[676] | 1 | #!/bin/ksh |
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[257] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[257] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[676] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[257] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Mercure X64 |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[676] | 24 | #D- This ksh library if a layer under some usefull |
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[257] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[544] | 64 | # Host and user names |
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[257] | 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | |
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| 70 | #D- |
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| 71 | #D-#================================================== |
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| 72 | #D-Program used in libIGCM |
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| 73 | #D-#================================================== |
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| 74 | |
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[742] | 75 | # Submit command |
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| 76 | typeset SUBMIT=${SUBMIT:=qsub} |
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[257] | 77 | # rsync with path |
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| 78 | typeset -r RSYNC=/usr/bin/rsync |
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| 79 | # RSYNC_opt args to rsync |
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| 80 | typeset -r RSYNC_opt="-va" |
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| 81 | # ie storage filesystem |
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| 82 | typeset -r RHOST=mercure |
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| 83 | |
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| 84 | #==================================================== |
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[305] | 85 | # Set environment tools (ferret, nco, cdo) |
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| 86 | #==================================================== |
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[257] | 87 | . /home/cont003/p86ipsl/.atlas_env_mercure01_ksh |
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| 88 | |
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| 89 | #==================================================== |
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[736] | 90 | # AddNoise PATH |
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| 91 | #==================================================== |
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| 92 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X86_64/bin |
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| 93 | |
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| 94 | #==================================================== |
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[257] | 95 | # Host specific DIRECTORIES |
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| 96 | #==================================================== |
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| 97 | |
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| 98 | #==================================================== |
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| 99 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 100 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 101 | |
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| 102 | #==================================================== |
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[676] | 103 | # For interactive jobs on mercure |
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[257] | 104 | PBS_O_WORKDIR=${PBS_O_WORKDIR:=$(pwd)} |
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| 105 | |
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| 106 | #==================================================== |
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| 107 | #- SUBMIT_DIR : submission dir |
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| 108 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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| 109 | |
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| 110 | #==================================================== |
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| 111 | #- IN |
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[545] | 112 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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[717] | 113 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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[257] | 114 | |
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| 115 | #==================================================== |
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[725] | 116 | #- ARCHIVE (dedicated to large files) |
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| 117 | typeset ARCHIVE=${CCCSTOREDIR} |
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| 118 | |
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| 119 | #==================================================== |
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| 120 | #- STORAGE (dedicated to small/medium files) |
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| 121 | typeset STORAGE=${CCCWORKDIR} |
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| 122 | |
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| 123 | #==================================================== |
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[544] | 124 | #- R_OUT |
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[725] | 125 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[257] | 126 | |
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| 127 | #==================================================== |
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[587] | 128 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[725] | 129 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[587] | 130 | |
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| 131 | #==================================================== |
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[544] | 132 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 133 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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[257] | 134 | |
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| 135 | #==================================================== |
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[544] | 136 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 137 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 138 | |
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| 139 | #==================================================== |
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[257] | 140 | #- OUT_POST |
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| 141 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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| 142 | |
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| 143 | #==================================================== |
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| 144 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[615] | 145 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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[257] | 146 | |
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| 147 | #==================================================== |
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| 148 | #- Max number of arguments passed to nco operator or demigration command |
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| 149 | UNIX_MAX_LIMIT=360 |
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| 150 | |
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[650] | 151 | #- set PackDefault true on NEC front-end |
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| 152 | PackDefault=true |
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| 153 | |
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[257] | 154 | #D-#================================================== |
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[725] | 155 | #D-function IGCM_sys_ChangeArchive |
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| 156 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
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| 157 | #D-* Examples: |
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| 158 | #D- |
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| 159 | function IGCM_sys_ChangeArchive { |
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| 160 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
