[676] | 1 | #!/bin/ksh |
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[257] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[257] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[676] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[257] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Mercure X64 |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[676] | 24 | #D- This ksh library if a layer under some usefull |
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[257] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[544] | 64 | # Host and user names |
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[257] | 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | |
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| 70 | #D- |
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| 71 | #D-#================================================== |
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| 72 | #D-Program used in libIGCM |
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| 73 | #D-#================================================== |
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| 74 | |
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[742] | 75 | # Submit command |
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| 76 | typeset SUBMIT=${SUBMIT:=qsub} |
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[257] | 77 | # rsync with path |
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| 78 | typeset -r RSYNC=/usr/bin/rsync |
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| 79 | # RSYNC_opt args to rsync |
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| 80 | typeset -r RSYNC_opt="-va" |
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| 81 | # ie storage filesystem |
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| 82 | typeset -r RHOST=mercure |
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| 83 | |
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| 84 | #==================================================== |
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[305] | 85 | # Set environment tools (ferret, nco, cdo) |
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| 86 | #==================================================== |
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[257] | 87 | . /home/cont003/p86ipsl/.atlas_env_mercure01_ksh |
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| 88 | |
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| 89 | #==================================================== |
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[736] | 90 | # AddNoise PATH |
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| 91 | #==================================================== |
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| 92 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X86_64/bin |
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| 93 | |
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| 94 | #==================================================== |
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[257] | 95 | # Host specific DIRECTORIES |
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| 96 | #==================================================== |
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| 97 | |
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| 98 | #==================================================== |
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| 99 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 100 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 101 | |
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| 102 | #==================================================== |
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[676] | 103 | # For interactive jobs on mercure |
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[257] | 104 | PBS_O_WORKDIR=${PBS_O_WORKDIR:=$(pwd)} |
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| 105 | |
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| 106 | #==================================================== |
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| 107 | #- SUBMIT_DIR : submission dir |
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| 108 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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| 109 | |
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| 110 | #==================================================== |
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| 111 | #- IN |
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[545] | 112 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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[717] | 113 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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[257] | 114 | |
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| 115 | #==================================================== |
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[725] | 116 | #- ARCHIVE (dedicated to large files) |
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| 117 | typeset ARCHIVE=${CCCSTOREDIR} |
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| 118 | |
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| 119 | #==================================================== |
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| 120 | #- STORAGE (dedicated to small/medium files) |
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| 121 | typeset STORAGE=${CCCWORKDIR} |
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| 122 | |
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| 123 | #==================================================== |
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[544] | 124 | #- R_OUT |
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[725] | 125 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[257] | 126 | |
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| 127 | #==================================================== |
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[587] | 128 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[725] | 129 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[587] | 130 | |
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| 131 | #==================================================== |
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[544] | 132 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 133 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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[257] | 134 | |
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| 135 | #==================================================== |
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[544] | 136 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 137 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 138 | |
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| 139 | #==================================================== |
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[257] | 140 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[615] | 141 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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[257] | 142 | |
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| 143 | #==================================================== |
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| 144 | #- Max number of arguments passed to nco operator or demigration command |
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| 145 | UNIX_MAX_LIMIT=360 |
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| 146 | |
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[650] | 147 | #- set PackDefault true on NEC front-end |
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| 148 | PackDefault=true |
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| 149 | |
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[257] | 150 | #D-#================================================== |
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[725] | 151 | #D-function IGCM_sys_ChangeArchive |
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| 152 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
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| 153 | #D-* Examples: |
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| 154 | #D- |
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| 155 | function IGCM_sys_ChangeArchive { |
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| 156 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
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| 157 | |
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[743] | 158 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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| 159 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[725] | 160 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
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| 161 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
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| 162 | |
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| 163 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
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| 164 | } |
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| 165 | |
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| 166 | #D-#================================================== |
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[257] | 167 | #D-function IGCM_sys_RshMaster |
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| 168 | #D-* Purpose: Just a fake command to wrapp |
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| 169 | #D- IGCM_card call in post-treatment |
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| 170 | #D- Ulam do not see brodie filesystem |
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| 171 | #D- Cesium do not see all mercure filesystem |
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| 172 | #D- That's why we need this hack. |
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| 173 | #D-* Examples: |
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| 174 | #D- |
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| 175 | function IGCM_sys_RshMaster { |
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[544] | 176 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 177 | /bin/ksh <<-EOF |
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[257] | 178 | export libIGCM=${libIGCM} |
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| 179 | export DEBUG_debug=${DEBUG_debug} |
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| 180 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 181 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 182 | ${@} |
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| 183 | EOF |
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[544] | 184 | if [ $? -gt 0 ] ; then |
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| 185 | echo "IGCM_sys_RshMaster : erreur." |
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| 186 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 187 | fi |
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| 188 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[257] | 189 | } |
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| 190 | |
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| 191 | #D-#================================================== |
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| 192 | #D-function IGCM_sys_RshArchive |
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| 193 | #D-* Purpose: Archive rsh command |
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| 194 | #D-* Examples: |
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| 195 | #D- |
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| 196 | function IGCM_sys_RshArchive { |
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[544] | 197 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 198 | /bin/ksh <<-EOF |
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[257] | 199 | ${@} |
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| 200 | EOF |
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[544] | 201 | if [ $? -gt 0 ] ; then |
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| 202 | echo "IGCM_sys_RshArchive : erreur." |
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| 203 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 204 | fi |
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| 205 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[257] | 206 | } |
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| 207 | |
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| 208 | #D-#================================================== |
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| 209 | #D-function IGCM_sys_RshPost |
