1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Sebastien Denvil, Martial Mancip |
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5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | |
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14 | #========================================================= |
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15 | # The documentation of this file can be automatically generated |
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16 | # if you use the prefix #D- for comments to be extracted. |
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17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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18 | #========================================================= |
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19 | |
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20 | #D-#================================================== |
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21 | #D-LibIGCM_sys for Mercure SX9 |
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22 | #D-#================================================== |
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23 | #D- |
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24 | #D- This ksh library if a layer under some usefull |
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25 | #D-environment variables and shell commands. |
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26 | #D-All those definitions depend on host particularities. |
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27 | #D-It manages a stack mechanism and test validity of operations. |
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28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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29 | |
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30 | #==================================================== |
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31 | # libIGCM_sys PARAMETERS |
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32 | #==================================================== |
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33 | |
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34 | # gawk specific location on SX9 |
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35 | export PATH=/applications/gawk-3.0.4/bin:${PATH} |
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36 | |
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37 | #==================================================== |
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38 | # set DEBUG_sys to true to output calls of function |
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39 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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40 | |
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41 | #==================================================== |
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42 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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43 | typeset -r DRYRUN=${DRYRUN:=0} |
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44 | |
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45 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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46 | # ------------------------------------------------------------------------------------- |
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47 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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48 | # | | Cp/Exe param files | | Chmod | | |
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49 | # | | Qsub | | | | |
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50 | # ------------------------------------------------------------------------------------- |
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51 | # | 0 | yes | yes | yes | yes | |
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52 | # ------------------------------------------------------------------------------------- |
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53 | # | 1 | yes | yes | yes | no | |
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54 | # ------------------------------------------------------------------------------------- |
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55 | # | 2 | yes | yes | no | no | |
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56 | # ------------------------------------------------------------------------------------- |
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57 | # | 3 | yes | no | no | no | |
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58 | # ------------------------------------------------------------------------------------- |
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59 | |
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60 | #===================================================== |
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61 | # Global Variables : |
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62 | #===================================================== |
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63 | # Language : "fr" or "en" |
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64 | typeset -r MYLANG="fr" |
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65 | |
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66 | #===================================================== |
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67 | # Host and user names |
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68 | # $hostname ou hostname |
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69 | typeset HOST=${HOST:=$( hostname )} |
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70 | # $username ou whoami |
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71 | typeset LOGIN=${LOGIN:=$( whoami )} |
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72 | # $hostname of the MASTER job |
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73 | typeset -r MASTER=mercure |
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74 | |
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75 | #D- |
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76 | #D-#================================================== |
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77 | #D-Program used in libIGCM |
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78 | #D-#================================================== |
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79 | |
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80 | # rsync with path |
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81 | typeset -r RSYNC=/home/cont003/p86denv/SX_RSYNC/bin/rsync |
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82 | # RSYNC_opt args to rsync |
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83 | typeset -r RSYNC_opt="-va" |
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84 | # ie storage filesystem |
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85 | typeset -r STOREHOST=${MASTER} |
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86 | |
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87 | #==================================================== |
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88 | # Host specific DIRECTORIES |
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89 | #==================================================== |
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90 | |
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91 | # ============ CESIUM START ============ # |
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92 | |
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93 | #==================================================== |
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94 | #- Mirror libIGCM from mercure to cesium if needed |
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95 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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96 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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97 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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98 | #else |
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99 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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100 | #fi |
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101 | |
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102 | #==================================================== |
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103 | #- libIGCM_POST |
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104 | #if ( ${MirrorlibIGCM} ) ; then |
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105 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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106 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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107 | #else |
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108 | # typeset -r libIGCM_POST=${libIGCM} |
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109 | #fi |
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110 | |
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111 | # ============ CESIUM END ============ # |
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112 | |
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113 | #==================================================== |
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114 | #- MirrorlibIGCM uncomment for frontend |
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115 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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116 | |
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117 | #==================================================== |
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118 | #- libIGCM_POST uncomment for frontend |
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119 | typeset -r libIGCM_POST=${libIGCM} |
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120 | |
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121 | #==================================================== |
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122 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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123 | typeset -r R_EXE="${MODIPSL}/bin" |
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124 | |
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125 | #==================================================== |
