[192] | 1 | #!/bin/ksh |
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[2] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Platine |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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[217] | 65 | # $hostname ou hostname |
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[226] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[2] | 67 | # $username ou whoami |
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[226] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[71] | 69 | # $hostname of the MASTER job |
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[187] | 70 | typeset MASTER=platine |
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[2] | 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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| 77 | # rsync with path |
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[192] | 78 | typeset -r RSYNC=/usr/bin/rsync |
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[2] | 79 | # RSYNC_opt args to rsync |
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[192] | 80 | typeset -r RSYNC_opt="-va" |
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[2] | 81 | # ie storage filesystem |
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[192] | 82 | typeset -r RHOST=platine |
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[2] | 83 | |
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| 84 | #==================================================== |
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[305] | 85 | # Set environment tools (ferret, nco, cdo) |
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| 86 | #==================================================== |
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[17] | 87 | . /home/cont003/p86ipsl/.atlas_env_platine_ksh |
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| 88 | |
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| 89 | #==================================================== |
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| 90 | # Specific for ocean additionnal diagnostic |
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| 91 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 92 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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| 93 | |
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| 94 | #==================================================== |
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[2] | 95 | # Host specific DIRECTORIES |
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| 96 | #==================================================== |
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| 97 | |
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| 98 | #==================================================== |
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| 99 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 100 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 101 | |
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| 102 | #==================================================== |
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| 103 | #- SUBMIT_DIR : submission dir |
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[44] | 104 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PWD}} |
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[2] | 105 | |
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| 106 | #==================================================== |
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| 107 | #- ARCHIVE |
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| 108 | typeset -r ARCHIVE=${DMFDIR} |
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| 109 | |
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| 110 | #==================================================== |
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[71] | 111 | #- libIGCM_POST |
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| 112 | typeset -r libIGCM_POST=${libIGCM} |
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| 113 | |
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| 114 | #==================================================== |
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[2] | 115 | #- IN |
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| 116 | typeset -r R_IN=${R_IN:=/dmnfs/cont003/p86ipsl/IGCM} |
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[438] | 117 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/dmnfs/cont003/p24data} |
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[2] | 118 | |
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| 119 | #==================================================== |
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| 120 | #- OUT |
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| 121 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 122 | |
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| 123 | #==================================================== |
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[17] | 124 | #- OUT_SCR (ONLY FOR double copy an scratch) |
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| 125 | typeset -r R_OUT_SCR=${SCRATCHDIR}/IGCM_OUT |
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| 126 | |
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| 127 | #==================================================== |
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[2] | 128 | #- OUT_POST |
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| 129 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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| 130 | |
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| 131 | #==================================================== |
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| 132 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[459] | 133 | if [ ! X${LSB_QUEUE} = Xmono ] ; then |
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| 134 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}} |
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| 135 | else |
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| 136 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/tmp$$} |
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[17] | 137 | fi |
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[2] | 138 | |
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| 139 | #==================================================== |
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[156] | 140 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 141 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 142 | |
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| 143 | #==================================================== |
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[2] | 144 | #- HOST_MPIRUN_COMMAND |
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[24] | 145 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time srun"} |
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[2] | 146 | |
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[61] | 147 | #==================================================== |
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| 148 | #- Max number of arguments passed to nco operator or demigration command |
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| 149 | UNIX_MAX_LIMIT=360 |
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| 150 | |
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[192] | 151 | #D-#================================================== |
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[2] | 152 | #D-function IGCM_sys_RshMaster |
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| 153 | #D-* Purpose: Just a fake command to wrapp |
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| 154 | #D- IGCM_card call in post-treatment |
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[145] | 155 | #D- Ulam do not see brodie filesystem |
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| 156 | #D- Cesium do not see all mercure filesystem |
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[192] | 157 | #D- That's why we need this hack. |
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[2] | 158 | #D-* Examples: |
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| 159 | #D- |
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| 160 | function IGCM_sys_RshMaster { |
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| 161 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 162 | /bin/ksh <<-EOF |
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| 163 | export libIGCM=${libIGCM} |
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[98] | 164 | export DEBUG_debug=${DEBUG_debug} |
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[2] | 165 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 166 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 167 | ${@} |
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| 168 | EOF |
