug_PopStack "IGCM_sys_ncbo"
2559	}
2560
2561	function IGCM_sys_ncdiff {
2562	IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2563	if ( $DEBUG_sys ) ; then
2564	echo "IGCM_sys_ncdiff :" $@
2565	fi
2566
2567	typeset NB_ESSAI DELAI status i
2568	# number of tentative
2569	NB_ESSAI=3
2570	# time delay between tentative
2571	DELAI=2
2572
2573	i=0
2574	while [ $i -lt $NB_ESSAI ] ; do
2575	ncdiff $@ > out_rsync 2>&1
2576	status=$?
2577	if [ ${status} -gt 0 ] ; then
2578	IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2579	cat out_rsync
2580	\rm out_rsync
2581	IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2582	else
2583	\rm out_rsync
2584	break
2585	fi
2586	(( i = i + 1 ))
2587	done
2588
2589	if [ ${status} -gt 0 ] ; then
2590	echo "IGCM_sys_ncdiff : ncdiff error"
2591	IGCM_debug_Exit "ncdiff"
2592	fi
2593
2594	IGCM_debug_PopStack "IGCM_sys_ncdiff"
2595	}
2596
2597	function IGCM_sys_ncea {
2598	IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2599	if ( $DEBUG_sys ) ; then
2600	echo "IGCM_sys_ncea :" $@
2601	fi
2602
2603	typeset NB_ESSAI DELAI status i
2604	# number of tentative
2605	NB_ESSAI=3
2606	# time delay between tentative
2607	DELAI=2
2608
2609	i=0
2610	while [ $i -lt $NB_ESSAI ] ; do
2611	ncea $@ > out_rsync 2>&1
2612	status=$?
2613	if [ ${status} -gt 0 ] ; then
2614	IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2615	cat out_rsync
2616	\rm out_rsync
2617	IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2618	else
2619	\rm out_rsync
2620	break
2621	fi
2622	(( i = i + 1 ))
2623	done
2624
2625	if [ ${status} -gt 0 ] ; then
2626	echo "IGCM_sys_ncea : ncea error"
2627	IGCM_debug_Exit "ncea"
2628	fi
2629
2630	IGCM_debug_PopStack "IGCM_sys_ncea"
2631	}
2632
2633	function IGCM_sys_ncecat {
2634	IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2635	if ( $DEBUG_sys ) ; then
2636	echo "IGCM_sys_ncecat :" $@
2637	fi
2638
2639	typeset NB_ESSAI DELAI status i
2640	# number of tentative
2641	NB_ESSAI=3
2642	# time delay between tentative
2643	DELAI=2
2644
2645	i=0
2646	while [ $i -lt $NB_ESSAI ] ; do
2647	ncecat $@ > out_rsync 2>&1
2648	status=$?
2649	if [ ${status} -gt 0 ] ; then
2650	IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2651	cat out_rsync
2652	\rm out_rsync
2653	IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2654	else
2655	\rm out_rsync
2656	break
2657	fi
2658	(( i = i + 1 ))
2659	done
2660
2661	if [ ${status} -gt 0 ] ; then
2662	echo "IGCM_sys_ncecat : ncecat error"
2663	IGCM_debug_Exit "ncecat"
2664	fi
2665
2666	IGCM_debug_PopStack "IGCM_sys_ncecat"
2667	}
2668
2669	function IGCM_sys_ncflint {
2670	IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2671	if ( $DEBUG_sys ) ; then
2672	echo "IGCM_sys_ncflint :" $@
2673	fi
2674
2675	typeset NB_ESSAI DELAI status i
2676	# number of tentative
2677	NB_ESSAI=3
2678	# time delay between tentative
2679	DELAI=2
2680
2681	i=0
2682	while [ $i -lt $NB_ESSAI ] ; do
2683	ncflint $@ > out_rsync 2>&1
2684	status=$?
