[192] | 1 | #!/bin/ksh |
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[99] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[99] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[719] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[99] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[192] | 21 | #D-LibIGCM_sys for Mercure SX9 |
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[99] | 22 | #D-#================================================== |
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| 23 | #D- |
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[719] | 24 | #D- This ksh library if a layer under some usefull |
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[99] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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[111] | 34 | # gawk specific location on SX9 |
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| 35 | export PATH=/applications/gawk-3.0.4/bin:${PATH} |
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| 36 | |
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[99] | 37 | #==================================================== |
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| 38 | # set DEBUG_sys to true to output calls of function |
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| 39 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 40 | |
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| 41 | #==================================================== |
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| 42 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 43 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 44 | |
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| 45 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 46 | # ------------------------------------------------------------------------------------- |
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| 47 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 48 | # | | Cp/Exe param files | | Chmod | | |
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| 49 | # | | Qsub | | | | |
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| 50 | # ------------------------------------------------------------------------------------- |
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| 51 | # | 0 | yes | yes | yes | yes | |
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| 52 | # ------------------------------------------------------------------------------------- |
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| 53 | # | 1 | yes | yes | yes | no | |
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| 54 | # ------------------------------------------------------------------------------------- |
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| 55 | # | 2 | yes | yes | no | no | |
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| 56 | # ------------------------------------------------------------------------------------- |
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| 57 | # | 3 | yes | no | no | no | |
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| 58 | # ------------------------------------------------------------------------------------- |
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| 59 | |
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| 60 | #===================================================== |
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| 61 | # Global Variables : |
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| 62 | #===================================================== |
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| 63 | # Language : "fr" or "en" |
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| 64 | typeset -r MYLANG="fr" |
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| 65 | |
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| 66 | #===================================================== |
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[192] | 67 | # Host and user names |
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| 68 | # $hostname ou hostname |
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[228] | 69 | typeset HOST=${HOST:=$( hostname )} |
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[99] | 70 | # $username ou whoami |
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[228] | 71 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[99] | 72 | # $hostname of the MASTER job |
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| 73 | typeset -r MASTER=mercure |
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| 74 | |
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| 75 | #D- |
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| 76 | #D-#================================================== |
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| 77 | #D-Program used in libIGCM |
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| 78 | #D-#================================================== |
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| 79 | |
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[742] | 80 | # Submit command |
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| 81 | typeset SUBMIT=${SUBMIT:=qsub} |
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[99] | 82 | # rsync with path |
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| 83 | typeset -r RSYNC=/home/cont003/p86denv/SX_RSYNC/bin/rsync |
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| 84 | # RSYNC_opt args to rsync |
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[192] | 85 | typeset -r RSYNC_opt="-va" |
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[99] | 86 | # ie storage filesystem |
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[540] | 87 | typeset -r STOREHOST=${MASTER} |
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[99] | 88 | |
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| 89 | #==================================================== |
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| 90 | # Host specific DIRECTORIES |
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| 91 | #==================================================== |
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| 92 | |
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[257] | 93 | # ============ CESIUM START ============ # |
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| 94 | |
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[99] | 95 | #==================================================== |
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[192] | 96 | #- Mirror libIGCM from mercure to cesium if needed |
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[587] | 97 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 98 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 99 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 100 | #else |
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| 101 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 102 | #fi |
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[192] | 103 | |
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| 104 | #==================================================== |
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[99] | 105 | #- libIGCM_POST |
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[587] | 106 | #if ( ${MirrorlibIGCM} ) ; then |
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| 107 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 108 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 109 | #else |
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| 110 | # typeset -r libIGCM_POST=${libIGCM} |
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| 111 | #fi |
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[99] | 112 | |
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[257] | 113 | # ============ CESIUM END ============ # |
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| 114 | |
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[99] | 115 | #==================================================== |
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[717] | 116 | #- MirrorlibIGCM for frontend |
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[587] | 117 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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[257] | 118 | |
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| 119 | #==================================================== |
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[717] | 120 | #- libIGCM_POST for frontend |
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[587] | 121 | typeset -r libIGCM_POST=${libIGCM} |
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[257] | 122 | |
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| 123 | #==================================================== |
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[587] | 124 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 125 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 126 | |
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| 127 | #==================================================== |
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| 128 | #- SUBMIT_DIR : submission dir |
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| 129 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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| 130 | |
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| 131 | #==================================================== |
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[99] | 132 | #- IN |
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[545] | 133 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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[717] | 134 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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[99] | 135 | |
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| 136 | #==================================================== |
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[725] | 137 | #- ARCHIVE (dedicated to large files) |
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| 138 | typeset ARCHIVE=${CCCSTOREDIR} |
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| 139 | |
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| 140 | #==================================================== |
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| 141 | #- STORAGE (dedicated to small/medium files) |
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| 142 | typeset STORAGE=${CCCWORKDIR} |
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| 143 | |
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| 144 | #==================================================== |
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[544] | 145 | #- R_OUT |
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[725] | 146 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[99] | 147 | |
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| 148 | #==================================================== |
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[587] | 149 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[725] | 150 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[587] | 151 | |
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| 152 | #==================================================== |
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[544] | 153 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 154 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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| 155 | |
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| 156 | #==================================================== |
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[99] | 157 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 158 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${LOCALTMPDIR}} |
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| 159 | |
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| 160 | #==================================================== |
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| 161 | #- HOST_MPIRUN_COMMAND |
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| 162 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} |