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| 169 | if [ $? -gt 0 ] ; then |
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| 170 | echo "IGCM_sys_RshMaster : erreur." |
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| 171 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 172 | fi |
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| 173 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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| 174 | } |
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| 175 | |
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| 176 | #D-#================================================== |
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[37] | 177 | #D-function IGCM_sys_RshArchive |
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| 178 | #D-* Purpose: Archive rsh command |
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| 179 | #D-* Examples: |
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| 180 | #D- |
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| 181 | function IGCM_sys_RshArchive { |
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| 182 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[40] | 183 | /bin/ksh <<-EOF |
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| 184 | ${@} |
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| 185 | EOF |
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[37] | 186 | if [ $? -gt 0 ] ; then |
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| 187 | echo "IGCM_sys_RshArchive : erreur." |
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| 188 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 189 | fi |
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| 190 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 191 | } |
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| 192 | |
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| 193 | #D-#================================================== |
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[2] | 194 | #D-function IGCM_sys_RshPost |
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[37] | 195 | #D-* Purpose: Post-process rsh command |
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[2] | 196 | #D-* Examples: |
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| 197 | #D- |
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| 198 | function IGCM_sys_RshPost { |
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| 199 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 200 | if ( $DEBUG_sys ) ; then |
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| 201 | echo "IGCM_sys_RshPost :" $@ |
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| 202 | fi |
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| 203 | /bin/ksh ${@} |
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| 204 | if [ $? -gt 0 ] ; then |
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| 205 | echo "IGCM_sys_RshPost : erreur." |
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| 206 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 207 | fi |
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| 208 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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| 209 | } |
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| 210 | |
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| 211 | #D-#================================================== |
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[153] | 212 | #D-function IGCM_sys_SendMail |
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| 213 | #D-* Purpose: Send mail when simulation is over |
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| 214 | #D-* Examples: |
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| 215 | #D- |
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| 216 | function IGCM_sys_SendMail { |
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| 217 | IGCM_debug_PushStack "IGCM_sys_SendMailPost" $@ |
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| 218 | if ( $DEBUG_sys ) ; then |
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[187] | 219 | echo "IGCM_sys_SendMail :" $@ |
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[153] | 220 | fi |
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[437] | 221 | |
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| 222 | if ( ${ExitFlag} ) ; then |
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[452] | 223 | status=failed |
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[437] | 224 | else |
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[452] | 225 | status=completed |
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| 226 | fi |
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[453] | 227 | cat << END_MAIL > job_end.mail |
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[437] | 228 | Dear ${LOGIN}, |
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| 229 | |
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[452] | 230 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[153] | 231 | Job started : ${DateBegin} |
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| 232 | Job ended : ${DateEnd} |
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[434] | 233 | Output files are available in ${R_SAVE} |
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[452] | 234 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[153] | 235 | END_MAIL |
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| 236 | |
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| 237 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[437] | 238 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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[153] | 239 | elif [ -f ~/.forward ] ; then |
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[437] | 240 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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[153] | 241 | fi |
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| 242 | |
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| 243 | if [ $? -gt 0 ] ; then |
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| 244 | echo "IGCM_sys_SendMail : erreur." |
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| 245 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 246 | fi |
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| 247 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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| 248 | } |
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| 249 | |
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| 250 | #D-#================================================== |
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[2] | 251 | #D-function IGCM_sys_Mkdir |
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| 252 | #D-* Purpose: Master locale mkdir command |
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| 253 | #D-* Examples: |
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| 254 | #D- |
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| 255 | function IGCM_sys_Mkdir { |
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| 256 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 257 | if ( $DEBUG_sys ) ; then |
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| 258 | echo "IGCM_sys_Mkdir :" $@ |
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| 259 | fi |
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| 260 | if [ ! -d ${1} ]; then |
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| 261 | \mkdir -p $1 |
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| 262 | if [ $? -gt 0 ] ; then |
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| 263 | echo "IGCM_sys_Mkdir : erreur." |
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| 264 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 265 | fi |
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| 266 | fi |
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| 267 | # vérification : |
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| 268 | if [ ! -d ${1} ] ; then |
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| 269 | echo "IGCM_sys_Mkdir : erreur." |
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| 270 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 271 | fi |
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| 272 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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| 273 | } |
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| 274 | |
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| 275 | #D-#================================================== |
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| 276 | #D-function IGCM_sys_MkdirArchive |
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| 277 | #D-* Purpose: Mkdir on Archive |
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| 278 | #D-* Examples: |
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| 279 | #D- |