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| 161 | |
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[743] | 162 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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| 163 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[725] | 164 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
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| 165 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
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| 166 | |
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| 167 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
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| 168 | } |
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| 169 | |
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| 170 | #D-#================================================== |
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[257] | 171 | #D-function IGCM_sys_RshMaster |
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| 172 | #D-* Purpose: Just a fake command to wrapp |
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| 173 | #D- IGCM_card call in post-treatment |
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| 174 | #D- Ulam do not see brodie filesystem |
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| 175 | #D- Cesium do not see all mercure filesystem |
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| 176 | #D- That's why we need this hack. |
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| 177 | #D-* Examples: |
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| 178 | #D- |
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| 179 | function IGCM_sys_RshMaster { |
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[544] | 180 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 181 | /bin/ksh <<-EOF |
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[257] | 182 | export libIGCM=${libIGCM} |
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| 183 | export DEBUG_debug=${DEBUG_debug} |
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| 184 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 185 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 186 | ${@} |
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| 187 | EOF |
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[544] | 188 | if [ $? -gt 0 ] ; then |
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| 189 | echo "IGCM_sys_RshMaster : erreur." |
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| 190 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 191 | fi |
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| 192 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[257] | 193 | } |
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| 194 | |
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| 195 | #D-#================================================== |
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| 196 | #D-function IGCM_sys_RshArchive |
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| 197 | #D-* Purpose: Archive rsh command |
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| 198 | #D-* Examples: |
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| 199 | #D- |
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| 200 | function IGCM_sys_RshArchive { |
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[544] | 201 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 202 | /bin/ksh <<-EOF |
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[257] | 203 | ${@} |
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| 204 | EOF |
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[544] | 205 | if [ $? -gt 0 ] ; then |
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| 206 | echo "IGCM_sys_RshArchive : erreur." |
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| 207 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 208 | fi |
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| 209 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[257] | 210 | } |
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| 211 | |
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| 212 | #D-#================================================== |
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| 213 | #D-function IGCM_sys_RshPost |
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[343] | 214 | #D-* Purpose: Post-process rsh command |
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[257] | 215 | #D-* Examples: |
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| 216 | #D- |
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| 217 | function IGCM_sys_RshPost { |
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[544] | 218 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 219 | if ( $DEBUG_sys ) ; then |
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| 220 | echo "IGCM_sys_RshPost :" $@ |
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| 221 | fi |
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| 222 | /bin/ksh ${@} |
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| 223 | if [ $? -gt 0 ] ; then |
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| 224 | echo "IGCM_sys_RshPost : erreur." |
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| 225 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 226 | fi |
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| 227 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[257] | 228 | } |
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| 229 | |
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| 230 | #D-#================================================== |
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[442] | 231 | #D-function IGCM_sys_SendMail |
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| 232 | #D-* Purpose: Send mail when simulation is over |
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| 233 | #D-* Examples: |
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| 234 | #D- |
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| 235 | function IGCM_sys_SendMail { |
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[544] | 236 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 237 | if ( $DEBUG_sys ) ; then |
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| 238 | echo "IGCM_sys_SendMail :" $@ |
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| 239 | fi |
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[442] | 240 | |
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[544] | 241 | if ( ${ExitFlag} ) ; then |
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| 242 | status=failed |
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| 243 | else |
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| 244 | status=completed |
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| 245 | fi |
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[676] | 246 | |
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[544] | 247 | cat << END_MAIL > job_end.mail |
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[442] | 248 | Dear ${LOGIN}, |
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| 249 | |
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[452] | 250 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[442] | 251 | Job started : ${DateBegin} |
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| 252 | Job ended : ${DateEnd} |
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| 253 | Output files are available in ${R_SAVE} |
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[452] | 254 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[442] | 255 | END_MAIL |
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| 256 | |
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[544] | 257 | if [ X"${config_UserChoices_MailName}" != X ] ; then |
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| 258 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 259 | elif [ -f ~/.forward ] ; then |
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| 260 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 261 | else |
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| 262 | mailx -s "${config_UserChoices_JobName} ${status}" ${LOGIN} < job_end.mail |
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| 263 | fi |
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[442] | 264 | |
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[544] | 265 | if [ $? -gt 0 ] ; then |
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| 266 | echo "IGCM_sys_SendMail : erreur." |
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| 267 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 268 | fi |
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| 269 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[442] | 270 | } |
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| 271 | |