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| 163 | |
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| 164 | #==================================================== |
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| 165 | #- Max number of arguments passed to nco operator or demigration command |
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| 166 | UNIX_MAX_LIMIT=360 |
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| 167 | |
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[616] | 168 | #==================================================== |
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| 169 | #- set PackDefault true on NEC SX9 |
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| 170 | PackDefault=true |
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| 171 | |
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| 172 | #==================================================== |
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| 173 | #- Default number of MPI task for IPSL coupled model |
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| 174 | #- required for backward compatibility |
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| 175 | #- |
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| 176 | DEFAULT_NUM_PROC_OCE=1 |
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| 177 | DEFAULT_NUM_PROC_CPL=1 |
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| 178 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) |
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| 179 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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| 180 | |
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[99] | 181 | #D-#================================================== |
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[725] | 182 | #D-function IGCM_sys_ChangeArchive |
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| 183 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
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| 184 | #D-* Examples: |
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| 185 | #D- |
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| 186 | function IGCM_sys_ChangeArchive { |
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| 187 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
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| 188 | |
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[743] | 189 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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| 190 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[725] | 191 | |
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| 192 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
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| 193 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
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| 194 | |
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| 195 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
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| 196 | } |
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| 197 | |
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| 198 | #D-#================================================== |
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[531] | 199 | #D-function IGCM_sys_RshMaster |
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| 200 | #D-* Purpose: Connection to frontend machine. |
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| 201 | #D-* Examples: |
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| 202 | #D- |
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| 203 | function IGCM_sys_RshMaster { |
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[544] | 204 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 205 | ssh -t ${MASTER} /bin/ksh <<-EOF |
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| 206 | export libIGCM=${libIGCM} |
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| 207 | export DEBUG_debug=${DEBUG_debug} |
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| 208 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 209 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 210 | ${@} |
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[531] | 211 | EOF |
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[544] | 212 | if [ $? -gt 0 ] ; then |
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| 213 | echo "IGCM_sys_RshMaster : erreur." |
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| 214 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 215 | fi |
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| 216 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[531] | 217 | } |
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| 218 | |
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| 219 | #D-#================================================== |
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[99] | 220 | #D-function IGCM_sys_RshArchive |
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| 221 | #D-* Purpose: Archive rsh command |
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| 222 | #D-* Examples: |
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| 223 | #D- |
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| 224 | function IGCM_sys_RshArchive { |
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[544] | 225 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 226 | /bin/ksh <<-EOF |
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| 227 | ${@} |
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[99] | 228 | EOF |
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[544] | 229 | if [ $? -gt 0 ] ; then |
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| 230 | echo "IGCM_sys_RshArchive : erreur." |
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| 231 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 232 | fi |
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| 233 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[99] | 234 | } |
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| 235 | |
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| 236 | #D-#================================================== |
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| 237 | #D-function IGCM_sys_RshPost |
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| 238 | #D-* Purpose: Post-process rsh command |
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| 239 | #D-* Examples: |
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| 240 | #D- |
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| 241 | function IGCM_sys_RshPost { |
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[544] | 242 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 243 | if ( $DEBUG_sys ) ; then |
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| 244 | echo "IGCM_sys_RshPost :" $@ |
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| 245 | fi |
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[167] | 246 | |
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[544] | 247 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 248 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 249 | # keep standard input (stdin) for the loop onto temporary file |
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| 250 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 251 | |
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| 252 | # ============ FRONTEND START ============ # |
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| 253 | |
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[582] | 254 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 255 | if [ $? -gt 0 ] ; then |
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| 256 | echo "IGCM_sys_RshPost : erreur." |
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| 257 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 258 | fi |
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[717] | 259 | # delete temporary file |
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[582] | 260 | \rm tmp_IGCM_sys_RshPost_$$ |
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[544] | 261 | |
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| 262 | # ============ FRONTEND END ============ # |
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| 263 | |
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[257] | 264 | # ============ CESIUM START ============ # |
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[582] | 265 | # typeset NB_ESSAI DELAI status i |
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| 266 | # # number of tentative |
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| 267 | # NB_ESSAI=10 |
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| 268 | # # time delay between tentative |
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| 269 | # DELAI=10 |
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| 270 | # (( i = 0 )) |
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| 271 | # while [ $i -lt $NB_ESSAI ] ; do |
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| 272 | # ssh -t mercure01 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 273 | # status=$? |
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| 274 | # if [ ${status} -gt 0 ]; then |
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| 275 | # IGCM_debug_Print 2 "IGCM_sys_RshPost : ssh failed ${i}/${NB_ESSAI}" |
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| 276 | # IGCM_debug_Print 2 "IGCM_sys_RshPost : sleep ${DELAI} seconds and try again." |
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| 277 | # sleep $DELAI |
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| 278 | # else |
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| 279 | # break |
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| 280 | # fi |
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| 281 | # (( i = i + 1 )) |
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| 282 | # done |
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| 283 | # # delete temporary file |
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| 284 | # /bin/rm tmp_IGCM_sys_RshPost_$$ |
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[257] | 285 | # ============ CESIUM END ============ # |
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[170] | 286 | |
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[544] | 287 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[99] | 288 | } |
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| 289 | |
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| 290 | #D-#================================================== |
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[153] | 291 | #D-function IGCM_sys_SendMail |
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| 292 | #D-* Purpose: Send mail when simulation is over |
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| 293 | #D-* Examples: |
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| 294 | #D- |
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| 295 | function IGCM_sys_SendMail { |
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[544] | 296 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 297 | if ( $DEBUG_sys ) ; then |
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| 298 | echo "IGCM_sys_SendMail :" $@ |
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| 299 | fi |
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[153] | 300 | |
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[544] | 301 | if ( ${ExitFlag} ) ; then |
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| 302 | status=failed |
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| 303 | else |
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| 304 | status=completed |
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| 305 | fi |
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[717] | 306 | |
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[544] | 307 | cat << END_MAIL > job_end.mail |
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[717] | 308 | Dear ${LOGIN}, |
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[437] | 309 | |