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| 280 | function IGCM_sys_MkdirArchive { |
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| 281 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 282 | if ( $DEBUG_sys ) ; then |
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| 283 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 284 | fi |
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| 285 | #- creation de repertoire sur le serveur fichier |
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| 286 | if [ ! -d ${1} ]; then |
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| 287 | \mkdir -p $1 |
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| 288 | if [ $? -gt 0 ] ; then |
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| 289 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 290 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 291 | fi |
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| 292 | fi |
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| 293 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 294 | } |
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| 295 | |
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| 296 | #D-#================================================== |
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| 297 | #D-function IGCM_sys_MkdirWork |
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| 298 | #D-* Purpose: Mkdir on Work |
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| 299 | #D-* Examples: |
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| 300 | #D- |
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| 301 | function IGCM_sys_MkdirWork { |
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| 302 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 303 | if ( $DEBUG_sys ) ; then |
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| 304 | echo "IGCM_sys_MkdirWork :" $@ |
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| 305 | fi |
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| 306 | #- creation de repertoire sur le serveur fichier |
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| 307 | if [ ! -d ${1} ]; then |
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| 308 | \mkdir -p $1 |
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| 309 | if [ $? -gt 0 ] ; then |
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| 310 | echo "IGCM_sys_MkdirWork : erreur." |
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| 311 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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| 312 | fi |
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| 313 | fi |
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| 314 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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| 315 | } |
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| 316 | |
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| 317 | #D-#================================================== |
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| 318 | #D-function IGCM_sys_Cd |
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| 319 | #D-* Purpose: master cd command |
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| 320 | #D-* Examples: |
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| 321 | #D- |
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| 322 | function IGCM_sys_Cd { |
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| 323 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 324 | if ( $DEBUG_sys ) ; then |
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| 325 | echo "IGCM_sys_Cd :" $@ |
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| 326 | fi |
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| 327 | \cd $1 |
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| 328 | if [ $? -gt 0 ] ; then |
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| 329 | echo "IGCM_sys_Cd : erreur." |
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| 330 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 331 | fi |
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| 332 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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| 333 | } |
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| 334 | |
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| 335 | #D-#================================================== |
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| 336 | #D-function IGCM_sys_Chmod |
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| 337 | #D-* Purpose: Chmod |
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| 338 | #D-* Examples: |
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| 339 | #D- |
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| 340 | function IGCM_sys_Chmod { |
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| 341 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 342 | if ( $DEBUG_sys ) ; then |
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| 343 | echo "IGCM_sys_Chmod :" $@ |
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| 344 | fi |
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| 345 | if [ $DRYRUN -le 1 ]; then |
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| 346 | \chmod $@ |
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| 347 | if [ $? -gt 0 ] ; then |
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| 348 | echo "IGCM_sys_Chmod : erreur." |
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| 349 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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| 350 | fi |
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| 351 | else |
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[36] | 352 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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[2] | 353 | fi |
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| 354 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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| 355 | } |
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| 356 | |
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| 357 | #D-#================================================== |
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| 358 | #D-function IGCM_sys_FileSize |
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| 359 | #D-* Purpose: Filesize |
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| 360 | #D-* Examples: |
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| 361 | #D- |
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| 362 | function IGCM_sys_FileSize { |
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| 363 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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| 364 | |
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| 365 | typeset sizeF |
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| 366 | set +A sizeF -- $( ls -la ${1} ) |
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| 367 | if [ $? -gt 0 ] ; then |
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| 368 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 369 | fi |
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| 370 | eval ${2}=${sizeF[4]} |
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| 371 | |
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| 372 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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| 373 | } |
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| 374 | |
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| 375 | #D-#================================================== |
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| 376 | #D-function IGCM_sys_TestDir |
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| 377 | #D-* Purpose: Test Directory that must exists |
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| 378 | #D-* Examples: |
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| 379 | #D- |
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| 380 | function IGCM_sys_TestDir { |
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| 381 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 382 | if ( $DEBUG_sys ) ; then |
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| 383 | echo "IGCM_sys_TestDir :" $@ |
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| 384 | fi |
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[67] | 385 | typeset ExistFlag |
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| 386 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[2] | 387 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[67] | 388 | |
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| 389 | return ${ExistFlag} |
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[2] | 390 | } |
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| 391 | |
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| 392 | #D-#================================================== |