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126 | #- SUBMIT_DIR : submission dir |
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127 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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128 | |
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129 | #==================================================== |
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130 | #- ARCHIVE (dedicated to large files) |
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131 | typeset -r ARCHIVE=${CCCSTOREDIR} |
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132 | |
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133 | #- ARCHIVE (dedicated to small/medium files) |
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134 | typeset -r STORAGE=${CCCWORKDIR} |
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135 | |
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136 | #==================================================== |
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137 | #- IN |
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138 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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139 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/dmnfs/cont003/p24data} |
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140 | |
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141 | #==================================================== |
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142 | #- R_OUT |
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143 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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144 | |
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145 | #==================================================== |
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146 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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147 | typeset -r R_FIG=${STORAGE}/IGCM_OUT |
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148 | |
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149 | #==================================================== |
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150 | #- R_BUF (ONLY FOR double copy an scratch) |
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151 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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152 | |
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153 | #==================================================== |
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154 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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155 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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156 | |
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157 | #==================================================== |
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158 | #- OUT_POST |
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159 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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160 | |
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161 | #==================================================== |
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162 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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163 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${LOCALTMPDIR}} |
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164 | |
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165 | #==================================================== |
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166 | #- HOST_MPIRUN_COMMAND |
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167 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} |
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168 | |
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169 | #==================================================== |
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170 | #- Max number of arguments passed to nco operator or demigration command |
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171 | UNIX_MAX_LIMIT=360 |
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172 | |
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173 | #==================================================== |
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174 | #- set PackDefault true on NEC SX9 |
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175 | PackDefault=true |
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176 | |
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177 | #==================================================== |
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178 | #- Default number of MPI task for IPSL coupled model |
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179 | #- required for backward compatibility |
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180 | #- |
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181 | DEFAULT_NUM_PROC_OCE=1 |
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182 | DEFAULT_NUM_PROC_CPL=1 |
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183 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) |
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184 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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185 | |
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186 | #D-#================================================== |
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187 | #D-function IGCM_sys_RshMaster |
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188 | #D-* Purpose: Connection to frontend machine. |
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189 | #D-* Examples: |
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190 | #D- |
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191 | function IGCM_sys_RshMaster { |
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192 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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193 | ssh -t ${MASTER} /bin/ksh <<-EOF |
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194 | export libIGCM=${libIGCM} |
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195 | export DEBUG_debug=${DEBUG_debug} |
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196 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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197 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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198 | ${@} |
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199 | EOF |
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200 | if [ $? -gt 0 ] ; then |
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201 | echo "IGCM_sys_RshMaster : erreur." |
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202 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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203 | fi |
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204 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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205 | } |
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206 | |
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207 | #D-#================================================== |
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208 | #D-function IGCM_sys_RshArchive |
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209 | #D-* Purpose: Archive rsh command |
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210 | #D-* Examples: |
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211 | #D- |
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212 | function IGCM_sys_RshArchive { |
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213 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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214 | /bin/ksh <<-EOF |
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215 | ${@} |
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216 | EOF |
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217 | if [ $? -gt 0 ] ; then |
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218 | echo "IGCM_sys_RshArchive : erreur." |
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219 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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220 | fi |
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221 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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222 | } |
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223 | |
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224 | #D-#================================================== |
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225 | #D-function IGCM_sys_RshPost |
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226 | #D-* Purpose: Post-process rsh command |
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227 | #D-* Examples: |
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228 | #D- |
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229 | function IGCM_sys_RshPost { |
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230 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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231 | if ( $DEBUG_sys ) ; then |
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232 | echo "IGCM_sys_RshPost :" $@ |
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233 | fi |
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234 | |
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235 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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236 | #cat tmp_IGCM_sys_RshPost_$$ |
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237 | # keep standard input (stdin) for the loop onto temporary file |
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238 | cat >tmp_IGCM_sys_RshPost_$$ |
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239 | |
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240 | # ============ FRONTEND START ============ # |
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241 | |
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242 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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243 | if [ $? -gt 0 ] ; then |
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244 | echo "IGCM_sys_RshPost : erreur." |