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| 272 | #D-#================================================== |
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[257] | 273 | #D-function IGCM_sys_Mkdir |
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| 274 | #D-* Purpose: Master locale mkdir command |
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| 275 | #D-* Examples: |
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| 276 | #D- |
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| 277 | function IGCM_sys_Mkdir { |
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[544] | 278 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 279 | if ( $DEBUG_sys ) ; then |
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| 280 | echo "IGCM_sys_Mkdir :" $@ |
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| 281 | fi |
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| 282 | if [ ! -d ${1} ]; then |
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| 283 | \mkdir -p $1 |
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| 284 | if [ $? -gt 0 ] ; then |
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| 285 | echo "IGCM_sys_Mkdir : erreur." |
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| 286 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[257] | 287 | fi |
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[544] | 288 | fi |
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| 289 | # vérification : |
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| 290 | if [ ! -d ${1} ] ; then |
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| 291 | echo "IGCM_sys_Mkdir : erreur." |
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| 292 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 293 | fi |
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| 294 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[257] | 295 | } |
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| 296 | |
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| 297 | #D-#================================================== |
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| 298 | #D-function IGCM_sys_MkdirArchive |
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| 299 | #D-* Purpose: Mkdir on Archive |
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| 300 | #D-* Examples: |
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| 301 | #D- |
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| 302 | function IGCM_sys_MkdirArchive { |
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[544] | 303 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 304 | if ( $DEBUG_sys ) ; then |
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| 305 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 306 | fi |
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| 307 | #- creation de repertoire sur le serveur fichier |
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[676] | 308 | if [ ! -d ${1} ]; then |
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[544] | 309 | \mkdir -p $1 |
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| 310 | if [ $? -gt 0 ] ; then |
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| 311 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 312 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[257] | 313 | fi |
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[544] | 314 | fi |
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| 315 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[257] | 316 | } |
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| 317 | |
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| 318 | #D-#================================================== |
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| 319 | #D-function IGCM_sys_MkdirWork |
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| 320 | #D-* Purpose: Mkdir on Work |
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| 321 | #D-* Examples: |
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| 322 | #D- |
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| 323 | function IGCM_sys_MkdirWork { |
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[544] | 324 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 325 | if ( $DEBUG_sys ) ; then |
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| 326 | echo "IGCM_sys_MkdirWork :" $@ |
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| 327 | fi |
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| 328 | #- creation de repertoire sur le serveur fichier |
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[676] | 329 | if [ ! -d ${1} ]; then |
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[544] | 330 | \mkdir -p $1 |
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| 331 | if [ $? -gt 0 ] ; then |
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| 332 | echo "IGCM_sys_MkdirWork : erreur." |
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| 333 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[257] | 334 | fi |
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[544] | 335 | fi |
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| 336 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[257] | 337 | } |
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| 338 | |
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| 339 | #D-#================================================== |
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| 340 | #D-function IGCM_sys_Cd |
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| 341 | #D-* Purpose: master cd command |
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| 342 | #D-* Examples: |
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| 343 | #D- |
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| 344 | function IGCM_sys_Cd { |
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[544] | 345 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 346 | if ( $DEBUG_sys ) ; then |
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| 347 | echo "IGCM_sys_Cd :" $@ |
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| 348 | fi |
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| 349 | \cd $1 |
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| 350 | if [ $? -gt 0 ] ; then |
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| 351 | echo "IGCM_sys_Cd : erreur." |
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| 352 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 353 | fi |
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| 354 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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[257] | 355 | } |
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| 356 | |
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| 357 | #D-#================================================== |
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| 358 | #D-function IGCM_sys_Chmod |
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| 359 | #D-* Purpose: Chmod |
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| 360 | #D-* Examples: |
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| 361 | #D- |
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| 362 | function IGCM_sys_Chmod { |
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[544] | 363 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 364 | if ( $DEBUG_sys ) ; then |
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| 365 | echo "IGCM_sys_Chmod :" $@ |
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| 366 | fi |
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| 367 | if [ $DRYRUN -le 1 ]; then |
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| 368 | \chmod $@ |
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| 369 | if [ $? -gt 0 ] ; then |
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| 370 | echo "IGCM_sys_Chmod : erreur." |
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| 371 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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[257] | 372 | fi |
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[544] | 373 | else |
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| 374 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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| 375 | fi |
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| 376 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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[257] | 377 | } |
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| 378 | |
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| 379 | #D-#================================================== |
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| 380 | #D-function IGCM_sys_FileSize |
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| 381 | #D-* Purpose: Filesize |