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[343] | 210 | #D-* Purpose: Post-process rsh command |
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[257] | 211 | #D-* Examples: |
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| 212 | #D- |
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| 213 | function IGCM_sys_RshPost { |
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[544] | 214 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 215 | if ( $DEBUG_sys ) ; then |
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| 216 | echo "IGCM_sys_RshPost :" $@ |
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| 217 | fi |
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| 218 | /bin/ksh ${@} |
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| 219 | if [ $? -gt 0 ] ; then |
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| 220 | echo "IGCM_sys_RshPost : erreur." |
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| 221 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 222 | fi |
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| 223 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[257] | 224 | } |
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| 225 | |
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| 226 | #D-#================================================== |
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[442] | 227 | #D-function IGCM_sys_SendMail |
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| 228 | #D-* Purpose: Send mail when simulation is over |
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| 229 | #D-* Examples: |
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| 230 | #D- |
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| 231 | function IGCM_sys_SendMail { |
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[544] | 232 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 233 | if ( $DEBUG_sys ) ; then |
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| 234 | echo "IGCM_sys_SendMail :" $@ |
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| 235 | fi |
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[442] | 236 | |
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[544] | 237 | if ( ${ExitFlag} ) ; then |
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| 238 | status=failed |
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| 239 | else |
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| 240 | status=completed |
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| 241 | fi |
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[676] | 242 | |
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[544] | 243 | cat << END_MAIL > job_end.mail |
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[442] | 244 | Dear ${LOGIN}, |
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| 245 | |
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[452] | 246 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[442] | 247 | Job started : ${DateBegin} |
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| 248 | Job ended : ${DateEnd} |
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| 249 | Output files are available in ${R_SAVE} |
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[452] | 250 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[442] | 251 | END_MAIL |
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| 252 | |
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[544] | 253 | if [ X"${config_UserChoices_MailName}" != X ] ; then |
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| 254 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 255 | elif [ -f ~/.forward ] ; then |
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| 256 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 257 | else |
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| 258 | mailx -s "${config_UserChoices_JobName} ${status}" ${LOGIN} < job_end.mail |
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| 259 | fi |
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[442] | 260 | |
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[544] | 261 | if [ $? -gt 0 ] ; then |
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| 262 | echo "IGCM_sys_SendMail : erreur." |
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| 263 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 264 | fi |
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| 265 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[442] | 266 | } |
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| 267 | |
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| 268 | #D-#================================================== |
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[257] | 269 | #D-function IGCM_sys_Mkdir |
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| 270 | #D-* Purpose: Master locale mkdir command |
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| 271 | #D-* Examples: |
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| 272 | #D- |
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| 273 | function IGCM_sys_Mkdir { |
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[544] | 274 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 275 | if ( $DEBUG_sys ) ; then |
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| 276 | echo "IGCM_sys_Mkdir :" $@ |
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| 277 | fi |
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| 278 | if [ ! -d ${1} ]; then |
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| 279 | \mkdir -p $1 |
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| 280 | if [ $? -gt 0 ] ; then |
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| 281 | echo "IGCM_sys_Mkdir : erreur." |
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| 282 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[257] | 283 | fi |
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[544] | 284 | fi |
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| 285 | # vérification : |
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| 286 | if [ ! -d ${1} ] ; then |
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| 287 | echo "IGCM_sys_Mkdir : erreur." |
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| 288 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 289 | fi |
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| 290 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[257] | 291 | } |
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| 292 | |
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| 293 | #D-#================================================== |
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| 294 | #D-function IGCM_sys_MkdirArchive |
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| 295 | #D-* Purpose: Mkdir on Archive |
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| 296 | #D-* Examples: |
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| 297 | #D- |
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| 298 | function IGCM_sys_MkdirArchive { |
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[544] | 299 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 300 | if ( $DEBUG_sys ) ; then |
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| 301 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 302 | fi |
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| 303 | #- creation de repertoire sur le serveur fichier |
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[676] | 304 | if [ ! -d ${1} ]; then |
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[544] | 305 | \mkdir -p $1 |
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| 306 | if [ $? -gt 0 ] ; then |
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| 307 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 308 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[257] | 309 | fi |
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[544] | 310 | fi |
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| 311 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[257] | 312 | } |
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| 313 | |
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| 314 | #D-#================================================== |
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| 315 | #D-function IGCM_sys_MkdirWork |
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| 316 | #D-* Purpose: Mkdir on Work |
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| 317 | #D-* Examples: |
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| 318 | #D- |
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| 319 | function IGCM_sys_MkdirWork { |
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[544] | 320 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 321 | if ( $DEBUG_sys ) ; then |
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| 322 | echo "IGCM_sys_MkdirWork :" $@ |
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| 323 | fi |
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| 324 | #- creation de repertoire sur le serveur fichier |
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[676] | 325 | if [ ! -d ${1} ]; then |
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[544] | 326 | \mkdir -p $1 |
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| 327 | if [ $? -gt 0 ] ; then |
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| 328 | echo "IGCM_sys_MkdirWork : erreur." |
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| 329 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[257] | 330 | fi |
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[544] | 331 | fi |
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| 332 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[257] | 333 | } |
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| 334 | |
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| 335 | #D-#================================================== |
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| 336 | #D-function IGCM_sys_Cd |
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| 337 | #D-* Purpose: master cd command |
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| 338 | #D-* Examples: |
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| 339 | #D- |
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| 340 | function IGCM_sys_Cd { |
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[544] | 341 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 342 | if ( $DEBUG_sys ) ; then |
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| 343 | echo "IGCM_sys_Cd :" $@ |
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| 344 | fi |
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| 345 | \cd $1 |
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| 346 | if [ $? -gt 0 ] ; then |
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| 347 | echo "IGCM_sys_Cd : erreur." |
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| 348 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 349 | fi |
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| 350 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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[257] | 351 | } |
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| 352 | |
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| 353 | #D-#================================================== |
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| 354 | #D-function IGCM_sys_Chmod |
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| 355 | #D-* Purpose: Chmod |
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| 356 | #D-* Examples: |
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| 357 | #D- |
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| 358 | function IGCM_sys_Chmod { |
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[544] | 359 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 360 | if ( $DEBUG_sys ) ; then |
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| 361 | echo "IGCM_sys_Chmod :" $@ |
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| 362 | fi |
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| 363 | if [ $DRYRUN -le 1 ]; then |
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| 364 | \chmod $@ |
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| 365 | if [ $? -gt 0 ] ; then |
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| 366 | echo "IGCM_sys_Chmod : erreur." |
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| 367 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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[257] | 368 | fi |
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[544] | 369 | else |
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| 370 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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| 371 | fi |