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[452] | 310 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[153] | 311 | Job started : ${DateBegin} |
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| 312 | Job ended : ${DateEnd} |
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[434] | 313 | Output files are available in ${R_SAVE} |
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[616] | 314 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 315 | Pre-packed files are temporarily available in ${R_BUFR} |
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[452] | 316 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[153] | 317 | END_MAIL |
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| 318 | |
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[544] | 319 | if [ X"${config_UserChoices_MailName}" != X ] ; then |
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| 320 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 321 | elif [ -f ~/.forward ] ; then |
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| 322 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 323 | else |
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| 324 | mailx -s "${config_UserChoices_JobName} ${status}" ${LOGIN} < job_end.mail |
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| 325 | fi |
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[153] | 326 | |
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[544] | 327 | if [ $? -gt 0 ] ; then |
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| 328 | echo "IGCM_sys_SendMail : erreur." |
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| 329 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 330 | fi |
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| 331 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[153] | 332 | } |
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| 333 | |
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| 334 | #D-#================================================== |
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[99] | 335 | #D-function IGCM_sys_Mkdir |
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| 336 | #D-* Purpose: Master locale mkdir command |
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| 337 | #D-* Examples: |
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| 338 | #D- |
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| 339 | function IGCM_sys_Mkdir { |
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[544] | 340 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 341 | if ( $DEBUG_sys ) ; then |
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| 342 | echo "IGCM_sys_Mkdir :" $@ |
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| 343 | fi |
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[742] | 344 | |
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| 345 | typeset NB_ESSAI DELAI status i |
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| 346 | # number of tentative |
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| 347 | NB_ESSAI=3 |
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| 348 | # time delay between tentative |
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| 349 | DELAI=2 |
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| 350 | |
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[544] | 351 | if [ ! -d ${1} ]; then |
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[742] | 352 | i=0 |
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| 353 | while [ $i -lt $NB_ESSAI ] ; do |
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| 354 | \mkdir -p $1 |
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| 355 | status=$? |
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| 356 | if [ ${status} -gt 0 ] ; then |
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| 357 | IGCM_debug_Print 2 "IGCM_sys_Mkdir : mkdir failed error code ${status} ${i}/${NB_ESSAI}" |
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| 358 | IGCM_debug_Print 2 "IGCM_sys_Mkdir : sleep ${DELAI} seconds and try again." |
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| 359 | sleep $DELAI |
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| 360 | else |
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| 361 | break |
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| 362 | fi |
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| 363 | (( i = i + 1 )) |
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| 364 | done |
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[544] | 365 | fi |
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| 366 | # vérification : |
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| 367 | if [ ! -d ${1} ] ; then |
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| 368 | echo "IGCM_sys_Mkdir : erreur." |
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| 369 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 370 | fi |
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| 371 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[99] | 372 | } |
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| 373 | |
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| 374 | #D-#================================================== |
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| 375 | #D-function IGCM_sys_MkdirArchive |
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| 376 | #D-* Purpose: Mkdir on Archive |
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| 377 | #D-* Examples: |
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| 378 | #D- |
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| 379 | function IGCM_sys_MkdirArchive { |
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[544] | 380 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 381 | if ( $DEBUG_sys ) ; then |
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| 382 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 383 | fi |
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[742] | 384 | |
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| 385 | typeset NB_ESSAI DELAI status i |
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| 386 | # number of tentative |
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| 387 | NB_ESSAI=3 |
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| 388 | # time delay between tentative |
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| 389 | DELAI=2 |
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| 390 | |
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[717] | 391 | if [ ! -d ${1} ]; then |
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[742] | 392 | i=0 |
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| 393 | while [ $i -lt $NB_ESSAI ] ; do |
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| 394 | \mkdir -p $1 |
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| 395 | status=$? |
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| 396 | if [ ${status} -gt 0 ] ; then |
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| 397 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status} ${i}/${NB_ESSAI}" |
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| 398 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : sleep ${DELAI} seconds and try again." |
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| 399 | sleep $DELAI |
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| 400 | else |
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| 401 | break |
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| 402 | fi |
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| 403 | (( i = i + 1 )) |
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| 404 | done |
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[544] | 405 | fi |
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[742] | 406 | |
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| 407 | # vérification : |
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| 408 | if [ ! -d ${1} ] ; then |
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| 409 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 410 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 411 | fi |
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[544] | 412 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[99] | 413 | } |
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| 414 | |
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| 415 | #D-#================================================== |
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| 416 | #D-function IGCM_sys_MkdirWork |
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| 417 | #D-* Purpose: Mkdir on Work |
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| 418 | #D-* Examples: |
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| 419 | #D- |
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| 420 | function IGCM_sys_MkdirWork { |
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[544] | 421 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 422 | if ( $DEBUG_sys ) ; then |
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| 423 | echo "IGCM_sys_MkdirWork :" $@ |
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| 424 | fi |
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| 425 | #- creation de repertoire sur le serveur fichier |
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[717] | 426 | if [ ! -d ${1} ]; then |
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[544] | 427 | \mkdir -p $1 |
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| 428 | if [ $? -gt 0 ] ; then |
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| 429 | echo "IGCM_sys_MkdirWork : erreur." |
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| 430 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[99] | 431 | fi |
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[544] | 432 | fi |
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| 433 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[99] | 434 | } |
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| 435 | |
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| 436 | #D-#================================================== |
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| 437 | #D-function IGCM_sys_Cd |
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| 438 | #D-* Purpose: master cd command |
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| 439 | #D-* Examples: |
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| 440 | #D- |
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| 441 | function IGCM_sys_Cd { |
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[544] | 442 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 443 | if ( $DEBUG_sys ) ; then |
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| 444 | echo "IGCM_sys_Cd :" $@ |
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| 445 | fi |
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| 446 | \cd $1 |
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| 447 | if [ $? -gt 0 ] ; then |
---|
| 448 | echo "IGCM_sys_Cd : erreur." |
---|
| 449 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 450 | fi |
---|
| 451 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[99] | 452 | } |
---|
| 453 | |
---|
| 454 | #D-#================================================== |
---|
| 455 | #D-function IGCM_sys_Chmod |
---|
| 456 | #D-* Purpose: Chmod |
---|
| 457 | #D-* Examples: |
---|
| 458 | #D- |
---|
| 459 | function IGCM_sys_Chmod { |
---|
[544] | 460 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
---|
| 461 | if ( $DEBUG_sys ) ; then |
---|
| 462 | echo "IGCM_sys_Chmod :" $@ |
---|
| 463 | fi |
---|
| 464 | if [ $DRYRUN -le 1 ]; then |
---|
| 465 | \chmod $@ |
---|
| 466 | if [ $? -gt 0 ] ; then |
---|
| 467 | echo "IGCM_sys_Chmod : erreur." |
---|
| 468 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[99] | 469 | fi |
---|
[544] | 470 | else |
---|
| 471 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 472 | fi |
---|
| 473 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[99] | 474 | } |
---|
| 475 | |
---|
| 476 | #D-#================================================== |
---|
| 477 | #D-function IGCM_sys_FileSize |
---|
[544] | 478 | #D-* Purpose: Filesize |
---|
[99] | 479 | #D-* Examples: |
---|
| 480 | #D- |
---|
| 481 | function IGCM_sys_FileSize { |