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245 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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246 | fi |
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247 | \rm tmp_IGCM_sys_RshPost_$$ |
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248 | |
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249 | # ============ FRONTEND END ============ # |
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250 | |
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251 | # ============ CESIUM START ============ # |
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252 | # typeset NB_ESSAI DELAI status i |
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253 | # # number of tentative |
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254 | # NB_ESSAI=10 |
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255 | # # time delay between tentative |
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256 | # DELAI=10 |
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257 | # (( i = 0 )) |
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258 | # while [ $i -lt $NB_ESSAI ] ; do |
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259 | # ssh -t mercure01 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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260 | # status=$? |
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261 | # if [ ${status} -gt 0 ]; then |
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262 | # IGCM_debug_Print 2 "IGCM_sys_RshPost : ssh failed ${i}/${NB_ESSAI}" |
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263 | # IGCM_debug_Print 2 "IGCM_sys_RshPost : sleep ${DELAI} seconds and try again." |
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264 | # sleep $DELAI |
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265 | # else |
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266 | # break |
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267 | # fi |
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268 | # (( i = i + 1 )) |
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269 | # done |
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270 | # # delete temporary file |
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271 | # /bin/rm tmp_IGCM_sys_RshPost_$$ |
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272 | # ============ CESIUM END ============ # |
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273 | |
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274 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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275 | } |
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276 | |
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277 | #D-#================================================== |
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278 | #D-function IGCM_sys_SendMail |
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279 | #D-* Purpose: Send mail when simulation is over |
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280 | #D-* Examples: |
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281 | #D- |
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282 | function IGCM_sys_SendMail { |
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283 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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284 | if ( $DEBUG_sys ) ; then |
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285 | echo "IGCM_sys_SendMail :" $@ |
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286 | fi |
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287 | |
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288 | if ( ${ExitFlag} ) ; then |
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289 | status=failed |
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290 | else |
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291 | status=completed |
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292 | fi |
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293 | cat << END_MAIL > job_end.mail |
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294 | Dear ${LOGIN}, |
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295 | |
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296 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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297 | Job started : ${DateBegin} |
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298 | Job ended : ${DateEnd} |
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299 | Output files are available in ${R_SAVE} |
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300 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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301 | Pre-packed files are temporarily available in ${R_BUFR} |
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302 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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303 | END_MAIL |
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304 | |
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305 | if [ X"${config_UserChoices_MailName}" != X ] ; then |
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306 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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307 | elif [ -f ~/.forward ] ; then |
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308 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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309 | else |
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310 | mailx -s "${config_UserChoices_JobName} ${status}" ${LOGIN} < job_end.mail |
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311 | fi |
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312 | |
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313 | if [ $? -gt 0 ] ; then |
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314 | echo "IGCM_sys_SendMail : erreur." |
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315 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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316 | fi |
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317 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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318 | } |
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319 | |
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320 | #D-#================================================== |
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321 | #D-function IGCM_sys_Mkdir |
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322 | #D-* Purpose: Master locale mkdir command |
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323 | #D-* Examples: |
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324 | #D- |
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325 | function IGCM_sys_Mkdir { |
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326 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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327 | if ( $DEBUG_sys ) ; then |
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328 | echo "IGCM_sys_Mkdir :" $@ |
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329 | fi |
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330 | if [ ! -d ${1} ]; then |
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331 | \mkdir -p $1 |
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332 | if [ $? -gt 0 ] ; then |
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333 | echo "IGCM_sys_Mkdir : erreur." |
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334 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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335 | fi |
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336 | fi |
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337 | # vérification : |
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338 | if [ ! -d ${1} ] ; then |
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339 | echo "IGCM_sys_Mkdir : erreur." |
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340 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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341 | fi |
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342 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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343 | } |
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344 | |
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345 | #D-#================================================== |
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346 | #D-function IGCM_sys_MkdirArchive |
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347 | #D-* Purpose: Mkdir on Archive |
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348 | #D-* Examples: |
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349 | #D- |
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350 | function IGCM_sys_MkdirArchive { |
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351 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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352 | if ( $DEBUG_sys ) ; then |
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353 | echo "IGCM_sys_MkdirArchive :" $@ |
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354 | fi |
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355 | #- creation de repertoire sur le serveur fichier |
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356 | if [ ! -d ${1} ]; then |
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357 | \mkdir -p $1 |
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358 | if [ $? -gt 0 ] ; then |
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359 | echo "IGCM_sys_MkdirArchive : erreur." |
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360 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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361 | fi |
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362 | fi |
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363 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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364 | } |
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365 | |
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366 | #D-#================================================== |
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367 | #D-function IGCM_sys_MkdirWork |
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368 | #D-* Purpose: Mkdir on Work |
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369 | #D-* Examples: |
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370 | #D- |
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371 | function IGCM_sys_MkdirWork { |