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| 393 | #D-function IGCM_sys_TestDirArchive |
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| 394 | #D-* Purpose: Test Directory that must exists on Archive |
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| 395 | #D-* Examples: |
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| 396 | #D- |
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| 397 | function IGCM_sys_TestDirArchive { |
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| 398 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 399 | if ( $DEBUG_sys ) ; then |
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| 400 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 401 | fi |
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[67] | 402 | typeset ExistFlag |
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| 403 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[2] | 404 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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[67] | 405 | |
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| 406 | return ${ExistFlag} |
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[2] | 407 | } |
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| 408 | |
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| 409 | #D-#================================================== |
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| 410 | #D-function IGCM_sys_TestFileArchive |
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| 411 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 412 | #D-* Examples: |
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| 413 | #D- |
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| 414 | function IGCM_sys_TestFileArchive { |
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| 415 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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[67] | 416 | typeset ExistFlag |
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| 417 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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| 418 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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| 419 | |
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| 420 | return ${ExistFlag} |
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| 421 | } |
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| 422 | |
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| 423 | #D-#================================================== |
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| 424 | #D-function IGCM_sys_CountFileArchive |
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| 425 | #D-* Purpose: Count files on Archive filesystem |
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| 426 | #D-* Examples: |
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| 427 | #D- |
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| 428 | function IGCM_sys_CountFileArchive { |
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| 429 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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| 430 | ls ${@} 2>/dev/null | wc -l |
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| 431 | if [ $? -gt 0 ] ; then |
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| 432 | echo "IGCM_sys_CountFileArchive : erreur." |
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[2] | 433 | fi |
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[67] | 434 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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[2] | 435 | } |
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| 436 | |
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| 437 | #D-#================================================== |
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| 438 | #D-function IGCM_sys_Tree |
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| 439 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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| 440 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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| 441 | #D- |
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| 442 | function IGCM_sys_Tree { |
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| 443 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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| 444 | if ( $DEBUG_sys ) ; then |
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| 445 | echo "IGCM_sys_Tree :" $@ |
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| 446 | fi |
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| 447 | |
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[17] | 448 | \tree -f $@ |
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[2] | 449 | |
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| 450 | IGCM_debug_PopStack "IGCM_sys_Tree" |
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| 451 | } |
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| 452 | |
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| 453 | #D-#================================================== |
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| 454 | #D-function IGCM_sys_Tar |
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| 455 | #D-* Purpose: master un-tar command |
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| 456 | #D-* Examples: |
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| 457 | #D- |
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| 458 | function IGCM_sys_Tar { |
---|
| 459 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 460 | if ( $DEBUG_sys ) ; then |
---|
| 461 | echo "IGCM_sys_Tar :" $@ |
---|
| 462 | fi |
---|
[17] | 463 | \tar cvf $@ |
---|
[2] | 464 | if [ $? -gt 0 ] ; then |
---|
| 465 | echo "IGCM_sys_Tar : erreur." |
---|
| 466 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 467 | fi |
---|
[17] | 468 | \tar tvf $1 |
---|
| 469 | |
---|
[2] | 470 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
| 471 | } |
---|
| 472 | |
---|
| 473 | #D-#================================================== |
---|
| 474 | #D-function IGCM_sys_UnTar |
---|
| 475 | #D-* Purpose: master un-tar command |
---|
| 476 | #D-* Examples: |
---|
| 477 | #D- |
---|
| 478 | function IGCM_sys_UnTar { |
---|
| 479 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 480 | if ( $DEBUG_sys ) ; then |
---|
| 481 | echo "IGCM_sys_UnTar :" $@ |
---|
| 482 | fi |
---|
| 483 | \tar xvf $1 |
---|
| 484 | if [ $? -gt 0 ] ; then |
---|
| 485 | echo "IGCM_sys_UnTar : erreur." |
---|
| 486 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 487 | fi |
---|
| 488 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
| 489 | } |
---|
| 490 | |
---|
| 491 | #D-#================================================== |
---|
| 492 | #D-function IGCM_sys_Qsub |
---|
| 493 | #D-* Purpose: Qsub new job |
---|
| 494 | #D-* Examples: |
---|
| 495 | #D- |
---|
| 496 | function IGCM_sys_Qsub { |
---|
| 497 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 498 | if ( $DEBUG_sys ) ; then |
---|
| 499 | echo "IGCM_sys_Qsub :" $@ |
---|
| 500 | fi |
---|
| 501 | bsub -o ${Script_Output} -J ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 502 | if [ $? -gt 0 ] ; then |
---|
| 503 | echo "IGCM_sys_Qsub : erreur " $@ |
---|
| 504 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 505 | fi |
---|
| 506 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
| 507 | } |
---|
| 508 | |
---|
| 509 | #D-#================================================== |
---|
| 510 | #D-function IGCM_sys_QsubPost |
---|
| 511 | #D-* Purpose: Qsub new job on scalaire |
---|
| 512 | #D-* Examples: |
---|
| 513 | #D- |
---|
| 514 | function IGCM_sys_QsubPost { |
---|
| 515 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 516 | if ( $DEBUG_sys ) ; then |
---|
| 517 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 518 | fi |
---|
[387] | 519 | bsub -o ${POST_DIR}/${Script_Post_Output}.out < ${libIGCM_POST}/$1.job |
---|
[2] | 520 | if [ $? -gt 0 ] ; then |
---|
| 521 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 522 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 523 | fi |
---|
| 524 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 525 | } |
---|
| 526 | |
---|
| 527 | #D-************************* |
---|
| 528 | #D- File transfer functions |
---|
| 529 | #D-************************* |
---|
| 530 | #D- |
---|
| 531 | |
---|
| 532 | #D-#================================================== |
---|
| 533 | #D-function IGCM_sys_Rsync_out |
---|
| 534 | #D-* Purpose: treat return val of rsync |
---|
| 535 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 536 | #D- Error values and explanations can depend on your system version. |
---|
| 537 | function IGCM_sys_Rsync_out { |
---|
| 538 | RET=$1 |
---|
| 539 | if [ ! $RET ] ; then |
---|
| 540 | echo "rsync error !" |
---|
| 541 | fi |
---|
| 542 | |
---|
| 543 | if [ $MYLANG = "fr" ]; then |
---|
| 544 | case $RET in |