2685	if [ ${status} -gt 0 ] ; then
2686	IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2687	cat out_rsync
2688	\rm out_rsync
2689	IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2690	else
2691	\rm out_rsync
2692	break
2693	fi
2694	(( i = i + 1 ))
2695	done
2696
2697	if [ ${status} -gt 0 ] ; then
2698	echo "IGCM_sys_ncflint : ncflint error"
2699	IGCM_debug_Exit "ncflint"
2700	fi
2701
2702	IGCM_debug_PopStack "IGCM_sys_ncflint"
2703	}
2704
2705	function IGCM_sys_ncks {
2706	IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2707	if ( $DEBUG_sys ) ; then
2708	echo "IGCM_sys_ncks :" $@
2709	fi
2710
2711	typeset NB_ESSAI DELAI status i
2712	# number of tentative
2713	NB_ESSAI=3
2714	# time delay between tentative
2715	DELAI=2
2716
2717	i=0
2718	while [ $i -lt $NB_ESSAI ] ; do
2719	ncks $@ > out_rsync 2>&1
2720	status=$?
2721	if [ ${status} -gt 0 ] ; then
2722	IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2723	cat out_rsync
2724	\rm out_rsync
2725	IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2726	else
2727	\rm out_rsync
2728	break
2729	fi
2730	(( i = i + 1 ))
2731	done
2732
2733	if [ ${status} -gt 0 ] ; then
2734	echo "IGCM_sys_ncks : ncks error"
2735	IGCM_debug_Exit "ncks"
2736	fi
2737
2738	IGCM_debug_PopStack "IGCM_sys_ncks"
2739	}
2740
2741	function IGCM_sys_ncpdq {
2742	IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2743	if ( $DEBUG_sys ) ; then
2744	echo "IGCM_sys_ncpdq :" $@
2745	fi
2746
2747	typeset NB_ESSAI DELAI status i
2748	# number of tentative
2749	NB_ESSAI=3
2750	# time delay between tentative
2751	DELAI=2
2752
2753	i=0
2754	while [ $i -lt $NB_ESSAI ] ; do
2755	ncpdq $@ > out_rsync 2>&1
2756	status=$?
2757	if [ ${status} -gt 0 ] ; then
2758	IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2759	cat out_rsync
2760	\rm out_rsync
2761	IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2762	else
2763	\rm out_rsync
2764	break
2765	fi
2766	(( i = i + 1 ))
2767	done
2768
2769	if [ ${status} -gt 0 ] ; then
2770	echo "IGCM_sys_ncpdq : ncpdq error"
2771	IGCM_debug_Exit "ncpdq"
2772	fi
2773
2774	IGCM_debug_PopStack "IGCM_sys_ncpdq"
2775	}
2776
2777	function IGCM_sys_ncra {
2778	IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2779	if ( $DEBUG_sys ) ; then
2780	echo "IGCM_sys_ncra :" $@
2781	fi
2782
2783	typeset NB_ESSAI DELAI status i
2784	# number of tentative
2785	NB_ESSAI=3
2786	# time delay between tentative
2787	DELAI=2
2788
2789	i=0
2790	while [ $i -lt $NB_ESSAI ] ; do
2791	ncra $@ > out_rsync 2>&1
2792	status=$?
2793	if [ ${status} -gt 0 ] ; then
2794	IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2795	cat out_rsync
2796	\rm out_rsync
2797	IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2798	else
2799	\rm out_rsync
2800	break
2801	fi
2802	(( i = i + 1 ))
2803	done
2804
2805	if [ ${status} -gt 0 ] ; then
2806	echo "IGCM_sys_ncra : ncra error"
2807	IGCM_debug_Exit "ncra"
2808	fi
2809
2810	IGCM_debug_PopStack "IGCM_sys_ncra"
2811	}
2812
2813	function IGCM_sys_ncrcat {
2814	IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2815	if ( $DEBUG_sys ) ; then
2816	echo "IGCM_sys_ncrcat :" $@
2817	fi
2818
2819	typeset NB_ESSAI DELAI status i
2820	# number of tentative
2821	NB_ESSAI=3
2822	# time delay between tentative
2823	DELAI=2
2824
2825	i=0
2826	while [ $i -lt $NB_ESSAI ] ; do
2827	ncrcat $@ > out_rsync 2>&1
2828	status=$?