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372 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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373 | if ( $DEBUG_sys ) ; then |
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374 | echo "IGCM_sys_MkdirWork :" $@ |
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375 | fi |
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376 | #- creation de repertoire sur le serveur fichier |
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377 | if [ ! -d ${1} ]; then |
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378 | \mkdir -p $1 |
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379 | if [ $? -gt 0 ] ; then |
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380 | echo "IGCM_sys_MkdirWork : erreur." |
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381 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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382 | fi |
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383 | fi |
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384 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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385 | } |
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386 | |
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387 | #D-#================================================== |
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388 | #D-function IGCM_sys_Cd |
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389 | #D-* Purpose: master cd command |
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390 | #D-* Examples: |
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391 | #D- |
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392 | function IGCM_sys_Cd { |
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393 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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394 | if ( $DEBUG_sys ) ; then |
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395 | echo "IGCM_sys_Cd :" $@ |
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396 | fi |
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397 | \cd $1 |
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398 | if [ $? -gt 0 ] ; then |
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399 | echo "IGCM_sys_Cd : erreur." |
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400 | IGCM_debug_Exit "IGCM_sys_Cd" |
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401 | fi |
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402 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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403 | } |
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404 | |
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405 | #D-#================================================== |
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406 | #D-function IGCM_sys_Chmod |
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407 | #D-* Purpose: Chmod |
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408 | #D-* Examples: |
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409 | #D- |
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410 | function IGCM_sys_Chmod { |
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411 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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412 | if ( $DEBUG_sys ) ; then |
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413 | echo "IGCM_sys_Chmod :" $@ |
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414 | fi |
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415 | if [ $DRYRUN -le 1 ]; then |
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416 | \chmod $@ |
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417 | if [ $? -gt 0 ] ; then |
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418 | echo "IGCM_sys_Chmod : erreur." |
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419 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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420 | fi |
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421 | else |
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422 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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423 | fi |
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424 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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425 | } |
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426 | |
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427 | #D-#================================================== |
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428 | #D-function IGCM_sys_FileSize |
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429 | #D-* Purpose: Filesize |
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430 | #D-* Examples: |
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431 | #D- |
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432 | function IGCM_sys_FileSize { |
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433 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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434 | |
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435 | typeset sizeF |
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436 | set +A sizeF -- $( ls -la ${1} ) |
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437 | if [ $? -gt 0 ] ; then |
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438 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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439 | fi |
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440 | eval ${2}=${sizeF[4]} |
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441 | |
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442 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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443 | } |
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444 | |
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445 | #D-#================================================== |
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446 | #D-function IGCM_sys_TestDir |
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447 | #D-* Purpose: Test Directory that must exists |
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448 | #D-* Examples: |
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449 | #D- |
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450 | function IGCM_sys_TestDir { |
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451 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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452 | if ( $DEBUG_sys ) ; then |
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453 | echo "IGCM_sys_TestDir :" $@ |
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454 | fi |
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455 | typeset ExistFlag |
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456 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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457 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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458 | |
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459 | return ${ExistFlag} |
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460 | } |
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461 | |
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462 | #D-#================================================== |
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463 | #D-function IGCM_sys_TestDirArchive |
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464 | #D-* Purpose: Test Directory that must exists on Archive |
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465 | #D-* Examples: |
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466 | #D- |
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467 | function IGCM_sys_TestDirArchive { |
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468 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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469 | if ( $DEBUG_sys ) ; then |
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470 | echo "IGCM_sys_TestDirArchive :" $@ |
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471 | fi |
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472 | typeset ExistFlag |
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473 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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474 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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475 | |
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476 | return ${ExistFlag} |
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477 | } |
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478 | |
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479 | #D-#================================================== |
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480 | #D-function IGCM_sys_IsFileArchived |
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481 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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482 | #D-* Examples: |
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483 | #D- |
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484 | function IGCM_sys_IsFileArchived { |
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485 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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486 | if ( $DEBUG_sys ) ; then |
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487 | echo "IGCM_sys_IsFileArchived :" $@ |
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488 | fi |
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489 | typeset IsArchivedFlag |
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490 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
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491 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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492 | |
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493 | return ${IsArchivedFlag} |
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494 | } |
---|
495 | |
---|
496 | #D-#================================================== |
---|
497 | #D-function IGCM_sys_TestFileArchive |
---|
498 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
499 | #D-* Examples: |
---|
500 | #D- |
---|
501 | function IGCM_sys_TestFileArchive { |
---|
502 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
503 | typeset ExistFlag |
---|
504 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