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| 372 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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[257] | 373 | } |
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| 374 | |
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| 375 | #D-#================================================== |
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| 376 | #D-function IGCM_sys_FileSize |
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| 377 | #D-* Purpose: Filesize |
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| 378 | #D-* Examples: |
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| 379 | #D- |
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| 380 | function IGCM_sys_FileSize { |
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[544] | 381 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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[257] | 382 | |
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[544] | 383 | typeset sizeF |
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| 384 | set +A sizeF -- $( ls -la ${1} ) |
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| 385 | if [ $? -gt 0 ] ; then |
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| 386 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 387 | fi |
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| 388 | eval ${2}=${sizeF[4]} |
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[257] | 389 | |
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[544] | 390 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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[257] | 391 | } |
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| 392 | |
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| 393 | #D-#================================================== |
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| 394 | #D-function IGCM_sys_TestDir |
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| 395 | #D-* Purpose: Test Directory that must exists |
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| 396 | #D-* Examples: |
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| 397 | #D- |
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| 398 | function IGCM_sys_TestDir { |
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[544] | 399 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 400 | if ( $DEBUG_sys ) ; then |
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| 401 | echo "IGCM_sys_TestDir :" $@ |
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| 402 | fi |
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| 403 | typeset ExistFlag |
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| 404 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 405 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[257] | 406 | |
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[544] | 407 | return ${ExistFlag} |
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[257] | 408 | } |
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| 409 | |
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| 410 | #D-#================================================== |
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| 411 | #D-function IGCM_sys_TestDirArchive |
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| 412 | #D-* Purpose: Test Directory that must exists on Archive |
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| 413 | #D-* Examples: |
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| 414 | #D- |
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| 415 | function IGCM_sys_TestDirArchive { |
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[544] | 416 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 417 | if ( $DEBUG_sys ) ; then |
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| 418 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 419 | fi |
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| 420 | typeset ExistFlag |
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| 421 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 422 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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[257] | 423 | |
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[544] | 424 | return ${ExistFlag} |
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[257] | 425 | } |
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| 426 | |
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| 427 | #D-#================================================== |
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[548] | 428 | #D-function IGCM_sys_IsFileArchived |
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| 429 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 430 | #D-* Examples: |
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| 431 | #D- |
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| 432 | function IGCM_sys_IsFileArchived { |
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| 433 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 434 | if ( $DEBUG_sys ) ; then |
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| 435 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 436 | fi |
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| 437 | typeset IsArchivedFlag |
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[618] | 438 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
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[548] | 439 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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| 440 | |
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| 441 | return ${IsArchivedFlag} |
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| 442 | } |
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| 443 | |
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| 444 | #D-#================================================== |
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[257] | 445 | #D-function IGCM_sys_TestFileArchive |
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| 446 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 447 | #D-* Examples: |
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| 448 | #D- |
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| 449 | function IGCM_sys_TestFileArchive { |
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[544] | 450 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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| 451 | typeset ExistFlag |
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| 452 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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| 453 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[257] | 454 | |
---|
[544] | 455 | return ${ExistFlag} |
---|
[257] | 456 | } |
---|
| 457 | |
---|
| 458 | #D-#================================================== |
---|
[544] | 459 | #D-function IGCM_sys_TestFileBuffer |
---|
| 460 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 461 | #D-* Examples: |
---|
| 462 | #D- |
---|
| 463 | function IGCM_sys_TestFileBuffer { |
---|
| 464 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 465 | typeset ExistFlag |
---|
| 466 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 467 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 468 | |
---|
| 469 | return ${ExistFlag} |
---|
| 470 | } |
---|
| 471 | |
---|
| 472 | #D-#================================================== |
---|
[257] | 473 | #D-function IGCM_sys_CountFileArchive |
---|
| 474 | #D-* Purpose: Count files on Archive filesystem |
---|
| 475 | #D-* Examples: |
---|
| 476 | #D- |
---|
| 477 | function IGCM_sys_CountFileArchive { |
---|
[544] | 478 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 479 | ls ${@} 2>/dev/null | wc -l |
---|
| 480 | if [ $? -gt 0 ] ; then |
---|
| 481 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 482 | fi |
---|
| 483 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[257] | 484 | } |
---|
| 485 | |
---|
| 486 | #D-#================================================== |
---|
[544] | 487 | #D-function IGCM_sys_CountFileBuffer |
---|
| 488 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 489 | #D-* Examples: |
---|
| 490 | #D- |
---|
| 491 | function IGCM_sys_CountFileBuffer { |
---|
| 492 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 493 | ls ${@} 2>/dev/null | wc -l |
---|
| 494 | if [ $? -gt 0 ] ; then |
---|
| 495 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 496 | fi |
---|
| 497 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 498 | } |
---|
| 499 | |
---|
| 500 | #D-#================================================== |
---|
[257] | 501 | #D-function IGCM_sys_Tree |
---|
| 502 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 503 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 504 | #D- |
---|
| 505 | function IGCM_sys_Tree { |
---|
[544] | 506 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 507 | if ( $DEBUG_sys ) ; then |
---|
| 508 | echo "IGCM_sys_Tree :" $@ |
---|
| 509 | fi |
---|
[257] | 510 | |
---|
[544] | 511 | \tree -f $@ |
---|
[257] | 512 | |
---|
[544] | 513 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[257] | 514 | } |
---|
| 515 | |
---|
| 516 | #D-#================================================== |
---|
| 517 | #D-function IGCM_sys_Tar |
---|
[544] | 518 | #D-* Purpose: master tar command |
---|
[257] | 519 | #D-* Examples: |
---|
| 520 | #D- |
---|
| 521 | function IGCM_sys_Tar { |
---|
[544] | 522 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 523 | if ( $DEBUG_sys ) ; then |
---|
| 524 | echo "IGCM_sys_Tar :" $@ |
---|
| 525 | fi |
---|
| 526 | \tar cf $@ |
---|
| 527 | if [ $? -gt 0 ] ; then |
---|
| 528 | echo "IGCM_sys_Tar : erreur." |
---|
| 529 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 530 | fi |
---|
| 531 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[257] | 532 | } |
---|
| 533 | |
---|
| 534 | #D-#================================================== |
---|
| 535 | #D-function IGCM_sys_UnTar |
---|
| 536 | #D-* Purpose: master un-tar command |
---|
| 537 | #D-* Examples: |
---|
| 538 | #D- |
---|
| 539 | function IGCM_sys_UnTar { |
---|
[544] | 540 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 541 | if ( $DEBUG_sys ) ; then |
---|
| 542 | echo "IGCM_sys_UnTar :" $@ |
---|
| 543 | fi |
---|
| 544 | \tar xvf $1 |
---|
| 545 | if [ $? -gt 0 ] ; then |
---|
| 546 | echo "IGCM_sys_UnTar : erreur." |
---|
| 547 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 548 | fi |
---|
| 549 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[257] | 550 | } |
---|
| 551 | |
---|
| 552 | #D-#================================================== |
---|
| 553 | #D-function IGCM_sys_QsubPost |
---|
| 554 | #D-* Purpose: Qsub new job on scalaire |
---|
| 555 | #D-* Examples: |
---|
| 556 | #D- |
---|
| 557 | function IGCM_sys_QsubPost { |
---|
[544] | 558 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 559 | if ( $DEBUG_sys ) ; then |
---|
| 560 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 561 | fi |
---|
[586] | 562 | /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} |
---|
[544] | 563 | if [ $? -gt 0 ] ; then |
---|
| 564 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 565 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 566 | fi |
---|
| 567 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[257] | 568 | } |
---|
| 569 | |
---|
| 570 | #D-************************* |
---|
[676] | 571 | #D- File transfer functions |
---|
[257] | 572 | #D-************************* |
---|
| 573 | #D- |
---|
| 574 | |
---|
| 575 | #D-#================================================== |
---|
| 576 | #D-function IGCM_sys_Rsync_out |
---|
| 577 | #D-* Purpose: treat return val of rsync |
---|
| 578 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 579 | #D- Error values and explanations can depend on your system version. |
---|
| 580 | function IGCM_sys_Rsync_out { |
---|
[719] | 581 | status=$1 |
---|
| 582 | if [ ! $status ] ; then |
---|
[544] | 583 | echo "rsync error !" |
---|
| 584 | fi |
---|
[257] | 585 | |
---|
[544] | 586 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 587 | case $status in |
---|
[544] | 588 | 0) return ;; |
---|
| 589 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 590 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 591 | return;; |
---|
| 592 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 593 | echo "Incompatibilité de protocole." |
---|
| 594 | return;; |
---|
| 595 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 596 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 597 | echo "répertoires" |
---|
| 598 | return;; |
---|
| 599 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 600 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 601 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 602 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 603 | echo "pas par le serveur a été spécifiée." |