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| 382 | #D-* Examples: |
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| 383 | #D- |
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| 384 | function IGCM_sys_FileSize { |
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[544] | 385 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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[257] | 386 | |
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[544] | 387 | typeset sizeF |
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| 388 | set +A sizeF -- $( ls -la ${1} ) |
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| 389 | if [ $? -gt 0 ] ; then |
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| 390 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 391 | fi |
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| 392 | eval ${2}=${sizeF[4]} |
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[257] | 393 | |
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[544] | 394 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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[257] | 395 | } |
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| 396 | |
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| 397 | #D-#================================================== |
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| 398 | #D-function IGCM_sys_TestDir |
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| 399 | #D-* Purpose: Test Directory that must exists |
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| 400 | #D-* Examples: |
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| 401 | #D- |
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| 402 | function IGCM_sys_TestDir { |
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[544] | 403 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 404 | if ( $DEBUG_sys ) ; then |
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| 405 | echo "IGCM_sys_TestDir :" $@ |
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| 406 | fi |
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| 407 | typeset ExistFlag |
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| 408 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 409 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[257] | 410 | |
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[544] | 411 | return ${ExistFlag} |
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[257] | 412 | } |
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| 413 | |
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| 414 | #D-#================================================== |
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| 415 | #D-function IGCM_sys_TestDirArchive |
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| 416 | #D-* Purpose: Test Directory that must exists on Archive |
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| 417 | #D-* Examples: |
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| 418 | #D- |
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| 419 | function IGCM_sys_TestDirArchive { |
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[544] | 420 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 421 | if ( $DEBUG_sys ) ; then |
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| 422 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 423 | fi |
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| 424 | typeset ExistFlag |
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| 425 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 426 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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[257] | 427 | |
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[544] | 428 | return ${ExistFlag} |
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[257] | 429 | } |
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| 430 | |
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| 431 | #D-#================================================== |
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[548] | 432 | #D-function IGCM_sys_IsFileArchived |
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| 433 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 434 | #D-* Examples: |
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| 435 | #D- |
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| 436 | function IGCM_sys_IsFileArchived { |
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| 437 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 438 | if ( $DEBUG_sys ) ; then |
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| 439 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 440 | fi |
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| 441 | typeset IsArchivedFlag |
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[618] | 442 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
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[548] | 443 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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| 444 | |
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| 445 | return ${IsArchivedFlag} |
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| 446 | } |
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| 447 | |
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| 448 | #D-#================================================== |
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[257] | 449 | #D-function IGCM_sys_TestFileArchive |
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| 450 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 451 | #D-* Examples: |
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| 452 | #D- |
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| 453 | function IGCM_sys_TestFileArchive { |
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[544] | 454 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 455 | typeset ExistFlag |
---|
| 456 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 457 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[257] | 458 | |
---|
[544] | 459 | return ${ExistFlag} |
---|
[257] | 460 | } |
---|
| 461 | |
---|
| 462 | #D-#================================================== |
---|
[544] | 463 | #D-function IGCM_sys_TestFileBuffer |
---|
| 464 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 465 | #D-* Examples: |
---|
| 466 | #D- |
---|
| 467 | function IGCM_sys_TestFileBuffer { |
---|
| 468 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 469 | typeset ExistFlag |
---|
| 470 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 471 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 472 | |
---|
| 473 | return ${ExistFlag} |
---|
| 474 | } |
---|
| 475 | |
---|
| 476 | #D-#================================================== |
---|
[257] | 477 | #D-function IGCM_sys_CountFileArchive |
---|
| 478 | #D-* Purpose: Count files on Archive filesystem |
---|
| 479 | #D-* Examples: |
---|
| 480 | #D- |
---|
| 481 | function IGCM_sys_CountFileArchive { |
---|
[544] | 482 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 483 | ls ${@} 2>/dev/null | wc -l |
---|
| 484 | if [ $? -gt 0 ] ; then |
---|
| 485 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 486 | fi |
---|
| 487 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[257] | 488 | } |
---|
| 489 | |
---|
| 490 | #D-#================================================== |
---|
[544] | 491 | #D-function IGCM_sys_CountFileBuffer |
---|
| 492 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 493 | #D-* Examples: |
---|
| 494 | #D- |
---|
| 495 | function IGCM_sys_CountFileBuffer { |
---|
| 496 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 497 | ls ${@} 2>/dev/null | wc -l |
---|
| 498 | if [ $? -gt 0 ] ; then |
---|
| 499 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 500 | fi |
---|
| 501 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 502 | } |
---|
| 503 | |
---|
| 504 | #D-#================================================== |
---|
[257] | 505 | #D-function IGCM_sys_Tree |
---|
| 506 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 507 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 508 | #D- |
---|
| 509 | function IGCM_sys_Tree { |
---|
[544] | 510 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 511 | if ( $DEBUG_sys ) ; then |
---|
| 512 | echo "IGCM_sys_Tree :" $@ |
---|
| 513 | fi |
---|
[257] | 514 | |
---|
[544] | 515 | \tree -f $@ |
---|
[257] | 516 | |
---|
[544] | 517 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[257] | 518 | } |
---|
| 519 | |
---|
| 520 | #D-#================================================== |
---|
| 521 | #D-function IGCM_sys_Tar |
---|
[544] | 522 | #D-* Purpose: master tar command |
---|
[257] | 523 | #D-* Examples: |
---|
| 524 | #D- |
---|
| 525 | function IGCM_sys_Tar { |
---|
[544] | 526 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 527 | if ( $DEBUG_sys ) ; then |
---|