505 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
506 | |
---|
507 | return ${ExistFlag} |
---|
508 | } |
---|
509 | |
---|
510 | #D-#================================================== |
---|
511 | #D-function IGCM_sys_TestFileBuffer |
---|
512 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
513 | #D-* Examples: |
---|
514 | #D- |
---|
515 | function IGCM_sys_TestFileBuffer { |
---|
516 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
517 | typeset ExistFlag |
---|
518 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
519 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
520 | |
---|
521 | return ${ExistFlag} |
---|
522 | } |
---|
523 | |
---|
524 | #D-#================================================== |
---|
525 | #D-function IGCM_sys_CountFileArchive |
---|
526 | #D-* Purpose: Count files on Archive filesystem |
---|
527 | #D-* Examples: |
---|
528 | #D- |
---|
529 | function IGCM_sys_CountFileArchive { |
---|
530 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
531 | ls ${@} 2>/dev/null | wc -l |
---|
532 | if [ $? -gt 0 ] ; then |
---|
533 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
534 | fi |
---|
535 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
536 | } |
---|
537 | |
---|
538 | #D-#================================================== |
---|
539 | #D-function IGCM_sys_CountFileBuffer |
---|
540 | #D-* Purpose: Count files on Scratch filesystem |
---|
541 | #D-* Examples: |
---|
542 | #D- |
---|
543 | function IGCM_sys_CountFileBuffer { |
---|
544 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
545 | ls ${@} 2>/dev/null | wc -l |
---|
546 | if [ $? -gt 0 ] ; then |
---|
547 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
548 | fi |
---|
549 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
550 | } |
---|
551 | |
---|
552 | #D-#================================================== |
---|
553 | #D-function IGCM_sys_Tree |
---|
554 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
555 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
556 | #D- |
---|
557 | function IGCM_sys_Tree { |
---|
558 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
559 | if ( $DEBUG_sys ) ; then |
---|
560 | echo "IGCM_sys_Tree :" $@ |
---|
561 | fi |
---|
562 | |
---|
563 | \ls -lR ${@} |
---|
564 | |
---|
565 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
566 | } |
---|
567 | |
---|
568 | #D-#================================================== |
---|
569 | #D-function IGCM_sys_Tar |
---|
570 | #D-* Purpose: master tar command |
---|
571 | #D-* Examples: |
---|
572 | #D- |
---|
573 | function IGCM_sys_Tar { |
---|
574 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
575 | if ( $DEBUG_sys ) ; then |
---|
576 | echo "IGCM_sys_Tar :" $@ |
---|
577 | fi |
---|
578 | \tar cf $@ |
---|
579 | if [ $? -gt 0 ] ; then |
---|
580 | echo "IGCM_sys_Tar : erreur." |
---|
581 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
582 | fi |
---|
583 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
584 | } |
---|
585 | |
---|
586 | #D-#================================================== |
---|
587 | #D-function IGCM_sys_UnTar |
---|
588 | #D-* Purpose: master un-tar command |
---|
589 | #D-* Examples: |
---|
590 | #D- |
---|
591 | function IGCM_sys_UnTar { |
---|
592 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
593 | if ( $DEBUG_sys ) ; then |
---|
594 | echo "IGCM_sys_UnTar :" $@ |
---|
595 | fi |
---|
596 | \tar xvf $1 |
---|
597 | if [ $? -gt 0 ] ; then |
---|
598 | echo "IGCM_sys_UnTar : erreur." |
---|
599 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
600 | fi |
---|
601 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
602 | } |
---|
603 | |
---|
604 | #D-#================================================== |
---|
605 | #D-function IGCM_sys_Qsub |
---|
606 | #D-* Purpose: Qsub new job |
---|
607 | #D-* Examples: |
---|
608 | #D- |
---|
609 | function IGCM_sys_Qsub { |
---|
610 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
611 | if ( $DEBUG_sys ) ; then |
---|
612 | echo "IGCM_sys_Qsub :" $@ |
---|
613 | fi |
---|
614 | /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
615 | if [ $? -gt 0 ] ; then |
---|
616 | echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." |
---|
617 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
618 | fi |
---|
619 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
620 | } |
---|
621 | |
---|
622 | #D-#================================================== |
---|
623 | #D-function IGCM_sys_QsubPost |
---|
624 | #D-* Purpose: Qsub new job on scalaire |
---|
625 | #D-* Examples: |
---|
626 | #D- |
---|
627 | function IGCM_sys_QsubPost { |
---|
628 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
629 | if ( $DEBUG_sys ) ; then |
---|
630 | echo "IGCM_sys_QsubPost :" $@ |
---|
631 | fi |
---|
632 | |
---|
633 | # ============ FRONTEND START ============ # |
---|
634 | |
---|
635 | /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} |
---|
636 | |
---|
637 | # ============ FRONTEND END ============ # |
---|
638 | |
---|
639 | # ============ CESIUM START ============ # |
---|
640 | # typeset NB_ESSAI DELAI status i |
---|
641 | # # number of tentative |
---|
642 | # NB_ESSAI=10 |
---|
643 | # # time delay between tentative |
---|
644 | # DELAI=10 |
---|
645 | # (( i = 0 )) |
---|
646 | # while [ $i -lt $NB_ESSAI ] ; do |
---|
647 | # /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job |
---|
648 | # status=$? |
---|
649 | # if [ ${status} -gt 0 ]; then |
---|
650 | # sleep $DELAI |
---|
651 | # else |
---|
652 | # break |
---|
653 | # fi |
---|
654 | # (( i = i + 1 )) |
---|
655 | # done |
---|
656 | # ============ CESIUM END ============ # |
---|
657 | |
---|
658 | if [ $? -gt 0 ] ; then |
---|
659 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
660 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
661 | fi |
---|
662 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
663 | } |
---|
664 | |
---|
665 | #D-************************* |
---|
666 | #D- File transfer functions |
---|
667 | #D-************************* |
---|
668 | #D- |
---|
669 | |
---|
670 | #D-#================================================== |
---|
671 | #D-function IGCM_sys_Rsync_out |
---|
672 | #D-* Purpose: treat return val of rsync |
---|
673 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
674 | #D- Error values and explanations can depend on your system version. |
---|
675 | function IGCM_sys_Rsync_out { |
---|
676 | RET=$1 |
---|
677 | if [ ! $RET ] ; then |
---|
678 | echo "rsync error !" |
---|
679 | fi |
---|
680 | |
---|
681 | if [ $MYLANG = "fr" ]; then |
---|
682 | case $RET in |
---|
683 | 0) return ;; |
---|
684 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
685 | echo "Erreur de syntaxe ou d'utilisation." |
---|
686 | return;; |
---|
687 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
688 | echo "Incompatibilité de protocole." |
---|
689 | return;; |
---|
690 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
691 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
692 | echo "répertoires" |
---|
693 | return;; |
---|
694 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
695 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
696 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
697 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
698 | echo "pas par le serveur a été spécifiée." |
---|
699 | return;; |
---|
700 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
701 | echo "Erreur dans le socket d'entrée sortie" |
---|
702 | return;; |
---|
703 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
704 | echo "Erreur d'entrée sortie fichier" |
---|
705 | return;; |
---|
706 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
707 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
708 | return;; |
---|
709 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
710 | echo "Erreur avec les diagnostics du programme" |
---|
711 | return;; |
---|
712 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
713 | echo "Erreur dans le code IPC" |
---|
714 | return;; |
---|
715 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
716 | echo "SIGUSR1 ou SIGINT reçu" |
---|
717 | return;; |
---|
718 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
719 | echo "Une erreur retournée par waitpid()" |
---|
720 | return;; |
---|
721 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
722 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
723 | return;; |
---|
724 | 23) echo "" |
---|
725 | echo "Erreur fichier inexistant" |
---|
726 | return;; |
---|
727 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
728 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
729 | return;; |
---|
730 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
731 | return;; |
---|
732 | esac |
---|
733 | elif [ $MYLANG = "en" ] ; then |
---|
734 | case $RET in |
---|
735 | 0) return;; |
---|
736 | 1) echo "rsync error : Syntax or usage error " |
---|
737 | return;; |
---|
738 | 2) echo "rsync error : Protocol incompatibility " |
---|
739 | return;; |
---|
740 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
741 | return;; |
---|
742 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
743 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
744 | echo "them; or an option was specified that is supported by the client and" |
---|
745 | echo "not by the server." |
---|
746 | return;; |
---|
747 | 5) echo "rsync error : Error starting client-server protocol" |
---|
748 | return;; |
---|
749 | 10) echo "rsync error : Error in socket I/O " |
---|
750 | return;; |
---|
751 | 11) echo "rsync error : Error in file I/O " |
---|
752 | return;; |
---|
753 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
754 | return;; |
---|
755 | 13) echo "rsync error : Errors with program diagnostics " |
---|
756 | return;; |
---|
757 | 14) echo "rsync error : Error in IPC code " |
---|
758 | return;; |
---|
759 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
760 | return;; |
---|
761 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
762 | return;; |
---|
763 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
764 | return;; |
---|
765 | 23) echo "rsync error : Partial transfer due to error" |
---|
766 | return;; |
---|
767 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
768 | return;; |
---|
769 | 30) echo "rsync error : Timeout in data send/receive " |
---|
770 | return;; |
---|
771 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
772 | return;; |
---|
773 | esac |
---|
774 | else |
---|
775 | echo "unknown language $MYLANG." |
---|
776 | return |
---|
777 | fi |
---|
778 | } |
---|
779 | |
---|
780 | #D-#================================================== |
---|
781 | #D-function IGCM_sys_Miror_libIGCM |
---|
782 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
783 | #D-* Examples: |
---|
784 | #D- |
---|
785 | function IGCM_sys_Mirror_libIGCM { |
---|