---|
| 604 | return;; |
---|
| 605 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 606 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 607 | return;; |
---|
| 608 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 609 | echo "Erreur d'entrée sortie fichier" |
---|
| 610 | return;; |
---|
| 611 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 612 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 613 | return;; |
---|
| 614 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 615 | echo "Erreur avec les diagnostics du programme" |
---|
| 616 | return;; |
---|
| 617 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 618 | echo "Erreur dans le code IPC" |
---|
| 619 | return;; |
---|
| 620 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 621 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 622 | return;; |
---|
| 623 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 624 | echo "Une erreur retournée par waitpid()" |
---|
| 625 | return;; |
---|
| 626 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 627 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 628 | return;; |
---|
| 629 | 23) echo "" |
---|
| 630 | echo "Erreur fichier inexistant" |
---|
| 631 | return;; |
---|
| 632 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 633 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 634 | return;; |
---|
[719] | 635 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[544] | 636 | return;; |
---|
| 637 | esac |
---|
| 638 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 639 | case $status in |
---|
[676] | 640 | 0) return;; |
---|
[544] | 641 | 1) echo "rsync error : Syntax or usage error " |
---|
| 642 | return;; |
---|
| 643 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 644 | return;; |
---|
| 645 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 646 | return;; |
---|
| 647 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 648 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 649 | echo "them; or an option was specified that is supported by the client and" |
---|
| 650 | echo "not by the server." |
---|
| 651 | return;; |
---|
| 652 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 653 | return;; |
---|
| 654 | 10) echo "rsync error : Error in socket I/O " |
---|
| 655 | return;; |
---|
| 656 | 11) echo "rsync error : Error in file I/O " |
---|
| 657 | return;; |
---|
| 658 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 659 | return;; |
---|
| 660 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 661 | return;; |
---|
| 662 | 14) echo "rsync error : Error in IPC code " |
---|
| 663 | return;; |
---|
| 664 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 665 | return;; |
---|
| 666 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 667 | return;; |
---|
| 668 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 669 | return;; |
---|
| 670 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 671 | return;; |
---|
| 672 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 673 | return;; |
---|
| 674 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 675 | return;; |
---|
[719] | 676 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[544] | 677 | return;; |
---|
| 678 | esac |
---|
| 679 | else |
---|
| 680 | echo "unknown language $MYLANG." |
---|
| 681 | return |
---|
| 682 | fi |
---|
[257] | 683 | } |
---|
[544] | 684 | |
---|
[257] | 685 | #D-#================================================== |
---|
| 686 | #D-function IGCM_sys_Cp |
---|
| 687 | #D-* Purpose: generic cp |
---|
| 688 | #D-* Examples: |
---|
| 689 | #D- |
---|
| 690 | function IGCM_sys_Cp { |
---|
[544] | 691 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 692 | if ( $DEBUG_sys ) ; then |
---|
| 693 | echo "IGCM_sys_Cp :" $@ |
---|
| 694 | fi |
---|
[257] | 695 | |
---|
[717] | 696 | typeset status |
---|
[257] | 697 | |
---|
[544] | 698 | echo cp $@ > out_rsync 2>&1 |
---|
| 699 | \cp $@ >> out_rsync 2>&1 |
---|
[717] | 700 | status=$? |
---|
[257] | 701 | |
---|
[717] | 702 | if [ ${status} -gt 0 ] ; then |
---|
| 703 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[544] | 704 | cat out_rsync |
---|
| 705 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 706 | else |
---|
| 707 | \rm out_rsync |
---|
| 708 | fi |
---|
| 709 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[257] | 710 | } |
---|
| 711 | |
---|
| 712 | #D-#================================================== |
---|
| 713 | #D-function IGCM_sys_Rm |
---|
| 714 | #D-* Purpose: generic rm |
---|
| 715 | #D-* Examples: |
---|
| 716 | #D- |
---|
| 717 | function IGCM_sys_Rm { |
---|
[544] | 718 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 719 | if ( $DEBUG_sys ) ; then |
---|
| 720 | echo "IGCM_sys_Rm :" $@ |
---|
| 721 | fi |
---|
[257] | 722 | |
---|
[717] | 723 | typeset status |
---|
[257] | 724 | |
---|
[544] | 725 | echo rm $@ > out_rsync 2>&1 |
---|
| 726 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 727 | status=$? |
---|
[257] | 728 | |
---|
[717] | 729 | if [ ${status} -gt 0 ] ; then |
---|
| 730 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[544] | 731 | cat out_rsync |
---|
| 732 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 733 | else |
---|
| 734 | \rm out_rsync |
---|
| 735 | fi |
---|
| 736 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[257] | 737 | } |
---|
| 738 | |
---|
| 739 | #D-#================================================== |
---|
| 740 | #D-function IGCM_sys_RmRunDir |
---|
| 741 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 742 | #D- scheduler will do the job) |
---|
[616] | 743 | #D- Dummy function on mercure front-end |
---|
[257] | 744 | #D-* Examples: |
---|
| 745 | #D- |
---|
| 746 | function IGCM_sys_RmRunDir { |
---|
[616] | 747 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 748 | if ( $DEBUG_sys ) ; then |
---|
| 749 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 750 | echo "Dummy call, let the scheduler do that." |
---|
| 751 | fi |
---|
| 752 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[257] | 753 | } |
---|
| 754 | |
---|
| 755 | #D-#================================================== |
---|
| 756 | #D-function IGCM_sys_Mv |
---|
| 757 | #D-* Purpose: generic move |
---|
| 758 | #D-* Examples: |
---|
| 759 | #D- |
---|
| 760 | function IGCM_sys_Mv { |
---|
[544] | 761 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 762 | if ( $DEBUG_sys ) ; then |
---|
| 763 | echo "IGCM_sys_Mv :" $@ |
---|
| 764 | fi |
---|
[257] | 765 | |
---|
[544] | 766 | if [ $DRYRUN = 0 ]; then |
---|
[257] | 767 | |
---|
[717] | 768 | typeset status |
---|
[676] | 769 | |
---|
[544] | 770 | echo mv $@ > out_rsync 2>&1 |
---|
| 771 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 772 | status=$? |
---|
[676] | 773 | |
---|
[717] | 774 | if [ ${status} -gt 0 ] ; then |
---|
| 775 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[544] | 776 | cat out_rsync |
---|
| 777 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[257] | 778 | else |
---|
[544] | 779 | \rm out_rsync |
---|
[257] | 780 | fi |
---|
[544] | 781 | else |
---|
| 782 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 783 | fi |
---|
[257] | 784 | |
---|
[544] | 785 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[257] | 786 | } |
---|
| 787 | |
---|
| 788 | #D-#================================================== |
---|
| 789 | #D-function IGCM_sys_Put_Dir |
---|
| 790 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 791 | #D-* Examples: |
---|
| 792 | #D- |
---|
| 793 | function IGCM_sys_Put_Dir { |
---|
[544] | 794 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 795 | if ( $DEBUG_sys ) ; then |
---|
| 796 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 797 | fi |
---|
| 798 | if [ $DRYRUN = 0 ]; then |
---|
| 799 | if [ ! -d ${1} ] ; then |
---|
| 800 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 801 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 802 | return |
---|
[257] | 803 | fi |
---|
| 804 | |
---|
[717] | 805 | typeset status |
---|
[257] | 806 | |
---|
[544] | 807 | # Only if we use rsync |
---|
| 808 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 809 | # |
---|
| 810 | #USUAL WAY |
---|
| 811 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
[717] | 812 | status=$? |
---|
[257] | 813 | |
---|
[717] | 814 | if [ ${status} -gt 0 ] ; then |
---|
| 815 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[544] | 816 | cat out_rsync |
---|
| 817 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[257] | 818 | else |
---|
[544] | 819 | \rm out_rsync |
---|
[257] | 820 | fi |
---|
[544] | 821 | else |
---|
| 822 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 823 | fi |
---|
| 824 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[257] | 825 | } |
---|
| 826 | |
---|
| 827 | #D-#================================================== |
---|
| 828 | #D-function IGCM_sys_Get_Dir |
---|
[676] | 829 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[257] | 830 | #D-* Examples: |
---|
| 831 | #D- |
---|
| 832 | function IGCM_sys_Get_Dir { |
---|
[544] | 833 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 834 | if ( $DEBUG_sys ) ; then |
---|
| 835 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 836 | fi |
---|
| 837 | if [ $DRYRUN = 0 ]; then |
---|
[676] | 838 | # if [ ! -d ${1} ] ; then |
---|
| 839 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 840 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 841 | # return |
---|
| 842 | # fi |
---|
[257] | 843 | |
---|
[717] | 844 | typeset NB_ESSAI DELAI status i |
---|
| 845 | # number of tentative |
---|
| 846 | NB_ESSAI=3 |
---|
| 847 | # time delay between tentative |
---|
| 848 | DELAI=2 |
---|
[257] | 849 | |
---|
[544] | 850 | # Only if we use rsync |
---|
| 851 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 852 | # |
---|
[717] | 853 | # USUAL WAY |
---|
| 854 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
[713] | 855 | ccc_hsm get -r $1 |
---|
[257] | 856 | |
---|
[717] | 857 | i=0 |
---|
| 858 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 859 | \cp -ur $1 $2 >> out_rsync 2>&1 |
---|
| 860 | status=$? |
---|
| 861 | if [ ${status} -gt 0 ]; then |
---|
| 862 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 863 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 864 | sleep $DELAI |
---|
| 865 | else |
---|
| 866 | break |
---|
| 867 | fi |
---|
| 868 | (( i = i + 1 )) |
---|
| 869 | done |
---|
| 870 | |
---|
| 871 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 872 | echo "IGCM_sys_Get_Dir : error." |
---|
| 873 | cat out_rsync |
---|
| 874 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[257] | 875 | else |
---|
[544] | 876 | \rm out_rsync |
---|
[257] | 877 | fi |
---|
[544] | 878 | else |
---|
| 879 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 880 | fi |
---|
| 881 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[257] | 882 | } |
---|
| 883 | |
---|
| 884 | #D-#================================================== |
---|
| 885 | #D-function IGCM_sys_Get_Master |
---|
| 886 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 887 | #D-* Examples: |
---|
| 888 | #D- |
---|
| 889 | function IGCM_sys_Get_Master { |
---|
[544] | 890 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 891 | if ( $DEBUG_sys ) ; then |
---|
| 892 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 893 | fi |
---|
| 894 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 895 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[544] | 896 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 897 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 898 | return |
---|
[257] | 899 | fi |
---|
| 900 | |
---|
[717] | 901 | typeset NB_ESSAI DELAI status i |
---|
| 902 | # number of tentative |
---|
| 903 | NB_ESSAI=3 |
---|
| 904 | # time delay between tentative |
---|
| 905 | DELAI=2 |
---|
[257] | 906 | |
---|
[717] | 907 | i=0 |
---|
| 908 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 909 | \cp -urL $1 $2 > out_rsync 2>&1 |
---|
| 910 | status=$? |
---|
| 911 | if [ ${status} -gt 0 ]; then |
---|
| 912 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 913 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 914 | sleep $DELAI |
---|
| 915 | else |
---|
| 916 | break |
---|
| 917 | fi |
---|
| 918 | (( i = i + 1 )) |
---|
| 919 | done |
---|
[257] | 920 | |
---|
[717] | 921 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 922 | echo "IGCM_sys_Get_Master : error." |
---|
| 923 | cat out_rsync |
---|
| 924 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[257] | 925 | else |
---|
[544] | 926 | \rm out_rsync |
---|
[257] | 927 | fi |
---|
[544] | 928 | else |
---|
| 929 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 930 | fi |
---|
| 931 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[257] | 932 | } |
---|
| 933 | |
---|
| 934 | #D-#================================================== |
---|
[442] | 935 | #D-function IGCM_sys_Put_Rest |
---|
[544] | 936 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[442] | 937 | #D- File and target directory must exist. |