---|
[544] | 482 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[99] | 483 | |
---|
[544] | 484 | typeset sizeF |
---|
| 485 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 486 | if [ $? -gt 0 ] ; then |
---|
| 487 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 488 | fi |
---|
| 489 | eval ${2}=${sizeF[4]} |
---|
[99] | 490 | |
---|
[544] | 491 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[99] | 492 | } |
---|
| 493 | |
---|
| 494 | #D-#================================================== |
---|
| 495 | #D-function IGCM_sys_TestDir |
---|
| 496 | #D-* Purpose: Test Directory that must exists |
---|
| 497 | #D-* Examples: |
---|
| 498 | #D- |
---|
| 499 | function IGCM_sys_TestDir { |
---|
[544] | 500 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 501 | if ( $DEBUG_sys ) ; then |
---|
| 502 | echo "IGCM_sys_TestDir :" $@ |
---|
| 503 | fi |
---|
| 504 | typeset ExistFlag |
---|
| 505 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 506 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[99] | 507 | |
---|
[544] | 508 | return ${ExistFlag} |
---|
[99] | 509 | } |
---|
| 510 | |
---|
| 511 | #D-#================================================== |
---|
| 512 | #D-function IGCM_sys_TestDirArchive |
---|
| 513 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 514 | #D-* Examples: |
---|
| 515 | #D- |
---|
| 516 | function IGCM_sys_TestDirArchive { |
---|
[544] | 517 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 518 | if ( $DEBUG_sys ) ; then |
---|
| 519 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 520 | fi |
---|
| 521 | typeset ExistFlag |
---|
| 522 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 523 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[99] | 524 | |
---|
[544] | 525 | return ${ExistFlag} |
---|
[99] | 526 | } |
---|
| 527 | |
---|
| 528 | #D-#================================================== |
---|
[548] | 529 | #D-function IGCM_sys_IsFileArchived |
---|
| 530 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 531 | #D-* Examples: |
---|
| 532 | #D- |
---|
| 533 | function IGCM_sys_IsFileArchived { |
---|
| 534 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 535 | if ( $DEBUG_sys ) ; then |
---|
| 536 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 537 | fi |
---|
| 538 | typeset IsArchivedFlag |
---|
[618] | 539 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
[548] | 540 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 541 | |
---|
| 542 | return ${IsArchivedFlag} |
---|
| 543 | } |
---|
| 544 | |
---|
| 545 | #D-#================================================== |
---|
[99] | 546 | #D-function IGCM_sys_TestFileArchive |
---|
| 547 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 548 | #D-* Examples: |
---|
| 549 | #D- |
---|
| 550 | function IGCM_sys_TestFileArchive { |
---|
[544] | 551 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 552 | typeset ExistFlag |
---|
| 553 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 554 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[99] | 555 | |
---|
[544] | 556 | return ${ExistFlag} |
---|
[99] | 557 | } |
---|
| 558 | |
---|
| 559 | #D-#================================================== |
---|
[544] | 560 | #D-function IGCM_sys_TestFileBuffer |
---|
| 561 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 562 | #D-* Examples: |
---|
| 563 | #D- |
---|
| 564 | function IGCM_sys_TestFileBuffer { |
---|
| 565 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 566 | typeset ExistFlag |
---|
| 567 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 568 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 569 | |
---|
| 570 | return ${ExistFlag} |
---|
| 571 | } |
---|
| 572 | |
---|
| 573 | #D-#================================================== |
---|
[99] | 574 | #D-function IGCM_sys_CountFileArchive |
---|
| 575 | #D-* Purpose: Count files on Archive filesystem |
---|
| 576 | #D-* Examples: |
---|
| 577 | #D- |
---|
| 578 | function IGCM_sys_CountFileArchive { |
---|
[544] | 579 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 580 | ls ${@} 2>/dev/null | wc -l |
---|
| 581 | if [ $? -gt 0 ] ; then |
---|
| 582 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 583 | fi |
---|
| 584 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[99] | 585 | } |
---|
| 586 | |
---|
| 587 | #D-#================================================== |
---|
[544] | 588 | #D-function IGCM_sys_CountFileBuffer |
---|
| 589 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 590 | #D-* Examples: |
---|
| 591 | #D- |
---|
| 592 | function IGCM_sys_CountFileBuffer { |
---|
| 593 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 594 | ls ${@} 2>/dev/null | wc -l |
---|
| 595 | if [ $? -gt 0 ] ; then |
---|
| 596 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 597 | fi |
---|
| 598 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 599 | } |
---|
| 600 | |
---|
| 601 | #D-#================================================== |
---|
[99] | 602 | #D-function IGCM_sys_Tree |
---|
| 603 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 604 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 605 | #D- |
---|
| 606 | function IGCM_sys_Tree { |
---|
[544] | 607 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 608 | if ( $DEBUG_sys ) ; then |
---|
| 609 | echo "IGCM_sys_Tree :" $@ |
---|
| 610 | fi |
---|
[99] | 611 | |
---|
[544] | 612 | \ls -lR ${@} |
---|
[99] | 613 | |
---|
[544] | 614 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[99] | 615 | } |
---|
| 616 | |
---|
| 617 | #D-#================================================== |
---|
| 618 | #D-function IGCM_sys_Tar |
---|
[544] | 619 | #D-* Purpose: master tar command |
---|
[99] | 620 | #D-* Examples: |
---|
| 621 | #D- |
---|
| 622 | function IGCM_sys_Tar { |
---|
[544] | 623 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 624 | if ( $DEBUG_sys ) ; then |
---|
| 625 | echo "IGCM_sys_Tar :" $@ |
---|
| 626 | fi |
---|
[742] | 627 | IGCM_sys_RshMaster "\tar $@" |
---|
[544] | 628 | if [ $? -gt 0 ] ; then |
---|
| 629 | echo "IGCM_sys_Tar : erreur." |
---|
| 630 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 631 | fi |
---|
| 632 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[99] | 633 | } |
---|
| 634 | |
---|
| 635 | #D-#================================================== |
---|
| 636 | #D-function IGCM_sys_UnTar |
---|
| 637 | #D-* Purpose: master un-tar command |
---|
| 638 | #D-* Examples: |
---|
| 639 | #D- |
---|
| 640 | function IGCM_sys_UnTar { |
---|
[544] | 641 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 642 | if ( $DEBUG_sys ) ; then |
---|
| 643 | echo "IGCM_sys_UnTar :" $@ |
---|
| 644 | fi |
---|
| 645 | \tar xvf $1 |
---|
| 646 | if [ $? -gt 0 ] ; then |
---|
| 647 | echo "IGCM_sys_UnTar : erreur." |
---|
| 648 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 649 | fi |
---|
| 650 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[99] | 651 | } |
---|
| 652 | |
---|
| 653 | #D-#================================================== |
---|
| 654 | #D-function IGCM_sys_Qsub |
---|
| 655 | #D-* Purpose: Qsub new job |
---|
| 656 | #D-* Examples: |
---|
| 657 | #D- |
---|
| 658 | function IGCM_sys_Qsub { |
---|
[544] | 659 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 660 | if ( $DEBUG_sys ) ; then |
---|
| 661 | echo "IGCM_sys_Qsub :" $@ |
---|
| 662 | fi |
---|
| 663 | /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 664 | if [ $? -gt 0 ] ; then |
---|
| 665 | echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." |
---|
| 666 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 667 | fi |
---|
| 668 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[99] | 669 | } |
---|
| 670 | |
---|
| 671 | #D-#================================================== |
---|
| 672 | #D-function IGCM_sys_QsubPost |
---|
| 673 | #D-* Purpose: Qsub new job on scalaire |
---|
| 674 | #D-* Examples: |
---|
| 675 | #D- |
---|
| 676 | function IGCM_sys_QsubPost { |
---|
[544] | 677 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 678 | if ( $DEBUG_sys ) ; then |
---|
| 679 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 680 | fi |
---|
| 681 | |
---|
| 682 | # ============ FRONTEND START ============ # |
---|
| 683 | |
---|
[582] | 684 | /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} |
---|
[544] | 685 | |
---|
| 686 | # ============ FRONTEND END ============ # |
---|
| 687 | |
---|
| 688 | # ============ CESIUM START ============ # |
---|
[582] | 689 | # typeset NB_ESSAI DELAI status i |
---|
| 690 | # # number of tentative |
---|
| 691 | # NB_ESSAI=10 |
---|
| 692 | # # time delay between tentative |
---|
| 693 | # DELAI=10 |
---|
| 694 | # (( i = 0 )) |
---|
| 695 | # while [ $i -lt $NB_ESSAI ] ; do |
---|
| 696 | # /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job |
---|
| 697 | # status=$? |
---|
| 698 | # if [ ${status} -gt 0 ]; then |
---|
| 699 | # sleep $DELAI |
---|
| 700 | # else |
---|
| 701 | # break |
---|
| 702 | # fi |
---|
| 703 | # (( i = i + 1 )) |
---|
| 704 | # done |
---|
[544] | 705 | # ============ CESIUM END ============ # |
---|
| 706 | |
---|
| 707 | if [ $? -gt 0 ] ; then |
---|
| 708 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 709 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 710 | fi |
---|
| 711 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[99] | 712 | } |
---|
| 713 | |
---|
| 714 | #D-************************* |
---|
[717] | 715 | #D- File transfer functions |
---|
[99] | 716 | #D-************************* |
---|
| 717 | #D- |
---|
| 718 | |
---|
| 719 | #D-#================================================== |
---|
| 720 | #D-function IGCM_sys_Rsync_out |
---|
| 721 | #D-* Purpose: treat return val of rsync |
---|
| 722 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 723 | #D- Error values and explanations can depend on your system version. |
---|
| 724 | function IGCM_sys_Rsync_out { |
---|
[719] | 725 | status=$1 |
---|
| 726 | if [ ! $status ] ; then |
---|
[544] | 727 | echo "rsync error !" |
---|
| 728 | fi |
---|
[99] | 729 | |
---|
[544] | 730 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 731 | case $status in |
---|
[544] | 732 | 0) return ;; |
---|
| 733 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 734 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 735 | return;; |
---|
| 736 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 737 | echo "Incompatibilité de protocole." |
---|
| 738 | return;; |
---|
| 739 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 740 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 741 | echo "répertoires" |
---|
| 742 | return;; |
---|
| 743 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 744 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 745 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 746 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 747 | echo "pas par le serveur a été spécifiée." |
---|
| 748 | return;; |
---|
| 749 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 750 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 751 | return;; |
---|
| 752 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 753 | echo "Erreur d'entrée sortie fichier" |
---|
| 754 | return;; |
---|
| 755 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 756 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 757 | return;; |
---|
| 758 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 759 | echo "Erreur avec les diagnostics du programme" |
---|
| 760 | return;; |
---|
| 761 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 762 | echo "Erreur dans le code IPC" |
---|
| 763 | return;; |
---|
| 764 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 765 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 766 | return;; |
---|
| 767 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 768 | echo "Une erreur retournée par waitpid()" |
---|
| 769 | return;; |
---|
| 770 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 771 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 772 | return;; |
---|
| 773 | 23) echo "" |
---|
| 774 | echo "Erreur fichier inexistant" |
---|
| 775 | return;; |
---|
| 776 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 777 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 778 | return;; |
---|
[719] | 779 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[544] | 780 | return;; |
---|
| 781 | esac |
---|