786 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
787 | if ( $DEBUG_sys ) ; then |
---|
788 | echo "IGCM_sys_Mirror_libIGCM" |
---|
789 | fi |
---|
790 | |
---|
791 | typeset RET DEST |
---|
792 | |
---|
793 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
794 | |
---|
795 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
796 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
797 | RET=$? |
---|
798 | |
---|
799 | if [ ${RET} -gt 0 ] ; then |
---|
800 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
801 | cat out_rsync |
---|
802 | fi |
---|
803 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
804 | } |
---|
805 | |
---|
806 | #D-#================================================== |
---|
807 | #D-function IGCM_sys_Cp |
---|
808 | #D-* Purpose: generic cp |
---|
809 | #D-* Examples: |
---|
810 | #D- |
---|
811 | function IGCM_sys_Cp { |
---|
812 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
813 | if ( $DEBUG_sys ) ; then |
---|
814 | echo "IGCM_sys_Cp :" $@ |
---|
815 | fi |
---|
816 | |
---|
817 | typeset RET |
---|
818 | |
---|
819 | echo cp $@ > out_rsync 2>&1 |
---|
820 | \cp $@ >> out_rsync 2>&1 |
---|
821 | RET=$? |
---|
822 | |
---|
823 | if [ ${RET} -gt 0 ] ; then |
---|
824 | echo "IGCM_sys_Cp : error." |
---|
825 | cat out_rsync |
---|
826 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
827 | else |
---|
828 | \rm out_rsync |
---|
829 | fi |
---|
830 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
831 | } |
---|
832 | |
---|
833 | #D-#================================================== |
---|
834 | #D-function IGCM_sys_Rm |
---|
835 | #D-* Purpose: generic rm |
---|
836 | #D-* Examples: |
---|
837 | #D- |
---|
838 | function IGCM_sys_Rm { |
---|
839 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
840 | if ( $DEBUG_sys ) ; then |
---|
841 | echo "IGCM_sys_Rm :" $@ |
---|
842 | fi |
---|
843 | |
---|
844 | typeset RET |
---|
845 | |
---|
846 | echo rm $@ > out_rsync 2>&1 |
---|
847 | \rm $@ >> out_rsync 2>&1 |
---|
848 | RET=$? |
---|
849 | |
---|
850 | if [ ${RET} -gt 0 ] ; then |
---|
851 | echo "IGCM_sys_Rm : error." |
---|
852 | cat out_rsync |
---|
853 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
854 | else |
---|
855 | \rm out_rsync |
---|
856 | fi |
---|
857 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
858 | } |
---|
859 | |
---|
860 | #D-#================================================== |
---|
861 | #D-function IGCM_sys_Mv |
---|
862 | #D-* Purpose: generic move |
---|
863 | #D-* Examples: |
---|
864 | #D- |
---|
865 | function IGCM_sys_Mv { |
---|
866 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
867 | if ( $DEBUG_sys ) ; then |
---|
868 | echo "IGCM_sys_Mv :" $@ |
---|
869 | fi |
---|
870 | |
---|
871 | if [ $DRYRUN = 0 ]; then |
---|
872 | |
---|
873 | typeset RET |
---|
874 | |
---|
875 | echo mv $@ > out_rsync 2>&1 |
---|
876 | \mv $@ >> out_rsync 2>&1 |
---|
877 | RET=$? |
---|
878 | |
---|
879 | if [ ${RET} -gt 0 ] ; then |
---|
880 | echo "IGCM_sys_Mv : error in mv." |
---|
881 | cat out_rsync |
---|
882 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
883 | else |
---|
884 | \rm out_rsync |
---|
885 | fi |
---|
886 | else |
---|
887 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
888 | fi |
---|
889 | |
---|
890 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
891 | } |
---|
892 | |
---|
893 | #D-#================================================== |
---|
894 | #D-function IGCM_sys_Put_Dir |
---|
895 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
896 | #D-* Examples: |
---|
897 | #D- |
---|
898 | function IGCM_sys_Put_Dir { |
---|
899 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
900 | if ( $DEBUG_sys ) ; then |
---|
901 | echo "IGCM_sys_Put_Dir :" $@ |
---|
902 | fi |
---|
903 | if [ $DRYRUN = 0 ]; then |
---|
904 | if [ ! -d ${1} ] ; then |
---|
905 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
906 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
907 | return |
---|
908 | fi |
---|
909 | |
---|
910 | typeset RET |
---|
911 | |
---|
912 | # Only if we use rsync |
---|
913 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
914 | # |
---|
915 | #USUAL WAY |
---|
916 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
917 | RET=$? |
---|
918 | |
---|
919 | if [ ${RET} -gt 0 ] ; then |
---|
920 | echo "IGCM_sys_Put_Dir : error." |
---|
921 | cat out_rsync |
---|
922 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
923 | else |
---|
924 | \rm out_rsync |
---|
925 | fi |
---|
926 | else |
---|
927 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
928 | fi |
---|
929 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
930 | } |
---|
931 | |
---|
932 | #D-#================================================== |
---|
933 | #D-function IGCM_sys_Get_Dir |
---|
934 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
935 | #D-* Examples: |
---|
936 | #D- |
---|
937 | function IGCM_sys_Get_Dir { |
---|
938 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
939 | if ( $DEBUG_sys ) ; then |
---|
940 | echo "IGCM_sys_Get_Dir :" $@ |
---|
941 | fi |
---|
942 | if [ $DRYRUN = 0 ]; then |
---|
943 | # if [ ! -d ${1} ] ; then |
---|
944 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
945 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
946 | # return |
---|
947 | # fi |
---|
948 | |
---|
949 | typeset RET |
---|
950 | |
---|
951 | # Only if we use rsync |
---|
952 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
953 | # |
---|
954 | # USUAL WAY |
---|
955 | # add dmfind/dmget (to demigrate all offline files) : |
---|
956 | #dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget |
---|
957 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
958 | RET=$? |
---|
959 | |
---|
960 | if [ ${RET} -gt 0 ] ; then |
---|
961 | echo "IGCM_sys_Get_Dir : error." |
---|
962 | cat out_rsync |
---|
963 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
964 | else |
---|
965 | \rm out_rsync |
---|
966 | fi |
---|
967 | else |
---|
968 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
969 | fi |
---|
970 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
971 | } |
---|
972 | |
---|
973 | #==================================================== |
---|
974 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
975 | if ( $MirrorlibIGCM ) ; then |
---|
976 | IGCM_sys_Mirror_libIGCM |
---|
977 | fi |
---|
978 | |
---|
979 | #D-#================================================== |
---|
980 | #D-function IGCM_sys_Put_Rest |
---|
981 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
982 | #D- File and target directory must exist. |
---|
983 | #D-* Examples: |
---|
984 | #D- |
---|
985 | function IGCM_sys_Put_Rest { |
---|
986 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
987 | if ( $DEBUG_sys ) ; then |
---|
988 | echo "IGCM_sys_Put_Rest :" $@ |
---|
989 | fi |
---|
990 | if [ $DRYRUN = 0 ]; then |
---|
991 | if [ ! -f ${1} ] ; then |
---|
992 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
993 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
994 | fi |
---|
995 | |
---|
996 | typeset RET |
---|
997 | # |
---|
998 | if [ X${JobType} = XRUN ] ; then |
---|
999 | IGCM_sys_Chmod 444 ${1} |
---|
1000 | fi |
---|
1001 | |
---|
1002 | # |
---|
1003 | # USUAL WAY |
---|
1004 | \cp $1 $2 > out_rsync 2>&1 |
---|
1005 | RET=$? |
---|
1006 | |
---|
1007 | # #RSYNC WITH NETWORK SSH CALL |
---|
1008 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
1009 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
1010 | |
---|
1011 | # #RSYNC WITH NFS USE |
---|
1012 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
1013 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
1014 | |
---|
1015 | # RET=$? |
---|
1016 | # IGCM_sys_Rsync_out $RET |
---|
1017 | |
---|
1018 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
1019 | # (( RET=RET+$? )) |
---|
1020 | |
---|
1021 | if [ ${RET} -gt 0 ] ; then |
---|
1022 | echo "IGCM_sys_Put_Rest : error." |
---|
1023 | cat out_rsync |
---|
1024 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
1025 | else |
---|
1026 | \rm out_rsync |
---|
1027 | fi |
---|
1028 | else |
---|
1029 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1030 | fi |
---|
1031 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
1032 | } |
---|
1033 | |
---|
1034 | #D-#================================================== |
---|
1035 | #D-function IGCM_sys_PutBuffer_Rest |
---|
1036 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
1037 | #D- File and target directory must exist. |
---|
1038 | #D-* Examples: |
---|
1039 | #D- |
---|
1040 | function IGCM_sys_PutBuffer_Rest { |
---|
1041 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
1042 | if ( $DEBUG_sys ) ; then |
---|
1043 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
1044 | fi |
---|
1045 | if [ $DRYRUN = 0 ]; then |
---|
1046 | if [ ! -f ${1} ] ; then |
---|
1047 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
1048 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
1049 | fi |
---|
1050 | |
---|
1051 | typeset RET |
---|
1052 | # |
---|
1053 | if [ X${JobType} = XRUN ] ; then |
---|
1054 | IGCM_sys_Chmod 444 ${1} |
---|
1055 | fi |
---|
1056 | |
---|
1057 | # |
---|
1058 | # USUAL WAY |
---|
1059 | \cp $1 $2 > out_rsync 2>&1 |
---|
1060 | RET=$? |
---|
1061 | |
---|
1062 | if [ ${RET} -gt 0 ] ; then |
---|
1063 | echo "IGCM_sys_PutBuffer_Rest : error." |
---|
1064 | cat out_rsync |
---|
1065 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
1066 | else |
---|
1067 | \rm out_rsync |
---|
1068 | fi |
---|
1069 | else |
---|
1070 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1071 | fi |
---|
1072 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
1073 | } |
---|
1074 | |
---|
1075 | #D-#================================================== |
---|
1076 | #D-function IGCM_sys_Put_Out |
---|
1077 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
1078 | #D-* Examples: |
---|
1079 | #D- |
---|
1080 | function IGCM_sys_Put_Out { |
---|
1081 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
1082 | if ( $DEBUG_sys ) ; then |
---|
1083 | echo "IGCM_sys_Put_Out :" $@ |
---|
1084 | fi |
---|
1085 | if [ $DRYRUN = 0 ]; then |
---|
1086 | if [ ! -f ${1} ] ; then |
---|
1087 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
1088 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
1089 | return 1 |
---|
1090 | fi |
---|
1091 | # |
---|
1092 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
1093 | # |
---|
1094 | typeset RET |
---|
1095 | |
---|
1096 | #===================================================== |
---|
1097 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
1098 | #===================================================== |
---|
1099 | |
---|
1100 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
1101 | #if [ $? -eq 0 ] ; then |
---|
1102 | # typeset WORKPATH FILEPATH |
---|
1103 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