---|
| 938 | #D-* Examples: |
---|
| 939 | #D- |
---|
| 940 | function IGCM_sys_Put_Rest { |
---|
[544] | 941 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 942 | if ( $DEBUG_sys ) ; then |
---|
| 943 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 944 | fi |
---|
| 945 | if [ $DRYRUN = 0 ]; then |
---|
| 946 | if [ ! -f ${1} ] ; then |
---|
| 947 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 948 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[442] | 949 | fi |
---|
| 950 | |
---|
[717] | 951 | typeset status |
---|
[544] | 952 | # |
---|
| 953 | if [ X${JobType} = XRUN ] ; then |
---|
| 954 | IGCM_sys_Chmod 444 ${1} |
---|
| 955 | fi |
---|
[442] | 956 | |
---|
[544] | 957 | # |
---|
| 958 | # USUAL WAY |
---|
| 959 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 960 | status=$? |
---|
[544] | 961 | |
---|
[676] | 962 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 963 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 964 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[442] | 965 | |
---|
[676] | 966 | # #RSYNC WITH NFS USE |
---|
| 967 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 968 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[442] | 969 | |
---|
[717] | 970 | # status=$? |
---|
| 971 | # IGCM_sys_Rsync_out $status |
---|
[442] | 972 | |
---|
[676] | 973 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[717] | 974 | # (( status=status+$? )) |
---|
[442] | 975 | |
---|
[717] | 976 | if [ ${status} -gt 0 ] ; then |
---|
| 977 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[544] | 978 | cat out_rsync |
---|
| 979 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[442] | 980 | else |
---|
[544] | 981 | \rm out_rsync |
---|
[442] | 982 | fi |
---|
[544] | 983 | else |
---|
| 984 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 985 | fi |
---|
| 986 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[442] | 987 | } |
---|
| 988 | |
---|
| 989 | #D-#================================================== |
---|
[544] | 990 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 991 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 992 | #D- File and target directory must exist. |
---|
| 993 | #D-* Examples: |
---|
| 994 | #D- |
---|
| 995 | function IGCM_sys_PutBuffer_Rest { |
---|
| 996 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 997 | if ( $DEBUG_sys ) ; then |
---|
| 998 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 999 | fi |
---|
| 1000 | if [ $DRYRUN = 0 ]; then |
---|
| 1001 | if [ ! -f ${1} ] ; then |
---|
| 1002 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1003 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1004 | fi |
---|
| 1005 | |
---|
[717] | 1006 | typeset status |
---|
[544] | 1007 | # |
---|
| 1008 | if [ X${JobType} = XRUN ] ; then |
---|
| 1009 | IGCM_sys_Chmod 444 ${1} |
---|
| 1010 | fi |
---|
| 1011 | |
---|
| 1012 | # |
---|
| 1013 | # USUAL WAY |
---|
| 1014 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1015 | status=$? |
---|
[544] | 1016 | |
---|
[717] | 1017 | if [ ${status} -gt 0 ] ; then |
---|
| 1018 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[544] | 1019 | cat out_rsync |
---|
| 1020 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1021 | else |
---|
| 1022 | \rm out_rsync |
---|
| 1023 | fi |
---|
| 1024 | else |
---|
| 1025 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1026 | fi |
---|
| 1027 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1028 | } |
---|
| 1029 | |
---|
| 1030 | #D-#================================================== |
---|
[801] | 1031 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1032 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1033 | #D-* Examples: |
---|
| 1034 | #D- |
---|
| 1035 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1036 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 1037 | echo $1 |
---|
| 1038 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1039 | } |
---|
| 1040 | |
---|
| 1041 | #D-#================================================== |
---|
[257] | 1042 | #D-function IGCM_sys_Put_Out |
---|
[544] | 1043 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[257] | 1044 | #D-* Examples: |
---|
| 1045 | #D- |
---|
| 1046 | function IGCM_sys_Put_Out { |
---|
[544] | 1047 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1048 | if ( $DEBUG_sys ) ; then |
---|
| 1049 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1050 | fi |
---|
[676] | 1051 | |
---|
[710] | 1052 | typeset NB_ESSAI DELAI status i exist skip |
---|
[676] | 1053 | |
---|
| 1054 | # number of tentative |
---|
| 1055 | NB_ESSAI=3 |
---|
| 1056 | # time delay between tentative |
---|
| 1057 | DELAI=2 |
---|
| 1058 | |
---|
[544] | 1059 | if [ $DRYRUN = 0 ]; then |
---|
| 1060 | if [ ! -f ${1} ] ; then |
---|
| 1061 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1062 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1063 | return 1 |
---|
[257] | 1064 | fi |
---|
[544] | 1065 | # |
---|
| 1066 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1067 | # |
---|
[520] | 1068 | |
---|
[544] | 1069 | #===================================================== |
---|
| 1070 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1071 | #===================================================== |
---|
[520] | 1072 | |
---|
[544] | 1073 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1074 | #if [ $? -eq 0 ] ; then |
---|
| 1075 | # typeset WORKPATH FILEPATH |
---|
| 1076 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
[676] | 1077 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
[544] | 1078 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1079 | # # |
---|
| 1080 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1081 | #fi |
---|
[520] | 1082 | |
---|
[544] | 1083 | if [ X${JobType} = XRUN ] ; then |
---|
| 1084 | if [ X${3} = X ] ; then |
---|
[676] | 1085 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1086 | fi |
---|
| 1087 | fi |
---|
[676] | 1088 | # |
---|
[257] | 1089 | |
---|
[544] | 1090 | exist=false |
---|
| 1091 | skip=false |
---|
| 1092 | if [ -f $2 ] ; then |
---|
| 1093 | IGCM_debug_Print 1 "$2 already exist" |
---|
[587] | 1094 | #dmget $2 |
---|
| 1095 | ccc_hsm get $2 |
---|
[544] | 1096 | exist=true |
---|
| 1097 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
[676] | 1098 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1099 | skip=true |
---|
[544] | 1100 | else |
---|
[676] | 1101 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1102 | skip=false |
---|
[544] | 1103 | fi |
---|
| 1104 | fi |
---|
[676] | 1105 | # |
---|
[544] | 1106 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1107 | IGCM_sys_Chmod u+w $2 |
---|
| 1108 | fi |
---|
[676] | 1109 | |
---|
[544] | 1110 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1111 | i=0 |
---|
[676] | 1112 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1113 | # USUAL WAY |
---|
| 1114 | \cp $1 $2 > out_rsync 2>&1 |
---|
[710] | 1115 | status=$? |
---|
| 1116 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1117 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1118 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
| 1119 | sleep $DELAI |
---|
| 1120 | else |
---|
| 1121 | break |
---|
| 1122 | fi |
---|
| 1123 | (( i = i + 1 )) |
---|
| 1124 | done |
---|
[544] | 1125 | fi |
---|
[358] | 1126 | |
---|
[676] | 1127 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1128 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1129 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[257] | 1130 | |
---|
[676] | 1131 | # #RSYNC WITH NFS USE |
---|
| 1132 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1133 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[257] | 1134 | |
---|
[710] | 1135 | # status=$? |
---|
| 1136 | # IGCM_sys_Rsync_out $status |
---|
[257] | 1137 | |
---|
[676] | 1138 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[710] | 1139 | # (( status=status+$? )) |
---|
[257] | 1140 | |
---|
[710] | 1141 | if [ ${status} -gt 0 ] ; then |
---|
[676] | 1142 | echo "IGCM_sys_Put_Out : error." |
---|
| 1143 | cat out_rsync |
---|
| 1144 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 1145 | else |
---|
| 1146 | \rm out_rsync |
---|
| 1147 | fi |
---|
[544] | 1148 | else |
---|
| 1149 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1150 | fi |
---|
| 1151 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1152 | return 0 |
---|
| 1153 | } |
---|
| 1154 | |
---|
| 1155 | #D-#================================================== |
---|
| 1156 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1157 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1158 | #D-* Examples: |
---|
| 1159 | #D- |
---|
| 1160 | function IGCM_sys_PutBuffer_Out { |
---|
| 1161 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1162 | if ( $DEBUG_sys ) ; then |
---|
| 1163 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1164 | fi |
---|
[710] | 1165 | |
---|
| 1166 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1167 | |
---|
| 1168 | # number of tentative |
---|
| 1169 | NB_ESSAI=3 |
---|
| 1170 | # time delay between tentative |
---|
| 1171 | DELAI=2 |
---|
| 1172 | |
---|
[544] | 1173 | if [ $DRYRUN = 0 ]; then |
---|
| 1174 | if [ ! -f ${1} ] ; then |
---|
| 1175 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1176 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1177 | return 1 |
---|
| 1178 | fi |
---|
| 1179 | # |
---|
| 1180 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1181 | # |
---|
| 1182 | |
---|
| 1183 | if [ X${JobType} = XRUN ] ; then |
---|
| 1184 | if [ X${3} = X ] ; then |
---|
[676] | 1185 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1186 | fi |
---|
| 1187 | fi |
---|
[710] | 1188 | |
---|
| 1189 | exist=false |
---|
| 1190 | skip=false |
---|
| 1191 | if [ -f $2 ] ; then |
---|
| 1192 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1193 | exist=true |
---|
| 1194 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1195 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1196 | skip=true |
---|
| 1197 | else |
---|
| 1198 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1199 | skip=false |
---|
| 1200 | fi |
---|
| 1201 | fi |
---|
[544] | 1202 | # |
---|
[710] | 1203 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1204 | IGCM_sys_Chmod u+w $2 |
---|
| 1205 | fi |
---|
[705] | 1206 | |
---|
[710] | 1207 | if [ X${skip} = Xfalse ] ; then |
---|
| 1208 | i=0 |
---|
| 1209 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1210 | # USUAL WAY |
---|
| 1211 | #\cp $1 $2 > out_rsync 2>&1 |
---|
| 1212 | \mv $1 $2 > out_rsync 2>&1 |
---|
| 1213 | status=$? |
---|
| 1214 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1215 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[710] | 1216 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 1217 | sleep $DELAI |
---|
| 1218 | else |
---|
| 1219 | break |
---|
| 1220 | fi |
---|
| 1221 | (( i = i + 1 )) |
---|
| 1222 | done |
---|
| 1223 | fi |
---|
[544] | 1224 | |
---|
[710] | 1225 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1226 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1227 | cat out_rsync |
---|
| 1228 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
[257] | 1229 | else |
---|
[544] | 1230 | \rm out_rsync |
---|
[257] | 1231 | fi |
---|
[544] | 1232 | else |
---|
| 1233 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1234 | fi |
---|
| 1235 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1236 | return 0 |
---|
[257] | 1237 | } |
---|
| 1238 | |
---|
| 1239 | #D-#================================================== |
---|
| 1240 | #D-function IGCM_sys_Get |
---|
| 1241 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1242 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1243 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1244 | function IGCM_sys_Get { |
---|
[544] | 1245 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[257] | 1246 | |
---|
[719] | 1247 | typeset DEST dm_liste ifile target file_work |
---|
[676] | 1248 | typeset NB_ESSAI DELAI status i |
---|
[257] | 1249 | |
---|
[544] | 1250 | if ( $DEBUG_sys ) ; then |
---|
| 1251 | echo "IGCM_sys_Get :" $@ |
---|
| 1252 | fi |
---|
[676] | 1253 | |
---|
| 1254 | # number of tentative |
---|
| 1255 | NB_ESSAI=3 |
---|
| 1256 | # time delay between tentative |
---|
| 1257 | DELAI=2 |
---|
| 1258 | |
---|
[544] | 1259 | if [ $DRYRUN -le 2 ]; then |
---|
| 1260 | if [ X${1} = X'/l' ] ; then |
---|
| 1261 | # test if the first file is present in the old computation : |
---|
| 1262 | eval set +A dm_liste \${${2}} |
---|
| 1263 | else |
---|
| 1264 | eval set +A dm_liste ${1} |
---|
[257] | 1265 | fi |
---|
[544] | 1266 | eval DEST=\${${#}} |
---|
[257] | 1267 | |
---|
[544] | 1268 | #===================================================== |
---|
| 1269 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1270 | #===================================================== |
---|
[257] | 1271 | |
---|
