[676] | 1 | #!/bin/ksh |
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[257] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[257] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[676] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[257] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Mercure X64 |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[676] | 24 | #D- This ksh library if a layer under some usefull |
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[257] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[544] | 64 | # Host and user names |
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[257] | 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | |
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| 70 | #D- |
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| 71 | #D-#================================================== |
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| 72 | #D-Program used in libIGCM |
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| 73 | #D-#================================================== |
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| 74 | |
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[742] | 75 | # Submit command |
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| 76 | typeset SUBMIT=${SUBMIT:=qsub} |
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[257] | 77 | # rsync with path |
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| 78 | typeset -r RSYNC=/usr/bin/rsync |
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| 79 | # RSYNC_opt args to rsync |
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| 80 | typeset -r RSYNC_opt="-va" |
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| 81 | # ie storage filesystem |
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| 82 | typeset -r RHOST=mercure |
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| 83 | |
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| 84 | #==================================================== |
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[305] | 85 | # Set environment tools (ferret, nco, cdo) |
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| 86 | #==================================================== |
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[257] | 87 | . /home/cont003/p86ipsl/.atlas_env_mercure01_ksh |
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| 88 | |
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| 89 | #==================================================== |
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[736] | 90 | # AddNoise PATH |
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| 91 | #==================================================== |
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| 92 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X86_64/bin |
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| 93 | |
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| 94 | #==================================================== |
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[257] | 95 | # Host specific DIRECTORIES |
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| 96 | #==================================================== |
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| 97 | |
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| 98 | #==================================================== |
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| 99 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 100 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 101 | |
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| 102 | #==================================================== |
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[676] | 103 | # For interactive jobs on mercure |
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[257] | 104 | PBS_O_WORKDIR=${PBS_O_WORKDIR:=$(pwd)} |
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| 105 | |
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| 106 | #==================================================== |
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| 107 | #- SUBMIT_DIR : submission dir |
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| 108 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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| 109 | |
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| 110 | #==================================================== |
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| 111 | #- IN |
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[545] | 112 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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[717] | 113 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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[257] | 114 | |
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| 115 | #==================================================== |
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[725] | 116 | #- ARCHIVE (dedicated to large files) |
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| 117 | typeset ARCHIVE=${CCCSTOREDIR} |
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| 118 | |
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| 119 | #==================================================== |
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| 120 | #- STORAGE (dedicated to small/medium files) |
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| 121 | typeset STORAGE=${CCCWORKDIR} |
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| 122 | |
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| 123 | #==================================================== |
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[544] | 124 | #- R_OUT |
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[725] | 125 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[257] | 126 | |
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| 127 | #==================================================== |
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[587] | 128 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[725] | 129 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[587] | 130 | |
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| 131 | #==================================================== |
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[544] | 132 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 133 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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[257] | 134 | |
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| 135 | #==================================================== |
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| 136 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[615] | 137 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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[257] | 138 | |
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| 139 | #==================================================== |
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| 140 | #- Max number of arguments passed to nco operator or demigration command |
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| 141 | UNIX_MAX_LIMIT=360 |
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| 142 | |
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[650] | 143 | #- set PackDefault true on NEC front-end |
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| 144 | PackDefault=true |
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| 145 | |
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[257] | 146 | #D-#================================================== |
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[725] | 147 | #D-function IGCM_sys_ChangeArchive |
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| 148 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
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| 149 | #D-* Examples: |
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| 150 | #D- |
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| 151 | function IGCM_sys_ChangeArchive { |
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| 152 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
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| 153 | |
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[743] | 154 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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| 155 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[725] | 156 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
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| 157 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
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| 158 | |
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| 159 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
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| 160 | } |
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| 161 | |
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| 162 | #D-#================================================== |
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[257] | 163 | #D-function IGCM_sys_RshMaster |
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| 164 | #D-* Purpose: Just a fake command to wrapp |
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| 165 | #D- IGCM_card call in post-treatment |
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| 166 | #D- Ulam do not see brodie filesystem |
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| 167 | #D- Cesium do not see all mercure filesystem |
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| 168 | #D- That's why we need this hack. |
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| 169 | #D-* Examples: |
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| 170 | #D- |
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| 171 | function IGCM_sys_RshMaster { |
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[544] | 172 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 173 | /bin/ksh <<-EOF |
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[257] | 174 | export libIGCM=${libIGCM} |
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| 175 | export DEBUG_debug=${DEBUG_debug} |
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| 176 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 177 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 178 | ${@} |
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| 179 | EOF |
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[544] | 180 | if [ $? -gt 0 ] ; then |
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| 181 | echo "IGCM_sys_RshMaster : erreur." |
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| 182 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 183 | fi |
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| 184 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[257] | 185 | } |
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| 186 | |
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| 187 | #D-#================================================== |
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| 188 | #D-function IGCM_sys_RshArchive |
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| 189 | #D-* Purpose: Archive rsh command |
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| 190 | #D-* Examples: |
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| 191 | #D- |
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| 192 | function IGCM_sys_RshArchive { |
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[544] | 193 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 194 | /bin/ksh <<-EOF |
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[257] | 195 | ${@} |
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| 196 | EOF |
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[544] | 197 | if [ $? -gt 0 ] ; then |
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| 198 | echo "IGCM_sys_RshArchive : erreur." |
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| 199 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 200 | fi |
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| 201 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[257] | 202 | } |
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| 203 | |
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| 204 | #D-#================================================== |
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| 205 | #D-function IGCM_sys_RshPost |
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[343] | 206 | #D-* Purpose: Post-process rsh command |
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[257] | 207 | #D-* Examples: |
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| 208 | #D- |