---|
| 545 | 0) return ;; |
---|
| 546 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 547 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 548 | return;; |
---|
| 549 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 550 | echo "Incompatibilité de protocole." |
---|
| 551 | return;; |
---|
| 552 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 553 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 554 | echo "répertoires" |
---|
| 555 | return;; |
---|
| 556 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 557 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 558 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 559 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 560 | echo "pas par le serveur a été spécifiée." |
---|
| 561 | return;; |
---|
| 562 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 563 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 564 | return;; |
---|
| 565 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 566 | echo "Erreur d'entrée sortie fichier" |
---|
| 567 | return;; |
---|
| 568 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 569 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 570 | return;; |
---|
| 571 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 572 | echo "Erreur avec les diagnostics du programme" |
---|
| 573 | return;; |
---|
| 574 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 575 | echo "Erreur dans le code IPC" |
---|
| 576 | return;; |
---|
| 577 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 578 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 579 | return;; |
---|
| 580 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 581 | echo "Une erreur retournée par waitpid()" |
---|
| 582 | return;; |
---|
| 583 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 584 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 585 | return;; |
---|
| 586 | 23) echo "" |
---|
| 587 | echo "Erreur fichier inexistant" |
---|
| 588 | return;; |
---|
| 589 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 590 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 591 | return;; |
---|
| 592 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 593 | return;; |
---|
| 594 | esac |
---|
| 595 | elif [ $MYLANG = "en" ] ; then |
---|
| 596 | case $RET in |
---|
| 597 | 0) return;; |
---|
| 598 | 1) echo "rsync error : Syntax or usage error " |
---|
| 599 | return;; |
---|
| 600 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 601 | return;; |
---|
| 602 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 603 | return;; |
---|
| 604 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 605 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 606 | echo "them; or an option was specified that is supported by the client and" |
---|
| 607 | echo "not by the server." |
---|
| 608 | return;; |
---|
| 609 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 610 | return;; |
---|
| 611 | 10) echo "rsync error : Error in socket I/O " |
---|
| 612 | return;; |
---|
| 613 | 11) echo "rsync error : Error in file I/O " |
---|
| 614 | return;; |
---|
| 615 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 616 | return;; |
---|
| 617 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 618 | return;; |
---|
| 619 | 14) echo "rsync error : Error in IPC code " |
---|
| 620 | return;; |
---|
| 621 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 622 | return;; |
---|
| 623 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 624 | return;; |
---|
| 625 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 626 | return;; |
---|
| 627 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 628 | return;; |
---|
| 629 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 630 | return;; |
---|
| 631 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 632 | return;; |
---|
| 633 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 634 | return;; |
---|
| 635 | esac |
---|
| 636 | else |
---|
| 637 | echo "unknown language $MYLANG." |
---|
| 638 | return |
---|
| 639 | fi |
---|
| 640 | } |
---|
| 641 | |
---|
| 642 | #D-#================================================== |
---|
| 643 | #D-function IGCM_sys_Cp |
---|
| 644 | #D-* Purpose: generic cp |
---|
| 645 | #D-* Examples: |
---|
| 646 | #D- |
---|
| 647 | function IGCM_sys_Cp { |
---|
| 648 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 649 | if ( $DEBUG_sys ) ; then |
---|
| 650 | echo "IGCM_sys_Cp :" $@ |
---|
| 651 | fi |
---|
| 652 | |
---|
| 653 | typeset RET |
---|
| 654 | |
---|
| 655 | echo cp $@ > out_rsync 2>&1 |
---|
| 656 | \cp $@ >> out_rsync 2>&1 |
---|
| 657 | RET=$? |
---|
| 658 | |
---|
| 659 | if [ ${RET} -gt 0 ] ; then |
---|
| 660 | echo "IGCM_sys_Cp : error." |
---|
| 661 | cat out_rsync |
---|
| 662 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
[343] | 663 | else |
---|
[404] | 664 | \rm out_rsync |
---|
[2] | 665 | fi |
---|
| 666 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
| 667 | } |
---|
| 668 | |
---|
| 669 | #D-#================================================== |
---|
| 670 | #D-function IGCM_sys_Rm |
---|
| 671 | #D-* Purpose: generic rm |
---|
| 672 | #D-* Examples: |
---|
| 673 | #D- |
---|
| 674 | function IGCM_sys_Rm { |
---|
| 675 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 676 | if ( $DEBUG_sys ) ; then |
---|
[192] | 677 | echo "IGCM_sys_Rm :" $@ |
---|
[92] | 678 | fi |
---|
| 679 | |
---|
| 680 | typeset RET |
---|
| 681 | |
---|
| 682 | echo rm $@ > out_rsync 2>&1 |
---|
| 683 | \rm $@ >> out_rsync 2>&1 |
---|
| 684 | RET=$? |
---|
| 685 | |
---|
| 686 | if [ ${RET} -gt 0 ] ; then |
---|
[2] | 687 | echo "IGCM_sys_Rm : error." |
---|
| 688 | cat out_rsync |
---|
| 689 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
[343] | 690 | else |
---|
[404] | 691 | \rm out_rsync |
---|
[2] | 692 | fi |
---|
| 693 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
| 694 | } |
---|
| 695 | |
---|
| 696 | #D-#================================================== |
---|
[203] | 697 | #D-function IGCM_sys_RmRunDir |
---|
| 698 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 699 | #D- scheduler will do the job) |
---|
| 700 | #D-* Examples: |
---|
| 701 | #D- |
---|
| 702 | function IGCM_sys_RmRunDir { |
---|
| 703 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 704 | if ( $DEBUG_sys ) ; then |
---|
| 705 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 706 | echo "Dummy call, let the scheduler do that." |
---|
| 707 | fi |
---|
| 708 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
| 709 | } |
---|
| 710 | |
---|
| 711 | #D-#================================================== |
---|
[2] | 712 | #D-function IGCM_sys_Mv |
---|
| 713 | #D-* Purpose: generic move |
---|
| 714 | #D-* Examples: |
---|
| 715 | #D- |
---|
| 716 | function IGCM_sys_Mv { |
---|
| 717 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 718 | if ( $DEBUG_sys ) ; then |
---|
| 719 | echo "IGCM_sys_Mv :" $@ |
---|
| 720 | fi |
---|
| 721 | |
---|
[173] | 722 | if [ $DRYRUN = 0 ]; then |
---|
[2] | 723 | |
---|
[173] | 724 | typeset RET |
---|
| 725 | |
---|
| 726 | echo mv $@ > out_rsync 2>&1 |
---|
| 727 | \mv $@ >> out_rsync 2>&1 |
---|
| 728 | RET=$? |
---|
| 729 | |
---|
| 730 | if [ ${RET} -gt 0 ] ; then |
---|
| 731 | echo "IGCM_sys_Mv : error in mv." |
---|
| 732 | cat out_rsync |
---|
| 733 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[343] | 734 | else |
---|
[404] | 735 | \rm out_rsync |
---|
[173] | 736 | fi |
---|
| 737 | else |
---|
| 738 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 739 | fi |
---|
| 740 | |
---|
| 741 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
| 742 | } |
---|
| 743 | |
---|
| 744 | #D-#================================================== |
---|
[17] | 745 | #D-function IGCM_sys_Put_Dir |
---|
| 746 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 747 | #D-* Examples: |
---|
| 748 | #D- |
---|
| 749 | function IGCM_sys_Put_Dir { |
---|
| 750 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 751 | if ( $DEBUG_sys ) ; then |
---|
| 752 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 753 | fi |
---|
| 754 | if [ $DRYRUN = 0 ]; then |
---|
| 755 | if [ ! -d ${1} ] ; then |
---|
| 756 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 757 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 758 | return |
---|
| 759 | fi |
---|
[2] | 760 | |
---|
[17] | 761 | typeset RET |
---|
| 762 | |
---|
| 763 | # Only if we use rsync |
---|
| 764 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 765 | # |
---|
| 766 | #USUAL WAY |
---|
| 767 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 768 | RET=$? |
---|
| 769 | |
---|
| 770 | if [ ${RET} -gt 0 ] ; then |
---|
| 771 | echo "IGCM_sys_Put_Dir : error." |
---|
| 772 | cat out_rsync |
---|
| 773 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[343] | 774 | else |
---|
[404] | 775 | \rm out_rsync |
---|
[17] | 776 | fi |
---|
| 777 | else |
---|
[36] | 778 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[17] | 779 | fi |
---|
| 780 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 781 | } |
---|
| 782 | |
---|