[544] | 1272 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1273 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1274 | #if [ $? -eq 0 ] ; then |
---|
| 1275 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1276 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1277 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1278 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1279 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1280 | # return |
---|
| 1281 | # fi |
---|
| 1282 | #fi |
---|
[257] | 1283 | |
---|
[587] | 1284 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1285 | status=$? |
---|
| 1286 | if [ ${status} -gt 0 ] ; then |
---|
| 1287 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[544] | 1288 | cat out_rsync |
---|
| 1289 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1290 | fi |
---|
[257] | 1291 | |
---|
[717] | 1292 | #if [ ${status} -gt 0 ] ; then |
---|
[544] | 1293 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1294 | # cat out_rsync |
---|
| 1295 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1296 | # sleep 30 |
---|
| 1297 | # echo "We try another time" |
---|
[587] | 1298 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1299 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1300 | # status=$? |
---|
| 1301 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1302 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1303 | # cat out_rsync |
---|
| 1304 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[544] | 1305 | # fi |
---|
| 1306 | # else |
---|
| 1307 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1308 | # cat out_rsync |
---|
| 1309 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1310 | # fi |
---|
| 1311 | #fi |
---|
[520] | 1312 | |
---|
[719] | 1313 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1314 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1315 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1316 | |
---|
| 1317 | # #RSYNC WITH NFS USE |
---|
| 1318 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1319 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1320 | |
---|
| 1321 | # status=$? |
---|
| 1322 | # IGCM_sys_Rsync_out $status |
---|
| 1323 | |
---|
| 1324 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1325 | # (( status=status+$? )) |
---|
| 1326 | |
---|
[544] | 1327 | #USUAL WAY |
---|
| 1328 | if [ X${1} = X'/l' ] ; then |
---|
| 1329 | for target in ${dm_liste[*]} ; do |
---|
[676] | 1330 | local_file=$( basename ${target} ) |
---|
| 1331 | # test if the target file is present before the loop |
---|
| 1332 | IGCM_sys_TestFileArchive ${target} |
---|
[717] | 1333 | status=$? |
---|
| 1334 | if [ ${status} -gt 0 ] ; then |
---|
[705] | 1335 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[676] | 1336 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1337 | else |
---|
[719] | 1338 | i=0 |
---|
[676] | 1339 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1340 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1341 | status=$? |
---|
| 1342 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1343 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1344 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1345 | sleep $DELAI |
---|
| 1346 | else |
---|
| 1347 | break |
---|
| 1348 | fi |
---|
| 1349 | (( i = i + 1 )) |
---|
| 1350 | done |
---|
[719] | 1351 | if [ ${status} -gt 0 ] ; then |
---|
| 1352 | echo "IGCM_sys_Get : error" |
---|
| 1353 | cat out_rsync |
---|
| 1354 | \rm out_rsync |
---|
| 1355 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1356 | else |
---|
| 1357 | \rm out_rsync |
---|
| 1358 | fi |
---|
[676] | 1359 | fi |
---|
[544] | 1360 | done |
---|
| 1361 | else |
---|
[719] | 1362 | i=0 |
---|
| 1363 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1364 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1365 | status=$? |
---|
| 1366 | if [ ${status} -gt 0 ]; then |
---|
| 1367 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1368 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1369 | sleep $DELAI |
---|
| 1370 | else |
---|
| 1371 | break |
---|
| 1372 | fi |
---|
| 1373 | (( i = i + 1 )) |
---|
| 1374 | done |
---|
| 1375 | if [ ${status} -gt 0 ] ; then |
---|
| 1376 | echo "IGCM_sys_Get : error" |
---|
| 1377 | cat out_rsync |
---|
| 1378 | \rm out_rsync |
---|
| 1379 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1380 | else |
---|
| 1381 | \rm out_rsync |
---|
| 1382 | fi |
---|
[544] | 1383 | fi |
---|
| 1384 | else |
---|
| 1385 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1386 | fi |
---|
| 1387 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[257] | 1388 | } |
---|
| 1389 | |
---|
| 1390 | #D-#================================================== |
---|
[544] | 1391 | #D-function IGCM_sys_GetBuffer |
---|
| 1392 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1393 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1394 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1395 | function IGCM_sys_GetBuffer { |
---|
| 1396 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1397 | |
---|
[719] | 1398 | typeset DEST buf_liste ifile target file_work |
---|
| 1399 | typeset NB_ESSAI DELAI status i |
---|
[544] | 1400 | |
---|
| 1401 | if ( $DEBUG_sys ) ; then |
---|
| 1402 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1403 | fi |
---|
[719] | 1404 | |
---|
| 1405 | # number of tentative |
---|
| 1406 | NB_ESSAI=3 |
---|
| 1407 | # time delay between tentative |
---|
| 1408 | DELAI=2 |
---|
| 1409 | |
---|
[544] | 1410 | if [ $DRYRUN -le 2 ]; then |
---|
| 1411 | if [ X${1} = X'/l' ] ; then |
---|
| 1412 | # test if the first file is present in the old computation : |
---|
| 1413 | eval set +A buf_liste \${${2}} |
---|
| 1414 | else |
---|
| 1415 | eval set +A buf_liste ${1} |
---|
| 1416 | fi |
---|
| 1417 | eval DEST=\${${#}} |
---|
| 1418 | |
---|
| 1419 | #USUAL WAY |
---|
| 1420 | if [ X${1} = X'/l' ] ; then |
---|
| 1421 | for target in ${buf_liste[*]} ; do |
---|
[676] | 1422 | local_file=$( basename ${target} ) |
---|
[719] | 1423 | i=0 |
---|
| 1424 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1425 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1426 | status=$? |
---|
| 1427 | if [ ${status} -gt 0 ]; then |
---|
| 1428 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1429 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1430 | sleep $DELAI |
---|
| 1431 | else |
---|
| 1432 | break |
---|
| 1433 | fi |
---|
| 1434 | (( i = i + 1 )) |
---|
| 1435 | done |
---|
| 1436 | if [ ${status} -gt 0 ] ; then |
---|
| 1437 | echo "IGCM_sys_Get : error" |
---|
| 1438 | cat out_rsync |
---|
| 1439 | \rm out_rsync |
---|
| 1440 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1441 | else |
---|
| 1442 | \rm out_rsync |
---|
| 1443 | fi |
---|
[544] | 1444 | done |
---|
| 1445 | else |
---|
[719] | 1446 | i=0 |
---|
| 1447 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1448 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1449 | status=$? |
---|
| 1450 | if [ ${status} -gt 0 ]; then |
---|
| 1451 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1452 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1453 | sleep $DELAI |
---|
| 1454 | else |
---|
| 1455 | break |
---|
| 1456 | fi |
---|
| 1457 | (( i = i + 1 )) |
---|
| 1458 | done |
---|
| 1459 | if [ ${status} -gt 0 ] ; then |
---|
| 1460 | echo "IGCM_sys_Get : error" |
---|
| 1461 | cat out_rsync |
---|
| 1462 | \rm out_rsync |
---|
| 1463 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1464 | else |
---|
| 1465 | \rm out_rsync |
---|
| 1466 | fi |
---|
[544] | 1467 | fi |
---|
| 1468 | else |
---|
| 1469 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1470 | fi |
---|
| 1471 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1472 | } |
---|
| 1473 | |
---|
| 1474 | #D-#================================================== |
---|
| 1475 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1476 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1477 | #D-* Examples: |
---|
| 1478 | #D- |
---|
| 1479 | function IGCM_sys_GetDate_FichWork { |
---|
| 1480 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1481 | if ( $DEBUG_sys ) ; then |
---|
| 1482 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1483 | fi |
---|
| 1484 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1485 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1486 | } |
---|
| 1487 | |
---|
| 1488 | #D-#================================================== |
---|
| 1489 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[676] | 1490 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[544] | 1491 | #D-* Examples: |
---|
| 1492 | #D- |
---|
| 1493 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1494 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1495 | if ( $DEBUG_sys ) ; then |
---|
| 1496 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1497 | fi |
---|
| 1498 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1499 | } |
---|
| 1500 | |
---|
| 1501 | #D-#================================================== |
---|
[343] | 1502 | #D-function IGCM_sys_Dods_Rm |
---|
[676] | 1503 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
[343] | 1504 | #D-* Examples: |
---|
| 1505 | #D- |
---|
| 1506 | function IGCM_sys_Dods_Rm { |
---|
[544] | 1507 | if ( $DEBUG_sys ) ; then |
---|
| 1508 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1509 | fi |
---|
[717] | 1510 | typeset status |
---|
[544] | 1511 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1512 | |
---|
| 1513 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1514 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1515 | # echo "Nothing has been done." |
---|
| 1516 | # return |
---|
| 1517 | # fi |
---|
| 1518 | |
---|
[649] | 1519 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[717] | 1520 | status=$? |
---|
[676] | 1521 | |
---|
[717] | 1522 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1523 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1524 | # cat out_dods_rm |
---|
| 1525 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
[418] | 1526 | # else |
---|
[676] | 1527 | # rm out_dods_rm |
---|
[418] | 1528 | # fi |
---|
| 1529 | |
---|
[544] | 1530 | else |
---|
| 1531 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1532 | fi |
---|
[717] | 1533 | return $status |
---|
[343] | 1534 | } |
---|
| 1535 | |
---|
| 1536 | #D-#================================================== |
---|
| 1537 | #D-function IGCM_sys_Dods_Cp |
---|
| 1538 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1539 | #D-* Examples: |
---|
| 1540 | #D- |
---|
| 1541 | function IGCM_sys_Dods_Cp { |
---|
[544] | 1542 | if ( $DEBUG_sys ) ; then |
---|
| 1543 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1544 | fi |
---|
[717] | 1545 | typeset status |
---|
[544] | 1546 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1547 | |
---|
| 1548 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1549 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1550 | # echo "Nothing has been done." |
---|
| 1551 | # return |
---|
| 1552 | # fi |
---|
| 1553 | |
---|
[649] | 1554 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[717] | 1555 | status=$? |
---|
[544] | 1556 | |
---|
[717] | 1557 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1558 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1559 | # cat out_dods_cp |
---|
| 1560 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1561 | # else |
---|
| 1562 | # rm out_dods_cp |
---|
| 1563 | # fi |
---|
[418] | 1564 | |
---|
[544] | 1565 | else |
---|
| 1566 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1567 | fi |
---|
[717] | 1568 | return $status |
---|
[343] | 1569 | } |
---|
| 1570 | |
---|
| 1571 | #D-#================================================== |
---|
[257] | 1572 | #D-function IGCM_sys_Put_Dods |
---|
| 1573 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1574 | #D-* Examples: |
---|
| 1575 | #D- |
---|
| 1576 | function IGCM_sys_Put_Dods { |
---|
[544] | 1577 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1578 | if ( $DEBUG_sys ) ; then |
---|
| 1579 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1580 | fi |
---|
[717] | 1581 | #set -vx |
---|
| 1582 | typeset status |
---|
[544] | 1583 | if [ $DRYRUN = 0 ]; then |
---|
[587] | 1584 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1585 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1586 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1587 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
[544] | 1588 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1589 | return |
---|
[257] | 1590 | fi |
---|
| 1591 | |
---|
[587] | 1592 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1593 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1594 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1595 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1596 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1597 | return |
---|
| 1598 | fi |
---|
| 1599 | # |
---|