| 782 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 783 | case $status in |
---|
[717] | 784 | 0) return;; |
---|
[544] | 785 | 1) echo "rsync error : Syntax or usage error " |
---|
| 786 | return;; |
---|
| 787 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 788 | return;; |
---|
| 789 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 790 | return;; |
---|
| 791 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 792 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 793 | echo "them; or an option was specified that is supported by the client and" |
---|
| 794 | echo "not by the server." |
---|
| 795 | return;; |
---|
| 796 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 797 | return;; |
---|
| 798 | 10) echo "rsync error : Error in socket I/O " |
---|
| 799 | return;; |
---|
| 800 | 11) echo "rsync error : Error in file I/O " |
---|
| 801 | return;; |
---|
| 802 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 803 | return;; |
---|
| 804 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 805 | return;; |
---|
| 806 | 14) echo "rsync error : Error in IPC code " |
---|
| 807 | return;; |
---|
| 808 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 809 | return;; |
---|
| 810 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 811 | return;; |
---|
| 812 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 813 | return;; |
---|
| 814 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 815 | return;; |
---|
| 816 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 817 | return;; |
---|
| 818 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 819 | return;; |
---|
[719] | 820 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[544] | 821 | return;; |
---|
| 822 | esac |
---|
| 823 | else |
---|
| 824 | echo "unknown language $MYLANG." |
---|
| 825 | return |
---|
| 826 | fi |
---|
[99] | 827 | } |
---|
[192] | 828 | |
---|
[99] | 829 | #D-#================================================== |
---|
[192] | 830 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 831 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 832 | #D-* Examples: |
---|
| 833 | #D- |
---|
| 834 | function IGCM_sys_Mirror_libIGCM { |
---|
[544] | 835 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 836 | if ( $DEBUG_sys ) ; then |
---|
| 837 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 838 | fi |
---|
[192] | 839 | |
---|
[717] | 840 | typeset status DEST |
---|
[192] | 841 | |
---|
[544] | 842 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[192] | 843 | |
---|
[544] | 844 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 845 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
[717] | 846 | status=$? |
---|
[192] | 847 | |
---|
[717] | 848 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 849 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 850 | cat out_rsync |
---|
| 851 | fi |
---|
| 852 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[192] | 853 | } |
---|
| 854 | |
---|
| 855 | #D-#================================================== |
---|
[99] | 856 | #D-function IGCM_sys_Cp |
---|
| 857 | #D-* Purpose: generic cp |
---|
| 858 | #D-* Examples: |
---|
| 859 | #D- |
---|
| 860 | function IGCM_sys_Cp { |
---|
[544] | 861 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 862 | if ( $DEBUG_sys ) ; then |
---|
| 863 | echo "IGCM_sys_Cp :" $@ |
---|
| 864 | fi |
---|
[99] | 865 | |
---|
[717] | 866 | typeset status |
---|
[99] | 867 | |
---|
[544] | 868 | echo cp $@ > out_rsync 2>&1 |
---|
| 869 | \cp $@ >> out_rsync 2>&1 |
---|
[717] | 870 | status=$? |
---|
[99] | 871 | |
---|
[717] | 872 | if [ ${status} -gt 0 ] ; then |
---|
| 873 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[544] | 874 | cat out_rsync |
---|
| 875 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 876 | else |
---|
| 877 | \rm out_rsync |
---|
| 878 | fi |
---|
| 879 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[99] | 880 | } |
---|
| 881 | |
---|
| 882 | #D-#================================================== |
---|
| 883 | #D-function IGCM_sys_Rm |
---|
| 884 | #D-* Purpose: generic rm |
---|
| 885 | #D-* Examples: |
---|
| 886 | #D- |
---|
| 887 | function IGCM_sys_Rm { |
---|
[544] | 888 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 889 | if ( $DEBUG_sys ) ; then |
---|
| 890 | echo "IGCM_sys_Rm :" $@ |
---|
| 891 | fi |
---|
[99] | 892 | |
---|
[717] | 893 | typeset status |
---|
[99] | 894 | |
---|
[544] | 895 | echo rm $@ > out_rsync 2>&1 |
---|
| 896 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 897 | status=$? |
---|
[99] | 898 | |
---|
[717] | 899 | if [ ${status} -gt 0 ] ; then |
---|
| 900 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[544] | 901 | cat out_rsync |
---|
| 902 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 903 | else |
---|
| 904 | \rm out_rsync |
---|
| 905 | fi |
---|
| 906 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[99] | 907 | } |
---|
| 908 | |
---|
| 909 | #D-#================================================== |
---|
| 910 | #D-function IGCM_sys_Mv |
---|
| 911 | #D-* Purpose: generic move |
---|
| 912 | #D-* Examples: |
---|
| 913 | #D- |
---|
| 914 | function IGCM_sys_Mv { |
---|
[544] | 915 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 916 | if ( $DEBUG_sys ) ; then |
---|
| 917 | echo "IGCM_sys_Mv :" $@ |
---|
| 918 | fi |
---|
[99] | 919 | |
---|
[544] | 920 | if [ $DRYRUN = 0 ]; then |
---|
[99] | 921 | |
---|
[717] | 922 | typeset status |
---|
| 923 | |
---|
[544] | 924 | echo mv $@ > out_rsync 2>&1 |
---|
| 925 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 926 | status=$? |
---|
| 927 | |
---|
| 928 | if [ ${status} -gt 0 ] ; then |
---|
| 929 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[544] | 930 | cat out_rsync |
---|
| 931 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[173] | 932 | else |
---|
[544] | 933 | \rm out_rsync |
---|
[99] | 934 | fi |
---|
[544] | 935 | else |
---|
| 936 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 937 | fi |
---|
[99] | 938 | |
---|
[544] | 939 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[99] | 940 | } |
---|
| 941 | |
---|
| 942 | #D-#================================================== |
---|
| 943 | #D-function IGCM_sys_Put_Dir |
---|
| 944 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 945 | #D-* Examples: |
---|
| 946 | #D- |
---|
| 947 | function IGCM_sys_Put_Dir { |
---|
[544] | 948 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 949 | if ( $DEBUG_sys ) ; then |
---|
| 950 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 951 | fi |
---|
| 952 | if [ $DRYRUN = 0 ]; then |
---|
| 953 | if [ ! -d ${1} ] ; then |
---|
| 954 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 955 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 956 | return |
---|
[99] | 957 | fi |
---|
| 958 | |
---|
[717] | 959 | typeset status |
---|
[99] | 960 | |
---|
[544] | 961 | # Only if we use rsync |
---|
| 962 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 963 | # |
---|
| 964 | #USUAL WAY |
---|
| 965 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
[717] | 966 | status=$? |
---|
[99] | 967 | |
---|
[717] | 968 | if [ ${status} -gt 0 ] ; then |
---|
| 969 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[544] | 970 | cat out_rsync |
---|
| 971 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[99] | 972 | else |
---|
[544] | 973 | \rm out_rsync |
---|
[99] | 974 | fi |
---|
[544] | 975 | else |
---|
| 976 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 977 | fi |
---|
| 978 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[99] | 979 | } |
---|
| 980 | |
---|
| 981 | #D-#================================================== |
---|
| 982 | #D-function IGCM_sys_Get_Dir |
---|
[544] | 983 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[99] | 984 | #D-* Examples: |
---|
| 985 | #D- |
---|
| 986 | function IGCM_sys_Get_Dir { |
---|
[544] | 987 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 988 | if ( $DEBUG_sys ) ; then |
---|
| 989 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 990 | fi |
---|
| 991 | if [ $DRYRUN = 0 ]; then |
---|
| 992 | # if [ ! -d ${1} ] ; then |
---|
| 993 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 994 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 995 | # return |
---|
| 996 | # fi |
---|
[99] | 997 | |
---|
[717] | 998 | typeset NB_ESSAI DELAI status i |
---|
| 999 | # number of tentative |
---|
| 1000 | NB_ESSAI=3 |
---|
| 1001 | # time delay between tentative |
---|
| 1002 | DELAI=2 |
---|
[99] | 1003 | |
---|
[544] | 1004 | # Only if we use rsync |
---|
| 1005 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1006 | # |
---|
| 1007 | # USUAL WAY |
---|
[717] | 1008 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
| 1009 | ccc_hsm get -r $1 |
---|
[99] | 1010 | |
---|
[717] | 1011 | i=0 |
---|
| 1012 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1013 | \cp -ur $1 $2 >> out_rsync 2>&1 |
---|
| 1014 | status=$? |
---|
| 1015 | if [ ${status} -gt 0 ]; then |
---|
| 1016 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1017 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 1018 | sleep $DELAI |
---|
| 1019 | else |
---|
| 1020 | break |
---|
| 1021 | fi |
---|
| 1022 | (( i = i + 1 )) |
---|
| 1023 | done |
---|
| 1024 | |
---|
| 1025 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1026 | echo "IGCM_sys_Get_Dir : error." |
---|
| 1027 | cat out_rsync |
---|
| 1028 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[99] | 1029 | else |
---|
[544] | 1030 | \rm out_rsync |
---|
[99] | 1031 | fi |
---|
[544] | 1032 | else |
---|
| 1033 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1034 | fi |
---|
| 1035 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[99] | 1036 | } |
---|
| 1037 | |
---|
[689] | 1038 | #==================================================== |
---|
| 1039 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1040 | if ( $MirrorlibIGCM ) ; then |
---|
| 1041 | IGCM_sys_Mirror_libIGCM |
---|
| 1042 | fi |
---|
| 1043 | |
---|
[99] | 1044 | #D-#================================================== |
---|
| 1045 | #D-function IGCM_sys_Put_Rest |
---|
[544] | 1046 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[99] | 1047 | #D- File and target directory must exist. |
---|
| 1048 | #D-* Examples: |
---|
| 1049 | #D- |
---|
| 1050 | function IGCM_sys_Put_Rest { |
---|
[544] | 1051 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1052 | if ( $DEBUG_sys ) ; then |
---|
| 1053 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1054 | fi |
---|
| 1055 | if [ $DRYRUN = 0 ]; then |
---|
| 1056 | if [ ! -f ${1} ] ; then |
---|
| 1057 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1058 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[99] | 1059 | fi |
---|
| 1060 | |
---|
[717] | 1061 | typeset status |
---|
[544] | 1062 | # |
---|
| 1063 | if [ X${JobType} = XRUN ] ; then |
---|
| 1064 | IGCM_sys_Chmod 444 ${1} |
---|
| 1065 | fi |
---|
[99] | 1066 | |
---|
[544] | 1067 | # |
---|
| 1068 | # USUAL WAY |
---|
| 1069 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1070 | status=$? |
---|
[544] | 1071 | |
---|
[717] | 1072 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1073 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1074 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[99] | 1075 | |
---|
[717] | 1076 | # #RSYNC WITH NFS USE |
---|
| 1077 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1078 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[99] | 1079 | |
---|
[717] | 1080 | # status=$? |
---|
| 1081 | # IGCM_sys_Rsync_out $status |
---|
[99] | 1082 | |
---|
[717] | 1083 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1084 | # (( status=status+$? )) |
---|
[99] | 1085 | |
---|
[717] | 1086 | if [ ${status} -gt 0 ] ; then |
---|
| 1087 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[544] | 1088 | cat out_rsync |
---|
| 1089 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[99] | 1090 | else |
---|
[544] | 1091 | \rm out_rsync |
---|
[99] | 1092 | fi |
---|
[544] | 1093 | else |
---|
| 1094 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1095 | fi |
---|
| 1096 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[99] | 1097 | } |
---|
| 1098 | |
---|
| 1099 | #D-#================================================== |
---|
[544] | 1100 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1101 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1102 | #D- File and target directory must exist. |