[2] | 783 | #D-#================================================== |
---|
[17] | 784 | #D-function IGCM_sys_Get_Dir |
---|
| 785 | #D-* Purpose: Copy a complete directory from $(ARCHIVE) |
---|
| 786 | #D-* Examples: |
---|
| 787 | #D- |
---|
| 788 | function IGCM_sys_Get_Dir { |
---|
| 789 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 790 | if ( $DEBUG_sys ) ; then |
---|
| 791 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 792 | fi |
---|
| 793 | if [ $DRYRUN = 0 ]; then |
---|
[192] | 794 | # if [ ! -d ${1} ] ; then |
---|
| 795 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 796 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 797 | # return |
---|
| 798 | # fi |
---|
[17] | 799 | |
---|
| 800 | typeset RET |
---|
| 801 | |
---|
| 802 | # Only if we use rsync |
---|
| 803 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 804 | # |
---|
| 805 | #USUAL WAY |
---|
| 806 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 807 | RET=$? |
---|
| 808 | |
---|
| 809 | if [ ${RET} -gt 0 ] ; then |
---|
| 810 | echo "IGCM_sys_Get_Dir : error." |
---|
| 811 | cat out_rsync |
---|
| 812 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[343] | 813 | else |
---|
[404] | 814 | \rm out_rsync |
---|
[17] | 815 | fi |
---|
| 816 | else |
---|
[36] | 817 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[17] | 818 | fi |
---|
| 819 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 820 | } |
---|
| 821 | |
---|
| 822 | #D-#================================================== |
---|
| 823 | #D-function IGCM_sys_Get_Master |
---|
| 824 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 825 | #D-* Examples: |
---|
| 826 | #D- |
---|
| 827 | function IGCM_sys_Get_Master { |
---|
| 828 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 829 | if ( $DEBUG_sys ) ; then |
---|
| 830 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 831 | fi |
---|
| 832 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 833 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[17] | 834 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 835 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 836 | return |
---|
| 837 | fi |
---|
| 838 | |
---|
| 839 | typeset RET |
---|
| 840 | |
---|
| 841 | #USUAL WAY |
---|
| 842 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 843 | RET=$? |
---|
| 844 | |
---|
| 845 | if [ ${RET} -gt 0 ] ; then |
---|
| 846 | echo "IGCM_sys_Get_Master : error." |
---|
| 847 | cat out_rsync |
---|
| 848 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
| 849 | fi |
---|
| 850 | else |
---|
[36] | 851 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[17] | 852 | fi |
---|
| 853 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 854 | } |
---|
| 855 | |
---|
| 856 | #D-#================================================== |
---|
[192] | 857 | #D-function IGCM_sys_Put_Rest |
---|
| 858 | #D-* Purpose: Put computied restarts on $(ARCHIVE). |
---|
| 859 | #D- File and target directory must exist. |
---|
| 860 | #D-* Examples: |
---|
| 861 | #D- |
---|
| 862 | function IGCM_sys_Put_Rest { |
---|
| 863 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 864 | if ( $DEBUG_sys ) ; then |
---|
| 865 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 866 | fi |
---|
| 867 | if [ $DRYRUN = 0 ]; then |
---|
| 868 | if [ ! -f ${1} ] ; then |
---|
| 869 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 870 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 871 | fi |
---|
| 872 | |
---|
| 873 | typeset RET |
---|
| 874 | # |
---|
| 875 | if [ X${JobType} = XRUN ] ; then |
---|
| 876 | IGCM_sys_Chmod 444 ${1} |
---|
| 877 | fi |
---|
| 878 | # |
---|
| 879 | IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 880 | # |
---|
| 881 | # USUAL WAY |
---|
| 882 | putfer $1 $2 > out_rsync 2>&1 |
---|
| 883 | RET=$? |
---|
| 884 | |
---|
| 885 | # #RSYNC WITH NETWORK RSH CALL |
---|
| 886 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 887 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
| 888 | |
---|
| 889 | # #RSYNC WITH NFS USE |
---|
| 890 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 891 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
| 892 | |
---|
| 893 | # RET=$? |
---|
| 894 | # IGCM_sys_Rsync_out $RET |
---|
| 895 | |
---|
| 896 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 897 | # (( RET=RET+$? )) |
---|
| 898 | |
---|
| 899 | if [ ${RET} -gt 0 ] ; then |
---|
| 900 | echo "IGCM_sys_Put_Rest : error." |
---|
| 901 | cat out_rsync |
---|
| 902 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[343] | 903 | else |
---|
[404] | 904 | \rm out_rsync |
---|
[192] | 905 | fi |
---|
| 906 | else |
---|
| 907 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 908 | fi |
---|
| 909 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 910 | } |
---|
| 911 | |
---|
| 912 | #D-#================================================== |
---|
[2] | 913 | #D-function IGCM_sys_Put_Out |
---|
| 914 | #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly |
---|
| 915 | #D-* Examples: |
---|
| 916 | #D- |
---|
| 917 | function IGCM_sys_Put_Out { |
---|
| 918 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 919 | if ( $DEBUG_sys ) ; then |
---|
| 920 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 921 | fi |
---|
| 922 | if [ $DRYRUN = 0 ]; then |
---|
| 923 | if [ ! -f ${1} ] ; then |
---|
| 924 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 925 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 926 | return 1 |
---|
| 927 | fi |
---|
| 928 | # |
---|
| 929 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 930 | # |
---|
| 931 | typeset RET |
---|
[17] | 932 | # |
---|
[128] | 933 | if [ X${JobType} = XRUN ] ; then |
---|
[226] | 934 | if [ X${3} = X ] ; then |
---|
| 935 | IGCM_sys_Chmod 444 ${1} |
---|
| 936 | fi |
---|
[128] | 937 | fi |
---|
[2] | 938 | # |
---|
| 939 | # USUAL WAY |
---|
| 940 | putfer $1 $2 > out_rsync 2>&1 |
---|
| 941 | RET=$? |
---|
| 942 | |
---|
| 943 | # #RSYNC WITH NETWORK RSH CALL |
---|
[192] | 944 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 945 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
[2] | 946 | |
---|
| 947 | # #RSYNC WITH NFS USE |
---|
[192] | 948 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 949 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[2] | 950 | |
---|
| 951 | # RET=$? |
---|
| 952 | # IGCM_sys_Rsync_out $RET |
---|
| 953 | |
---|
| 954 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 955 | # (( RET=RET+$? )) |
---|
| 956 | |
---|
| 957 | if [ ${RET} -gt 0 ] ; then |
---|
| 958 | echo "IGCM_sys_Put_Out : error." |
---|
| 959 | cat out_rsync |
---|
| 960 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[343] | 961 | else |
---|
[404] | 962 | \rm out_rsync |
---|
[2] | 963 | fi |
---|
| 964 | else |
---|
[36] | 965 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 966 | fi |
---|
| 967 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 968 | return 0 |
---|
| 969 | } |
---|
| 970 | |
---|
| 971 | #D-#================================================== |
---|
| 972 | #D-function IGCM_sys_Get |
---|
| 973 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 974 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 975 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 976 | function IGCM_sys_Get { |
---|
| 977 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 978 | |
---|
| 979 | typeset DEST RET dm_liste ifile target file_work |
---|
| 980 | |
---|
| 981 | if ( $DEBUG_sys ) ; then |
---|
| 982 | echo "IGCM_sys_Get :" $@ |
---|
| 983 | fi |
---|
| 984 | if [ $DRYRUN -le 2 ]; then |
---|
| 985 | if [ X${1} = X'/l' ] ; then |
---|
| 986 | # test if the first file is present in the old computation : |
---|
| 987 | eval set +A dm_liste \${${2}} |
---|
| 988 | else |
---|
| 989 | eval set +A dm_liste ${1} |
---|
| 990 | fi |
---|
| 991 | eval DEST=\${${#}} |
---|
| 992 | |
---|
| 993 | #===================================================== |
---|
| 994 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 995 | #===================================================== |
---|
| 996 | |
---|
| 997 | # Is it an R_OUT file (not R_IN) ? |
---|
| 998 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 999 | #if [ $? -eq 0 ] ; then |
---|
| 1000 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
[17] | 1001 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_OUT_SCR}|g" ) |
---|
[2] | 1002 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1003 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1004 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1005 | # return |
---|
| 1006 | # fi |
---|
| 1007 | #fi |
---|
| 1008 | |
---|
| 1009 | # test if the (first) file is present in the old computation : |
---|
| 1010 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 1011 | RET=$? |
---|
| 1012 | if [ ${RET} -gt 0 ] ; then |
---|
| 1013 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1014 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[145] | 1015 | #IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1016 | #return |
---|
[2] | 1017 | fi |
---|
| 1018 | |
---|