| 528 | echo "IGCM_sys_Tar :" $@ |
---|
| 529 | fi |
---|
| 530 | \tar cf $@ |
---|
| 531 | if [ $? -gt 0 ] ; then |
---|
| 532 | echo "IGCM_sys_Tar : erreur." |
---|
| 533 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 534 | fi |
---|
| 535 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[257] | 536 | } |
---|
| 537 | |
---|
| 538 | #D-#================================================== |
---|
| 539 | #D-function IGCM_sys_UnTar |
---|
| 540 | #D-* Purpose: master un-tar command |
---|
| 541 | #D-* Examples: |
---|
| 542 | #D- |
---|
| 543 | function IGCM_sys_UnTar { |
---|
[544] | 544 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 545 | if ( $DEBUG_sys ) ; then |
---|
| 546 | echo "IGCM_sys_UnTar :" $@ |
---|
| 547 | fi |
---|
| 548 | \tar xvf $1 |
---|
| 549 | if [ $? -gt 0 ] ; then |
---|
| 550 | echo "IGCM_sys_UnTar : erreur." |
---|
| 551 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 552 | fi |
---|
| 553 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[257] | 554 | } |
---|
| 555 | |
---|
| 556 | #D-#================================================== |
---|
| 557 | #D-function IGCM_sys_QsubPost |
---|
| 558 | #D-* Purpose: Qsub new job on scalaire |
---|
| 559 | #D-* Examples: |
---|
| 560 | #D- |
---|
| 561 | function IGCM_sys_QsubPost { |
---|
[544] | 562 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 563 | if ( $DEBUG_sys ) ; then |
---|
| 564 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 565 | fi |
---|
[586] | 566 | /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} |
---|
[544] | 567 | if [ $? -gt 0 ] ; then |
---|
| 568 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 569 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 570 | fi |
---|
| 571 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[257] | 572 | } |
---|
| 573 | |
---|
| 574 | #D-************************* |
---|
[676] | 575 | #D- File transfer functions |
---|
[257] | 576 | #D-************************* |
---|
| 577 | #D- |
---|
| 578 | |
---|
| 579 | #D-#================================================== |
---|
| 580 | #D-function IGCM_sys_Rsync_out |
---|
| 581 | #D-* Purpose: treat return val of rsync |
---|
| 582 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 583 | #D- Error values and explanations can depend on your system version. |
---|
| 584 | function IGCM_sys_Rsync_out { |
---|
[719] | 585 | status=$1 |
---|
| 586 | if [ ! $status ] ; then |
---|
[544] | 587 | echo "rsync error !" |
---|
| 588 | fi |
---|
[257] | 589 | |
---|
[544] | 590 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 591 | case $status in |
---|
[544] | 592 | 0) return ;; |
---|
| 593 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 594 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 595 | return;; |
---|
| 596 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 597 | echo "Incompatibilité de protocole." |
---|
| 598 | return;; |
---|
| 599 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 600 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 601 | echo "répertoires" |
---|
| 602 | return;; |
---|
| 603 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 604 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 605 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 606 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 607 | echo "pas par le serveur a été spécifiée." |
---|
| 608 | return;; |
---|
| 609 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 610 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 611 | return;; |
---|
| 612 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 613 | echo "Erreur d'entrée sortie fichier" |
---|
| 614 | return;; |
---|
| 615 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 616 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 617 | return;; |
---|
| 618 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 619 | echo "Erreur avec les diagnostics du programme" |
---|
| 620 | return;; |
---|
| 621 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 622 | echo "Erreur dans le code IPC" |
---|
| 623 | return;; |
---|
| 624 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 625 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 626 | return;; |
---|
| 627 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 628 | echo "Une erreur retournée par waitpid()" |
---|
| 629 | return;; |
---|
| 630 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 631 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 632 | return;; |
---|
| 633 | 23) echo "" |
---|
| 634 | echo "Erreur fichier inexistant" |
---|
| 635 | return;; |
---|
| 636 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 637 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 638 | return;; |
---|
[719] | 639 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[544] | 640 | return;; |
---|
| 641 | esac |
---|
| 642 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 643 | case $status in |
---|
[676] | 644 | 0) return;; |
---|
[544] | 645 | 1) echo "rsync error : Syntax or usage error " |
---|
| 646 | return;; |
---|
| 647 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 648 | return;; |
---|
| 649 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 650 | return;; |
---|
| 651 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 652 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 653 | echo "them; or an option was specified that is supported by the client and" |
---|
| 654 | echo "not by the server." |
---|
| 655 | return;; |
---|
| 656 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 657 | return;; |
---|
| 658 | 10) echo "rsync error : Error in socket I/O " |
---|
| 659 | return;; |
---|
| 660 | 11) echo "rsync error : Error in file I/O " |
---|
| 661 | return;; |
---|
| 662 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 663 | return;; |
---|
| 664 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 665 | return;; |
---|
| 666 | 14) echo "rsync error : Error in IPC code " |
---|
| 667 | return;; |
---|
| 668 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 669 | return;; |
---|
| 670 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 671 | return;; |
---|
| 672 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 673 | return;; |
---|
| 674 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 675 | return;; |
---|
| 676 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 677 | return;; |
---|
| 678 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 679 | return;; |
---|
[719] | 680 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[544] | 681 | return;; |
---|
| 682 | esac |
---|
| 683 | else |
---|
| 684 | echo "unknown language $MYLANG." |
---|
| 685 | return |
---|
| 686 | fi |
---|
[257] | 687 | } |
---|
[544] | 688 | |
---|
[257] | 689 | #D-#================================================== |
---|
| 690 | #D-function IGCM_sys_Cp |
---|
| 691 | #D-* Purpose: generic cp |
---|
| 692 | #D-* Examples: |
---|
| 693 | #D- |
---|
| 694 | function IGCM_sys_Cp { |
---|
[544] | 695 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 696 | if ( $DEBUG_sys ) ; then |
---|
| 697 | echo "IGCM_sys_Cp :" $@ |
---|
| 698 | fi |
---|
[257] | 699 | |
---|
[717] | 700 | typeset status |
---|
[257] | 701 | |
---|
[544] | 702 | echo cp $@ > out_rsync 2>&1 |
---|
| 703 | \cp $@ >> out_rsync 2>&1 |
---|
[717] | 704 | status=$? |
---|
[257] | 705 | |
---|
[717] | 706 | if [ ${status} -gt 0 ] ; then |
---|
| 707 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[544] | 708 | cat out_rsync |
---|
| 709 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 710 | else |
---|
| 711 | \rm out_rsync |
---|
| 712 | fi |
---|
| 713 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[257] | 714 | } |
---|
| 715 | |
---|
| 716 | #D-#================================================== |
---|
| 717 | #D-function IGCM_sys_Rm |
---|
| 718 | #D-* Purpose: generic rm |
---|
| 719 | #D-* Examples: |
---|
| 720 | #D- |
---|
| 721 | function IGCM_sys_Rm { |
---|
[544] | 722 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 723 | if ( $DEBUG_sys ) ; then |
---|
| 724 | echo "IGCM_sys_Rm :" $@ |
---|
| 725 | fi |
---|
[257] | 726 | |
---|
[717] | 727 | typeset status |
---|
[257] | 728 | |
---|
[544] | 729 | echo rm $@ > out_rsync 2>&1 |
---|
| 730 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 731 | status=$? |
---|
[257] | 732 | |
---|
[717] | 733 | if [ ${status} -gt 0 ] ; then |
---|
| 734 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[544] | 735 | cat out_rsync |
---|
| 736 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 737 | else |
---|
| 738 | \rm out_rsync |
---|
| 739 | fi |
---|
| 740 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[257] | 741 | } |
---|
| 742 | |
---|
| 743 | #D-#================================================== |
---|
| 744 | #D-function IGCM_sys_RmRunDir |
---|
| 745 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 746 | #D- scheduler will do the job) |
---|
[616] | 747 | #D- Dummy function on mercure front-end |