---|
| 1103 | #D-* Examples: |
---|
| 1104 | #D- |
---|
| 1105 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1106 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1107 | if ( $DEBUG_sys ) ; then |
---|
| 1108 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1109 | fi |
---|
| 1110 | if [ $DRYRUN = 0 ]; then |
---|
| 1111 | if [ ! -f ${1} ] ; then |
---|
| 1112 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1113 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1114 | fi |
---|
| 1115 | |
---|
[717] | 1116 | typeset status |
---|
[544] | 1117 | # |
---|
| 1118 | if [ X${JobType} = XRUN ] ; then |
---|
| 1119 | IGCM_sys_Chmod 444 ${1} |
---|
| 1120 | fi |
---|
| 1121 | |
---|
| 1122 | # |
---|
| 1123 | # USUAL WAY |
---|
| 1124 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1125 | status=$? |
---|
[544] | 1126 | |
---|
[717] | 1127 | if [ ${status} -gt 0 ] ; then |
---|
| 1128 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[544] | 1129 | cat out_rsync |
---|
| 1130 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1131 | else |
---|
| 1132 | \rm out_rsync |
---|
| 1133 | fi |
---|
| 1134 | else |
---|
| 1135 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1136 | fi |
---|
| 1137 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1138 | } |
---|
| 1139 | |
---|
| 1140 | #D-#================================================== |
---|
[801] | 1141 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1142 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1143 | #D-* Examples: |
---|
| 1144 | #D- |
---|
| 1145 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1146 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 1147 | echo $1 |
---|
| 1148 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1149 | } |
---|
| 1150 | |
---|
| 1151 | #D-#================================================== |
---|
[99] | 1152 | #D-function IGCM_sys_Put_Out |
---|
[544] | 1153 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[99] | 1154 | #D-* Examples: |
---|
| 1155 | #D- |
---|
| 1156 | function IGCM_sys_Put_Out { |
---|
[544] | 1157 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1158 | if ( $DEBUG_sys ) ; then |
---|
| 1159 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1160 | fi |
---|
[717] | 1161 | |
---|
| 1162 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1163 | |
---|
| 1164 | # number of tentative |
---|
| 1165 | NB_ESSAI=3 |
---|
| 1166 | # time delay between tentative |
---|
| 1167 | DELAI=2 |
---|
| 1168 | |
---|
[544] | 1169 | if [ $DRYRUN = 0 ]; then |
---|
| 1170 | if [ ! -f ${1} ] ; then |
---|
| 1171 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1172 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1173 | return 1 |
---|
[99] | 1174 | fi |
---|
[544] | 1175 | # |
---|
| 1176 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1177 | # |
---|
[99] | 1178 | |
---|
[544] | 1179 | #===================================================== |
---|
| 1180 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1181 | #===================================================== |
---|
[99] | 1182 | |
---|
[544] | 1183 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1184 | #if [ $? -eq 0 ] ; then |
---|
| 1185 | # typeset WORKPATH FILEPATH |
---|
| 1186 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
[717] | 1187 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
[544] | 1188 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1189 | # # |
---|
| 1190 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1191 | #fi |
---|
[99] | 1192 | |
---|
[544] | 1193 | if [ X${JobType} = XRUN ] ; then |
---|
| 1194 | if [ X${3} = X ] ; then |
---|
[717] | 1195 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1196 | fi |
---|
| 1197 | fi |
---|
| 1198 | # |
---|
[99] | 1199 | |
---|
[717] | 1200 | exist=false |
---|
| 1201 | skip=false |
---|
| 1202 | if [ -f $2 ] ; then |
---|
| 1203 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1204 | #dmget $2 |
---|
| 1205 | ccc_hsm get $2 |
---|
| 1206 | exist=true |
---|
| 1207 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1208 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1209 | skip=true |
---|
| 1210 | else |
---|
| 1211 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1212 | skip=false |
---|
| 1213 | fi |
---|
| 1214 | fi |
---|
| 1215 | # |
---|
| 1216 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1217 | IGCM_sys_Chmod u+w $2 |
---|
| 1218 | fi |
---|
[99] | 1219 | |
---|
[717] | 1220 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1221 | i=0 |
---|
[717] | 1222 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1223 | # USUAL WAY |
---|
| 1224 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1225 | status=$? |
---|
| 1226 | if [ ${status} -gt 0 ]; then |
---|
| 1227 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1228 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
| 1229 | sleep $DELAI |
---|
| 1230 | else |
---|
| 1231 | break |
---|
| 1232 | fi |
---|
| 1233 | (( i = i + 1 )) |
---|
| 1234 | done |
---|
| 1235 | fi |
---|
[99] | 1236 | |
---|
[717] | 1237 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1238 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1239 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[99] | 1240 | |
---|
[717] | 1241 | # #RSYNC WITH NFS USE |
---|
| 1242 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1243 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[99] | 1244 | |
---|
[717] | 1245 | # status=$? |
---|
| 1246 | # IGCM_sys_Rsync_out $status |
---|
| 1247 | |
---|
| 1248 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1249 | # (( status=status+$? )) |
---|
| 1250 | |
---|
| 1251 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1252 | echo "IGCM_sys_Put_Out : error." |
---|
| 1253 | cat out_rsync |
---|
| 1254 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[99] | 1255 | else |
---|
[544] | 1256 | \rm out_rsync |
---|
[99] | 1257 | fi |
---|
[544] | 1258 | else |
---|
| 1259 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1260 | fi |
---|
| 1261 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1262 | return 0 |
---|
[99] | 1263 | } |
---|
| 1264 | |
---|
| 1265 | #D-#================================================== |
---|
[544] | 1266 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1267 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1268 | #D-* Examples: |
---|
| 1269 | #D- |
---|
| 1270 | function IGCM_sys_PutBuffer_Out { |
---|
| 1271 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1272 | if ( $DEBUG_sys ) ; then |
---|
| 1273 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1274 | fi |
---|
[717] | 1275 | |
---|
| 1276 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1277 | |
---|
| 1278 | # number of tentative |
---|
| 1279 | NB_ESSAI=3 |
---|
| 1280 | # time delay between tentative |
---|
| 1281 | DELAI=2 |
---|
| 1282 | |
---|
[544] | 1283 | if [ $DRYRUN = 0 ]; then |
---|
| 1284 | if [ ! -f ${1} ] ; then |
---|
| 1285 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1286 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1287 | return 1 |
---|
| 1288 | fi |
---|
| 1289 | # |
---|
| 1290 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1291 | # |
---|
| 1292 | |
---|
| 1293 | if [ X${JobType} = XRUN ] ; then |
---|
| 1294 | if [ X${3} = X ] ; then |
---|
[717] | 1295 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1296 | fi |
---|
| 1297 | fi |
---|
[717] | 1298 | |
---|
| 1299 | exist=false |
---|
| 1300 | skip=false |
---|
| 1301 | if [ -f $2 ] ; then |
---|
| 1302 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1303 | exist=true |
---|
| 1304 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1305 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1306 | skip=true |
---|
| 1307 | else |
---|
| 1308 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1309 | skip=false |
---|
| 1310 | fi |
---|
| 1311 | fi |
---|
[544] | 1312 | # |
---|
[717] | 1313 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1314 | IGCM_sys_Chmod u+w $2 |
---|
| 1315 | fi |
---|
[544] | 1316 | |
---|
[717] | 1317 | if [ X${skip} = Xfalse ] ; then |
---|
| 1318 | i=0 |
---|
| 1319 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1320 | # USUAL WAY |
---|
| 1321 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1322 | status=$? |
---|
| 1323 | if [ ${status} -gt 0 ]; then |
---|
| 1324 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1325 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 1326 | sleep $DELAI |
---|
| 1327 | else |
---|
| 1328 | break |
---|
| 1329 | fi |
---|
| 1330 | (( i = i + 1 )) |
---|
| 1331 | done |
---|
| 1332 | fi |
---|
| 1333 | |
---|
| 1334 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1335 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1336 | cat out_rsync |
---|
| 1337 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1338 | else |
---|
| 1339 | \rm out_rsync |
---|
| 1340 | fi |
---|
| 1341 | else |
---|
| 1342 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1343 | fi |
---|
| 1344 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1345 | return 0 |
---|
| 1346 | } |
---|
| 1347 | |
---|
| 1348 | #D-#================================================== |
---|
[99] | 1349 | #D-function IGCM_sys_Get |
---|
| 1350 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1351 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1352 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1353 | function IGCM_sys_Get { |
---|
[544] | 1354 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[99] | 1355 | |
---|
[719] | 1356 | typeset DEST dm_liste ifile target file_work |
---|
[717] | 1357 | typeset NB_ESSAI DELAI status i |
---|
[99] | 1358 | |
---|
[544] | 1359 | if ( $DEBUG_sys ) ; then |
---|
| 1360 | echo "IGCM_sys_Get :" $@ |
---|
| 1361 | fi |
---|
[717] | 1362 | |
---|
| 1363 | # number of tentative |
---|
| 1364 | NB_ESSAI=3 |
---|
| 1365 | # time delay between tentative |
---|
| 1366 | DELAI=2 |
---|
| 1367 | |
---|
[544] | 1368 | if [ $DRYRUN -le 2 ]; then |
---|
| 1369 | if [ X${1} = X'/l' ] ; then |
---|
| 1370 | # test if the first file is present in the old computation : |
---|
| 1371 | eval set +A dm_liste \${${2}} |
---|
| 1372 | else |
---|
| 1373 | eval set +A dm_liste ${1} |
---|
[99] | 1374 | fi |
---|
[544] | 1375 | eval DEST=\${${#}} |
---|
[99] | 1376 | |
---|
[544] | 1377 | #===================================================== |
---|
| 1378 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1379 | #===================================================== |
---|
[99] | 1380 | |
---|
[544] | 1381 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1382 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1383 | #if [ $? -eq 0 ] ; then |
---|
| 1384 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1385 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1386 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1387 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1388 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1389 | # return |
---|
| 1390 | # fi |
---|
| 1391 | #fi |
---|
[99] | 1392 | |
---|
[587] | 1393 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1394 | status=$? |
---|
| 1395 | if [ ${status} -gt 0 ] ; then |
---|
| 1396 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[544] | 1397 | cat out_rsync |
---|
| 1398 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1399 | fi |
---|
[99] | 1400 | |
---|
[717] | 1401 | #if [ ${status} -gt 0 ] ; then |
---|
[544] | 1402 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1403 | # cat out_rsync |
---|
| 1404 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1405 | # sleep 30 |
---|
| 1406 | # echo "We try another time" |
---|
[587] | 1407 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1408 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1409 | # status=$? |
---|
| 1410 | # if [ ${status} -gt 0 ] ; then |
---|
| 1411 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1412 | # cat out_rsync |
---|
| 1413 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[544] | 1414 | # fi |
---|
| 1415 | # else |
---|
| 1416 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1417 | # cat out_rsync |
---|
| 1418 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1419 | # fi |
---|
| 1420 | #fi |
---|
[99] | 1421 | |
---|