1104 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
1105 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
1106 | # # |
---|
1107 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
1108 | #fi |
---|
1109 | |
---|
1110 | if [ X${JobType} = XRUN ] ; then |
---|
1111 | if [ X${3} = X ] ; then |
---|
1112 | IGCM_sys_Chmod 444 ${1} |
---|
1113 | fi |
---|
1114 | fi |
---|
1115 | # |
---|
1116 | # USUAL WAY |
---|
1117 | \cp $1 $2 > out_rsync 2>&1 |
---|
1118 | RET=$? |
---|
1119 | |
---|
1120 | # #RSYNC WITH NETWORK SSH CALL |
---|
1121 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
1122 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
1123 | |
---|
1124 | # #RSYNC WITH NFS USE |
---|
1125 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
1126 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
1127 | |
---|
1128 | # RET=$? |
---|
1129 | # IGCM_sys_Rsync_out $RET |
---|
1130 | |
---|
1131 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
1132 | # (( RET=RET+$? )) |
---|
1133 | |
---|
1134 | if [ ${RET} -gt 0 ] ; then |
---|
1135 | echo "IGCM_sys_Put_Out : error." |
---|
1136 | cat out_rsync |
---|
1137 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
1138 | else |
---|
1139 | \rm out_rsync |
---|
1140 | fi |
---|
1141 | else |
---|
1142 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1143 | fi |
---|
1144 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
1145 | return 0 |
---|
1146 | } |
---|
1147 | |
---|
1148 | #D-#================================================== |
---|
1149 | #D-function IGCM_sys_PutBuffer_Out |
---|
1150 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
1151 | #D-* Examples: |
---|
1152 | #D- |
---|
1153 | function IGCM_sys_PutBuffer_Out { |
---|
1154 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
1155 | if ( $DEBUG_sys ) ; then |
---|
1156 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
1157 | fi |
---|
1158 | if [ $DRYRUN = 0 ]; then |
---|
1159 | if [ ! -f ${1} ] ; then |
---|
1160 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
1161 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
1162 | return 1 |
---|
1163 | fi |
---|
1164 | # |
---|
1165 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
1166 | # |
---|
1167 | typeset RET |
---|
1168 | |
---|
1169 | if [ X${JobType} = XRUN ] ; then |
---|
1170 | if [ X${3} = X ] ; then |
---|
1171 | IGCM_sys_Chmod 444 ${1} |
---|
1172 | fi |
---|
1173 | fi |
---|
1174 | # |
---|
1175 | # USUAL WAY |
---|
1176 | \cp $1 $2 > out_rsync 2>&1 |
---|
1177 | RET=$? |
---|
1178 | |
---|
1179 | if [ ${RET} -gt 0 ] ; then |
---|
1180 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
1181 | cat out_rsync |
---|
1182 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
1183 | else |
---|
1184 | \rm out_rsync |
---|
1185 | fi |
---|
1186 | else |
---|
1187 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1188 | fi |
---|
1189 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
1190 | return 0 |
---|
1191 | } |
---|
1192 | |
---|
1193 | #D-#================================================== |
---|
1194 | #D-function IGCM_sys_Get |
---|
1195 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
1196 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
1197 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
1198 | function IGCM_sys_Get { |
---|
1199 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
1200 | |
---|
1201 | typeset DEST RET dm_liste ifile target file_work |
---|
1202 | |
---|
1203 | if ( $DEBUG_sys ) ; then |
---|
1204 | echo "IGCM_sys_Get :" $@ |
---|
1205 | fi |
---|
1206 | if [ $DRYRUN -le 2 ]; then |
---|
1207 | if [ X${1} = X'/l' ] ; then |
---|
1208 | # test if the first file is present in the old computation : |
---|
1209 | eval set +A dm_liste \${${2}} |
---|
1210 | else |
---|
1211 | eval set +A dm_liste ${1} |
---|
1212 | fi |
---|
1213 | eval DEST=\${${#}} |
---|
1214 | |
---|
1215 | #===================================================== |
---|
1216 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
1217 | #===================================================== |
---|
1218 | |
---|
1219 | # Is it an R_OUT file (not R_IN) ? |
---|
1220 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
1221 | #if [ $? -eq 0 ] ; then |
---|
1222 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
1223 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
1224 | # if [ -f ${file_work[0]} ] ; then |
---|
1225 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
1226 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
1227 | # return |
---|
1228 | # fi |
---|
1229 | #fi |
---|
1230 | |
---|
1231 | # test if the (first) file is present in the old computation : |
---|
1232 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
1233 | RET=$? |
---|
1234 | if [ ${RET} -gt 0 ] ; then |
---|
1235 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
1236 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
1237 | fi |
---|
1238 | |
---|
1239 | #dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
1240 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
1241 | RET=$? |
---|
1242 | if [ ${RET} -gt 0 ] ; then |
---|
1243 | echo "WARNING IGCM_sys_Get : demigration error." |
---|
1244 | cat out_rsync |
---|
1245 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
1246 | fi |
---|
1247 | |
---|
1248 | #if [ ${RET} -gt 0 ] ; then |
---|
1249 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
1250 | # cat out_rsync |
---|
1251 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
1252 | # sleep 30 |
---|
1253 | # echo "We try another time" |
---|
1254 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
1255 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
1256 | # RET=$? |
---|
1257 | # if [ ${RET} -gt 0 ] ; then |
---|
1258 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
1259 | # cat out_rsync |
---|
1260 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
1261 | # fi |
---|
1262 | # else |
---|
1263 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
1264 | # cat out_rsync |
---|
1265 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
1266 | # fi |
---|
1267 | #fi |
---|
1268 | |
---|
1269 | #USUAL WAY |
---|
1270 | if [ X${1} = X'/l' ] ; then |
---|
1271 | (( RET=0 )) |
---|
1272 | for target in ${dm_liste[*]} ; do |
---|
1273 | local_file=$( basename ${target} ) |
---|
1274 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
1275 | (( RET = RET + $? )) |
---|
1276 | done |
---|
1277 | else |
---|
1278 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
1279 | RET=$? |
---|
1280 | fi |
---|
1281 | |
---|
1282 | # #RSYNC WITH NETWORK SSH CALL |
---|
1283 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
1284 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
1285 | |
---|
1286 | # #RSYNC WITH NFS USE |
---|
1287 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
1288 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
1289 | |
---|
1290 | # RET=$? |
---|
1291 | # IGCM_sys_Rsync_out $RET |
---|
1292 | |
---|
1293 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
1294 | # (( RET=RET+$? )) |
---|
1295 | |
---|
1296 | if [ ${RET} -gt 0 ] ; then |
---|
1297 | echo "IGCM_sys_Get : copy error." |
---|
1298 | cat out_rsync |
---|
1299 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
1300 | else |
---|
1301 | \rm out_rsync |
---|
1302 | fi |
---|
1303 | else |
---|
1304 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1305 | fi |
---|
1306 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
1307 | } |
---|
1308 | |
---|
1309 | #D-#================================================== |
---|
1310 | #D-function IGCM_sys_GetBuffer |
---|
1311 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
1312 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
1313 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
1314 | function IGCM_sys_GetBuffer { |
---|
1315 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
1316 | |
---|
1317 | typeset DEST RET buf_liste ifile target file_work |
---|
1318 | |
---|
1319 | if ( $DEBUG_sys ) ; then |
---|
1320 | echo "IGCM_sys_GetBuffer :" $@ |
---|
1321 | fi |
---|
1322 | if [ $DRYRUN -le 2 ]; then |
---|
1323 | if [ X${1} = X'/l' ] ; then |
---|
1324 | # test if the first file is present in the old computation : |
---|
1325 | eval set +A buf_liste \${${2}} |
---|
1326 | else |
---|
1327 | eval set +A buf_liste ${1} |
---|
1328 | fi |
---|
1329 | eval DEST=\${${#}} |
---|
1330 | |
---|
1331 | #USUAL WAY |
---|
1332 | if [ X${1} = X'/l' ] ; then |
---|
1333 | (( RET=0 )) |
---|
1334 | for target in ${buf_liste[*]} ; do |
---|
1335 | local_file=$( basename ${target} ) |
---|
1336 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
1337 | (( RET = RET + $? )) |
---|
1338 | done |
---|
1339 | else |
---|
1340 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
1341 | RET=$? |
---|
1342 | fi |
---|
1343 | |
---|
1344 | if [ ${RET} -gt 0 ] ; then |
---|
1345 | echo "IGCM_sys_GetBuffer : copy error." |
---|
1346 | cat out_rsync |
---|
1347 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
1348 | else |
---|
1349 | \rm out_rsync |
---|
1350 | fi |
---|
1351 | else |
---|
1352 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
1353 | fi |
---|
1354 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
1355 | } |
---|
1356 | |
---|
1357 | #D-#================================================== |
---|
1358 | #D-function IGCM_sys_GetDate_FichWork |
---|
1359 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
1360 | #D-* Examples: |
---|
1361 | #D- |
---|
1362 | function IGCM_sys_GetDate_FichWork { |
---|
1363 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
1364 | if ( $DEBUG_sys ) ; then |
---|
1365 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
1366 | fi |
---|
1367 | typeset dateF |
---|
1368 | set +A dateF -- $( IGCM_sys_RshMaster "ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1}" ) |
---|
1369 | eval ${2}=${dateF[5]} |
---|
1370 | |
---|
1371 | # donne la date filesys d'un fichier sur la machine work |
---|
1372 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
1373 | } |
---|
1374 | |
---|
1375 | #D-#================================================== |
---|
1376 | #D-function IGCM_sys_GetDate_FichArchive |
---|
1377 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
1378 | #D-* Examples: |
---|
1379 | #D- |
---|
1380 | function IGCM_sys_GetDate_FichArchive { |
---|
1381 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
1382 | if ( $DEBUG_sys ) ; then |
---|
1383 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
1384 | fi |
---|
1385 | typeset dateF |
---|
1386 | set +A dateF -- $( IGCM_sys_RshMaster "ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1}" ) |
---|
1387 | eval ${2}=${dateF[5]} |
---|
1388 | |
---|
1389 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
1390 | } |
---|
1391 | |
---|
1392 | ############################################################## |