[222] | 1019 | # dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1020 | # RET=$? |
---|
| 1021 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1022 | # echo "IGCM_sys_Get : demigration error." |
---|
| 1023 | # cat out_rsync |
---|
| 1024 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1025 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1026 | # return |
---|
| 1027 | # fi |
---|
[2] | 1028 | |
---|
| 1029 | #USUAL WAY |
---|
[17] | 1030 | (( RET=0 )) |
---|
[2] | 1031 | if [ X${1} = X'/l' ] ; then |
---|
| 1032 | (( RET=0 )) |
---|
| 1033 | for target in ${dm_liste[*]} ; do |
---|
| 1034 | local_file=$( basename ${target} ) |
---|
| 1035 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1036 | (( RET = RET + $? )) |
---|
| 1037 | done |
---|
| 1038 | else |
---|
| 1039 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1040 | RET=$? |
---|
| 1041 | fi |
---|
| 1042 | |
---|
| 1043 | # #RSYNC WITH NETWORK RSH CALL |
---|
[192] | 1044 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1045 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[2] | 1046 | |
---|
| 1047 | # #RSYNC WITH NFS USE |
---|
[192] | 1048 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1049 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[2] | 1050 | |
---|
| 1051 | # RET=$? |
---|
| 1052 | # IGCM_sys_Rsync_out $RET |
---|
| 1053 | |
---|
| 1054 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1055 | # (( RET=RET+$? )) |
---|
| 1056 | |
---|
| 1057 | if [ ${RET} -gt 0 ] ; then |
---|
| 1058 | echo "IGCM_sys_Get : copy error." |
---|
| 1059 | cat out_rsync |
---|
| 1060 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[343] | 1061 | else |
---|
[404] | 1062 | \rm out_rsync |
---|
[2] | 1063 | fi |
---|
| 1064 | else |
---|
[36] | 1065 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 1066 | fi |
---|
| 1067 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1068 | } |
---|
| 1069 | |
---|
| 1070 | #D-#================================================== |
---|
[343] | 1071 | #D-function IGCM_sys_Dods_Rm |
---|
| 1072 | #D-* Purpose: DO NOTHING ! Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1073 | #D-* Examples: |
---|
| 1074 | #D- |
---|
| 1075 | function IGCM_sys_Dods_Rm { |
---|
| 1076 | if ( $DEBUG_sys ) ; then |
---|
| 1077 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1078 | fi |
---|
| 1079 | typeset RET |
---|
| 1080 | RET=0 |
---|
| 1081 | if [ $DRYRUN = 0 ]; then |
---|
| 1082 | if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1083 | echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1084 | echo "Nothing has been done." |
---|
| 1085 | return |
---|
| 1086 | fi |
---|
[418] | 1087 | dods_rm public/${LOGIN}/${R_DODS}/${1} #> out_dods_rm 2>&1 |
---|
[343] | 1088 | RET=$? |
---|
| 1089 | |
---|
[418] | 1090 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1091 | # echo "IGCM_sys_Put_Dods : error." |
---|
| 1092 | # cat out_dods_rm |
---|
| 1093 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
| 1094 | # else |
---|
| 1095 | # rm out_dods_rm |
---|
| 1096 | # fi |
---|
| 1097 | |
---|
[343] | 1098 | else |
---|
| 1099 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1100 | fi |
---|
| 1101 | return $RET |
---|
| 1102 | } |
---|
| 1103 | |
---|
| 1104 | |
---|
| 1105 | #D-#================================================== |
---|
| 1106 | #D-function IGCM_sys_Dods_Cp |
---|
| 1107 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1108 | #D-* Examples: |
---|
| 1109 | #D- |
---|
| 1110 | function IGCM_sys_Dods_Cp { |
---|
| 1111 | if ( $DEBUG_sys ) ; then |
---|
| 1112 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1113 | fi |
---|
| 1114 | typeset RET |
---|
| 1115 | RET=0 |
---|
| 1116 | if [ $DRYRUN = 0 ]; then |
---|
| 1117 | if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1118 | echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1119 | echo "Nothing has been done." |
---|
| 1120 | return |
---|
| 1121 | fi |
---|
| 1122 | # |
---|
[418] | 1123 | dods_cp ${1} public/${LOGIN}/${R_DODS} #> out_dods_cp 2>&1 |
---|
[343] | 1124 | RET=$? |
---|
| 1125 | |
---|
[418] | 1126 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1127 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1128 | # cat out_dods_cp |
---|
| 1129 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1130 | # else |
---|
| 1131 | # rm out_dods_cp |
---|
| 1132 | # fi |
---|
| 1133 | |
---|
[343] | 1134 | else |
---|
| 1135 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1136 | fi |
---|
| 1137 | return $RET |
---|
| 1138 | } |
---|
| 1139 | |
---|
| 1140 | #D-#================================================== |
---|
[2] | 1141 | #D-function IGCM_sys_Put_Dods |
---|
| 1142 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1143 | #D-* Examples: |
---|
| 1144 | #D- |
---|
| 1145 | function IGCM_sys_Put_Dods { |
---|
| 1146 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1147 | if ( $DEBUG_sys ) ; then |
---|
| 1148 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1149 | fi |
---|
| 1150 | if [ $DRYRUN = 0 ]; then |
---|
[17] | 1151 | if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1152 | echo "WARNING : IGCM_sys_Put_Dods ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
[2] | 1153 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1154 | return |
---|
| 1155 | fi |
---|
| 1156 | |
---|
| 1157 | typeset RET |
---|
| 1158 | # |
---|
[17] | 1159 | cd ${R_SAVE} |
---|
[343] | 1160 | IGCM_sys_Dods_Rm ${1} |
---|
| 1161 | IGCM_sys_Dods_Cp ${1} |
---|
[17] | 1162 | RET=0 |
---|
[2] | 1163 | |
---|
| 1164 | if [ ${RET} -gt 0 ] ; then |
---|
| 1165 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1166 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1167 | fi |
---|
| 1168 | else |
---|
[36] | 1169 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 1170 | fi |
---|
| 1171 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1172 | } |
---|
| 1173 | |
---|
| 1174 | ############################################################## A FINIR !! |
---|
| 1175 | |
---|
| 1176 | #D-#================================================== |
---|
| 1177 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1178 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1179 | #D-* Examples: |
---|
| 1180 | #D- |
---|
| 1181 | function IGCM_sys_GetDate_FichWork { |
---|
| 1182 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1183 | if ( $DEBUG_sys ) ; then |
---|
| 1184 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1185 | fi |
---|
| 1186 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1187 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1188 | } |
---|
| 1189 | |
---|
| 1190 | #D-#================================================== |
---|
| 1191 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[17] | 1192 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[2] | 1193 | #D-* Examples: |
---|
| 1194 | #D- |
---|
| 1195 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1196 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1197 | if ( $DEBUG_sys ) ; then |
---|
| 1198 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1199 | fi |
---|
| 1200 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1201 | } |
---|
| 1202 | |
---|
| 1203 | ############################################################## |
---|
[343] | 1204 | # REBUILD OPERATOR |
---|
| 1205 | |
---|
| 1206 | function IGCM_sys_rebuild { |
---|
| 1207 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1208 | if ( $DEBUG_sys ) ; then |
---|
| 1209 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1210 | fi |
---|
| 1211 | /home/cont003/p86ipsl/IA64/bin/rebuild -f -o $@ |
---|
| 1212 | if [ $? -gt 0 ] ; then |
---|
| 1213 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1214 | IGCM_debug_Exit "rebuild" |
---|
| 1215 | fi |
---|
| 1216 | |
---|
| 1217 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
| 1218 | } |
---|
| 1219 | |
---|
| 1220 | ############################################################## |
---|
[2] | 1221 | # NCO OPERATOR |
---|
| 1222 | |
---|
[377] | 1223 | function IGCM_sys_ncap2 { |
---|
| 1224 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
[2] | 1225 | if ( $DEBUG_sys ) ; then |
---|
[377] | 1226 | echo "IGCM_sys_ncap2 :" $@ |
---|
[2] | 1227 | fi |
---|
[377] | 1228 | /applications/nco/bin/ncap2 "$@" |
---|
[2] | 1229 | if [ $? -gt 0 ] ; then |
---|
[377] | 1230 | echo "IGCM_sys_ncap2 : erreur ${@}." |
---|
[409] | 1231 | IGCM_debug_Exit "ncap2" |
---|
[2] | 1232 | fi |
---|
| 1233 | |
---|
[377] | 1234 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
[2] | 1235 | } |
---|
| 1236 | |
---|
[375] | 1237 | function IGCM_sys_ncatted { |
---|
| 1238 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1239 | if ( $DEBUG_sys ) ; then |
---|
| 1240 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1241 | fi |
---|
| 1242 | /usr/local/bin/ncatted "$@" |
---|
| 1243 | if [ $? -gt 0 ] ; then |
---|
| 1244 | echo "IGCM_sys_ncatted : erreur ${@}." |
---|
[409] | 1245 | IGCM_debug_Exit "ncatted" |
---|
[375] | 1246 | fi |
---|
[2] | 1247 | |
---|
[375] | 1248 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
| 1249 | } |