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| 209 | function IGCM_sys_RshPost { |
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[544] | 210 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 211 | if ( $DEBUG_sys ) ; then |
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| 212 | echo "IGCM_sys_RshPost :" $@ |
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| 213 | fi |
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| 214 | /bin/ksh ${@} |
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| 215 | if [ $? -gt 0 ] ; then |
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| 216 | echo "IGCM_sys_RshPost : erreur." |
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| 217 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 218 | fi |
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| 219 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[257] | 220 | } |
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| 221 | |
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| 222 | #D-#================================================== |
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[442] | 223 | #D-function IGCM_sys_SendMail |
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| 224 | #D-* Purpose: Send mail when simulation is over |
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| 225 | #D-* Examples: |
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| 226 | #D- |
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| 227 | function IGCM_sys_SendMail { |
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[544] | 228 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 229 | if ( $DEBUG_sys ) ; then |
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| 230 | echo "IGCM_sys_SendMail :" $@ |
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| 231 | fi |
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[442] | 232 | |
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[544] | 233 | if ( ${ExitFlag} ) ; then |
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| 234 | status=failed |
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| 235 | else |
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| 236 | status=completed |
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| 237 | fi |
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[676] | 238 | |
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[544] | 239 | cat << END_MAIL > job_end.mail |
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[442] | 240 | Dear ${LOGIN}, |
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| 241 | |
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[452] | 242 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[442] | 243 | Job started : ${DateBegin} |
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| 244 | Job ended : ${DateEnd} |
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| 245 | Output files are available in ${R_SAVE} |
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[452] | 246 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[442] | 247 | END_MAIL |
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| 248 | |
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[544] | 249 | if [ X"${config_UserChoices_MailName}" != X ] ; then |
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| 250 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 251 | elif [ -f ~/.forward ] ; then |
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| 252 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 253 | else |
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| 254 | mailx -s "${config_UserChoices_JobName} ${status}" ${LOGIN} < job_end.mail |
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| 255 | fi |
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[442] | 256 | |
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[544] | 257 | if [ $? -gt 0 ] ; then |
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| 258 | echo "IGCM_sys_SendMail : erreur." |
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| 259 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 260 | fi |
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| 261 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[442] | 262 | } |
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| 263 | |
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| 264 | #D-#================================================== |
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[257] | 265 | #D-function IGCM_sys_Mkdir |
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| 266 | #D-* Purpose: Master locale mkdir command |
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| 267 | #D-* Examples: |
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| 268 | #D- |
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| 269 | function IGCM_sys_Mkdir { |
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[544] | 270 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 271 | if ( $DEBUG_sys ) ; then |
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| 272 | echo "IGCM_sys_Mkdir :" $@ |
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| 273 | fi |
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| 274 | if [ ! -d ${1} ]; then |
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| 275 | \mkdir -p $1 |
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| 276 | if [ $? -gt 0 ] ; then |
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| 277 | echo "IGCM_sys_Mkdir : erreur." |
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| 278 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[257] | 279 | fi |
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[544] | 280 | fi |
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| 281 | # vérification : |
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| 282 | if [ ! -d ${1} ] ; then |
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| 283 | echo "IGCM_sys_Mkdir : erreur." |
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| 284 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 285 | fi |
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| 286 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[257] | 287 | } |
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| 288 | |
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| 289 | #D-#================================================== |
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| 290 | #D-function IGCM_sys_MkdirArchive |
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| 291 | #D-* Purpose: Mkdir on Archive |
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| 292 | #D-* Examples: |
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| 293 | #D- |
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| 294 | function IGCM_sys_MkdirArchive { |
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[544] | 295 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 296 | if ( $DEBUG_sys ) ; then |
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| 297 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 298 | fi |
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| 299 | #- creation de repertoire sur le serveur fichier |
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[676] | 300 | if [ ! -d ${1} ]; then |
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[544] | 301 | \mkdir -p $1 |
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| 302 | if [ $? -gt 0 ] ; then |
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| 303 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 304 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[257] | 305 | fi |
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[544] | 306 | fi |
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| 307 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[257] | 308 | } |
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| 309 | |
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| 310 | #D-#================================================== |
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| 311 | #D-function IGCM_sys_MkdirWork |
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| 312 | #D-* Purpose: Mkdir on Work |
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| 313 | #D-* Examples: |
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| 314 | #D- |
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| 315 | function IGCM_sys_MkdirWork { |
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[544] | 316 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 317 | if ( $DEBUG_sys ) ; then |
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| 318 | echo "IGCM_sys_MkdirWork :" $@ |
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| 319 | fi |
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| 320 | #- creation de repertoire sur le serveur fichier |
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[676] | 321 | if [ ! -d ${1} ]; then |
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[544] | 322 | \mkdir -p $1 |
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| 323 | if [ $? -gt 0 ] ; then |
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| 324 | echo "IGCM_sys_MkdirWork : erreur." |
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| 325 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[257] | 326 | fi |
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[544] | 327 | fi |
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| 328 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[257] | 329 | } |
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| 330 | |
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| 331 | #D-#================================================== |
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| 332 | #D-function IGCM_sys_Cd |
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| 333 | #D-* Purpose: master cd command |
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| 334 | #D-* Examples: |
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| 335 | #D- |
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| 336 | function IGCM_sys_Cd { |
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[544] | 337 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 338 | if ( $DEBUG_sys ) ; then |
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| 339 | echo "IGCM_sys_Cd :" $@ |
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| 340 | fi |
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| 341 | \cd $1 |
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| 342 | if [ $? -gt 0 ] ; then |
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| 343 | echo "IGCM_sys_Cd : erreur." |
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| 344 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 345 | fi |
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| 346 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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[257] | 347 | } |
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| 348 | |
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| 349 | #D-#================================================== |
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| 350 | #D-function IGCM_sys_Chmod |
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| 351 | #D-* Purpose: Chmod |
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| 352 | #D-* Examples: |
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| 353 | #D- |
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| 354 | function IGCM_sys_Chmod { |
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[544] | 355 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 356 | if ( $DEBUG_sys ) ; then |
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| 357 | echo "IGCM_sys_Chmod :" $@ |
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| 358 | fi |
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| 359 | if [ $DRYRUN -le 1 ]; then |
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| 360 | \chmod $@ |
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| 361 | if [ $? -gt 0 ] ; then |
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| 362 | echo "IGCM_sys_Chmod : erreur." |
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| 363 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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[257] | 364 | fi |
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[544] | 365 | else |
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| 366 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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| 367 | fi |
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| 368 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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[257] | 369 | } |
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| 370 | |
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| 371 | #D-#================================================== |