---|
1393 | # REBUILD OPERATOR |
---|
1394 | |
---|
1395 | function IGCM_sys_rebuild { |
---|
1396 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
1397 | if ( $DEBUG_sys ) ; then |
---|
1398 | echo "IGCM_sys_rebuild :" $@ |
---|
1399 | fi |
---|
1400 | /home/cont003/p86ipsl/SX8/bin/rebuild -f -o $@ |
---|
1401 | if [ $? -gt 0 ] ; then |
---|
1402 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
1403 | IGCM_debug_Exit "rebuild" |
---|
1404 | fi |
---|
1405 | |
---|
1406 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
1407 | } |
---|
1408 | |
---|
1409 | ############################################################ |
---|
1410 | # Activate Running Environnment Variables |
---|
1411 | |
---|
1412 | function IGCM_sys_activ_variables { |
---|
1413 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
1414 | if ( $DEBUG_sys ) ; then |
---|
1415 | echo "IGCM_sys_activ_variables" |
---|
1416 | fi |
---|
1417 | |
---|
1418 | # -------------------------------------------------------------------- |
---|
1419 | #D- MPI specifications |
---|
1420 | # -------------------------------------------------------------------- |
---|
1421 | |
---|
1422 | #D-- MPISUSPEND |
---|
1423 | export MPISUSPEND=${MPISUSPEND:=OFF} |
---|
1424 | |
---|
1425 | #D-- MPIPROGINF #other choices : ALL_DETAIL2 |
---|
1426 | export MPIPROGINF=ALL |
---|
1427 | #D- activate ftrace (with -ftrace) |
---|
1428 | export F_FTRACE=YES |
---|
1429 | #D- communication information (with -ftrace) |
---|
1430 | export MPICOMMINF=DETAIL |
---|
1431 | |
---|
1432 | # -------------------------------------------------------------------- |
---|
1433 | #D- Other specifications |
---|
1434 | # -------------------------------------------------------------------- |
---|
1435 | |
---|
1436 | #D- max number of character/line in output job |
---|
1437 | export F_SYSLEN=5000 |
---|
1438 | #D- number of error that can be admitted on the NEC |
---|
1439 | export F_ERRCNT=0 |
---|
1440 | #D- global performance |
---|
1441 | export F_PROGINF=DETAIL |
---|
1442 | |
---|
1443 | #D- I/O performance (FORTRAN I/O only not netCDF) |
---|
1444 | export F_FILEINF=${F_FILEINF:=NO} |
---|
1445 | #D- netCDF I/O performance |
---|
1446 | export NC_FILEINF=${NC_FILEINF:=NO} |
---|
1447 | |
---|
1448 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
1449 | } |
---|
1450 | |
---|
1451 | ############################################################ |
---|
1452 | # Desactivate Running Environnment Variables |
---|
1453 | |
---|
1454 | function IGCM_sys_desactiv_variables { |
---|
1455 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
1456 | if ( $DEBUG_sys ) ; then |
---|
1457 | echo "IGCM_sys_desactiv_variables" |
---|
1458 | fi |
---|
1459 | # -------------------------------------------------------------------- |
---|
1460 | #D- MPI specifications |
---|
1461 | # -------------------------------------------------------------------- |
---|
1462 | |
---|
1463 | #D-- MPIPROGINF |
---|
1464 | export MPIPROGINF=NO |
---|
1465 | |
---|
1466 | # -------------------------------------------------------------------- |
---|
1467 | #D- Other specifications |
---|
1468 | # -------------------------------------------------------------------- |
---|
1469 | |
---|
1470 | #D- global performance |
---|
1471 | export F_PROGINF=NO |
---|
1472 | |
---|
1473 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
1474 | } |
---|
1475 | |
---|
1476 | ############################################################ |
---|
1477 | # Build MPI/OMP scripts |
---|
1478 | function IGCM_sys_build_execution_scripts |
---|
1479 | { |
---|
1480 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
1481 | if ( $DEBUG_sys ) ; then |
---|
1482 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
1483 | fi |
---|
1484 | |
---|
1485 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
1486 | |
---|
1487 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
1488 | IGCM_debug_Exit "IGCM_sys_mercurex9 build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
1489 | fi |
---|
1490 | |
---|
1491 | if ( ${OK_PARA_MPMD} ) ; then |
---|
1492 | |
---|
1493 | if [ -f run_file ] ; then |
---|
1494 | IGCM_sys_Rm -f run_file |
---|
1495 | fi |
---|
1496 | touch run_file |
---|
1497 | |
---|
1498 | if ( ${OK_PARA_OMP} ) ; then |
---|
1499 | IGCM_debug_Print 2 "Error in config.card on SX9 : OpenMP not available" |
---|
1500 | exit 1 |
---|
1501 | else |
---|
1502 | # OLD : |
---|
1503 | #PBS -v BATCH_NUM_PROC_TOT=4 |
---|
1504 | #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} |
---|
1505 | echo "Job_${config_UserChoices_JobName} includes BATCH_NUM_PROC_TOT = \c" |
---|
1506 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" |
---|
1507 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" ) |
---|
1508 | NbProc_Job=${NbProc_Job:=0} |
---|
1509 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
1510 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no BATCH_NUM_PROC_TOT defined with MPI only run." |
---|
1511 | exit 1 |
---|
1512 | fi |
---|
1513 | fi |
---|
1514 | |
---|
1515 | # run_file construction |
---|
1516 | |
---|
1517 | # Then first loop on the components for the coupler ie oasis |
---|
1518 | |
---|
1519 | ### the coupler ie oasis must be the first one |
---|
1520 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1521 | |
---|
1522 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1523 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1524 | |
---|
1525 | # for CPL component only |
---|
1526 | if [ "X${comp}" = "XCPL" ] ; then |
---|
1527 | |
---|
1528 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
1529 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1530 | |
---|
1531 | if ( ${OK_PARA_MPI} ) ; then |
---|
1532 | echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file |
---|
1533 | fi |
---|
1534 | fi |
---|
1535 | done |
---|
1536 | |
---|
1537 | # Then second loop on the components |
---|
1538 | |
---|
1539 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1540 | |
---|
1541 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1542 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1543 | |
---|
1544 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
1545 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
1546 | |
---|
1547 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
1548 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1549 | |
---|
1550 | if ( ${OK_PARA_MPI} ) ; then |
---|
1551 | echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file |
---|
1552 | fi |
---|
1553 | fi |
---|
1554 | done |
---|
1555 | |
---|
1556 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
1557 | |
---|
1558 | IGCM_sys_Chmod u+x run_file |
---|
1559 | if ( $DEBUG_sys ) ; then |
---|
1560 | echo "run_file contains : " |
---|
1561 | cat run_file |
---|
1562 | fi |
---|
1563 | |
---|
1564 | else # Only one executable. launch it. |
---|
1565 | |
---|
1566 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1567 | |
---|
1568 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1569 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1570 | |
---|
1571 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
1572 | EXECUTION="time mpirun -np ${BATCH_NUM_PROC_TOT} ./${ExeNameOut}" |
---|
1573 | fi |
---|
1574 | done |
---|
1575 | |
---|
1576 | fi |
---|
1577 | |
---|
1578 | IGCM_debug_Print 1 "sys mercurex9 : execution command is " |
---|
1579 | IGCM_debug_Print 1 "$EXECUTION" |
---|
1580 | |
---|
1581 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
1582 | |
---|
1583 | } |
---|
1584 | |
---|
1585 | function IGCM_sys_build_run_file { |
---|
1586 | |
---|
1587 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
1588 | |
---|
1589 | } |
---|
1590 | |
---|
1591 | ############################################################ |
---|
1592 | # Check of space available on temporary filesytems |
---|
1593 | function IGCM_sys_check_quota { |
---|
1594 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
1595 | |
---|
1596 | if ( $DEBUG_sys ) ; then |
---|
1597 | echo "IGCM_sys_check_quota " |
---|
1598 | fi |
---|
1599 | # Limit of quota (in %) |
---|
1600 | limit_quota=90 |
---|
1601 | |
---|
1602 | # Check of the volume (use of RshMaster waiting for ccc_quota command available on SX9 nodes) |
---|
1603 | # volume_quota=$( IGCM_sys_RshMaster "/applications/ccc-tools/ccc_quota | grep ' scratch' | awk '{print \$2}'" ) |
---|
1604 | # volume_avail=$( IGCM_sys_RshMaster "/applications/ccc-tools/ccc_quota | grep ' scratch' | awk '{print \$3}'" ) |
---|
1605 | |
---|
1606 | volume_quota=$(quota -h | grep 'scratch' | awk '{print $2}') |
---|
1607 | volume_avail=$(quota -h | grep 'scratch' | awk '{print $3}') |
---|
1608 | |
---|
1609 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
1610 | |
---|
1611 | unit_quota=$( echo $volume_quota | awk '{print(substr($0, length($0), length($0)))}' ) |
---|
1612 | unit_avail=$( echo $volume_avail | awk '{print(substr($0, length($0), length($0)))}' ) |
---|
1613 | |
---|
1614 | temp_avail=${volume_avail%%${unit_avail}*} |
---|
1615 | temp_quota=${volume_quota%%${unit_quota}*} |
---|
1616 | |
---|
1617 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
1618 | |
---|
1619 | # Convertion |
---|
1620 | if [ ${unit_avail} = "T" ] ; then |
---|
1621 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
1622 | elif [ ${unit_avail} = "G" ] ; then |
---|
1623 | (( temp_avail = temp_avail * 1000000000 )) |
---|
1624 | elif [ ${unit_avail} = "M" ] ; then |
---|
1625 | (( temp_avail = temp_avail * 1000000 )) |
---|
1626 | elif [ ${unit_avail} = "k" ] ; then |
---|
1627 | (( temp_avail = temp_avail * 1000 )) |
---|
1628 | else |
---|
1629 | (( temp_avail = volume_avail )) |
---|
1630 | fi |
---|
1631 | if [ ${unit_quota} = "T" ] ; then |
---|
1632 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
1633 | elif [ ${unit_quota} = "G" ] ; then |
---|
1634 | (( temp_quota = temp_quota * 1000000000 )) |
---|
1635 | elif [ ${unit_quota} = "M" ] ; then |
---|
1636 | (( temp_quota = temp_quota * 1000000 )) |
---|
1637 | elif [ ${unit_quota} = "k" ] ; then |
---|
1638 | (( temp_quota = temp_quota * 1000 )) |
---|
1639 | else |
---|
1640 | (( temp_quota = volume_quota )) |
---|
1641 | fi |
---|
1642 | fi |
---|
1643 | |
---|
1644 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
1645 | # echo "volume ratio is " $quota_volume |
---|
1646 | |
---|
1647 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
1648 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
1649 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
1650 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
1651 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
1652 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
1653 | IGCM_debug_Verif_Exit |
---|
1654 | fi |
---|
1655 | |
---|
1656 | fi |
---|
1657 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
1658 | } |
---|