2829	if [ ${status} -gt 0 ] ; then
2830	IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2831	cat out_rsync
2832	\rm out_rsync
2833	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2834	else
2835	\rm out_rsync
2836	break
2837	fi
2838	(( i = i + 1 ))
2839	done
2840
2841	if [ ${status} -gt 0 ] ; then
2842	echo "IGCM_sys_ncrcat : ncrcat error"
2843	#IGCM_debug_Exit "ncrcat"
2844	fi
2845
2846	IGCM_debug_PopStack "IGCM_sys_ncrcat"
2847	}
2848
2849	function IGCM_sys_ncrename {
2850	IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
2851	if ( $DEBUG_sys ) ; then
2852	echo "IGCM_sys_ncrename :" $@
2853	fi
2854
2855	typeset NB_ESSAI DELAI status i
2856	# number of tentative
2857	NB_ESSAI=3
2858	# time delay between tentative
2859	DELAI=2
2860
2861	i=0
2862	while [ $i -lt $NB_ESSAI ] ; do
2863	ncrename $@ > out_rsync 2>&1
2864	status=$?
2865	if [ ${status} -gt 0 ] ; then
2866	IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
2867	cat out_rsync
2868	\rm out_rsync
2869	IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2870	else
2871	\rm out_rsync
2872	break
2873	fi
2874	(( i = i + 1 ))
2875	done
2876
2877	if [ ${status} -gt 0 ] ; then
2878	echo "IGCM_sys_ncrename : ncrename error"
2879	IGCM_debug_Exit "ncrename"
2880	fi
2881
2882	IGCM_debug_PopStack "IGCM_sys_ncrename"
2883	}
2884
2885	function IGCM_sys_ncwa {
2886	IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
2887	if ( $DEBUG_sys ) ; then
2888	echo "IGCM_sys_ncwa :" $@
2889	fi
2890
2891	typeset NB_ESSAI DELAI status i
2892	# number of tentative
2893	NB_ESSAI=3
2894	# time delay between tentative
2895	DELAI=2
2896
2897	i=0
2898	while [ $i -lt $NB_ESSAI ] ; do
2899	ncwa $@ > out_rsync 2>&1
2900	status=$?
2901	if [ ${status} -gt 0 ] ; then
2902	IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
2903	cat out_rsync
2904	\rm out_rsync
2905	IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2906	else
2907	\rm out_rsync
2908	break
2909	fi
2910	(( i = i + 1 ))
2911	done
2912
2913	if [ ${status} -gt 0 ] ; then
2914	echo "IGCM_sys_ncwa : ncwa error"
2915	IGCM_debug_Exit "ncwa"
2916	fi
2917
2918	IGCM_debug_PopStack "IGCM_sys_ncwa"
2919	}
2920
2921	##############################################################
2922	# CDO OPERATOR
2923
2924	function IGCM_sys_cdo {
2925	IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
2926	if ( $DEBUG_sys ) ; then
2927	echo "IGCM_sys_cdo :" $@
2928	fi
2929
2930	typeset status
2931
2932	\cdo $@ > out_rsync 2>&1
2933	status=$?
2934	if [ ${status} -gt 0 ] ; then
2935	echo "IGCM_sys_cdo : error code ${status}"
2936	cat out_rsync
2937	\rm out_rsync
2938	IGCM_debug_PopStack "IGCM_sys_cdo"
2939	return 1
2940	else
2941	IGCM_debug_PopStack "IGCM_sys_cdo"
2942	return 0
2943	fi
2944
2945	IGCM_debug_PopStack "IGCM_sys_cdo"
2946	}

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