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| 372 | #D-function IGCM_sys_FileSize |
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| 373 | #D-* Purpose: Filesize |
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| 374 | #D-* Examples: |
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| 375 | #D- |
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| 376 | function IGCM_sys_FileSize { |
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[544] | 377 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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[257] | 378 | |
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[544] | 379 | typeset sizeF |
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| 380 | set +A sizeF -- $( ls -la ${1} ) |
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| 381 | if [ $? -gt 0 ] ; then |
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| 382 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 383 | fi |
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| 384 | eval ${2}=${sizeF[4]} |
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[257] | 385 | |
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[544] | 386 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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[257] | 387 | } |
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| 388 | |
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| 389 | #D-#================================================== |
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| 390 | #D-function IGCM_sys_TestDir |
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| 391 | #D-* Purpose: Test Directory that must exists |
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| 392 | #D-* Examples: |
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| 393 | #D- |
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| 394 | function IGCM_sys_TestDir { |
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[544] | 395 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 396 | if ( $DEBUG_sys ) ; then |
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| 397 | echo "IGCM_sys_TestDir :" $@ |
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| 398 | fi |
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| 399 | typeset ExistFlag |
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| 400 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 401 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[257] | 402 | |
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[544] | 403 | return ${ExistFlag} |
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[257] | 404 | } |
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| 405 | |
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| 406 | #D-#================================================== |
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| 407 | #D-function IGCM_sys_TestDirArchive |
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| 408 | #D-* Purpose: Test Directory that must exists on Archive |
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| 409 | #D-* Examples: |
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| 410 | #D- |
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| 411 | function IGCM_sys_TestDirArchive { |
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[544] | 412 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 413 | if ( $DEBUG_sys ) ; then |
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| 414 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 415 | fi |
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| 416 | typeset ExistFlag |
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| 417 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 418 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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[257] | 419 | |
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[544] | 420 | return ${ExistFlag} |
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[257] | 421 | } |
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| 422 | |
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| 423 | #D-#================================================== |
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[548] | 424 | #D-function IGCM_sys_IsFileArchived |
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| 425 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 426 | #D-* Examples: |
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| 427 | #D- |
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| 428 | function IGCM_sys_IsFileArchived { |
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| 429 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 430 | if ( $DEBUG_sys ) ; then |
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| 431 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 432 | fi |
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| 433 | typeset IsArchivedFlag |
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[618] | 434 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
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[548] | 435 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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| 436 | |
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| 437 | return ${IsArchivedFlag} |
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| 438 | } |
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| 439 | |
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| 440 | #D-#================================================== |
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[257] | 441 | #D-function IGCM_sys_TestFileArchive |
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| 442 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 443 | #D-* Examples: |
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| 444 | #D- |
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| 445 | function IGCM_sys_TestFileArchive { |
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[544] | 446 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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| 447 | typeset ExistFlag |
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| 448 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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| 449 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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[257] | 450 | |
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[544] | 451 | return ${ExistFlag} |
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[257] | 452 | } |
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| 453 | |
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| 454 | #D-#================================================== |
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[544] | 455 | #D-function IGCM_sys_TestFileBuffer |
---|
| 456 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 457 | #D-* Examples: |
---|
| 458 | #D- |
---|
| 459 | function IGCM_sys_TestFileBuffer { |
---|
| 460 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 461 | typeset ExistFlag |
---|
| 462 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 463 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 464 | |
---|
| 465 | return ${ExistFlag} |
---|
| 466 | } |
---|
| 467 | |
---|
| 468 | #D-#================================================== |
---|
[257] | 469 | #D-function IGCM_sys_CountFileArchive |
---|
| 470 | #D-* Purpose: Count files on Archive filesystem |
---|
| 471 | #D-* Examples: |
---|
| 472 | #D- |
---|
| 473 | function IGCM_sys_CountFileArchive { |
---|
[544] | 474 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 475 | ls ${@} 2>/dev/null | wc -l |
---|
| 476 | if [ $? -gt 0 ] ; then |
---|
| 477 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 478 | fi |
---|
| 479 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[257] | 480 | } |
---|
| 481 | |
---|
| 482 | #D-#================================================== |
---|
[544] | 483 | #D-function IGCM_sys_CountFileBuffer |
---|
| 484 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 485 | #D-* Examples: |
---|
| 486 | #D- |
---|
| 487 | function IGCM_sys_CountFileBuffer { |
---|
| 488 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 489 | ls ${@} 2>/dev/null | wc -l |
---|
| 490 | if [ $? -gt 0 ] ; then |
---|
| 491 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 492 | fi |
---|
| 493 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 494 | } |
---|
| 495 | |
---|
| 496 | #D-#================================================== |
---|
[257] | 497 | #D-function IGCM_sys_Tree |
---|
| 498 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 499 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 500 | #D- |
---|
| 501 | function IGCM_sys_Tree { |
---|
[544] | 502 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 503 | if ( $DEBUG_sys ) ; then |
---|
| 504 | echo "IGCM_sys_Tree :" $@ |
---|
| 505 | fi |
---|
[257] | 506 | |
---|
[544] | 507 | \tree -f $@ |
---|
[257] | 508 | |
---|
[544] | 509 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[257] | 510 | } |
---|
| 511 | |
---|
| 512 | #D-#================================================== |
---|
| 513 | #D-function IGCM_sys_Tar |
---|
[544] | 514 | #D-* Purpose: master tar command |
---|
[257] | 515 | #D-* Examples: |
---|
| 516 | #D- |
---|
| 517 | function IGCM_sys_Tar { |
---|
[544] | 518 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 519 | if ( $DEBUG_sys ) ; then |
---|
| 520 | echo "IGCM_sys_Tar :" $@ |
---|
| 521 | fi |
---|
| 522 | \tar cf $@ |
---|
| 523 | if [ $? -gt 0 ] ; then |
---|
| 524 | echo "IGCM_sys_Tar : erreur." |
---|
| 525 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 526 | fi |
---|
| 527 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[257] | 528 | } |
---|
| 529 | |
---|
| 530 | #D-#================================================== |
---|
| 531 | #D-function IGCM_sys_UnTar |
---|
| 532 | #D-* Purpose: master un-tar command |
---|
| 533 | #D-* Examples: |
---|
| 534 | #D- |
---|
| 535 | function IGCM_sys_UnTar { |
---|
[544] | 536 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 537 | if ( $DEBUG_sys ) ; then |
---|
| 538 | echo "IGCM_sys_UnTar :" $@ |
---|
| 539 | fi |
---|
| 540 | \tar xvf $1 |
---|
| 541 | if [ $? -gt 0 ] ; then |
---|
| 542 | echo "IGCM_sys_UnTar : erreur." |
---|
| 543 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 544 | fi |
---|
| 545 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[257] | 546 | } |
---|
| 547 | |
---|
| 548 | #D-#================================================== |
---|
| 549 | #D-function IGCM_sys_QsubPost |
---|
| 550 | #D-* Purpose: Qsub new job on scalaire |
---|
| 551 | #D-* Examples: |
---|
| 552 | #D- |
---|
| 553 | function IGCM_sys_QsubPost { |
---|
[544] | 554 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 555 | if ( $DEBUG_sys ) ; then |
---|
| 556 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 557 | fi |
---|
[586] | 558 | /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} |
---|
[544] | 559 | if [ $? -gt 0 ] ; then |
---|
| 560 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 561 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 562 | fi |
---|
| 563 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[257] | 564 | } |
---|
| 565 | |
---|
| 566 | #D-************************* |
---|
[676] | 567 | #D- File transfer functions |
---|
[257] | 568 | #D-************************* |
---|
| 569 | #D- |
---|
| 570 | |
---|
| 571 | #D-#================================================== |
---|
| 572 | #D-function IGCM_sys_Rsync_out |
---|
| 573 | #D-* Purpose: treat return val of rsync |
---|
| 574 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 575 | #D- Error values and explanations can depend on your system version. |
---|
| 576 | function IGCM_sys_Rsync_out { |
---|
[719] | 577 | status=$1 |
---|
| 578 | if [ ! $status ] ; then |
---|
[544] | 579 | echo "rsync error !" |
---|
| 580 | fi |
---|
[257] | 581 | |
---|
[544] | 582 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 583 | case $status in |
---|
[544] | 584 | 0) return ;; |
---|
| 585 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 586 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 587 | return;; |
---|
| 588 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 589 | echo "Incompatibilité de protocole." |
---|
| 590 | return;; |
---|
| 591 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 592 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 593 | echo "répertoires" |
---|
| 594 | return;; |
---|
| 595 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 596 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 597 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 598 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 599 | echo "pas par le serveur a été spécifiée." |