---|
[2] | 1250 | |
---|
| 1251 | function IGCM_sys_ncbo { |
---|
| 1252 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1253 | if ( $DEBUG_sys ) ; then |
---|
| 1254 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1255 | fi |
---|
| 1256 | /applications/nco/bin/ncbo $@ |
---|
| 1257 | if [ $? -gt 0 ] ; then |
---|
| 1258 | echo "IGCM_sys_ncbo : erreur ${@}." |
---|
[409] | 1259 | IGCM_debug_Exit "ncbo" |
---|
[2] | 1260 | fi |
---|
| 1261 | |
---|
| 1262 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
| 1263 | } |
---|
| 1264 | |
---|
| 1265 | function IGCM_sys_ncdiff { |
---|
| 1266 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1267 | if ( $DEBUG_sys ) ; then |
---|
| 1268 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1269 | fi |
---|
| 1270 | /applications/nco/bin/ncdiff $@ |
---|
| 1271 | if [ $? -gt 0 ] ; then |
---|
| 1272 | echo "IGCM_sys_ncdiff : erreur ${@}." |
---|
[409] | 1273 | IGCM_debug_Exit "ncdiff" |
---|
[2] | 1274 | fi |
---|
| 1275 | |
---|
| 1276 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
| 1277 | } |
---|
| 1278 | |
---|
| 1279 | function IGCM_sys_ncea { |
---|
| 1280 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 1281 | if ( $DEBUG_sys ) ; then |
---|
| 1282 | echo "IGCM_sys_ncea :" $@ |
---|
| 1283 | fi |
---|
| 1284 | /applications/nco/bin/ncea $@ |
---|
| 1285 | if [ $? -gt 0 ] ; then |
---|
| 1286 | echo "IGCM_sys_ncea : erreur ${@}." |
---|
[409] | 1287 | IGCM_debug_Exit "ncea" |
---|
[2] | 1288 | fi |
---|
| 1289 | |
---|
| 1290 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
| 1291 | } |
---|
| 1292 | |
---|
| 1293 | function IGCM_sys_ncecat { |
---|
| 1294 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 1295 | if ( $DEBUG_sys ) ; then |
---|
| 1296 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1297 | fi |
---|
| 1298 | /applications/nco/bin/ncecat $@ |
---|
| 1299 | if [ $? -gt 0 ] ; then |
---|
| 1300 | echo "IGCM_sys_ncecat : erreur ${@}." |
---|
[409] | 1301 | IGCM_debug_Exit "ncecat" |
---|
[2] | 1302 | fi |
---|
| 1303 | |
---|
| 1304 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
| 1305 | } |
---|
| 1306 | |
---|
| 1307 | function IGCM_sys_ncflint { |
---|
| 1308 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 1309 | if ( $DEBUG_sys ) ; then |
---|
| 1310 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1311 | fi |
---|
| 1312 | /usr/local/bin/ncflint $@ |
---|
| 1313 | if [ $? -gt 0 ] ; then |
---|
| 1314 | echo "IGCM_sys_ncflint : erreur ${@}." |
---|
[409] | 1315 | IGCM_debug_Exit "ncflint" |
---|
[2] | 1316 | fi |
---|
| 1317 | |
---|
| 1318 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
| 1319 | } |
---|
| 1320 | |
---|
| 1321 | function IGCM_sys_ncks { |
---|
| 1322 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 1323 | if ( $DEBUG_sys ) ; then |
---|
| 1324 | echo "IGCM_sys_ncks :" $@ |
---|
| 1325 | fi |
---|
| 1326 | /applications/nco/bin/ncks $@ |
---|
| 1327 | if [ $? -gt 0 ] ; then |
---|
| 1328 | echo "IGCM_sys_ncks : erreur ${@}." |
---|
[409] | 1329 | IGCM_debug_Exit "ncks" |
---|
[2] | 1330 | fi |
---|
| 1331 | |
---|
| 1332 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
| 1333 | } |
---|
| 1334 | |
---|
| 1335 | function IGCM_sys_ncpdq { |
---|
| 1336 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 1337 | if ( $DEBUG_sys ) ; then |
---|
| 1338 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 1339 | fi |
---|
| 1340 | /applications/nco/bin/ncpdq $@ |
---|
| 1341 | if [ $? -gt 0 ] ; then |
---|
| 1342 | echo "IGCM_sys_ncpdq : erreur ${@}." |
---|
[409] | 1343 | IGCM_debug_Exit "ncpdq" |
---|
[2] | 1344 | fi |
---|
| 1345 | |
---|
| 1346 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
| 1347 | } |
---|
| 1348 | |
---|
| 1349 | function IGCM_sys_ncra { |
---|
| 1350 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 1351 | if ( $DEBUG_sys ) ; then |
---|
| 1352 | echo "IGCM_sys_ncra :" $@ |
---|
| 1353 | fi |
---|
[17] | 1354 | /applications/nco/bin/ncra $@ |
---|
[2] | 1355 | if [ $? -gt 0 ] ; then |
---|
| 1356 | echo "IGCM_sys_ncra : erreur ${@}." |
---|
[409] | 1357 | IGCM_debug_Exit "ncra" |
---|
[2] | 1358 | fi |
---|
| 1359 | |
---|
| 1360 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
| 1361 | } |
---|
| 1362 | |
---|
| 1363 | function IGCM_sys_ncrcat { |
---|
| 1364 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 1365 | if ( $DEBUG_sys ) ; then |
---|
| 1366 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 1367 | fi |
---|
| 1368 | /applications/nco/bin/ncrcat $@ |
---|
| 1369 | if [ $? -gt 0 ] ; then |
---|
| 1370 | echo "IGCM_sys_ncrcat : erreur ${@}." |
---|
| 1371 | # IGCM_debug_Exit "ncrcat" |
---|
| 1372 | fi |
---|
| 1373 | |
---|
| 1374 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
| 1375 | } |
---|
| 1376 | |
---|
| 1377 | function IGCM_sys_ncrename { |
---|
| 1378 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 1379 | if ( $DEBUG_sys ) ; then |
---|
| 1380 | echo "IGCM_sys_ncrename :" $@ |
---|
| 1381 | fi |
---|
| 1382 | /applications/nco/bin/ncrename $@ |
---|
| 1383 | if [ $? -gt 0 ] ; then |
---|
| 1384 | echo "IGCM_sys_ncrename : erreur ${@}." |
---|
[409] | 1385 | IGCM_debug_Exit "ncrename" |
---|
[2] | 1386 | fi |
---|
| 1387 | |
---|
| 1388 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
| 1389 | } |
---|
| 1390 | |
---|
| 1391 | function IGCM_sys_ncwa { |
---|
| 1392 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 1393 | if ( $DEBUG_sys ) ; then |
---|
| 1394 | echo "IGCM_sys_ncwa :" $@ |
---|
| 1395 | fi |
---|
| 1396 | /applications/nco/bin/ncwa $@ |
---|
| 1397 | if [ $? -gt 0 ] ; then |
---|
| 1398 | echo "IGCM_sys_ncwa : erreur ${@}." |
---|
[409] | 1399 | IGCM_debug_Exit "ncwa" |
---|
[2] | 1400 | fi |
---|
| 1401 | |
---|
| 1402 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
| 1403 | } |
---|
| 1404 | |
---|
| 1405 | ############################################################## |
---|
[343] | 1406 | # CDO OPERATOR |
---|
[2] | 1407 | |
---|
[343] | 1408 | function IGCM_sys_cdo { |
---|
| 1409 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 1410 | |
---|
| 1411 | \cdo $@ |
---|
[2] | 1412 | if [ $? -gt 0 ] ; then |
---|
[409] | 1413 | echo "IGCM_sys_cdo : erreur ${@}." |
---|
| 1414 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1415 | return 1 |
---|
| 1416 | else |
---|
| 1417 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1418 | return 0 |
---|
[2] | 1419 | fi |
---|
| 1420 | |
---|
[343] | 1421 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[2] | 1422 | } |
---|
| 1423 | |
---|
| 1424 | ############################################################ |
---|
| 1425 | # Activate Running Environnment Variables |
---|
| 1426 | |
---|
| 1427 | function IGCM_sys_activ_variables { |
---|
| 1428 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1429 | if ( $DEBUG_sys ) ; then |
---|
| 1430 | echo "IGCM_sys_activ_variables" |
---|
| 1431 | fi |
---|
| 1432 | ulimit -s 2097152 |
---|
| 1433 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 1434 | } |
---|
| 1435 | |
---|
| 1436 | ############################################################ |
---|
| 1437 | # Desactivate Running Environnment Variables |
---|
| 1438 | |
---|
| 1439 | function IGCM_sys_desactiv_variables { |
---|
| 1440 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1441 | if ( $DEBUG_sys ) ; then |
---|
| 1442 | echo "IGCM_sys_desactiv_variables" |
---|
| 1443 | fi |
---|
| 1444 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1445 | } |
---|
| 1446 | |
---|
| 1447 | ############################################################ |
---|
| 1448 | # Build run file |
---|
| 1449 | |
---|
| 1450 | function IGCM_sys_build_run_file { |
---|
| 1451 | IGCM_debug_PushStack "IGCM_sys_build_run_file" $@ |
---|
| 1452 | if ( $DEBUG_sys ) ; then |
---|
| 1453 | echo "IGCM_sys_build_run_file " $@ |
---|
| 1454 | fi |
---|
[190] | 1455 | NUM_PROC_OCE=1 |
---|
| 1456 | (( NUM_PROC_ATM = $BATCH_NUM_PROC_TOT - NUM_PROC_OCE - 1)) |
---|
| 1457 | (( nb_tot_m1 = $BATCH_NUM_PROC_TOT - NUM_PROC_OCE )) |
---|
[2] | 1458 | if [ $1 = MPI1 ]; then |
---|
| 1459 | cat <<EOF > run_file |
---|
| 1460 | #!/bin/bash |
---|
| 1461 | if [ \$SLURM_PROCID -eq 0 ] |
---|
| 1462 | then ./oasis ; |
---|
| 1463 | elif ( [ \$SLURM_PROCID -ge 1 ] && [ \$SLURM_PROCID -lt ${nb_tot_m1} ] ) |
---|
| 1464 | then ./lmdz.x ; |
---|
| 1465 | else ./opa.xx ; |
---|
| 1466 | fi |
---|
| 1467 | EOF |
---|
| 1468 | config_UserChoices_JobRunOptions='"-n ${BATCH_NUM_PROC_TOT}"' |
---|
| 1469 | IGCM_sys_Chmod u+x run_file |
---|
| 1470 | fi |
---|
| 1471 | IGCM_debug_PopStack "IGCM_sys_build_run_file" |
---|
| 1472 | |
---|
| 1473 | } |
---|
[651] | 1474 | |
---|
| 1475 | ############################################################ |
---|
| 1476 | # Check of space available on temporary filesytems |
---|
| 1477 | function IGCM_sys_check_quota { |
---|
| 1478 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1479 | if ( $DEBUG_sys ) ; then |
---|
| 1480 | echo "IGCM_sys_check_quota" |
---|
| 1481 | fi |
---|
| 1482 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1483 | } |
---|