---|
[257] | 748 | #D-* Examples: |
---|
| 749 | #D- |
---|
| 750 | function IGCM_sys_RmRunDir { |
---|
[616] | 751 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 752 | if ( $DEBUG_sys ) ; then |
---|
| 753 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 754 | echo "Dummy call, let the scheduler do that." |
---|
| 755 | fi |
---|
| 756 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[257] | 757 | } |
---|
| 758 | |
---|
| 759 | #D-#================================================== |
---|
| 760 | #D-function IGCM_sys_Mv |
---|
| 761 | #D-* Purpose: generic move |
---|
| 762 | #D-* Examples: |
---|
| 763 | #D- |
---|
| 764 | function IGCM_sys_Mv { |
---|
[544] | 765 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 766 | if ( $DEBUG_sys ) ; then |
---|
| 767 | echo "IGCM_sys_Mv :" $@ |
---|
| 768 | fi |
---|
[257] | 769 | |
---|
[544] | 770 | if [ $DRYRUN = 0 ]; then |
---|
[257] | 771 | |
---|
[717] | 772 | typeset status |
---|
[676] | 773 | |
---|
[544] | 774 | echo mv $@ > out_rsync 2>&1 |
---|
| 775 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 776 | status=$? |
---|
[676] | 777 | |
---|
[717] | 778 | if [ ${status} -gt 0 ] ; then |
---|
| 779 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[544] | 780 | cat out_rsync |
---|
| 781 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[257] | 782 | else |
---|
[544] | 783 | \rm out_rsync |
---|
[257] | 784 | fi |
---|
[544] | 785 | else |
---|
| 786 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 787 | fi |
---|
[257] | 788 | |
---|
[544] | 789 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[257] | 790 | } |
---|
| 791 | |
---|
| 792 | #D-#================================================== |
---|
| 793 | #D-function IGCM_sys_Put_Dir |
---|
| 794 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 795 | #D-* Examples: |
---|
| 796 | #D- |
---|
| 797 | function IGCM_sys_Put_Dir { |
---|
[544] | 798 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 799 | if ( $DEBUG_sys ) ; then |
---|
| 800 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 801 | fi |
---|
| 802 | if [ $DRYRUN = 0 ]; then |
---|
| 803 | if [ ! -d ${1} ] ; then |
---|
| 804 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 805 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 806 | return |
---|
[257] | 807 | fi |
---|
| 808 | |
---|
[717] | 809 | typeset status |
---|
[257] | 810 | |
---|
[544] | 811 | # Only if we use rsync |
---|
| 812 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 813 | # |
---|
| 814 | #USUAL WAY |
---|
| 815 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
[717] | 816 | status=$? |
---|
[257] | 817 | |
---|
[717] | 818 | if [ ${status} -gt 0 ] ; then |
---|
| 819 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[544] | 820 | cat out_rsync |
---|
| 821 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[257] | 822 | else |
---|
[544] | 823 | \rm out_rsync |
---|
[257] | 824 | fi |
---|
[544] | 825 | else |
---|
| 826 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 827 | fi |
---|
| 828 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[257] | 829 | } |
---|
| 830 | |
---|
| 831 | #D-#================================================== |
---|
| 832 | #D-function IGCM_sys_Get_Dir |
---|
[676] | 833 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[257] | 834 | #D-* Examples: |
---|
| 835 | #D- |
---|
| 836 | function IGCM_sys_Get_Dir { |
---|
[544] | 837 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 838 | if ( $DEBUG_sys ) ; then |
---|
| 839 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 840 | fi |
---|
| 841 | if [ $DRYRUN = 0 ]; then |
---|
[676] | 842 | # if [ ! -d ${1} ] ; then |
---|
| 843 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 844 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 845 | # return |
---|
| 846 | # fi |
---|
[257] | 847 | |
---|
[717] | 848 | typeset NB_ESSAI DELAI status i |
---|
| 849 | # number of tentative |
---|
| 850 | NB_ESSAI=3 |
---|
| 851 | # time delay between tentative |
---|
| 852 | DELAI=2 |
---|
[257] | 853 | |
---|
[544] | 854 | # Only if we use rsync |
---|
| 855 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 856 | # |
---|
[717] | 857 | # USUAL WAY |
---|
| 858 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
[713] | 859 | ccc_hsm get -r $1 |
---|
[257] | 860 | |
---|
[717] | 861 | i=0 |
---|
| 862 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 863 | \cp -ur $1 $2 >> out_rsync 2>&1 |
---|
| 864 | status=$? |
---|
| 865 | if [ ${status} -gt 0 ]; then |
---|
| 866 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 867 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 868 | sleep $DELAI |
---|
| 869 | else |
---|
| 870 | break |
---|
| 871 | fi |
---|
| 872 | (( i = i + 1 )) |
---|
| 873 | done |
---|
| 874 | |
---|
| 875 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 876 | echo "IGCM_sys_Get_Dir : error." |
---|
| 877 | cat out_rsync |
---|
| 878 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[257] | 879 | else |
---|
[544] | 880 | \rm out_rsync |
---|
[257] | 881 | fi |
---|
[544] | 882 | else |
---|
| 883 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 884 | fi |
---|
| 885 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[257] | 886 | } |
---|
| 887 | |
---|
| 888 | #D-#================================================== |
---|
| 889 | #D-function IGCM_sys_Get_Master |
---|
| 890 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 891 | #D-* Examples: |
---|
| 892 | #D- |
---|
| 893 | function IGCM_sys_Get_Master { |
---|
[544] | 894 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 895 | if ( $DEBUG_sys ) ; then |
---|
| 896 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 897 | fi |
---|
| 898 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 899 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[544] | 900 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 901 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 902 | return |
---|
[257] | 903 | fi |
---|
| 904 | |
---|
[717] | 905 | typeset NB_ESSAI DELAI status i |
---|
| 906 | # number of tentative |
---|
| 907 | NB_ESSAI=3 |
---|
| 908 | # time delay between tentative |
---|
| 909 | DELAI=2 |
---|
[257] | 910 | |
---|
[717] | 911 | i=0 |
---|
| 912 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 913 | \cp -urL $1 $2 > out_rsync 2>&1 |
---|
| 914 | status=$? |
---|
| 915 | if [ ${status} -gt 0 ]; then |
---|
| 916 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 917 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 918 | sleep $DELAI |
---|
| 919 | else |
---|
| 920 | break |
---|
| 921 | fi |
---|
| 922 | (( i = i + 1 )) |
---|
| 923 | done |
---|
[257] | 924 | |
---|
[717] | 925 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 926 | echo "IGCM_sys_Get_Master : error." |
---|
| 927 | cat out_rsync |
---|
| 928 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[257] | 929 | else |
---|
[544] | 930 | \rm out_rsync |
---|
[257] | 931 | fi |
---|
[544] | 932 | else |
---|
| 933 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 934 | fi |
---|
| 935 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[257] | 936 | } |
---|
| 937 | |
---|
| 938 | #D-#================================================== |
---|
[442] | 939 | #D-function IGCM_sys_Put_Rest |
---|
[544] | 940 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[442] | 941 | #D- File and target directory must exist. |
---|
| 942 | #D-* Examples: |
---|
| 943 | #D- |
---|
| 944 | function IGCM_sys_Put_Rest { |
---|
[544] | 945 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 946 | if ( $DEBUG_sys ) ; then |
---|
| 947 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 948 | fi |
---|
| 949 | if [ $DRYRUN = 0 ]; then |
---|
| 950 | if [ ! -f ${1} ] ; then |
---|
| 951 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 952 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[442] | 953 | fi |
---|
| 954 | |
---|
[717] | 955 | typeset status |
---|
[544] | 956 | # |
---|
| 957 | if [ X${JobType} = XRUN ] ; then |
---|
| 958 | IGCM_sys_Chmod 444 ${1} |
---|
| 959 | fi |
---|
[442] | 960 | |
---|
[544] | 961 | # |
---|
| 962 | # USUAL WAY |
---|
| 963 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 964 | status=$? |
---|
[544] | 965 | |
---|
[676] | 966 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 967 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 968 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[442] | 969 | |
---|
[676] | 970 | # #RSYNC WITH NFS USE |
---|
| 971 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 972 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[442] | 973 | |
---|
[717] | 974 | # status=$? |
---|
| 975 | # IGCM_sys_Rsync_out $status |
---|
[442] | 976 | |
---|
[676] | 977 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[717] | 978 | # (( status=status+$? )) |
---|
[442] | 979 | |
---|
[717] | 980 | if [ ${status} -gt 0 ] ; then |
---|