---|
| 600 | return;; |
---|
| 601 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 602 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 603 | return;; |
---|
| 604 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 605 | echo "Erreur d'entrée sortie fichier" |
---|
| 606 | return;; |
---|
| 607 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 608 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 609 | return;; |
---|
| 610 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 611 | echo "Erreur avec les diagnostics du programme" |
---|
| 612 | return;; |
---|
| 613 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 614 | echo "Erreur dans le code IPC" |
---|
| 615 | return;; |
---|
| 616 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 617 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 618 | return;; |
---|
| 619 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 620 | echo "Une erreur retournée par waitpid()" |
---|
| 621 | return;; |
---|
| 622 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 623 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 624 | return;; |
---|
| 625 | 23) echo "" |
---|
| 626 | echo "Erreur fichier inexistant" |
---|
| 627 | return;; |
---|
| 628 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 629 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 630 | return;; |
---|
[719] | 631 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[544] | 632 | return;; |
---|
| 633 | esac |
---|
| 634 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 635 | case $status in |
---|
[676] | 636 | 0) return;; |
---|
[544] | 637 | 1) echo "rsync error : Syntax or usage error " |
---|
| 638 | return;; |
---|
| 639 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 640 | return;; |
---|
| 641 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 642 | return;; |
---|
| 643 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 644 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 645 | echo "them; or an option was specified that is supported by the client and" |
---|
| 646 | echo "not by the server." |
---|
| 647 | return;; |
---|
| 648 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 649 | return;; |
---|
| 650 | 10) echo "rsync error : Error in socket I/O " |
---|
| 651 | return;; |
---|
| 652 | 11) echo "rsync error : Error in file I/O " |
---|
| 653 | return;; |
---|
| 654 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 655 | return;; |
---|
| 656 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 657 | return;; |
---|
| 658 | 14) echo "rsync error : Error in IPC code " |
---|
| 659 | return;; |
---|
| 660 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 661 | return;; |
---|
| 662 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 663 | return;; |
---|
| 664 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 665 | return;; |
---|
| 666 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 667 | return;; |
---|
| 668 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 669 | return;; |
---|
| 670 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 671 | return;; |
---|
[719] | 672 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[544] | 673 | return;; |
---|
| 674 | esac |
---|
| 675 | else |
---|
| 676 | echo "unknown language $MYLANG." |
---|
| 677 | return |
---|
| 678 | fi |
---|
[257] | 679 | } |
---|
[544] | 680 | |
---|
[257] | 681 | #D-#================================================== |
---|
| 682 | #D-function IGCM_sys_Cp |
---|
| 683 | #D-* Purpose: generic cp |
---|
| 684 | #D-* Examples: |
---|
| 685 | #D- |
---|
| 686 | function IGCM_sys_Cp { |
---|
[544] | 687 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 688 | if ( $DEBUG_sys ) ; then |
---|
| 689 | echo "IGCM_sys_Cp :" $@ |
---|
| 690 | fi |
---|
[257] | 691 | |
---|
[717] | 692 | typeset status |
---|
[257] | 693 | |
---|
[544] | 694 | echo cp $@ > out_rsync 2>&1 |
---|
| 695 | \cp $@ >> out_rsync 2>&1 |
---|
[717] | 696 | status=$? |
---|
[257] | 697 | |
---|
[717] | 698 | if [ ${status} -gt 0 ] ; then |
---|
| 699 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[544] | 700 | cat out_rsync |
---|
| 701 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 702 | else |
---|
| 703 | \rm out_rsync |
---|
| 704 | fi |
---|
| 705 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[257] | 706 | } |
---|
| 707 | |
---|
| 708 | #D-#================================================== |
---|
| 709 | #D-function IGCM_sys_Rm |
---|
| 710 | #D-* Purpose: generic rm |
---|
| 711 | #D-* Examples: |
---|
| 712 | #D- |
---|
| 713 | function IGCM_sys_Rm { |
---|
[544] | 714 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 715 | if ( $DEBUG_sys ) ; then |
---|
| 716 | echo "IGCM_sys_Rm :" $@ |
---|
| 717 | fi |
---|
[257] | 718 | |
---|
[717] | 719 | typeset status |
---|
[257] | 720 | |
---|
[544] | 721 | echo rm $@ > out_rsync 2>&1 |
---|
| 722 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 723 | status=$? |
---|
[257] | 724 | |
---|
[717] | 725 | if [ ${status} -gt 0 ] ; then |
---|
| 726 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[544] | 727 | cat out_rsync |
---|
| 728 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 729 | else |
---|
| 730 | \rm out_rsync |
---|
| 731 | fi |
---|
| 732 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[257] | 733 | } |
---|
| 734 | |
---|
| 735 | #D-#================================================== |
---|
| 736 | #D-function IGCM_sys_RmRunDir |
---|
| 737 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 738 | #D- scheduler will do the job) |
---|
[616] | 739 | #D- Dummy function on mercure front-end |
---|
[257] | 740 | #D-* Examples: |
---|
| 741 | #D- |
---|
| 742 | function IGCM_sys_RmRunDir { |
---|
[616] | 743 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 744 | if ( $DEBUG_sys ) ; then |
---|
| 745 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 746 | echo "Dummy call, let the scheduler do that." |
---|
| 747 | fi |
---|
| 748 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[257] | 749 | } |
---|
| 750 | |
---|
| 751 | #D-#================================================== |
---|
| 752 | #D-function IGCM_sys_Mv |
---|
| 753 | #D-* Purpose: generic move |
---|
| 754 | #D-* Examples: |
---|
| 755 | #D- |
---|
| 756 | function IGCM_sys_Mv { |
---|
[544] | 757 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 758 | if ( $DEBUG_sys ) ; then |
---|
| 759 | echo "IGCM_sys_Mv :" $@ |
---|
| 760 | fi |
---|
[257] | 761 | |
---|
[544] | 762 | if [ $DRYRUN = 0 ]; then |
---|
[257] | 763 | |
---|
[717] | 764 | typeset status |
---|
[676] | 765 | |
---|
[544] | 766 | echo mv $@ > out_rsync 2>&1 |
---|
| 767 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 768 | status=$? |
---|
[676] | 769 | |
---|
[717] | 770 | if [ ${status} -gt 0 ] ; then |
---|
| 771 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[544] | 772 | cat out_rsync |
---|
| 773 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[257] | 774 | else |
---|
[544] | 775 | \rm out_rsync |
---|
[257] | 776 | fi |
---|
[544] | 777 | else |
---|
| 778 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 779 | fi |
---|
[257] | 780 | |
---|
[544] | 781 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[257] | 782 | } |
---|
| 783 | |
---|
| 784 | #D-#================================================== |
---|
| 785 | #D-function IGCM_sys_Put_Dir |
---|
| 786 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 787 | #D-* Examples: |
---|
| 788 | #D- |
---|
| 789 | function IGCM_sys_Put_Dir { |
---|
[544] | 790 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 791 | if ( $DEBUG_sys ) ; then |
---|
| 792 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 793 | fi |
---|
| 794 | if [ $DRYRUN = 0 ]; then |
---|
| 795 | if [ ! -d ${1} ] ; then |
---|
| 796 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 797 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 798 | return |
---|
[257] | 799 | fi |
---|
| 800 | |
---|
[717] | 801 | typeset status |
---|
[257] | 802 | |
---|
[544] | 803 | # Only if we use rsync |
---|
| 804 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 805 | # |
---|
| 806 | #USUAL WAY |
---|
| 807 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
[717] | 808 | status=$? |
---|
[257] | 809 | |
---|
[717] | 810 | if [ ${status} -gt 0 ] ; then |
---|
| 811 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[544] | 812 | cat out_rsync |
---|
| 813 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[257] | 814 | else |
---|
[544] | 815 | \rm out_rsync |
---|
[257] | 816 | fi |
---|
[544] | 817 | else |
---|
| 818 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 819 | fi |
---|
| 820 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[257] | 821 | } |
---|
| 822 | |
---|
| 823 | #D-#================================================== |
---|
| 824 | #D-function IGCM_sys_Get_Dir |
---|
[676] | 825 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[257] | 826 | #D-* Examples: |
---|
| 827 | #D- |
---|
| 828 | function IGCM_sys_Get_Dir { |
---|
[544] | 829 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 830 | if ( $DEBUG_sys ) ; then |
---|
| 831 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 832 | fi |
---|
| 833 | if [ $DRYRUN = 0 ]; then |
---|
[676] | 834 | # if [ ! -d ${1} ] ; then |
---|
| 835 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 836 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 837 | # return |
---|
| 838 | # fi |
---|
[257] | 839 | |
---|
[717] | 840 | typeset NB_ESSAI DELAI status i |
---|
| 841 | # number of tentative |
---|
| 842 | NB_ESSAI=3 |
---|
| 843 | # time delay between tentative |
---|
| 844 | DELAI=2 |
---|
[257] | 845 | |
---|
[544] | 846 | # Only if we use rsync |
---|
| 847 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 848 | # |
---|
[717] | 849 | # USUAL WAY |
---|
| 850 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
[713] | 851 | ccc_hsm get -r $1 |
---|
[257] | 852 | |
---|
[717] | 853 | i=0 |
---|
| 854 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 855 | \cp -ur $1 $2 >> out_rsync 2>&1 |
---|
| 856 | status=$? |
---|
| 857 | if [ ${status} -gt 0 ]; then |
---|
| 858 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 859 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 860 | sleep $DELAI |
---|
| 861 | else |
---|
| 862 | break |
---|
| 863 | fi |
---|
| 864 | (( i = i + 1 )) |
---|
| 865 | done |
---|
| 866 | |
---|
| 867 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 868 | echo "IGCM_sys_Get_Dir : error." |
---|
| 869 | cat out_rsync |
---|
| 870 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[257] | 871 | else |
---|
[544] | 872 | \rm out_rsync |
---|
[257] | 873 | fi |
---|
[544] | 874 | else |
---|
| 875 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 876 | fi |
---|
| 877 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[257] | 878 | } |
---|
| 879 | |
---|
| 880 | #D-#================================================== |
---|
| 881 | #D-function IGCM_sys_Get_Master |
---|
| 882 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 883 | #D-* Examples: |
---|
| 884 | #D- |
---|
| 885 | function IGCM_sys_Get_Master { |
---|
[544] | 886 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 887 | if ( $DEBUG_sys ) ; then |
---|
| 888 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 889 | fi |
---|
| 890 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 891 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[544] | 892 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 893 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 894 | return |
---|
[257] | 895 | fi |
---|
| 896 | |
---|
[717] | 897 | typeset NB_ESSAI DELAI status i |
---|
| 898 | # number of tentative |
---|
| 899 | NB_ESSAI=3 |
---|
| 900 | # time delay between tentative |
---|
| 901 | DELAI=2 |
---|
[257] | 902 | |
---|
[717] | 903 | i=0 |
---|
| 904 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 905 | \cp -urL $1 $2 > out_rsync 2>&1 |
---|
| 906 | status=$? |
---|
| 907 | if [ ${status} -gt 0 ]; then |
---|
| 908 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 909 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 910 | sleep $DELAI |
---|
| 911 | else |
---|
| 912 | break |
---|
| 913 | fi |
---|
| 914 | (( i = i + 1 )) |
---|
| 915 | done |
---|
[257] | 916 | |
---|
[717] | 917 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 918 | echo "IGCM_sys_Get_Master : error." |
---|
| 919 | cat out_rsync |
---|
| 920 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[257] | 921 | else |
---|
[544] | 922 | \rm out_rsync |
---|
[257] | 923 | fi |
---|
[544] | 924 | else |
---|
| 925 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 926 | fi |
---|
| 927 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[257] | 928 | } |
---|
| 929 | |
---|
| 930 | #D-#================================================== |
---|
[442] | 931 | #D-function IGCM_sys_Put_Rest |
---|
[544] | 932 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[442] | 933 | #D- File and target directory must exist. |