| 1600 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1601 | cd ${R_SAVE} |
---|
| 1602 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1603 | cd ${R_FIGR} |
---|
| 1604 | fi |
---|
| 1605 | |
---|
[544] | 1606 | IGCM_sys_Dods_Rm ${1} |
---|
| 1607 | IGCM_sys_Dods_Cp ${1} |
---|
[717] | 1608 | status=0 |
---|
[676] | 1609 | |
---|
[717] | 1610 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1611 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1612 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
[257] | 1613 | fi |
---|
[544] | 1614 | else |
---|
| 1615 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1616 | fi |
---|
| 1617 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[257] | 1618 | } |
---|
| 1619 | |
---|
| 1620 | ############################################################## |
---|
| 1621 | # REBUILD OPERATOR |
---|
| 1622 | |
---|
| 1623 | function IGCM_sys_rebuild { |
---|
[544] | 1624 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1625 | if ( $DEBUG_sys ) ; then |
---|
| 1626 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1627 | fi |
---|
[717] | 1628 | |
---|
[734] | 1629 | typeset NB_ESSAI DELAI status i firstArg |
---|
[717] | 1630 | # number of tentative |
---|
| 1631 | NB_ESSAI=3 |
---|
| 1632 | # time delay between tentative |
---|
| 1633 | DELAI=2 |
---|
| 1634 | |
---|
| 1635 | i=0 |
---|
| 1636 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[719] | 1637 | /home/cont003/p86ipsl/X86_64/bin/rebuild -f -o $@ > out_rsync 2>&1 |
---|
[717] | 1638 | status=$? |
---|
| 1639 | if [ ${status} -gt 0 ] ; then |
---|
| 1640 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1641 | cat out_rsync |
---|
| 1642 | \rm out_rsync |
---|
| 1643 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1644 | firstArg=${1} |
---|
| 1645 | \rm ${firstArg} |
---|
[733] | 1646 | sleep $DELAI |
---|
[717] | 1647 | else |
---|
| 1648 | \rm out_rsync |
---|
| 1649 | break |
---|
| 1650 | fi |
---|
| 1651 | (( i = i + 1 )) |
---|
| 1652 | done |
---|
| 1653 | |
---|
[725] | 1654 | if [ ${status} -gt 0 ] ; then |
---|
[717] | 1655 | echo "IGCM_sys_rebuild : rebuild error" |
---|
[544] | 1656 | IGCM_debug_Exit "rebuild" |
---|
| 1657 | fi |
---|
[257] | 1658 | |
---|
[544] | 1659 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[257] | 1660 | } |
---|
| 1661 | |
---|
[693] | 1662 | function IGCM_sys_rebuild_station { |
---|
| 1663 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
[695] | 1664 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
[693] | 1665 | if ( $DEBUG_sys ) ; then |
---|
| 1666 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1667 | fi |
---|
| 1668 | list_opt=$@ |
---|
| 1669 | |
---|
| 1670 | # Invert Axis : t,x -> x,t |
---|
| 1671 | # t,pres,x -> x,t,pres |
---|
| 1672 | # So that we can concatenate along x |
---|
| 1673 | i=0 |
---|
| 1674 | for file_in in ${list_opt} ; do |
---|
| 1675 | (( i = i + 1)) |
---|
| 1676 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1677 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1678 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1679 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1680 | done |
---|
| 1681 | |
---|
| 1682 | # Concatenate |
---|
[695] | 1683 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
[693] | 1684 | |
---|
| 1685 | # Re-ivert file |
---|
| 1686 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1687 | |
---|
[694] | 1688 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1689 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1690 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1691 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1692 | # BEGIN reordering |
---|
| 1693 | |
---|
| 1694 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1695 | # We isolate this in the code below: |
---|
| 1696 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1697 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1698 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1699 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1700 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1701 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1702 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1703 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1704 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1705 | # typeset -Z4 j4 |
---|
| 1706 | # typeset -Z3 j3 |
---|
| 1707 | |
---|
| 1708 | # unset list_opt |
---|
| 1709 | # set +A list_opt $@ |
---|
| 1710 | |
---|
| 1711 | # Filename after rebuild |
---|
| 1712 | # file_out=${list_opt[0]} |
---|
| 1713 | # Prefix of output files |
---|
| 1714 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1715 | # Number of procs |
---|
| 1716 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1717 | |
---|
| 1718 | # iProc=0 |
---|
| 1719 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1720 | # Array containing Station as a number |
---|
| 1721 | # unset proc_stn |
---|
| 1722 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1723 | # Number of stations produced by processor proc |
---|
| 1724 | # stationLast=${#proc_stn[*]} |
---|
| 1725 | # Proc number on 4 digits |
---|
| 1726 | # j4=${iProc} |
---|
| 1727 | # Init |
---|
| 1728 | # iStation=0 |
---|
| 1729 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1730 | # Station number on 3 digits |
---|
| 1731 | # j3=${proc_stn[${iStation}]} |
---|
| 1732 | # Extract station |
---|
| 1733 | # Invert Axis : t,x -> x,t |
---|
| 1734 | # t,pres,x -> x,t,pres |
---|
| 1735 | # So that we can concatenate along x |
---|
| 1736 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1737 | # (( iStation = iStation + 1 )) |
---|
| 1738 | # done |
---|
| 1739 | # (( iProc = iProc + 1 )) |
---|
| 1740 | # done |
---|
| 1741 | |
---|
| 1742 | # Concatenate all station along x |
---|
| 1743 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1744 | |
---|
| 1745 | # Re-invert file |
---|
| 1746 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1747 | |
---|
| 1748 | # END reordering |
---|
| 1749 | |
---|
[693] | 1750 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1751 | } |
---|
| 1752 | |
---|
[651] | 1753 | ############################################################ |
---|
| 1754 | # Check of space available on temporary filesytems |
---|
| 1755 | function IGCM_sys_check_quota { |
---|
| 1756 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1757 | if ( $DEBUG_sys ) ; then |
---|
| 1758 | echo "IGCM_sys_check_quota" |
---|
| 1759 | fi |
---|
| 1760 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1761 | } |
---|
| 1762 | |
---|
[257] | 1763 | ############################################################## |
---|
| 1764 | # NCO OPERATOR |
---|
| 1765 | |
---|
[377] | 1766 | function IGCM_sys_ncap2 { |
---|
[544] | 1767 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1768 | if ( $DEBUG_sys ) ; then |
---|
| 1769 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1770 | fi |
---|
[714] | 1771 | |
---|
| 1772 | typeset NB_ESSAI DELAI status i |
---|
| 1773 | # number of tentative |
---|
| 1774 | NB_ESSAI=3 |
---|
| 1775 | # time delay between tentative |
---|
| 1776 | DELAI=2 |
---|
| 1777 | |
---|
| 1778 | i=0 |
---|
| 1779 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1780 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 1781 | status=$? |
---|
| 1782 | if [ ${status} -gt 0 ] ; then |
---|
| 1783 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 1784 | cat out_rsync |
---|
| 1785 | \rm out_rsync |
---|
| 1786 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1787 | sleep $DELAI |
---|
[714] | 1788 | else |
---|
| 1789 | \rm out_rsync |
---|
| 1790 | break |
---|
| 1791 | fi |
---|
| 1792 | (( i = i + 1 )) |
---|
| 1793 | done |
---|
| 1794 | |
---|
| 1795 | if [ ${status} -gt 0 ] ; then |
---|
| 1796 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 1797 | IGCM_debug_Exit "ncap2" |
---|
[544] | 1798 | fi |
---|
[257] | 1799 | |
---|
[544] | 1800 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
[257] | 1801 | } |
---|
| 1802 | |
---|
[375] | 1803 | function IGCM_sys_ncatted { |
---|
[544] | 1804 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1805 | if ( $DEBUG_sys ) ; then |
---|
| 1806 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1807 | fi |
---|
[714] | 1808 | |
---|
| 1809 | typeset NB_ESSAI DELAI status i |
---|
| 1810 | # number of tentative |
---|
| 1811 | NB_ESSAI=3 |
---|
| 1812 | # time delay between tentative |
---|
| 1813 | DELAI=2 |
---|
| 1814 | |
---|
| 1815 | i=0 |
---|
| 1816 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1817 | ncatted "$@" > out_rsync 2>&1 |
---|
| 1818 | status=$? |
---|
| 1819 | if [ ${status} -gt 0 ] ; then |
---|
| 1820 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 1821 | cat out_rsync |
---|
| 1822 | \rm out_rsync |
---|
| 1823 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1824 | sleep $DELAI |
---|
[714] | 1825 | else |
---|
| 1826 | \rm out_rsync |
---|
| 1827 | break |
---|
| 1828 | fi |
---|
| 1829 | (( i = i + 1 )) |
---|
| 1830 | done |
---|
| 1831 | |
---|
| 1832 | if [ ${status} -gt 0 ] ; then |
---|
| 1833 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 1834 | IGCM_debug_Exit "ncatted" |
---|
[544] | 1835 | fi |
---|
[257] | 1836 | |
---|
[544] | 1837 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[375] | 1838 | } |
---|
[257] | 1839 | |
---|
| 1840 | function IGCM_sys_ncbo { |
---|
[544] | 1841 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1842 | if ( $DEBUG_sys ) ; then |
---|
| 1843 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1844 | fi |
---|
[714] | 1845 | |
---|
| 1846 | typeset NB_ESSAI DELAI status i |
---|
| 1847 | # number of tentative |
---|
| 1848 | NB_ESSAI=3 |
---|
| 1849 | # time delay between tentative |
---|
| 1850 | DELAI=2 |
---|
| 1851 | |
---|
| 1852 | i=0 |
---|
| 1853 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1854 | ncbo $@ > out_rsync 2>&1 |
---|
| 1855 | status=$? |
---|
| 1856 | if [ ${status} -gt 0 ] ; then |
---|
| 1857 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 1858 | cat out_rsync |
---|
| 1859 | \rm out_rsync |
---|
| 1860 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1861 | sleep $DELAI |
---|
[714] | 1862 | else |
---|
| 1863 | \rm out_rsync |
---|
| 1864 | break |
---|
| 1865 | fi |
---|
| 1866 | (( i = i + 1 )) |
---|
| 1867 | done |
---|
| 1868 | |
---|
| 1869 | if [ ${status} -gt 0 ] ; then |
---|
| 1870 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 1871 | IGCM_debug_Exit "ncbo" |
---|
[544] | 1872 | fi |
---|
[257] | 1873 | |
---|
[544] | 1874 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[257] | 1875 | } |
---|
| 1876 | |
---|
| 1877 | function IGCM_sys_ncdiff { |
---|
[544] | 1878 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1879 | if ( $DEBUG_sys ) ; then |
---|
| 1880 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1881 | fi |
---|
[714] | 1882 | |
---|
| 1883 | typeset NB_ESSAI DELAI status i |
---|
| 1884 | # number of tentative |
---|
| 1885 | NB_ESSAI=3 |
---|
| 1886 | # time delay between tentative |
---|
| 1887 | DELAI=2 |
---|
| 1888 | |
---|
| 1889 | i=0 |
---|
| 1890 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1891 | ncdiff $@ > out_rsync 2>&1 |
---|
| 1892 | status=$? |
---|
| 1893 | if [ ${status} -gt 0 ] ; then |
---|
| 1894 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 1895 | cat out_rsync |
---|
| 1896 | \rm out_rsync |
---|
| 1897 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1898 | sleep $DELAI |
---|
[714] | 1899 | else |
---|
| 1900 | \rm out_rsync |
---|
| 1901 | break |
---|
| 1902 | fi |
---|
| 1903 | (( i = i + 1 )) |
---|
| 1904 | done |
---|
| 1905 | |
---|
| 1906 | if [ ${status} -gt 0 ] ; then |
---|
| 1907 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 1908 | IGCM_debug_Exit "ncdiff" |
---|
[544] | 1909 | fi |
---|
[257] | 1910 | |
---|
[544] | 1911 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[257] | 1912 | } |
---|
| 1913 | |
---|
| 1914 | function IGCM_sys_ncea { |
---|
[544] | 1915 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 1916 | if ( $DEBUG_sys ) ; then |
---|
| 1917 | echo "IGCM_sys_ncea :" $@ |
---|
| 1918 | fi |
---|
[714] | 1919 | |
---|
| 1920 | typeset NB_ESSAI DELAI status i |
---|
| 1921 | # number of tentative |
---|
| 1922 | NB_ESSAI=3 |
---|
| 1923 | # time delay between tentative |
---|
| 1924 | DELAI=2 |
---|
| 1925 | |
---|
| 1926 | i=0 |
---|
| 1927 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1928 | ncea $@ > out_rsync 2>&1 |
---|
| 1929 | status=$? |
---|
| 1930 | if [ ${status} -gt 0 ] ; then |
---|
| 1931 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 1932 | cat out_rsync |
---|
| 1933 | \rm out_rsync |
---|
| 1934 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1935 | sleep $DELAI |
---|
[714] | 1936 | else |
---|
| 1937 | \rm out_rsync |
---|
| 1938 | break |
---|
| 1939 | fi |
---|
| 1940 | (( i = i + 1 )) |
---|
| 1941 | done |
---|
| 1942 | |
---|
| 1943 | if [ ${status} -gt 0 ] ; then |
---|