[719] | 1422 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1423 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1424 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1425 | |
---|
| 1426 | # #RSYNC WITH NFS USE |
---|
| 1427 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1428 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1429 | |
---|
| 1430 | # status=$? |
---|
| 1431 | # IGCM_sys_Rsync_out $status |
---|
| 1432 | |
---|
| 1433 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1434 | # (( status=status+$? )) |
---|
| 1435 | |
---|
[544] | 1436 | #USUAL WAY |
---|
| 1437 | if [ X${1} = X'/l' ] ; then |
---|
| 1438 | for target in ${dm_liste[*]} ; do |
---|
[717] | 1439 | local_file=$( basename ${target} ) |
---|
| 1440 | # test if the target file is present before the loop |
---|
| 1441 | IGCM_sys_TestFileArchive ${target} |
---|
| 1442 | status=$? |
---|
| 1443 | if [ ${status} -gt 0 ] ; then |
---|
| 1444 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
| 1445 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1446 | else |
---|
[719] | 1447 | i=0 |
---|
[717] | 1448 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1449 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1450 | status=$? |
---|
| 1451 | if [ ${status} -gt 0 ]; then |
---|
| 1452 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1453 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1454 | sleep $DELAI |
---|
| 1455 | else |
---|
| 1456 | break |
---|
| 1457 | fi |
---|
| 1458 | (( i = i + 1 )) |
---|
| 1459 | done |
---|
[719] | 1460 | if [ ${status} -gt 0 ] ; then |
---|
| 1461 | echo "IGCM_sys_Get : error" |
---|
| 1462 | cat out_rsync |
---|
| 1463 | \rm out_rsync |
---|
| 1464 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1465 | else |
---|
| 1466 | \rm out_rsync |
---|
| 1467 | fi |
---|
[717] | 1468 | fi |
---|
[544] | 1469 | done |
---|
| 1470 | else |
---|
[719] | 1471 | i=0 |
---|
| 1472 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1473 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1474 | status=$? |
---|
| 1475 | if [ ${status} -gt 0 ]; then |
---|
| 1476 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1477 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1478 | sleep $DELAI |
---|
| 1479 | else |
---|
| 1480 | break |
---|
| 1481 | fi |
---|
| 1482 | (( i = i + 1 )) |
---|
| 1483 | done |
---|
| 1484 | if [ ${status} -gt 0 ] ; then |
---|
| 1485 | echo "IGCM_sys_Get : error" |
---|
| 1486 | cat out_rsync |
---|
| 1487 | \rm out_rsync |
---|
| 1488 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1489 | else |
---|
| 1490 | \rm out_rsync |
---|
| 1491 | fi |
---|
[544] | 1492 | fi |
---|
| 1493 | else |
---|
| 1494 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1495 | fi |
---|
| 1496 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[99] | 1497 | } |
---|
| 1498 | |
---|
| 1499 | #D-#================================================== |
---|
[544] | 1500 | #D-function IGCM_sys_GetBuffer |
---|
| 1501 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1502 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1503 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1504 | function IGCM_sys_GetBuffer { |
---|
| 1505 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1506 | |
---|
[719] | 1507 | typeset DEST buf_liste ifile target file_work |
---|
| 1508 | typeset NB_ESSAI DELAI status i |
---|
[544] | 1509 | |
---|
| 1510 | if ( $DEBUG_sys ) ; then |
---|
| 1511 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1512 | fi |
---|
[719] | 1513 | |
---|
| 1514 | # number of tentative |
---|
| 1515 | NB_ESSAI=3 |
---|
| 1516 | # time delay between tentative |
---|
| 1517 | DELAI=2 |
---|
| 1518 | |
---|
[544] | 1519 | if [ $DRYRUN -le 2 ]; then |
---|
| 1520 | if [ X${1} = X'/l' ] ; then |
---|
| 1521 | # test if the first file is present in the old computation : |
---|
| 1522 | eval set +A buf_liste \${${2}} |
---|
| 1523 | else |
---|
| 1524 | eval set +A buf_liste ${1} |
---|
| 1525 | fi |
---|
| 1526 | eval DEST=\${${#}} |
---|
| 1527 | |
---|
| 1528 | #USUAL WAY |
---|
| 1529 | if [ X${1} = X'/l' ] ; then |
---|
| 1530 | for target in ${buf_liste[*]} ; do |
---|
[717] | 1531 | local_file=$( basename ${target} ) |
---|
[719] | 1532 | i=0 |
---|
| 1533 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1534 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1535 | status=$? |
---|
| 1536 | if [ ${status} -gt 0 ]; then |
---|
| 1537 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1538 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1539 | sleep $DELAI |
---|
| 1540 | else |
---|
| 1541 | break |
---|
| 1542 | fi |
---|
| 1543 | (( i = i + 1 )) |
---|
| 1544 | done |
---|
| 1545 | if [ ${status} -gt 0 ] ; then |
---|
| 1546 | echo "IGCM_sys_Get : error" |
---|
| 1547 | cat out_rsync |
---|
| 1548 | \rm out_rsync |
---|
| 1549 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1550 | else |
---|
| 1551 | \rm out_rsync |
---|
| 1552 | fi |
---|
[544] | 1553 | done |
---|
| 1554 | else |
---|
[719] | 1555 | i=0 |
---|
| 1556 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1557 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1558 | status=$? |
---|
| 1559 | if [ ${status} -gt 0 ]; then |
---|
| 1560 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1561 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1562 | sleep $DELAI |
---|
| 1563 | else |
---|
| 1564 | break |
---|
| 1565 | fi |
---|
| 1566 | (( i = i + 1 )) |
---|
| 1567 | done |
---|
| 1568 | if [ ${status} -gt 0 ] ; then |
---|
| 1569 | echo "IGCM_sys_Get : error" |
---|
| 1570 | cat out_rsync |
---|
| 1571 | \rm out_rsync |
---|
| 1572 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1573 | else |
---|
| 1574 | \rm out_rsync |
---|
| 1575 | fi |
---|
[544] | 1576 | fi |
---|
| 1577 | else |
---|
| 1578 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1579 | fi |
---|
| 1580 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1581 | } |
---|
| 1582 | |
---|
| 1583 | #D-#================================================== |
---|
[99] | 1584 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1585 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1586 | #D-* Examples: |
---|
| 1587 | #D- |
---|
| 1588 | function IGCM_sys_GetDate_FichWork { |
---|
[544] | 1589 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1590 | if ( $DEBUG_sys ) ; then |
---|
| 1591 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1592 | fi |
---|
| 1593 | typeset dateF |
---|
[689] | 1594 | set +A dateF -- $( IGCM_sys_RshMaster "ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1}" ) |
---|
[544] | 1595 | eval ${2}=${dateF[5]} |
---|
[540] | 1596 | |
---|
[99] | 1597 | # donne la date filesys d'un fichier sur la machine work |
---|
[544] | 1598 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[99] | 1599 | } |
---|
| 1600 | |
---|
| 1601 | #D-#================================================== |
---|
| 1602 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[717] | 1603 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[99] | 1604 | #D-* Examples: |
---|
| 1605 | #D- |
---|
| 1606 | function IGCM_sys_GetDate_FichArchive { |
---|
[544] | 1607 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1608 | if ( $DEBUG_sys ) ; then |
---|
| 1609 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1610 | fi |
---|
| 1611 | typeset dateF |
---|
[689] | 1612 | set +A dateF -- $( IGCM_sys_RshMaster "ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1}" ) |
---|
[544] | 1613 | eval ${2}=${dateF[5]} |
---|
[540] | 1614 | |
---|
[544] | 1615 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
[99] | 1616 | } |
---|
| 1617 | |
---|
| 1618 | ############################################################## |
---|
| 1619 | # REBUILD OPERATOR |
---|
| 1620 | |
---|
| 1621 | function IGCM_sys_rebuild { |
---|
[544] | 1622 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1623 | if ( $DEBUG_sys ) ; then |
---|
| 1624 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1625 | fi |
---|
[717] | 1626 | |
---|
[734] | 1627 | typeset NB_ESSAI DELAI status i firstArg |
---|
[717] | 1628 | # number of tentative |
---|
| 1629 | NB_ESSAI=3 |
---|
| 1630 | # time delay between tentative |
---|
| 1631 | DELAI=2 |
---|
| 1632 | |
---|
| 1633 | i=0 |
---|
| 1634 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1635 | /home/cont003/p86ipsl/SX8/bin/rebuild -f -o $@ > out_rsync 2>&1 |
---|
| 1636 | status=$? |
---|
| 1637 | if [ ${status} -gt 0 ] ; then |
---|
| 1638 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1639 | cat out_rsync |
---|
| 1640 | \rm out_rsync |
---|
| 1641 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1642 | firstArg=${1} |
---|
| 1643 | \rm ${firstArg} |
---|
[733] | 1644 | sleep $DELAI |
---|
[717] | 1645 | else |
---|
| 1646 | \rm out_rsync |
---|
| 1647 | break |
---|
| 1648 | fi |
---|
| 1649 | (( i = i + 1 )) |
---|
| 1650 | done |
---|
| 1651 | |
---|
[725] | 1652 | if [ ${status} -gt 0 ] ; then |
---|
[717] | 1653 | echo "IGCM_sys_rebuild : rebuild error" |
---|
[544] | 1654 | IGCM_debug_Exit "rebuild" |
---|
| 1655 | fi |
---|
[99] | 1656 | |
---|
[544] | 1657 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[99] | 1658 | } |
---|
| 1659 | |
---|
[697] | 1660 | function IGCM_sys_rebuild_station { |
---|
| 1661 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1662 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1663 | if ( $DEBUG_sys ) ; then |
---|
| 1664 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1665 | fi |
---|
| 1666 | list_opt=$@ |
---|
| 1667 | |
---|
| 1668 | # Invert Axis : t,x -> x,t |
---|
| 1669 | # t,pres,x -> x,t,pres |
---|
| 1670 | # So that we can concatenate along x |
---|
| 1671 | i=0 |
---|
| 1672 | for file_in in ${list_opt} ; do |
---|
| 1673 | (( i = i + 1)) |
---|
| 1674 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1675 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1676 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1677 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1678 | done |
---|
| 1679 | |
---|
| 1680 | # Concatenate |
---|
| 1681 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1682 | |
---|
| 1683 | # Re-ivert file |
---|
| 1684 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1685 | |
---|
| 1686 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1687 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1688 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1689 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1690 | # BEGIN reordering |
---|
| 1691 | |
---|
| 1692 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1693 | # We isolate this in the code below: |
---|
| 1694 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1695 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1696 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1697 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1698 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1699 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1700 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1701 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1702 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1703 | # typeset -Z4 j4 |
---|
| 1704 | # typeset -Z3 j3 |
---|
| 1705 | |
---|
| 1706 | # unset list_opt |
---|
| 1707 | # set +A list_opt $@ |
---|
| 1708 | |
---|
| 1709 | # Filename after rebuild |
---|
| 1710 | # file_out=${list_opt[0]} |
---|
| 1711 | # Prefix of output files |
---|
| 1712 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1713 | # Number of procs |
---|
| 1714 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1715 | |
---|
| 1716 | # iProc=0 |
---|
| 1717 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1718 | # Array containing Station as a number |
---|
| 1719 | # unset proc_stn |
---|
| 1720 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1721 | # Number of stations produced by processor proc |
---|
| 1722 | # stationLast=${#proc_stn[*]} |
---|
| 1723 | # Proc number on 4 digits |
---|
| 1724 | # j4=${iProc} |
---|
| 1725 | # Init |
---|
| 1726 | # iStation=0 |
---|
| 1727 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1728 | # Station number on 3 digits |
---|
| 1729 | # j3=${proc_stn[${iStation}]} |
---|
| 1730 | # Extract station |
---|
| 1731 | # Invert Axis : t,x -> x,t |
---|
| 1732 | # t,pres,x -> x,t,pres |
---|
| 1733 | # So that we can concatenate along x |
---|