---|
| 934 | #D-* Examples: |
---|
| 935 | #D- |
---|
| 936 | function IGCM_sys_Put_Rest { |
---|
[544] | 937 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 938 | if ( $DEBUG_sys ) ; then |
---|
| 939 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 940 | fi |
---|
| 941 | if [ $DRYRUN = 0 ]; then |
---|
| 942 | if [ ! -f ${1} ] ; then |
---|
| 943 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 944 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[442] | 945 | fi |
---|
| 946 | |
---|
[717] | 947 | typeset status |
---|
[544] | 948 | # |
---|
| 949 | if [ X${JobType} = XRUN ] ; then |
---|
| 950 | IGCM_sys_Chmod 444 ${1} |
---|
| 951 | fi |
---|
[442] | 952 | |
---|
[544] | 953 | # |
---|
| 954 | # USUAL WAY |
---|
| 955 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 956 | status=$? |
---|
[544] | 957 | |
---|
[676] | 958 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 959 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 960 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[442] | 961 | |
---|
[676] | 962 | # #RSYNC WITH NFS USE |
---|
| 963 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 964 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[442] | 965 | |
---|
[717] | 966 | # status=$? |
---|
| 967 | # IGCM_sys_Rsync_out $status |
---|
[442] | 968 | |
---|
[676] | 969 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[717] | 970 | # (( status=status+$? )) |
---|
[442] | 971 | |
---|
[717] | 972 | if [ ${status} -gt 0 ] ; then |
---|
| 973 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[544] | 974 | cat out_rsync |
---|
| 975 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[442] | 976 | else |
---|
[544] | 977 | \rm out_rsync |
---|
[442] | 978 | fi |
---|
[544] | 979 | else |
---|
| 980 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 981 | fi |
---|
| 982 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[442] | 983 | } |
---|
| 984 | |
---|
| 985 | #D-#================================================== |
---|
[544] | 986 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 987 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 988 | #D- File and target directory must exist. |
---|
| 989 | #D-* Examples: |
---|
| 990 | #D- |
---|
| 991 | function IGCM_sys_PutBuffer_Rest { |
---|
| 992 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 993 | if ( $DEBUG_sys ) ; then |
---|
| 994 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 995 | fi |
---|
| 996 | if [ $DRYRUN = 0 ]; then |
---|
| 997 | if [ ! -f ${1} ] ; then |
---|
| 998 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 999 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1000 | fi |
---|
| 1001 | |
---|
[717] | 1002 | typeset status |
---|
[544] | 1003 | # |
---|
| 1004 | if [ X${JobType} = XRUN ] ; then |
---|
| 1005 | IGCM_sys_Chmod 444 ${1} |
---|
| 1006 | fi |
---|
| 1007 | |
---|
| 1008 | # |
---|
| 1009 | # USUAL WAY |
---|
| 1010 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1011 | status=$? |
---|
[544] | 1012 | |
---|
[717] | 1013 | if [ ${status} -gt 0 ] ; then |
---|
| 1014 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[544] | 1015 | cat out_rsync |
---|
| 1016 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1017 | else |
---|
| 1018 | \rm out_rsync |
---|
| 1019 | fi |
---|
| 1020 | else |
---|
| 1021 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1022 | fi |
---|
| 1023 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1024 | } |
---|
| 1025 | |
---|
| 1026 | #D-#================================================== |
---|
[801] | 1027 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1028 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1029 | #D-* Examples: |
---|
| 1030 | #D- |
---|
| 1031 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1032 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 1033 | echo $1 |
---|
| 1034 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1035 | } |
---|
| 1036 | |
---|
| 1037 | #D-#================================================== |
---|
[257] | 1038 | #D-function IGCM_sys_Put_Out |
---|
[544] | 1039 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[257] | 1040 | #D-* Examples: |
---|
| 1041 | #D- |
---|
| 1042 | function IGCM_sys_Put_Out { |
---|
[544] | 1043 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1044 | if ( $DEBUG_sys ) ; then |
---|
| 1045 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1046 | fi |
---|
[676] | 1047 | |
---|
[710] | 1048 | typeset NB_ESSAI DELAI status i exist skip |
---|
[676] | 1049 | |
---|
| 1050 | # number of tentative |
---|
| 1051 | NB_ESSAI=3 |
---|
| 1052 | # time delay between tentative |
---|
| 1053 | DELAI=2 |
---|
| 1054 | |
---|
[544] | 1055 | if [ $DRYRUN = 0 ]; then |
---|
| 1056 | if [ ! -f ${1} ] ; then |
---|
| 1057 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1058 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1059 | return 1 |
---|
[257] | 1060 | fi |
---|
[544] | 1061 | # |
---|
| 1062 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1063 | # |
---|
[520] | 1064 | |
---|
[544] | 1065 | #===================================================== |
---|
| 1066 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1067 | #===================================================== |
---|
[520] | 1068 | |
---|
[544] | 1069 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1070 | #if [ $? -eq 0 ] ; then |
---|
| 1071 | # typeset WORKPATH FILEPATH |
---|
| 1072 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
[676] | 1073 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
[544] | 1074 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1075 | # # |
---|
| 1076 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1077 | #fi |
---|
[520] | 1078 | |
---|
[544] | 1079 | if [ X${JobType} = XRUN ] ; then |
---|
| 1080 | if [ X${3} = X ] ; then |
---|
[676] | 1081 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1082 | fi |
---|
| 1083 | fi |
---|
[676] | 1084 | # |
---|
[257] | 1085 | |
---|
[544] | 1086 | exist=false |
---|
| 1087 | skip=false |
---|
| 1088 | if [ -f $2 ] ; then |
---|
| 1089 | IGCM_debug_Print 1 "$2 already exist" |
---|
[587] | 1090 | #dmget $2 |
---|
| 1091 | ccc_hsm get $2 |
---|
[544] | 1092 | exist=true |
---|
| 1093 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
[676] | 1094 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1095 | skip=true |
---|
[544] | 1096 | else |
---|
[676] | 1097 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1098 | skip=false |
---|
[544] | 1099 | fi |
---|
| 1100 | fi |
---|
[676] | 1101 | # |
---|
[544] | 1102 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1103 | IGCM_sys_Chmod u+w $2 |
---|
| 1104 | fi |
---|
[676] | 1105 | |
---|
[544] | 1106 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1107 | i=0 |
---|
[676] | 1108 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1109 | # USUAL WAY |
---|
| 1110 | \cp $1 $2 > out_rsync 2>&1 |
---|
[710] | 1111 | status=$? |
---|
| 1112 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1113 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1114 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
| 1115 | sleep $DELAI |
---|
| 1116 | else |
---|
| 1117 | break |
---|
| 1118 | fi |
---|
| 1119 | (( i = i + 1 )) |
---|
| 1120 | done |
---|
[544] | 1121 | fi |
---|
[358] | 1122 | |
---|
[676] | 1123 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1124 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1125 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[257] | 1126 | |
---|
[676] | 1127 | # #RSYNC WITH NFS USE |
---|
| 1128 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1129 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[257] | 1130 | |
---|
[710] | 1131 | # status=$? |
---|
| 1132 | # IGCM_sys_Rsync_out $status |
---|
[257] | 1133 | |
---|
[676] | 1134 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[710] | 1135 | # (( status=status+$? )) |
---|
[257] | 1136 | |
---|
[710] | 1137 | if [ ${status} -gt 0 ] ; then |
---|
[676] | 1138 | echo "IGCM_sys_Put_Out : error." |
---|
| 1139 | cat out_rsync |
---|
| 1140 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 1141 | else |
---|
| 1142 | \rm out_rsync |
---|
| 1143 | fi |
---|
[544] | 1144 | else |
---|
| 1145 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1146 | fi |
---|
| 1147 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1148 | return 0 |
---|
| 1149 | } |
---|
| 1150 | |
---|
| 1151 | #D-#================================================== |
---|
| 1152 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1153 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1154 | #D-* Examples: |
---|
| 1155 | #D- |
---|
| 1156 | function IGCM_sys_PutBuffer_Out { |
---|
| 1157 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1158 | if ( $DEBUG_sys ) ; then |
---|
| 1159 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1160 | fi |
---|
[710] | 1161 | |
---|
| 1162 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1163 | |
---|
| 1164 | # number of tentative |
---|
| 1165 | NB_ESSAI=3 |
---|
| 1166 | # time delay between tentative |
---|
| 1167 | DELAI=2 |
---|
| 1168 | |
---|
[544] | 1169 | if [ $DRYRUN = 0 ]; then |
---|
| 1170 | if [ ! -f ${1} ] ; then |
---|
| 1171 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1172 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1173 | return 1 |
---|
| 1174 | fi |
---|
| 1175 | # |
---|
| 1176 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1177 | # |
---|
| 1178 | |
---|
| 1179 | if [ X${JobType} = XRUN ] ; then |
---|
| 1180 | if [ X${3} = X ] ; then |
---|
[676] | 1181 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1182 | fi |
---|
| 1183 | fi |
---|
[710] | 1184 | |
---|
| 1185 | exist=false |
---|
| 1186 | skip=false |
---|
| 1187 | if [ -f $2 ] ; then |
---|
| 1188 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1189 | exist=true |
---|
| 1190 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1191 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1192 | skip=true |
---|
| 1193 | else |
---|
| 1194 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1195 | skip=false |
---|
| 1196 | fi |
---|
| 1197 | fi |
---|
[544] | 1198 | # |
---|
[710] | 1199 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1200 | IGCM_sys_Chmod u+w $2 |
---|
| 1201 | fi |
---|
[705] | 1202 | |
---|
[710] | 1203 | if [ X${skip} = Xfalse ] ; then |
---|
| 1204 | i=0 |
---|
| 1205 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1206 | # USUAL WAY |
---|
| 1207 | #\cp $1 $2 > out_rsync 2>&1 |
---|
| 1208 | \mv $1 $2 > out_rsync 2>&1 |
---|
| 1209 | status=$? |
---|
| 1210 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1211 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[710] | 1212 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 1213 | sleep $DELAI |
---|
| 1214 | else |
---|
| 1215 | break |
---|
| 1216 | fi |
---|
| 1217 | (( i = i + 1 )) |
---|
| 1218 | done |
---|
| 1219 | fi |
---|
[544] | 1220 | |
---|
[710] | 1221 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1222 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1223 | cat out_rsync |
---|
| 1224 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
[257] | 1225 | else |
---|
[544] | 1226 | \rm out_rsync |
---|
[257] | 1227 | fi |
---|
[544] | 1228 | else |
---|
| 1229 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1230 | fi |
---|
| 1231 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1232 | return 0 |
---|
[257] | 1233 | } |
---|
| 1234 | |
---|
| 1235 | #D-#================================================== |
---|
| 1236 | #D-function IGCM_sys_Get |
---|
| 1237 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1238 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1239 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1240 | function IGCM_sys_Get { |
---|
[544] | 1241 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[257] | 1242 | |
---|
[719] | 1243 | typeset DEST dm_liste ifile target file_work |
---|
[676] | 1244 | typeset NB_ESSAI DELAI status i |
---|
[257] | 1245 | |
---|
[544] | 1246 | if ( $DEBUG_sys ) ; then |
---|
| 1247 | echo "IGCM_sys_Get :" $@ |
---|
| 1248 | fi |
---|
[676] | 1249 | |
---|
| 1250 | # number of tentative |
---|
| 1251 | NB_ESSAI=3 |
---|
| 1252 | # time delay between tentative |
---|
| 1253 | DELAI=2 |
---|
| 1254 | |
---|
[544] | 1255 | if [ $DRYRUN -le 2 ]; then |
---|
| 1256 | if [ X${1} = X'/l' ] ; then |
---|
| 1257 | # test if the first file is present in the old computation : |
---|
| 1258 | eval set +A dm_liste \${${2}} |
---|
| 1259 | else |
---|
| 1260 | eval set +A dm_liste ${1} |
---|
[257] | 1261 | fi |
---|
[544] | 1262 | eval DEST=\${${#}} |
---|
[257] | 1263 | |
---|
[544] | 1264 | #===================================================== |
---|
| 1265 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1266 | #===================================================== |
---|
[257] | 1267 | |
---|