| 1944 | echo "IGCM_sys_ncea : ncea error" |
---|
| 1945 | IGCM_debug_Exit "ncea" |
---|
[544] | 1946 | fi |
---|
[257] | 1947 | |
---|
[544] | 1948 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[257] | 1949 | } |
---|
| 1950 | |
---|
| 1951 | function IGCM_sys_ncecat { |
---|
[544] | 1952 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 1953 | if ( $DEBUG_sys ) ; then |
---|
| 1954 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1955 | fi |
---|
[714] | 1956 | |
---|
| 1957 | typeset NB_ESSAI DELAI status i |
---|
| 1958 | # number of tentative |
---|
| 1959 | NB_ESSAI=3 |
---|
| 1960 | # time delay between tentative |
---|
| 1961 | DELAI=2 |
---|
| 1962 | |
---|
| 1963 | i=0 |
---|
| 1964 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1965 | ncecat $@ > out_rsync 2>&1 |
---|
| 1966 | status=$? |
---|
| 1967 | if [ ${status} -gt 0 ] ; then |
---|
| 1968 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 1969 | cat out_rsync |
---|
| 1970 | \rm out_rsync |
---|
| 1971 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1972 | sleep $DELAI |
---|
[714] | 1973 | else |
---|
| 1974 | \rm out_rsync |
---|
| 1975 | break |
---|
| 1976 | fi |
---|
| 1977 | (( i = i + 1 )) |
---|
| 1978 | done |
---|
| 1979 | |
---|
| 1980 | if [ ${status} -gt 0 ] ; then |
---|
| 1981 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 1982 | IGCM_debug_Exit "ncecat" |
---|
[544] | 1983 | fi |
---|
[257] | 1984 | |
---|
[544] | 1985 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[257] | 1986 | } |
---|
| 1987 | |
---|
| 1988 | function IGCM_sys_ncflint { |
---|
[544] | 1989 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 1990 | if ( $DEBUG_sys ) ; then |
---|
| 1991 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1992 | fi |
---|
[714] | 1993 | |
---|
| 1994 | typeset NB_ESSAI DELAI status i |
---|
| 1995 | # number of tentative |
---|
| 1996 | NB_ESSAI=3 |
---|
| 1997 | # time delay between tentative |
---|
| 1998 | DELAI=2 |
---|
| 1999 | |
---|
| 2000 | i=0 |
---|
| 2001 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2002 | ncflint $@ > out_rsync 2>&1 |
---|
| 2003 | status=$? |
---|
| 2004 | if [ ${status} -gt 0 ] ; then |
---|
| 2005 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 2006 | cat out_rsync |
---|
| 2007 | \rm out_rsync |
---|
| 2008 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2009 | sleep $DELAI |
---|
[714] | 2010 | else |
---|
| 2011 | \rm out_rsync |
---|
| 2012 | break |
---|
| 2013 | fi |
---|
| 2014 | (( i = i + 1 )) |
---|
| 2015 | done |
---|
| 2016 | |
---|
| 2017 | if [ ${status} -gt 0 ] ; then |
---|
| 2018 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2019 | IGCM_debug_Exit "ncflint" |
---|
[544] | 2020 | fi |
---|
[257] | 2021 | |
---|
[544] | 2022 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[257] | 2023 | } |
---|
| 2024 | |
---|
| 2025 | function IGCM_sys_ncks { |
---|
[544] | 2026 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2027 | if ( $DEBUG_sys ) ; then |
---|
| 2028 | echo "IGCM_sys_ncks :" $@ |
---|
| 2029 | fi |
---|
[714] | 2030 | |
---|
| 2031 | typeset NB_ESSAI DELAI status i |
---|
| 2032 | # number of tentative |
---|
| 2033 | NB_ESSAI=3 |
---|
| 2034 | # time delay between tentative |
---|
| 2035 | DELAI=2 |
---|
| 2036 | |
---|
| 2037 | i=0 |
---|
| 2038 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2039 | ncks $@ > out_rsync 2>&1 |
---|
| 2040 | status=$? |
---|
| 2041 | if [ ${status} -gt 0 ] ; then |
---|
| 2042 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2043 | cat out_rsync |
---|
| 2044 | \rm out_rsync |
---|
| 2045 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2046 | sleep $DELAI |
---|
[714] | 2047 | else |
---|
| 2048 | \rm out_rsync |
---|
| 2049 | break |
---|
| 2050 | fi |
---|
| 2051 | (( i = i + 1 )) |
---|
| 2052 | done |
---|
| 2053 | |
---|
| 2054 | if [ ${status} -gt 0 ] ; then |
---|
| 2055 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2056 | IGCM_debug_Exit "ncks" |
---|
[544] | 2057 | fi |
---|
[257] | 2058 | |
---|
[544] | 2059 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[257] | 2060 | } |
---|
| 2061 | |
---|
| 2062 | function IGCM_sys_ncpdq { |
---|
[544] | 2063 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2064 | if ( $DEBUG_sys ) ; then |
---|
| 2065 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2066 | fi |
---|
[714] | 2067 | |
---|
| 2068 | typeset NB_ESSAI DELAI status i |
---|
| 2069 | # number of tentative |
---|
| 2070 | NB_ESSAI=3 |
---|
| 2071 | # time delay between tentative |
---|
| 2072 | DELAI=2 |
---|
| 2073 | |
---|
| 2074 | i=0 |
---|
| 2075 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2076 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2077 | status=$? |
---|
| 2078 | if [ ${status} -gt 0 ] ; then |
---|
| 2079 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2080 | cat out_rsync |
---|
| 2081 | \rm out_rsync |
---|
| 2082 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2083 | sleep $DELAI |
---|
[714] | 2084 | else |
---|
| 2085 | \rm out_rsync |
---|
| 2086 | break |
---|
| 2087 | fi |
---|
| 2088 | (( i = i + 1 )) |
---|
| 2089 | done |
---|
| 2090 | |
---|
| 2091 | if [ ${status} -gt 0 ] ; then |
---|
| 2092 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2093 | IGCM_debug_Exit "ncpdq" |
---|
[544] | 2094 | fi |
---|
[257] | 2095 | |
---|
[544] | 2096 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[257] | 2097 | } |
---|
| 2098 | |
---|
| 2099 | function IGCM_sys_ncra { |
---|
[544] | 2100 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2101 | if ( $DEBUG_sys ) ; then |
---|
| 2102 | echo "IGCM_sys_ncra :" $@ |
---|
| 2103 | fi |
---|
[714] | 2104 | |
---|
| 2105 | typeset NB_ESSAI DELAI status i |
---|
| 2106 | # number of tentative |
---|
| 2107 | NB_ESSAI=3 |
---|
| 2108 | # time delay between tentative |
---|
| 2109 | DELAI=2 |
---|
| 2110 | |
---|
| 2111 | i=0 |
---|
| 2112 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2113 | ncra $@ > out_rsync 2>&1 |
---|
| 2114 | status=$? |
---|
| 2115 | if [ ${status} -gt 0 ] ; then |
---|
| 2116 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2117 | cat out_rsync |
---|
| 2118 | \rm out_rsync |
---|
| 2119 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2120 | sleep $DELAI |
---|
[714] | 2121 | else |
---|
| 2122 | \rm out_rsync |
---|
| 2123 | break |
---|
| 2124 | fi |
---|
| 2125 | (( i = i + 1 )) |
---|
| 2126 | done |
---|
| 2127 | |
---|
| 2128 | if [ ${status} -gt 0 ] ; then |
---|
| 2129 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2130 | IGCM_debug_Exit "ncra" |
---|
[544] | 2131 | fi |
---|
[257] | 2132 | |
---|
[544] | 2133 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[257] | 2134 | } |
---|
| 2135 | |
---|
| 2136 | function IGCM_sys_ncrcat { |
---|
[544] | 2137 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2138 | if ( $DEBUG_sys ) ; then |
---|
| 2139 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2140 | fi |
---|
[714] | 2141 | |
---|
| 2142 | typeset NB_ESSAI DELAI status i |
---|
| 2143 | # number of tentative |
---|
| 2144 | NB_ESSAI=3 |
---|
| 2145 | # time delay between tentative |
---|
| 2146 | DELAI=2 |
---|
| 2147 | |
---|
| 2148 | i=0 |
---|
| 2149 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2150 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2151 | status=$? |
---|
| 2152 | if [ ${status} -gt 0 ] ; then |
---|
| 2153 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2154 | cat out_rsync |
---|
| 2155 | \rm out_rsync |
---|
| 2156 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2157 | sleep $DELAI |
---|
[714] | 2158 | else |
---|
| 2159 | \rm out_rsync |
---|
| 2160 | break |
---|
| 2161 | fi |
---|
| 2162 | (( i = i + 1 )) |
---|
| 2163 | done |
---|
| 2164 | |
---|
| 2165 | if [ ${status} -gt 0 ] ; then |
---|
| 2166 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2167 | #IGCM_debug_Exit "ncrcat" |
---|
[544] | 2168 | fi |
---|
[257] | 2169 | |
---|
[544] | 2170 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[257] | 2171 | } |
---|
| 2172 | |
---|
| 2173 | function IGCM_sys_ncrename { |
---|
[544] | 2174 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2175 | if ( $DEBUG_sys ) ; then |
---|
| 2176 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2177 | fi |
---|
[714] | 2178 | |
---|
| 2179 | typeset NB_ESSAI DELAI status i |
---|
| 2180 | # number of tentative |
---|
| 2181 | NB_ESSAI=3 |
---|
| 2182 | # time delay between tentative |
---|
| 2183 | DELAI=2 |
---|
| 2184 | |
---|
| 2185 | i=0 |
---|
| 2186 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2187 | ncrename $@ > out_rsync 2>&1 |
---|
| 2188 | status=$? |
---|
| 2189 | if [ ${status} -gt 0 ] ; then |
---|
| 2190 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2191 | cat out_rsync |
---|
| 2192 | \rm out_rsync |
---|
| 2193 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2194 | sleep $DELAI |
---|
[714] | 2195 | else |
---|
| 2196 | \rm out_rsync |
---|
| 2197 | break |
---|
| 2198 | fi |
---|
| 2199 | (( i = i + 1 )) |
---|
| 2200 | done |
---|
| 2201 | |
---|
| 2202 | if [ ${status} -gt 0 ] ; then |
---|
| 2203 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2204 | IGCM_debug_Exit "ncrename" |
---|
[544] | 2205 | fi |
---|
[257] | 2206 | |
---|
[544] | 2207 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[257] | 2208 | } |
---|
| 2209 | |
---|
| 2210 | function IGCM_sys_ncwa { |
---|
[544] | 2211 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2212 | if ( $DEBUG_sys ) ; then |
---|
| 2213 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2214 | fi |
---|
[714] | 2215 | |
---|
| 2216 | typeset NB_ESSAI DELAI status i |
---|
| 2217 | # number of tentative |
---|
| 2218 | NB_ESSAI=3 |
---|
| 2219 | # time delay between tentative |
---|
| 2220 | DELAI=2 |
---|
| 2221 | |
---|
| 2222 | i=0 |
---|
| 2223 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2224 | ncwa $@ > out_rsync 2>&1 |
---|
| 2225 | status=$? |
---|
| 2226 | if [ ${status} -gt 0 ] ; then |
---|
| 2227 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2228 | cat out_rsync |
---|
| 2229 | \rm out_rsync |
---|
| 2230 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2231 | sleep $DELAI |
---|
[714] | 2232 | else |
---|
| 2233 | \rm out_rsync |
---|
| 2234 | break |
---|
| 2235 | fi |
---|
| 2236 | (( i = i + 1 )) |
---|
| 2237 | done |
---|
| 2238 | |
---|
| 2239 | if [ ${status} -gt 0 ] ; then |
---|
| 2240 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2241 | IGCM_debug_Exit "ncwa" |
---|
[544] | 2242 | fi |
---|
[257] | 2243 | |
---|
[544] | 2244 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[257] | 2245 | } |
---|
| 2246 | |
---|
[285] | 2247 | ############################################################## |
---|
| 2248 | # CDO OPERATOR |
---|
| 2249 | |
---|
| 2250 | function IGCM_sys_cdo { |
---|
[544] | 2251 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 2252 | if ( $DEBUG_sys ) ; then |
---|
| 2253 | echo "IGCM_sys_cdo :" $@ |
---|
| 2254 | fi |
---|
[714] | 2255 | |
---|
| 2256 | typeset status |
---|
| 2257 | |
---|
| 2258 | \cdo $@ > out_rsync 2>&1 |
---|
| 2259 | status=$? |
---|
| 2260 | if [ ${status} -gt 0 ] ; then |
---|
| 2261 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2262 | cat out_rsync |
---|
| 2263 | \rm out_rsync |
---|
[544] | 2264 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2265 | return 1 |
---|
| 2266 | else |
---|
| 2267 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2268 | return 0 |
---|
| 2269 | fi |
---|
[285] | 2270 | |
---|
[544] | 2271 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[285] | 2272 | } |
---|
| 2273 | |
---|
[257] | 2274 | ############################################################ |
---|
| 2275 | # Activate Running Environnment Variables |
---|
| 2276 | |
---|
| 2277 | function IGCM_sys_activ_variables { |
---|
[544] | 2278 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 2279 | if ( $DEBUG_sys ) ; then |
---|
| 2280 | echo "IGCM_sys_activ_variables" |
---|
| 2281 | fi |
---|
| 2282 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[257] | 2283 | } |
---|
| 2284 | |
---|
| 2285 | ############################################################ |
---|
| 2286 | # Desactivate Running Environnment Variables |
---|
| 2287 | |
---|
| 2288 | function IGCM_sys_desactiv_variables { |
---|
[544] | 2289 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 2290 | if ( $DEBUG_sys ) ; then |
---|
| 2291 | echo "IGCM_sys_desactiv_variables" |
---|
| 2292 | fi |
---|
| 2293 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[257] | 2294 | } |
---|
| 2295 | |
---|
| 2296 | ############################################################ |
---|
| 2297 | # Build run file |
---|
| 2298 | |
---|
| 2299 | function IGCM_sys_build_run_file { |
---|
[544] | 2300 | IGCM_debug_PushStack "IGCM_sys_build_run_file" |
---|
| 2301 | if ( $DEBUG_sys ) ; then |
---|
| 2302 | echo "IGCM_sys_build_run_file" |
---|
| 2303 | fi |
---|
| 2304 | IGCM_debug_PopStack "IGCM_sys_build_run_file" |
---|
[257] | 2305 | } |
---|