| 1734 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1735 | # (( iStation = iStation + 1 )) |
---|
| 1736 | # done |
---|
| 1737 | # (( iProc = iProc + 1 )) |
---|
| 1738 | # done |
---|
| 1739 | |
---|
| 1740 | # Concatenate all station along x |
---|
| 1741 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1742 | |
---|
| 1743 | # Re-invert file |
---|
| 1744 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1745 | |
---|
| 1746 | # END reordering |
---|
| 1747 | |
---|
| 1748 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1749 | } |
---|
| 1750 | |
---|
[99] | 1751 | ############################################################ |
---|
| 1752 | # Activate Running Environnment Variables |
---|
| 1753 | |
---|
| 1754 | function IGCM_sys_activ_variables { |
---|
[544] | 1755 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1756 | if ( $DEBUG_sys ) ; then |
---|
| 1757 | echo "IGCM_sys_activ_variables" |
---|
| 1758 | fi |
---|
[99] | 1759 | |
---|
| 1760 | # -------------------------------------------------------------------- |
---|
| 1761 | #D- MPI specifications |
---|
| 1762 | # -------------------------------------------------------------------- |
---|
| 1763 | |
---|
| 1764 | #D-- MPISUSPEND |
---|
[544] | 1765 | export MPISUSPEND=${MPISUSPEND:=OFF} |
---|
[136] | 1766 | |
---|
| 1767 | #D-- MPIPROGINF #other choices : ALL_DETAIL2 |
---|
[544] | 1768 | export MPIPROGINF=ALL |
---|
[136] | 1769 | #D- activate ftrace (with -ftrace) |
---|
[544] | 1770 | export F_FTRACE=YES |
---|
[136] | 1771 | #D- communication information (with -ftrace) |
---|
[544] | 1772 | export MPICOMMINF=DETAIL |
---|
[99] | 1773 | |
---|
| 1774 | # -------------------------------------------------------------------- |
---|
| 1775 | #D- Other specifications |
---|
| 1776 | # -------------------------------------------------------------------- |
---|
| 1777 | |
---|
| 1778 | #D- max number of character/line in output job |
---|
[544] | 1779 | export F_SYSLEN=5000 |
---|
[99] | 1780 | #D- number of error that can be admitted on the NEC |
---|
[544] | 1781 | export F_ERRCNT=0 |
---|
[99] | 1782 | #D- global performance |
---|
[544] | 1783 | export F_PROGINF=DETAIL |
---|
[136] | 1784 | |
---|
[99] | 1785 | #D- I/O performance (FORTRAN I/O only not netCDF) |
---|
[544] | 1786 | export F_FILEINF=${F_FILEINF:=NO} |
---|
[136] | 1787 | #D- netCDF I/O performance |
---|
[544] | 1788 | export NC_FILEINF=${NC_FILEINF:=NO} |
---|
[99] | 1789 | |
---|
[544] | 1790 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[99] | 1791 | } |
---|
| 1792 | |
---|
| 1793 | ############################################################ |
---|
| 1794 | # Desactivate Running Environnment Variables |
---|
| 1795 | |
---|
| 1796 | function IGCM_sys_desactiv_variables { |
---|
[544] | 1797 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1798 | if ( $DEBUG_sys ) ; then |
---|
| 1799 | echo "IGCM_sys_desactiv_variables" |
---|
| 1800 | fi |
---|
[99] | 1801 | # -------------------------------------------------------------------- |
---|
| 1802 | #D- MPI specifications |
---|
| 1803 | # -------------------------------------------------------------------- |
---|
| 1804 | |
---|
| 1805 | #D-- MPIPROGINF |
---|
[544] | 1806 | export MPIPROGINF=NO |
---|
[99] | 1807 | |
---|
| 1808 | # -------------------------------------------------------------------- |
---|
| 1809 | #D- Other specifications |
---|
| 1810 | # -------------------------------------------------------------------- |
---|
| 1811 | |
---|
| 1812 | #D- global performance |
---|
[544] | 1813 | export F_PROGINF=NO |
---|
[99] | 1814 | |
---|
[544] | 1815 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[99] | 1816 | } |
---|
| 1817 | |
---|
| 1818 | ############################################################ |
---|
[621] | 1819 | # Build MPI/OMP scripts |
---|
[717] | 1820 | function IGCM_sys_build_execution_scripts |
---|
[621] | 1821 | { |
---|
[664] | 1822 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1823 | if ( $DEBUG_sys ) ; then |
---|
| 1824 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1825 | fi |
---|
[99] | 1826 | |
---|
[664] | 1827 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
| 1828 | |
---|
| 1829 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
| 1830 | IGCM_debug_Exit "IGCM_sys_mercurex9 build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
| 1831 | fi |
---|
[621] | 1832 | |
---|
[664] | 1833 | if ( ${OK_PARA_MPMD} ) ; then |
---|
[621] | 1834 | |
---|
[664] | 1835 | if [ -f run_file ] ; then |
---|
| 1836 | IGCM_sys_Rm -f run_file |
---|
| 1837 | fi |
---|
| 1838 | touch run_file |
---|
[621] | 1839 | |
---|
[664] | 1840 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1841 | IGCM_debug_Print 2 "Error in config.card on SX9 : OpenMP not available" |
---|
| 1842 | exit 1 |
---|
| 1843 | else |
---|
[621] | 1844 | # OLD : |
---|
| 1845 | #PBS -v BATCH_NUM_PROC_TOT=4 |
---|
| 1846 | #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} |
---|
[664] | 1847 | echo "Job_${config_UserChoices_JobName} includes BATCH_NUM_PROC_TOT = \c" |
---|
| 1848 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" |
---|
| 1849 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" ) |
---|
| 1850 | NbProc_Job=${NbProc_Job:=0} |
---|
| 1851 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
| 1852 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no BATCH_NUM_PROC_TOT defined with MPI only run." |
---|
| 1853 | exit 1 |
---|
| 1854 | fi |
---|
| 1855 | fi |
---|
[621] | 1856 | |
---|
| 1857 | # run_file construction |
---|
| 1858 | |
---|
| 1859 | # Then first loop on the components for the coupler ie oasis |
---|
| 1860 | |
---|
| 1861 | ### the coupler ie oasis must be the first one |
---|
| 1862 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[664] | 1863 | |
---|
| 1864 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1865 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1866 | |
---|
| 1867 | # for CPL component only |
---|
| 1868 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1869 | |
---|
| 1870 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1871 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[621] | 1872 | |
---|
[664] | 1873 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1874 | echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file |
---|
[621] | 1875 | fi |
---|
[664] | 1876 | fi |
---|
[621] | 1877 | done |
---|
| 1878 | |
---|
| 1879 | # Then second loop on the components |
---|
| 1880 | |
---|
| 1881 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[664] | 1882 | |
---|
| 1883 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1884 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1885 | |
---|
| 1886 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1887 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1888 | |
---|
| 1889 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1890 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[621] | 1891 | |
---|
[664] | 1892 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1893 | echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file |
---|
[621] | 1894 | fi |
---|
[664] | 1895 | fi |
---|
[621] | 1896 | done |
---|
| 1897 | |
---|
| 1898 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
| 1899 | |
---|
| 1900 | IGCM_sys_Chmod u+x run_file |
---|
| 1901 | if ( $DEBUG_sys ) ; then |
---|
| 1902 | echo "run_file contains : " |
---|
| 1903 | cat run_file |
---|
| 1904 | fi |
---|
| 1905 | |
---|
[664] | 1906 | else # Only one executable. launch it. |
---|
[621] | 1907 | |
---|
| 1908 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1909 | |
---|
[664] | 1910 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1911 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[621] | 1912 | |
---|
[664] | 1913 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
| 1914 | EXECUTION="time mpirun -np ${BATCH_NUM_PROC_TOT} ./${ExeNameOut}" |
---|
| 1915 | fi |
---|
[621] | 1916 | done |
---|
| 1917 | |
---|
[664] | 1918 | fi |
---|
[621] | 1919 | |
---|
[664] | 1920 | IGCM_debug_Print 1 "sys mercurex9 : execution command is " |
---|
| 1921 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[621] | 1922 | |
---|
[664] | 1923 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[621] | 1924 | |
---|
| 1925 | } |
---|
| 1926 | |
---|
[99] | 1927 | function IGCM_sys_build_run_file { |
---|
| 1928 | |
---|
[621] | 1929 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
| 1930 | |
---|
[99] | 1931 | } |
---|
[651] | 1932 | |
---|
| 1933 | ############################################################ |
---|
| 1934 | # Check of space available on temporary filesytems |
---|
| 1935 | function IGCM_sys_check_quota { |
---|
| 1936 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
[664] | 1937 | |
---|
[651] | 1938 | if ( $DEBUG_sys ) ; then |
---|
| 1939 | echo "IGCM_sys_check_quota " |
---|
| 1940 | fi |
---|
| 1941 | # Limit of quota (in %) |
---|
[705] | 1942 | limit_quota=95 |
---|
[651] | 1943 | |
---|
[652] | 1944 | # Check of the volume (use of RshMaster waiting for ccc_quota command available on SX9 nodes) |
---|
[674] | 1945 | # volume_quota=$( IGCM_sys_RshMaster "/applications/ccc-tools/ccc_quota | grep ' scratch' | awk '{print \$2}'" ) |
---|
| 1946 | # volume_avail=$( IGCM_sys_RshMaster "/applications/ccc-tools/ccc_quota | grep ' scratch' | awk '{print \$3}'" ) |
---|
[651] | 1947 | |
---|
[674] | 1948 | volume_quota=$(quota -h | grep 'scratch' | awk '{print $2}') |
---|
| 1949 | volume_avail=$(quota -h | grep 'scratch' | awk '{print $3}') |
---|
[652] | 1950 | |
---|
[651] | 1951 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
| 1952 | |
---|
[652] | 1953 | unit_quota=$( echo $volume_quota | awk '{print(substr($0, length($0), length($0)))}' ) |
---|
| 1954 | unit_avail=$( echo $volume_avail | awk '{print(substr($0, length($0), length($0)))}' ) |
---|
[651] | 1955 | |
---|
[696] | 1956 | if [ "${unit_quota}" = "*" ] ; then |
---|
| 1957 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 1958 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 1959 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 1960 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 1961 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 1962 | IGCM_debug_Verif_Exit |
---|
| 1963 | fi |
---|
| 1964 | |
---|
[652] | 1965 | temp_avail=${volume_avail%%${unit_avail}*} |
---|
| 1966 | temp_quota=${volume_quota%%${unit_quota}*} |
---|
[651] | 1967 | |
---|
| 1968 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 1969 | |
---|
| 1970 | # Convertion |
---|
[652] | 1971 | if [ ${unit_avail} = "T" ] ; then |
---|
[651] | 1972 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
[652] | 1973 | elif [ ${unit_avail} = "G" ] ; then |
---|
[651] | 1974 | (( temp_avail = temp_avail * 1000000000 )) |
---|
[652] | 1975 | elif [ ${unit_avail} = "M" ] ; then |
---|
[651] | 1976 | (( temp_avail = temp_avail * 1000000 )) |
---|
[652] | 1977 | elif [ ${unit_avail} = "k" ] ; then |
---|
[651] | 1978 | (( temp_avail = temp_avail * 1000 )) |
---|
| 1979 | else |
---|
| 1980 | (( temp_avail = volume_avail )) |
---|
| 1981 | fi |
---|
[652] | 1982 | if [ ${unit_quota} = "T" ] ; then |
---|
[651] | 1983 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
[652] | 1984 | elif [ ${unit_quota} = "G" ] ; then |
---|
[651] | 1985 | (( temp_quota = temp_quota * 1000000000 )) |
---|
[652] | 1986 | elif [ ${unit_quota} = "M" ] ; then |
---|
[651] | 1987 | (( temp_quota = temp_quota * 1000000 )) |
---|
[652] | 1988 | elif [ ${unit_quota} = "k" ] ; then |
---|
[651] | 1989 | (( temp_quota = temp_quota * 1000 )) |
---|
| 1990 | else |
---|
| 1991 | (( temp_quota = volume_quota )) |
---|
| 1992 | fi |
---|
| 1993 | fi |
---|
| 1994 | |
---|
| 1995 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 1996 | # echo "volume ratio is " $quota_volume |
---|
| 1997 | |
---|
| 1998 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
[652] | 1999 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
[654] | 2000 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 2001 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
[651] | 2002 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2003 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2004 | IGCM_debug_Verif_Exit |
---|
| 2005 | fi |
---|
| 2006 | |
---|
| 2007 | fi |
---|
| 2008 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 2009 | } |
---|