[544] | 1268 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1269 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1270 | #if [ $? -eq 0 ] ; then |
---|
| 1271 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1272 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1273 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1274 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1275 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1276 | # return |
---|
| 1277 | # fi |
---|
| 1278 | #fi |
---|
[257] | 1279 | |
---|
[587] | 1280 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1281 | status=$? |
---|
| 1282 | if [ ${status} -gt 0 ] ; then |
---|
| 1283 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[544] | 1284 | cat out_rsync |
---|
| 1285 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1286 | fi |
---|
[257] | 1287 | |
---|
[717] | 1288 | #if [ ${status} -gt 0 ] ; then |
---|
[544] | 1289 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1290 | # cat out_rsync |
---|
| 1291 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1292 | # sleep 30 |
---|
| 1293 | # echo "We try another time" |
---|
[587] | 1294 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1295 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1296 | # status=$? |
---|
| 1297 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1298 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1299 | # cat out_rsync |
---|
| 1300 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[544] | 1301 | # fi |
---|
| 1302 | # else |
---|
| 1303 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1304 | # cat out_rsync |
---|
| 1305 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1306 | # fi |
---|
| 1307 | #fi |
---|
[520] | 1308 | |
---|
[719] | 1309 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1310 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1311 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1312 | |
---|
| 1313 | # #RSYNC WITH NFS USE |
---|
| 1314 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1315 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1316 | |
---|
| 1317 | # status=$? |
---|
| 1318 | # IGCM_sys_Rsync_out $status |
---|
| 1319 | |
---|
| 1320 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1321 | # (( status=status+$? )) |
---|
| 1322 | |
---|
[544] | 1323 | #USUAL WAY |
---|
| 1324 | if [ X${1} = X'/l' ] ; then |
---|
| 1325 | for target in ${dm_liste[*]} ; do |
---|
[676] | 1326 | local_file=$( basename ${target} ) |
---|
| 1327 | # test if the target file is present before the loop |
---|
| 1328 | IGCM_sys_TestFileArchive ${target} |
---|
[717] | 1329 | status=$? |
---|
| 1330 | if [ ${status} -gt 0 ] ; then |
---|
[705] | 1331 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[676] | 1332 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1333 | else |
---|
[719] | 1334 | i=0 |
---|
[676] | 1335 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1336 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1337 | status=$? |
---|
| 1338 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1339 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1340 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1341 | sleep $DELAI |
---|
| 1342 | else |
---|
| 1343 | break |
---|
| 1344 | fi |
---|
| 1345 | (( i = i + 1 )) |
---|
| 1346 | done |
---|
[719] | 1347 | if [ ${status} -gt 0 ] ; then |
---|
| 1348 | echo "IGCM_sys_Get : error" |
---|
| 1349 | cat out_rsync |
---|
| 1350 | \rm out_rsync |
---|
| 1351 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1352 | else |
---|
| 1353 | \rm out_rsync |
---|
| 1354 | fi |
---|
[676] | 1355 | fi |
---|
[544] | 1356 | done |
---|
| 1357 | else |
---|
[719] | 1358 | i=0 |
---|
| 1359 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1360 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1361 | status=$? |
---|
| 1362 | if [ ${status} -gt 0 ]; then |
---|
| 1363 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1364 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1365 | sleep $DELAI |
---|
| 1366 | else |
---|
| 1367 | break |
---|
| 1368 | fi |
---|
| 1369 | (( i = i + 1 )) |
---|
| 1370 | done |
---|
| 1371 | if [ ${status} -gt 0 ] ; then |
---|
| 1372 | echo "IGCM_sys_Get : error" |
---|
| 1373 | cat out_rsync |
---|
| 1374 | \rm out_rsync |
---|
| 1375 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1376 | else |
---|
| 1377 | \rm out_rsync |
---|
| 1378 | fi |
---|
[544] | 1379 | fi |
---|
| 1380 | else |
---|
| 1381 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1382 | fi |
---|
| 1383 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[257] | 1384 | } |
---|
| 1385 | |
---|
| 1386 | #D-#================================================== |
---|
[544] | 1387 | #D-function IGCM_sys_GetBuffer |
---|
| 1388 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1389 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1390 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1391 | function IGCM_sys_GetBuffer { |
---|
| 1392 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1393 | |
---|
[719] | 1394 | typeset DEST buf_liste ifile target file_work |
---|
| 1395 | typeset NB_ESSAI DELAI status i |
---|
[544] | 1396 | |
---|
| 1397 | if ( $DEBUG_sys ) ; then |
---|
| 1398 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1399 | fi |
---|
[719] | 1400 | |
---|
| 1401 | # number of tentative |
---|
| 1402 | NB_ESSAI=3 |
---|
| 1403 | # time delay between tentative |
---|
| 1404 | DELAI=2 |
---|
| 1405 | |
---|
[544] | 1406 | if [ $DRYRUN -le 2 ]; then |
---|
| 1407 | if [ X${1} = X'/l' ] ; then |
---|
| 1408 | # test if the first file is present in the old computation : |
---|
| 1409 | eval set +A buf_liste \${${2}} |
---|
| 1410 | else |
---|
| 1411 | eval set +A buf_liste ${1} |
---|
| 1412 | fi |
---|
| 1413 | eval DEST=\${${#}} |
---|
| 1414 | |
---|
| 1415 | #USUAL WAY |
---|
| 1416 | if [ X${1} = X'/l' ] ; then |
---|
| 1417 | for target in ${buf_liste[*]} ; do |
---|
[676] | 1418 | local_file=$( basename ${target} ) |
---|
[719] | 1419 | i=0 |
---|
| 1420 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1421 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1422 | status=$? |
---|
| 1423 | if [ ${status} -gt 0 ]; then |
---|
| 1424 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1425 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1426 | sleep $DELAI |
---|
| 1427 | else |
---|
| 1428 | break |
---|
| 1429 | fi |
---|
| 1430 | (( i = i + 1 )) |
---|
| 1431 | done |
---|
| 1432 | if [ ${status} -gt 0 ] ; then |
---|
| 1433 | echo "IGCM_sys_Get : error" |
---|
| 1434 | cat out_rsync |
---|
| 1435 | \rm out_rsync |
---|
| 1436 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1437 | else |
---|
| 1438 | \rm out_rsync |
---|
| 1439 | fi |
---|
[544] | 1440 | done |
---|
| 1441 | else |
---|
[719] | 1442 | i=0 |
---|
| 1443 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1444 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1445 | status=$? |
---|
| 1446 | if [ ${status} -gt 0 ]; then |
---|
| 1447 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1448 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1449 | sleep $DELAI |
---|
| 1450 | else |
---|
| 1451 | break |
---|
| 1452 | fi |
---|
| 1453 | (( i = i + 1 )) |
---|
| 1454 | done |
---|
| 1455 | if [ ${status} -gt 0 ] ; then |
---|
| 1456 | echo "IGCM_sys_Get : error" |
---|
| 1457 | cat out_rsync |
---|
| 1458 | \rm out_rsync |
---|
| 1459 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1460 | else |
---|
| 1461 | \rm out_rsync |
---|
| 1462 | fi |
---|
[544] | 1463 | fi |
---|
| 1464 | else |
---|
| 1465 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1466 | fi |
---|
| 1467 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1468 | } |
---|
| 1469 | |
---|
| 1470 | #D-#================================================== |
---|
| 1471 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1472 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1473 | #D-* Examples: |
---|
| 1474 | #D- |
---|
| 1475 | function IGCM_sys_GetDate_FichWork { |
---|
| 1476 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1477 | if ( $DEBUG_sys ) ; then |
---|
| 1478 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1479 | fi |
---|
| 1480 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1481 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1482 | } |
---|
| 1483 | |
---|
| 1484 | #D-#================================================== |
---|
| 1485 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[676] | 1486 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[544] | 1487 | #D-* Examples: |
---|
| 1488 | #D- |
---|
| 1489 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1490 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1491 | if ( $DEBUG_sys ) ; then |
---|
| 1492 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1493 | fi |
---|
| 1494 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1495 | } |
---|
| 1496 | |
---|
| 1497 | #D-#================================================== |
---|
[343] | 1498 | #D-function IGCM_sys_Dods_Rm |
---|
[676] | 1499 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
[343] | 1500 | #D-* Examples: |
---|
| 1501 | #D- |
---|
| 1502 | function IGCM_sys_Dods_Rm { |
---|
[544] | 1503 | if ( $DEBUG_sys ) ; then |
---|
| 1504 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1505 | fi |
---|
[717] | 1506 | typeset status |
---|
[544] | 1507 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1508 | |
---|
| 1509 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1510 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1511 | # echo "Nothing has been done." |
---|
| 1512 | # return |
---|
| 1513 | # fi |
---|
| 1514 | |
---|
[649] | 1515 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[717] | 1516 | status=$? |
---|
[676] | 1517 | |
---|
[717] | 1518 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1519 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1520 | # cat out_dods_rm |
---|
| 1521 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
[418] | 1522 | # else |
---|
[676] | 1523 | # rm out_dods_rm |
---|
[418] | 1524 | # fi |
---|
| 1525 | |
---|
[544] | 1526 | else |
---|
| 1527 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1528 | fi |
---|
[717] | 1529 | return $status |
---|
[343] | 1530 | } |
---|
| 1531 | |
---|
| 1532 | #D-#================================================== |
---|
| 1533 | #D-function IGCM_sys_Dods_Cp |
---|
| 1534 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1535 | #D-* Examples: |
---|
| 1536 | #D- |
---|
| 1537 | function IGCM_sys_Dods_Cp { |
---|
[544] | 1538 | if ( $DEBUG_sys ) ; then |
---|
| 1539 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1540 | fi |
---|
[717] | 1541 | typeset status |
---|
[544] | 1542 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1543 | |
---|
| 1544 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1545 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1546 | # echo "Nothing has been done." |
---|
| 1547 | # return |
---|
| 1548 | # fi |
---|
| 1549 | |
---|
[649] | 1550 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[717] | 1551 | status=$? |
---|
[544] | 1552 | |
---|
[717] | 1553 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1554 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1555 | # cat out_dods_cp |
---|
| 1556 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1557 | # else |
---|
| 1558 | # rm out_dods_cp |
---|
| 1559 | # fi |
---|
[418] | 1560 | |
---|
[544] | 1561 | else |
---|
| 1562 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1563 | fi |
---|
[717] | 1564 | return $status |
---|
[343] | 1565 | } |
---|
| 1566 | |
---|
| 1567 | #D-#================================================== |
---|
[257] | 1568 | #D-function IGCM_sys_Put_Dods |
---|
| 1569 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1570 | #D-* Examples: |
---|
| 1571 | #D- |
---|
| 1572 | function IGCM_sys_Put_Dods { |
---|
[544] | 1573 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1574 | if ( $DEBUG_sys ) ; then |
---|
| 1575 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1576 | fi |
---|
[717] | 1577 | #set -vx |
---|
| 1578 | typeset status |
---|
[544] | 1579 | if [ $DRYRUN = 0 ]; then |
---|
[587] | 1580 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1581 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1582 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1583 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
[544] | 1584 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1585 | return |
---|
[257] | 1586 | fi |
---|
| 1587 | |
---|
[587] | 1588 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1589 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1590 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1591 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1592 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1593 | return |
---|
| 1594 | fi |
---|
| 1595 | # |
---|