| 981 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[544] | 982 | cat out_rsync |
---|
| 983 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[442] | 984 | else |
---|
[544] | 985 | \rm out_rsync |
---|
[442] | 986 | fi |
---|
[544] | 987 | else |
---|
| 988 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 989 | fi |
---|
| 990 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[442] | 991 | } |
---|
| 992 | |
---|
| 993 | #D-#================================================== |
---|
[544] | 994 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 995 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 996 | #D- File and target directory must exist. |
---|
| 997 | #D-* Examples: |
---|
| 998 | #D- |
---|
| 999 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1000 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1001 | if ( $DEBUG_sys ) ; then |
---|
| 1002 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1003 | fi |
---|
| 1004 | if [ $DRYRUN = 0 ]; then |
---|
| 1005 | if [ ! -f ${1} ] ; then |
---|
| 1006 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1007 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1008 | fi |
---|
| 1009 | |
---|
[717] | 1010 | typeset status |
---|
[544] | 1011 | # |
---|
| 1012 | if [ X${JobType} = XRUN ] ; then |
---|
| 1013 | IGCM_sys_Chmod 444 ${1} |
---|
| 1014 | fi |
---|
| 1015 | |
---|
| 1016 | # |
---|
| 1017 | # USUAL WAY |
---|
| 1018 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1019 | status=$? |
---|
[544] | 1020 | |
---|
[717] | 1021 | if [ ${status} -gt 0 ] ; then |
---|
| 1022 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[544] | 1023 | cat out_rsync |
---|
| 1024 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1025 | else |
---|
| 1026 | \rm out_rsync |
---|
| 1027 | fi |
---|
| 1028 | else |
---|
| 1029 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1030 | fi |
---|
| 1031 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1032 | } |
---|
| 1033 | |
---|
| 1034 | #D-#================================================== |
---|
[257] | 1035 | #D-function IGCM_sys_Put_Out |
---|
[544] | 1036 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[257] | 1037 | #D-* Examples: |
---|
| 1038 | #D- |
---|
| 1039 | function IGCM_sys_Put_Out { |
---|
[544] | 1040 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1041 | if ( $DEBUG_sys ) ; then |
---|
| 1042 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1043 | fi |
---|
[676] | 1044 | |
---|
[710] | 1045 | typeset NB_ESSAI DELAI status i exist skip |
---|
[676] | 1046 | |
---|
| 1047 | # number of tentative |
---|
| 1048 | NB_ESSAI=3 |
---|
| 1049 | # time delay between tentative |
---|
| 1050 | DELAI=2 |
---|
| 1051 | |
---|
[544] | 1052 | if [ $DRYRUN = 0 ]; then |
---|
| 1053 | if [ ! -f ${1} ] ; then |
---|
| 1054 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1055 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1056 | return 1 |
---|
[257] | 1057 | fi |
---|
[544] | 1058 | # |
---|
| 1059 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1060 | # |
---|
[520] | 1061 | |
---|
[544] | 1062 | #===================================================== |
---|
| 1063 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1064 | #===================================================== |
---|
[520] | 1065 | |
---|
[544] | 1066 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1067 | #if [ $? -eq 0 ] ; then |
---|
| 1068 | # typeset WORKPATH FILEPATH |
---|
| 1069 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
[676] | 1070 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
[544] | 1071 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1072 | # # |
---|
| 1073 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1074 | #fi |
---|
[520] | 1075 | |
---|
[544] | 1076 | if [ X${JobType} = XRUN ] ; then |
---|
| 1077 | if [ X${3} = X ] ; then |
---|
[676] | 1078 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1079 | fi |
---|
| 1080 | fi |
---|
[676] | 1081 | # |
---|
[257] | 1082 | |
---|
[544] | 1083 | exist=false |
---|
| 1084 | skip=false |
---|
| 1085 | if [ -f $2 ] ; then |
---|
| 1086 | IGCM_debug_Print 1 "$2 already exist" |
---|
[587] | 1087 | #dmget $2 |
---|
| 1088 | ccc_hsm get $2 |
---|
[544] | 1089 | exist=true |
---|
| 1090 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
[676] | 1091 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1092 | skip=true |
---|
[544] | 1093 | else |
---|
[676] | 1094 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1095 | skip=false |
---|
[544] | 1096 | fi |
---|
| 1097 | fi |
---|
[676] | 1098 | # |
---|
[544] | 1099 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1100 | IGCM_sys_Chmod u+w $2 |
---|
| 1101 | fi |
---|
[676] | 1102 | |
---|
[544] | 1103 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1104 | i=0 |
---|
[676] | 1105 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1106 | # USUAL WAY |
---|
| 1107 | \cp $1 $2 > out_rsync 2>&1 |
---|
[710] | 1108 | status=$? |
---|
| 1109 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1110 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1111 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
| 1112 | sleep $DELAI |
---|
| 1113 | else |
---|
| 1114 | break |
---|
| 1115 | fi |
---|
| 1116 | (( i = i + 1 )) |
---|
| 1117 | done |
---|
[544] | 1118 | fi |
---|
[358] | 1119 | |
---|
[676] | 1120 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1121 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1122 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[257] | 1123 | |
---|
[676] | 1124 | # #RSYNC WITH NFS USE |
---|
| 1125 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1126 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[257] | 1127 | |
---|
[710] | 1128 | # status=$? |
---|
| 1129 | # IGCM_sys_Rsync_out $status |
---|
[257] | 1130 | |
---|
[676] | 1131 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[710] | 1132 | # (( status=status+$? )) |
---|
[257] | 1133 | |
---|
[710] | 1134 | if [ ${status} -gt 0 ] ; then |
---|
[676] | 1135 | echo "IGCM_sys_Put_Out : error." |
---|
| 1136 | cat out_rsync |
---|
| 1137 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 1138 | else |
---|
| 1139 | \rm out_rsync |
---|
| 1140 | fi |
---|
[544] | 1141 | else |
---|
| 1142 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1143 | fi |
---|
| 1144 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1145 | return 0 |
---|
| 1146 | } |
---|
| 1147 | |
---|
| 1148 | #D-#================================================== |
---|
| 1149 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1150 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1151 | #D-* Examples: |
---|
| 1152 | #D- |
---|
| 1153 | function IGCM_sys_PutBuffer_Out { |
---|
| 1154 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1155 | if ( $DEBUG_sys ) ; then |
---|
| 1156 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1157 | fi |
---|
[710] | 1158 | |
---|
| 1159 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1160 | |
---|
| 1161 | # number of tentative |
---|
| 1162 | NB_ESSAI=3 |
---|
| 1163 | # time delay between tentative |
---|
| 1164 | DELAI=2 |
---|
| 1165 | |
---|
[544] | 1166 | if [ $DRYRUN = 0 ]; then |
---|
| 1167 | if [ ! -f ${1} ] ; then |
---|
| 1168 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1169 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1170 | return 1 |
---|
| 1171 | fi |
---|
| 1172 | # |
---|
| 1173 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1174 | # |
---|
| 1175 | |
---|
| 1176 | if [ X${JobType} = XRUN ] ; then |
---|
| 1177 | if [ X${3} = X ] ; then |
---|
[676] | 1178 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1179 | fi |
---|
| 1180 | fi |
---|
[710] | 1181 | |
---|
| 1182 | exist=false |
---|
| 1183 | skip=false |
---|
| 1184 | if [ -f $2 ] ; then |
---|
| 1185 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1186 | exist=true |
---|
| 1187 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1188 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1189 | skip=true |
---|
| 1190 | else |
---|
| 1191 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1192 | skip=false |
---|
| 1193 | fi |
---|
| 1194 | fi |
---|
[544] | 1195 | # |
---|
[710] | 1196 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1197 | IGCM_sys_Chmod u+w $2 |
---|
| 1198 | fi |
---|
[705] | 1199 | |
---|
[710] | 1200 | if [ X${skip} = Xfalse ] ; then |
---|
| 1201 | i=0 |
---|
| 1202 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1203 | # USUAL WAY |
---|
| 1204 | #\cp $1 $2 > out_rsync 2>&1 |
---|
| 1205 | \mv $1 $2 > out_rsync 2>&1 |
---|
| 1206 | status=$? |
---|
| 1207 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1208 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[710] | 1209 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 1210 | sleep $DELAI |
---|
| 1211 | else |
---|
| 1212 | break |
---|
| 1213 | fi |
---|
| 1214 | (( i = i + 1 )) |
---|
| 1215 | done |
---|
| 1216 | fi |
---|
[544] | 1217 | |
---|