| 1596 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1597 | cd ${R_SAVE} |
---|
| 1598 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1599 | cd ${R_FIGR} |
---|
| 1600 | fi |
---|
| 1601 | |
---|
[544] | 1602 | IGCM_sys_Dods_Rm ${1} |
---|
| 1603 | IGCM_sys_Dods_Cp ${1} |
---|
[717] | 1604 | status=0 |
---|
[676] | 1605 | |
---|
[717] | 1606 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1607 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1608 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
[257] | 1609 | fi |
---|
[544] | 1610 | else |
---|
| 1611 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1612 | fi |
---|
| 1613 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[257] | 1614 | } |
---|
| 1615 | |
---|
| 1616 | ############################################################## |
---|
| 1617 | # REBUILD OPERATOR |
---|
| 1618 | |
---|
| 1619 | function IGCM_sys_rebuild { |
---|
[544] | 1620 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1621 | if ( $DEBUG_sys ) ; then |
---|
| 1622 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1623 | fi |
---|
[717] | 1624 | |
---|
[734] | 1625 | typeset NB_ESSAI DELAI status i firstArg |
---|
[717] | 1626 | # number of tentative |
---|
| 1627 | NB_ESSAI=3 |
---|
| 1628 | # time delay between tentative |
---|
| 1629 | DELAI=2 |
---|
| 1630 | |
---|
| 1631 | i=0 |
---|
| 1632 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[719] | 1633 | /home/cont003/p86ipsl/X86_64/bin/rebuild -f -o $@ > out_rsync 2>&1 |
---|
[717] | 1634 | status=$? |
---|
| 1635 | if [ ${status} -gt 0 ] ; then |
---|
| 1636 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1637 | cat out_rsync |
---|
| 1638 | \rm out_rsync |
---|
| 1639 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1640 | firstArg=${1} |
---|
| 1641 | \rm ${firstArg} |
---|
[733] | 1642 | sleep $DELAI |
---|
[717] | 1643 | else |
---|
| 1644 | \rm out_rsync |
---|
| 1645 | break |
---|
| 1646 | fi |
---|
| 1647 | (( i = i + 1 )) |
---|
| 1648 | done |
---|
| 1649 | |
---|
[725] | 1650 | if [ ${status} -gt 0 ] ; then |
---|
[717] | 1651 | echo "IGCM_sys_rebuild : rebuild error" |
---|
[544] | 1652 | IGCM_debug_Exit "rebuild" |
---|
| 1653 | fi |
---|
[257] | 1654 | |
---|
[544] | 1655 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[257] | 1656 | } |
---|
| 1657 | |
---|
[693] | 1658 | function IGCM_sys_rebuild_station { |
---|
| 1659 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
[695] | 1660 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
[693] | 1661 | if ( $DEBUG_sys ) ; then |
---|
| 1662 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1663 | fi |
---|
| 1664 | list_opt=$@ |
---|
| 1665 | |
---|
| 1666 | # Invert Axis : t,x -> x,t |
---|
| 1667 | # t,pres,x -> x,t,pres |
---|
| 1668 | # So that we can concatenate along x |
---|
| 1669 | i=0 |
---|
| 1670 | for file_in in ${list_opt} ; do |
---|
| 1671 | (( i = i + 1)) |
---|
| 1672 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1673 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1674 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1675 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1676 | done |
---|
| 1677 | |
---|
| 1678 | # Concatenate |
---|
[695] | 1679 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
[693] | 1680 | |
---|
| 1681 | # Re-ivert file |
---|
| 1682 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1683 | |
---|
[694] | 1684 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1685 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1686 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1687 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1688 | # BEGIN reordering |
---|
| 1689 | |
---|
| 1690 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1691 | # We isolate this in the code below: |
---|
| 1692 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1693 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1694 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1695 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1696 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1697 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1698 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1699 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1700 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1701 | # typeset -Z4 j4 |
---|
| 1702 | # typeset -Z3 j3 |
---|
| 1703 | |
---|
| 1704 | # unset list_opt |
---|
| 1705 | # set +A list_opt $@ |
---|
| 1706 | |
---|
| 1707 | # Filename after rebuild |
---|
| 1708 | # file_out=${list_opt[0]} |
---|
| 1709 | # Prefix of output files |
---|
| 1710 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1711 | # Number of procs |
---|
| 1712 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1713 | |
---|
| 1714 | # iProc=0 |
---|
| 1715 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1716 | # Array containing Station as a number |
---|
| 1717 | # unset proc_stn |
---|
| 1718 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1719 | # Number of stations produced by processor proc |
---|
| 1720 | # stationLast=${#proc_stn[*]} |
---|
| 1721 | # Proc number on 4 digits |
---|
| 1722 | # j4=${iProc} |
---|
| 1723 | # Init |
---|
| 1724 | # iStation=0 |
---|
| 1725 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1726 | # Station number on 3 digits |
---|
| 1727 | # j3=${proc_stn[${iStation}]} |
---|
| 1728 | # Extract station |
---|
| 1729 | # Invert Axis : t,x -> x,t |
---|
| 1730 | # t,pres,x -> x,t,pres |
---|
| 1731 | # So that we can concatenate along x |
---|
| 1732 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1733 | # (( iStation = iStation + 1 )) |
---|
| 1734 | # done |
---|
| 1735 | # (( iProc = iProc + 1 )) |
---|
| 1736 | # done |
---|
| 1737 | |
---|
| 1738 | # Concatenate all station along x |
---|
| 1739 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1740 | |
---|
| 1741 | # Re-invert file |
---|
| 1742 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1743 | |
---|
| 1744 | # END reordering |
---|
| 1745 | |
---|
[693] | 1746 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1747 | } |
---|
| 1748 | |
---|
[651] | 1749 | ############################################################ |
---|
| 1750 | # Check of space available on temporary filesytems |
---|
| 1751 | function IGCM_sys_check_quota { |
---|
| 1752 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1753 | if ( $DEBUG_sys ) ; then |
---|
| 1754 | echo "IGCM_sys_check_quota" |
---|
| 1755 | fi |
---|
| 1756 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1757 | } |
---|
| 1758 | |
---|
[257] | 1759 | ############################################################## |
---|
| 1760 | # NCO OPERATOR |
---|
| 1761 | |
---|
[377] | 1762 | function IGCM_sys_ncap2 { |
---|
[544] | 1763 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1764 | if ( $DEBUG_sys ) ; then |
---|
| 1765 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1766 | fi |
---|
[714] | 1767 | |
---|
| 1768 | typeset NB_ESSAI DELAI status i |
---|
| 1769 | # number of tentative |
---|
| 1770 | NB_ESSAI=3 |
---|
| 1771 | # time delay between tentative |
---|
| 1772 | DELAI=2 |
---|
| 1773 | |
---|
| 1774 | i=0 |
---|
| 1775 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1776 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 1777 | status=$? |
---|
| 1778 | if [ ${status} -gt 0 ] ; then |
---|
| 1779 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 1780 | cat out_rsync |
---|
| 1781 | \rm out_rsync |
---|
| 1782 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1783 | sleep $DELAI |
---|
[714] | 1784 | else |
---|
| 1785 | \rm out_rsync |
---|
| 1786 | break |
---|
| 1787 | fi |
---|
| 1788 | (( i = i + 1 )) |
---|
| 1789 | done |
---|
| 1790 | |
---|
| 1791 | if [ ${status} -gt 0 ] ; then |
---|
| 1792 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 1793 | IGCM_debug_Exit "ncap2" |
---|
[544] | 1794 | fi |
---|
[257] | 1795 | |
---|
[544] | 1796 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
[257] | 1797 | } |
---|
| 1798 | |
---|
[375] | 1799 | function IGCM_sys_ncatted { |
---|
[544] | 1800 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1801 | if ( $DEBUG_sys ) ; then |
---|
| 1802 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1803 | fi |
---|
[714] | 1804 | |
---|
| 1805 | typeset NB_ESSAI DELAI status i |
---|
| 1806 | # number of tentative |
---|
| 1807 | NB_ESSAI=3 |
---|
| 1808 | # time delay between tentative |
---|
| 1809 | DELAI=2 |
---|
| 1810 | |
---|
| 1811 | i=0 |
---|
| 1812 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1813 | ncatted "$@" > out_rsync 2>&1 |
---|
| 1814 | status=$? |
---|
| 1815 | if [ ${status} -gt 0 ] ; then |
---|
| 1816 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 1817 | cat out_rsync |
---|
| 1818 | \rm out_rsync |
---|
| 1819 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1820 | sleep $DELAI |
---|
[714] | 1821 | else |
---|
| 1822 | \rm out_rsync |
---|
| 1823 | break |
---|
| 1824 | fi |
---|
| 1825 | (( i = i + 1 )) |
---|
| 1826 | done |
---|
| 1827 | |
---|
| 1828 | if [ ${status} -gt 0 ] ; then |
---|
| 1829 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 1830 | IGCM_debug_Exit "ncatted" |
---|
[544] | 1831 | fi |
---|
[257] | 1832 | |
---|
[544] | 1833 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[375] | 1834 | } |
---|
[257] | 1835 | |
---|
| 1836 | function IGCM_sys_ncbo { |
---|
[544] | 1837 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1838 | if ( $DEBUG_sys ) ; then |
---|
| 1839 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1840 | fi |
---|
[714] | 1841 | |
---|
| 1842 | typeset NB_ESSAI DELAI status i |
---|
| 1843 | # number of tentative |
---|
| 1844 | NB_ESSAI=3 |
---|
| 1845 | # time delay between tentative |
---|
| 1846 | DELAI=2 |
---|
| 1847 | |
---|
| 1848 | i=0 |
---|
| 1849 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1850 | ncbo $@ > out_rsync 2>&1 |
---|
| 1851 | status=$? |
---|
| 1852 | if [ ${status} -gt 0 ] ; then |
---|
| 1853 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 1854 | cat out_rsync |
---|
| 1855 | \rm out_rsync |
---|
| 1856 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1857 | sleep $DELAI |
---|
[714] | 1858 | else |
---|
| 1859 | \rm out_rsync |
---|
| 1860 | break |
---|
| 1861 | fi |
---|
| 1862 | (( i = i + 1 )) |
---|
| 1863 | done |
---|
| 1864 | |
---|
| 1865 | if [ ${status} -gt 0 ] ; then |
---|
| 1866 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 1867 | IGCM_debug_Exit "ncbo" |
---|
[544] | 1868 | fi |
---|
[257] | 1869 | |
---|
[544] | 1870 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[257] | 1871 | } |
---|
| 1872 | |
---|
| 1873 | function IGCM_sys_ncdiff { |
---|
[544] | 1874 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1875 | if ( $DEBUG_sys ) ; then |
---|
| 1876 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1877 | fi |
---|
[714] | 1878 | |
---|
| 1879 | typeset NB_ESSAI DELAI status i |
---|
| 1880 | # number of tentative |
---|
| 1881 | NB_ESSAI=3 |
---|
| 1882 | # time delay between tentative |
---|
| 1883 | DELAI=2 |
---|
| 1884 | |
---|
| 1885 | i=0 |
---|
| 1886 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1887 | ncdiff $@ > out_rsync 2>&1 |
---|
| 1888 | status=$? |
---|
| 1889 | if [ ${status} -gt 0 ] ; then |
---|
| 1890 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 1891 | cat out_rsync |
---|
| 1892 | \rm out_rsync |
---|
| 1893 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1894 | sleep $DELAI |
---|
[714] | 1895 | else |
---|
| 1896 | \rm out_rsync |
---|
| 1897 | break |
---|
| 1898 | fi |
---|
| 1899 | (( i = i + 1 )) |
---|
| 1900 | done |
---|
| 1901 | |
---|
| 1902 | if [ ${status} -gt 0 ] ; then |
---|
| 1903 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 1904 | IGCM_debug_Exit "ncdiff" |
---|
[544] | 1905 | fi |
---|
[257] | 1906 | |
---|
[544] | 1907 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[257] | 1908 | } |
---|
| 1909 | |
---|
| 1910 | function IGCM_sys_ncea { |
---|
[544] | 1911 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 1912 | if ( $DEBUG_sys ) ; then |
---|
| 1913 | echo "IGCM_sys_ncea :" $@ |
---|
| 1914 | fi |
---|
[714] | 1915 | |
---|
| 1916 | typeset NB_ESSAI DELAI status i |
---|
| 1917 | # number of tentative |
---|
| 1918 | NB_ESSAI=3 |
---|
| 1919 | # time delay between tentative |
---|
| 1920 | DELAI=2 |
---|
| 1921 | |
---|
| 1922 | i=0 |
---|
| 1923 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1924 | ncea $@ > out_rsync 2>&1 |
---|
| 1925 | status=$? |
---|
| 1926 | if [ ${status} -gt 0 ] ; then |
---|
| 1927 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 1928 | cat out_rsync |
---|
| 1929 | \rm out_rsync |
---|
| 1930 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1931 | sleep $DELAI |
---|
[714] | 1932 | else |
---|
| 1933 | \rm out_rsync |
---|
| 1934 | break |
---|
| 1935 | fi |
---|
| 1936 | (( i = i + 1 )) |
---|
| 1937 | done |
---|
| 1938 | |
---|
| 1939 | if [ ${status} -gt 0 ] ; then |
---|
| 1940 | echo "IGCM_sys_ncea : ncea error" |
---|
| 1941 | IGCM_debug_Exit "ncea" |
---|
[544] | 1942 | fi |
---|
[257] | 1943 | |
---|
[544] | 1944 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[257] | 1945 | } |
---|
| 1946 | |
---|
| 1947 | function IGCM_sys_ncecat { |
---|
[544] | 1948 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 1949 | if ( $DEBUG_sys ) ; then |
---|
| 1950 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1951 | fi |
---|
[714] | 1952 | |
---|
| 1953 | typeset NB_ESSAI DELAI status i |
---|
| 1954 | # number of tentative |
---|
| 1955 | NB_ESSAI=3 |
---|
| 1956 | # time delay between tentative |
---|
| 1957 | DELAI=2 |
---|
| 1958 | |
---|
| 1959 | i=0 |
---|
| 1960 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1961 | ncecat $@ > out_rsync 2>&1 |
---|
| 1962 | status=$? |
---|
| 1963 | if [ ${status} -gt 0 ] ; then |
---|
| 1964 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 1965 | cat out_rsync |
---|
| 1966 | \rm out_rsync |
---|
| 1967 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1968 | sleep $DELAI |
---|
[714] | 1969 | else |
---|
| 1970 | \rm out_rsync |
---|
| 1971 | break |
---|
| 1972 | fi |
---|
| 1973 | (( i = i + 1 )) |
---|
| 1974 | done |
---|
| 1975 | |
---|
| 1976 | if [ ${status} -gt 0 ] ; then |
---|
| 1977 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 1978 | IGCM_debug_Exit "ncecat" |
---|
[544] | 1979 | fi |
---|
[257] | 1980 | |
---|
[544] | 1981 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[257] | 1982 | } |
---|
| 1983 | |
---|
| 1984 | function IGCM_sys_ncflint { |
---|
[544] | 1985 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 1986 | if ( $DEBUG_sys ) ; then |
---|
| 1987 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1988 | fi |
---|
[714] | 1989 | |
---|
| 1990 | typeset NB_ESSAI DELAI status i |
---|
| 1991 | # number of tentative |
---|
| 1992 | NB_ESSAI=3 |
---|
| 1993 | # time delay between tentative |
---|
| 1994 | DELAI=2 |
---|
| 1995 | |
---|
| 1996 | i=0 |
---|
| 1997 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1998 | ncflint $@ > out_rsync 2>&1 |
---|
| 1999 | status=$? |
---|
| 2000 | if [ ${status} -gt 0 ] ; then |
---|
| 2001 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 2002 | cat out_rsync |
---|
| 2003 | \rm out_rsync |
---|
| 2004 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2005 | sleep $DELAI |
---|
[714] | 2006 | else |
---|
| 2007 | \rm out_rsync |
---|
| 2008 | break |
---|
| 2009 | fi |
---|
| 2010 | (( i = i + 1 )) |
---|
| 2011 | done |
---|
| 2012 | |
---|
| 2013 | if [ ${status} -gt 0 ] ; then |
---|
| 2014 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2015 | IGCM_debug_Exit "ncflint" |
---|
[544] | 2016 | fi |
---|
[257] | 2017 | |
---|
[544] | 2018 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[257] | 2019 | } |
---|
| 2020 | |
---|
| 2021 | function IGCM_sys_ncks { |
---|
[544] | 2022 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2023 | if ( $DEBUG_sys ) ; then |
---|
| 2024 | echo "IGCM_sys_ncks :" $@ |
---|
| 2025 | fi |
---|
[714] | 2026 | |
---|
| 2027 | typeset NB_ESSAI DELAI status i |
---|
| 2028 | # number of tentative |
---|
| 2029 | NB_ESSAI=3 |
---|
| 2030 | # time delay between tentative |
---|
| 2031 | DELAI=2 |
---|
| 2032 | |
---|
| 2033 | i=0 |
---|
| 2034 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2035 | ncks $@ > out_rsync 2>&1 |
---|
| 2036 | status=$? |
---|
| 2037 | if [ ${status} -gt 0 ] ; then |
---|
| 2038 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2039 | cat out_rsync |
---|
| 2040 | \rm out_rsync |
---|
| 2041 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2042 | sleep $DELAI |
---|
[714] | 2043 | else |
---|
| 2044 | \rm out_rsync |
---|
| 2045 | break |
---|
| 2046 | fi |
---|
| 2047 | (( i = i + 1 )) |
---|
| 2048 | done |
---|
| 2049 | |
---|
| 2050 | if [ ${status} -gt 0 ] ; then |
---|
| 2051 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2052 | IGCM_debug_Exit "ncks" |
---|
[544] | 2053 | fi |
---|
[257] | 2054 | |
---|
[544] | 2055 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[257] | 2056 | } |
---|
| 2057 | |
---|
| 2058 | function IGCM_sys_ncpdq { |
---|
[544] | 2059 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2060 | if ( $DEBUG_sys ) ; then |
---|
| 2061 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2062 | fi |
---|
[714] | 2063 | |
---|
| 2064 | typeset NB_ESSAI DELAI status i |
---|
| 2065 | # number of tentative |
---|
| 2066 | NB_ESSAI=3 |
---|
| 2067 | # time delay between tentative |
---|
| 2068 | DELAI=2 |
---|
| 2069 | |
---|
| 2070 | i=0 |
---|
| 2071 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2072 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2073 | status=$? |
---|
| 2074 | if [ ${status} -gt 0 ] ; then |
---|
| 2075 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2076 | cat out_rsync |
---|
| 2077 | \rm out_rsync |
---|
| 2078 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2079 | sleep $DELAI |
---|
[714] | 2080 | else |
---|
| 2081 | \rm out_rsync |
---|
| 2082 | break |
---|
| 2083 | fi |
---|
| 2084 | (( i = i + 1 )) |
---|
| 2085 | done |
---|
| 2086 | |
---|
| 2087 | if [ ${status} -gt 0 ] ; then |
---|
| 2088 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2089 | IGCM_debug_Exit "ncpdq" |
---|
[544] | 2090 | fi |
---|
[257] | 2091 | |
---|
[544] | 2092 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[257] | 2093 | } |
---|
| 2094 | |
---|
| 2095 | function IGCM_sys_ncra { |
---|
[544] | 2096 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2097 | if ( $DEBUG_sys ) ; then |
---|
| 2098 | echo "IGCM_sys_ncra :" $@ |
---|
| 2099 | fi |
---|
[714] | 2100 | |
---|
| 2101 | typeset NB_ESSAI DELAI status i |
---|
| 2102 | # number of tentative |
---|
| 2103 | NB_ESSAI=3 |
---|
| 2104 | # time delay between tentative |
---|
| 2105 | DELAI=2 |
---|
| 2106 | |
---|
| 2107 | i=0 |
---|
| 2108 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2109 | ncra $@ > out_rsync 2>&1 |
---|
| 2110 | status=$? |
---|
| 2111 | if [ ${status} -gt 0 ] ; then |
---|
| 2112 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2113 | cat out_rsync |
---|
| 2114 | \rm out_rsync |
---|
| 2115 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2116 | sleep $DELAI |
---|
[714] | 2117 | else |
---|
| 2118 | \rm out_rsync |
---|
| 2119 | break |
---|
| 2120 | fi |
---|
| 2121 | (( i = i + 1 )) |
---|
| 2122 | done |
---|
| 2123 | |
---|
| 2124 | if [ ${status} -gt 0 ] ; then |
---|
| 2125 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2126 | IGCM_debug_Exit "ncra" |
---|
[544] | 2127 | fi |
---|
[257] | 2128 | |
---|
[544] | 2129 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[257] | 2130 | } |
---|
| 2131 | |
---|
| 2132 | function IGCM_sys_ncrcat { |
---|
[544] | 2133 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2134 | if ( $DEBUG_sys ) ; then |
---|
| 2135 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2136 | fi |
---|
[714] | 2137 | |
---|
| 2138 | typeset NB_ESSAI DELAI status i |
---|
| 2139 | # number of tentative |
---|
| 2140 | NB_ESSAI=3 |
---|
| 2141 | # time delay between tentative |
---|
| 2142 | DELAI=2 |
---|
| 2143 | |
---|
| 2144 | i=0 |
---|
| 2145 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2146 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2147 | status=$? |
---|
| 2148 | if [ ${status} -gt 0 ] ; then |
---|
| 2149 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2150 | cat out_rsync |
---|
| 2151 | \rm out_rsync |
---|
| 2152 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2153 | sleep $DELAI |
---|
[714] | 2154 | else |
---|
| 2155 | \rm out_rsync |
---|
| 2156 | break |
---|
| 2157 | fi |
---|
| 2158 | (( i = i + 1 )) |
---|
| 2159 | done |
---|
| 2160 | |
---|
| 2161 | if [ ${status} -gt 0 ] ; then |
---|
| 2162 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2163 | #IGCM_debug_Exit "ncrcat" |
---|
[544] | 2164 | fi |
---|
[257] | 2165 | |
---|
[544] | 2166 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[257] | 2167 | } |
---|
| 2168 | |
---|
| 2169 | function IGCM_sys_ncrename { |
---|
[544] | 2170 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2171 | if ( $DEBUG_sys ) ; then |
---|
| 2172 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2173 | fi |
---|
[714] | 2174 | |
---|
| 2175 | typeset NB_ESSAI DELAI status i |
---|
| 2176 | # number of tentative |
---|
| 2177 | NB_ESSAI=3 |
---|
| 2178 | # time delay between tentative |
---|
| 2179 | DELAI=2 |
---|
| 2180 | |
---|
| 2181 | i=0 |
---|
| 2182 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2183 | ncrename $@ > out_rsync 2>&1 |
---|
| 2184 | status=$? |
---|
| 2185 | if [ ${status} -gt 0 ] ; then |
---|
| 2186 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2187 | cat out_rsync |
---|
| 2188 | \rm out_rsync |
---|
| 2189 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2190 | sleep $DELAI |
---|
[714] | 2191 | else |
---|
| 2192 | \rm out_rsync |
---|
| 2193 | break |
---|
| 2194 | fi |
---|
| 2195 | (( i = i + 1 )) |
---|
| 2196 | done |
---|
| 2197 | |
---|
| 2198 | if [ ${status} -gt 0 ] ; then |
---|
| 2199 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2200 | IGCM_debug_Exit "ncrename" |
---|
[544] | 2201 | fi |
---|
[257] | 2202 | |
---|
[544] | 2203 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[257] | 2204 | } |
---|
| 2205 | |
---|
| 2206 | function IGCM_sys_ncwa { |
---|
[544] | 2207 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2208 | if ( $DEBUG_sys ) ; then |
---|
| 2209 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2210 | fi |
---|
[714] | 2211 | |
---|
| 2212 | typeset NB_ESSAI DELAI status i |
---|
| 2213 | # number of tentative |
---|
| 2214 | NB_ESSAI=3 |
---|
| 2215 | # time delay between tentative |
---|
| 2216 | DELAI=2 |
---|
| 2217 | |
---|
| 2218 | i=0 |
---|
| 2219 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2220 | ncwa $@ > out_rsync 2>&1 |
---|
| 2221 | status=$? |
---|
| 2222 | if [ ${status} -gt 0 ] ; then |
---|
| 2223 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2224 | cat out_rsync |
---|
| 2225 | \rm out_rsync |
---|
| 2226 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2227 | sleep $DELAI |
---|
[714] | 2228 | else |
---|
| 2229 | \rm out_rsync |
---|
| 2230 | break |
---|
| 2231 | fi |
---|
| 2232 | (( i = i + 1 )) |
---|
| 2233 | done |
---|
| 2234 | |
---|
| 2235 | if [ ${status} -gt 0 ] ; then |
---|
| 2236 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2237 | IGCM_debug_Exit "ncwa" |
---|
[544] | 2238 | fi |
---|
[257] | 2239 | |
---|
[544] | 2240 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[257] | 2241 | } |
---|
| 2242 | |
---|
[285] | 2243 | ############################################################## |
---|
| 2244 | # CDO OPERATOR |
---|
| 2245 | |
---|
| 2246 | function IGCM_sys_cdo { |
---|
[544] | 2247 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 2248 | if ( $DEBUG_sys ) ; then |
---|
| 2249 | echo "IGCM_sys_cdo :" $@ |
---|
| 2250 | fi |
---|
[714] | 2251 | |
---|
| 2252 | typeset status |
---|
| 2253 | |
---|
| 2254 | \cdo $@ > out_rsync 2>&1 |
---|
| 2255 | status=$? |
---|
| 2256 | if [ ${status} -gt 0 ] ; then |
---|
| 2257 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2258 | cat out_rsync |
---|
| 2259 | \rm out_rsync |
---|
[544] | 2260 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2261 | return 1 |
---|
| 2262 | else |
---|
| 2263 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2264 | return 0 |
---|
| 2265 | fi |
---|
[285] | 2266 | |
---|
[544] | 2267 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[285] | 2268 | } |
---|
| 2269 | |
---|
[257] | 2270 | ############################################################ |
---|
| 2271 | # Activate Running Environnment Variables |
---|
| 2272 | |
---|
| 2273 | function IGCM_sys_activ_variables { |
---|
[544] | 2274 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 2275 | if ( $DEBUG_sys ) ; then |
---|
| 2276 | echo "IGCM_sys_activ_variables" |
---|
| 2277 | fi |
---|
| 2278 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[257] | 2279 | } |
---|
| 2280 | |
---|
| 2281 | ############################################################ |
---|
| 2282 | # Desactivate Running Environnment Variables |
---|
| 2283 | |
---|
| 2284 | function IGCM_sys_desactiv_variables { |
---|
[544] | 2285 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 2286 | if ( $DEBUG_sys ) ; then |
---|
| 2287 | echo "IGCM_sys_desactiv_variables" |
---|
| 2288 | fi |
---|
| 2289 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[257] | 2290 | } |
---|
| 2291 | |
---|
| 2292 | ############################################################ |
---|
| 2293 | # Build run file |
---|
| 2294 | |
---|
| 2295 | function IGCM_sys_build_run_file { |
---|
[544] | 2296 | IGCM_debug_PushStack "IGCM_sys_build_run_file" |
---|
| 2297 | if ( $DEBUG_sys ) ; then |
---|
| 2298 | echo "IGCM_sys_build_run_file" |
---|
| 2299 | fi |
---|
| 2300 | IGCM_debug_PopStack "IGCM_sys_build_run_file" |
---|
[257] | 2301 | } |
---|