[710] | 1218 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1219 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1220 | cat out_rsync |
---|
| 1221 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
[257] | 1222 | else |
---|
[544] | 1223 | \rm out_rsync |
---|
[257] | 1224 | fi |
---|
[544] | 1225 | else |
---|
| 1226 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1227 | fi |
---|
| 1228 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1229 | return 0 |
---|
[257] | 1230 | } |
---|
| 1231 | |
---|
| 1232 | #D-#================================================== |
---|
| 1233 | #D-function IGCM_sys_Get |
---|
| 1234 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1235 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1236 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1237 | function IGCM_sys_Get { |
---|
[544] | 1238 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[257] | 1239 | |
---|
[719] | 1240 | typeset DEST dm_liste ifile target file_work |
---|
[676] | 1241 | typeset NB_ESSAI DELAI status i |
---|
[257] | 1242 | |
---|
[544] | 1243 | if ( $DEBUG_sys ) ; then |
---|
| 1244 | echo "IGCM_sys_Get :" $@ |
---|
| 1245 | fi |
---|
[676] | 1246 | |
---|
| 1247 | # number of tentative |
---|
| 1248 | NB_ESSAI=3 |
---|
| 1249 | # time delay between tentative |
---|
| 1250 | DELAI=2 |
---|
| 1251 | |
---|
[544] | 1252 | if [ $DRYRUN -le 2 ]; then |
---|
| 1253 | if [ X${1} = X'/l' ] ; then |
---|
| 1254 | # test if the first file is present in the old computation : |
---|
| 1255 | eval set +A dm_liste \${${2}} |
---|
| 1256 | else |
---|
| 1257 | eval set +A dm_liste ${1} |
---|
[257] | 1258 | fi |
---|
[544] | 1259 | eval DEST=\${${#}} |
---|
[257] | 1260 | |
---|
[544] | 1261 | #===================================================== |
---|
| 1262 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1263 | #===================================================== |
---|
[257] | 1264 | |
---|
[544] | 1265 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1266 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1267 | #if [ $? -eq 0 ] ; then |
---|
| 1268 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1269 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1270 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1271 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1272 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1273 | # return |
---|
| 1274 | # fi |
---|
| 1275 | #fi |
---|
[257] | 1276 | |
---|
[587] | 1277 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1278 | status=$? |
---|
| 1279 | if [ ${status} -gt 0 ] ; then |
---|
| 1280 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[544] | 1281 | cat out_rsync |
---|
| 1282 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1283 | fi |
---|
[257] | 1284 | |
---|
[717] | 1285 | #if [ ${status} -gt 0 ] ; then |
---|
[544] | 1286 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1287 | # cat out_rsync |
---|
| 1288 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1289 | # sleep 30 |
---|
| 1290 | # echo "We try another time" |
---|
[587] | 1291 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1292 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1293 | # status=$? |
---|
| 1294 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1295 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1296 | # cat out_rsync |
---|
| 1297 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[544] | 1298 | # fi |
---|
| 1299 | # else |
---|
| 1300 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1301 | # cat out_rsync |
---|
| 1302 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1303 | # fi |
---|
| 1304 | #fi |
---|
[520] | 1305 | |
---|
[719] | 1306 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1307 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1308 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1309 | |
---|
| 1310 | # #RSYNC WITH NFS USE |
---|
| 1311 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1312 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1313 | |
---|
| 1314 | # status=$? |
---|
| 1315 | # IGCM_sys_Rsync_out $status |
---|
| 1316 | |
---|
| 1317 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1318 | # (( status=status+$? )) |
---|
| 1319 | |
---|
[544] | 1320 | #USUAL WAY |
---|
| 1321 | if [ X${1} = X'/l' ] ; then |
---|
| 1322 | for target in ${dm_liste[*]} ; do |
---|
[676] | 1323 | local_file=$( basename ${target} ) |
---|
| 1324 | # test if the target file is present before the loop |
---|
| 1325 | IGCM_sys_TestFileArchive ${target} |
---|
[717] | 1326 | status=$? |
---|
| 1327 | if [ ${status} -gt 0 ] ; then |
---|
[705] | 1328 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[676] | 1329 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1330 | else |
---|
[719] | 1331 | i=0 |
---|
[676] | 1332 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1333 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1334 | status=$? |
---|
| 1335 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1336 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1337 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1338 | sleep $DELAI |
---|
| 1339 | else |
---|
| 1340 | break |
---|
| 1341 | fi |
---|
| 1342 | (( i = i + 1 )) |
---|
| 1343 | done |
---|
[719] | 1344 | if [ ${status} -gt 0 ] ; then |
---|
| 1345 | echo "IGCM_sys_Get : error" |
---|
| 1346 | cat out_rsync |
---|
| 1347 | \rm out_rsync |
---|
| 1348 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1349 | else |
---|
| 1350 | \rm out_rsync |
---|
| 1351 | fi |
---|
[676] | 1352 | fi |
---|
[544] | 1353 | done |
---|
| 1354 | else |
---|
[719] | 1355 | i=0 |
---|
| 1356 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1357 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1358 | status=$? |
---|
| 1359 | if [ ${status} -gt 0 ]; then |
---|
| 1360 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1361 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1362 | sleep $DELAI |
---|
| 1363 | else |
---|
| 1364 | break |
---|
| 1365 | fi |
---|
| 1366 | (( i = i + 1 )) |
---|
| 1367 | done |
---|
| 1368 | if [ ${status} -gt 0 ] ; then |
---|
| 1369 | echo "IGCM_sys_Get : error" |
---|
| 1370 | cat out_rsync |
---|
| 1371 | \rm out_rsync |
---|
| 1372 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1373 | else |
---|
| 1374 | \rm out_rsync |
---|
| 1375 | fi |
---|
[544] | 1376 | fi |
---|
| 1377 | else |
---|
| 1378 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1379 | fi |
---|
| 1380 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[257] | 1381 | } |
---|
| 1382 | |
---|
| 1383 | #D-#================================================== |
---|
[544] | 1384 | #D-function IGCM_sys_GetBuffer |
---|
| 1385 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1386 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1387 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1388 | function IGCM_sys_GetBuffer { |
---|
| 1389 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1390 | |
---|
[719] | 1391 | typeset DEST buf_liste ifile target file_work |
---|
| 1392 | typeset NB_ESSAI DELAI status i |
---|
[544] | 1393 | |
---|
| 1394 | if ( $DEBUG_sys ) ; then |
---|
| 1395 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1396 | fi |
---|
[719] | 1397 | |
---|
| 1398 | # number of tentative |
---|
| 1399 | NB_ESSAI=3 |
---|
| 1400 | # time delay between tentative |
---|
| 1401 | DELAI=2 |
---|
| 1402 | |
---|
[544] | 1403 | if [ $DRYRUN -le 2 ]; then |
---|
| 1404 | if [ X${1} = X'/l' ] ; then |
---|
| 1405 | # test if the first file is present in the old computation : |
---|
| 1406 | eval set +A buf_liste \${${2}} |
---|
| 1407 | else |
---|
| 1408 | eval set +A buf_liste ${1} |
---|
| 1409 | fi |
---|
| 1410 | eval DEST=\${${#}} |
---|
| 1411 | |
---|
| 1412 | #USUAL WAY |
---|
| 1413 | if [ X${1} = X'/l' ] ; then |
---|
| 1414 | for target in ${buf_liste[*]} ; do |
---|
[676] | 1415 | local_file=$( basename ${target} ) |
---|
[719] | 1416 | i=0 |
---|
| 1417 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1418 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1419 | status=$? |
---|
| 1420 | if [ ${status} -gt 0 ]; then |
---|
| 1421 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1422 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1423 | sleep $DELAI |
---|
| 1424 | else |
---|
| 1425 | break |
---|
| 1426 | fi |
---|
| 1427 | (( i = i + 1 )) |
---|
| 1428 | done |
---|
| 1429 | if [ ${status} -gt 0 ] ; then |
---|
| 1430 | echo "IGCM_sys_Get : error" |
---|
| 1431 | cat out_rsync |
---|
| 1432 | \rm out_rsync |
---|
| 1433 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1434 | else |
---|
| 1435 | \rm out_rsync |
---|
| 1436 | fi |
---|
[544] | 1437 | done |
---|
| 1438 | else |
---|
[719] | 1439 | i=0 |
---|
| 1440 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1441 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1442 | status=$? |
---|
| 1443 | if [ ${status} -gt 0 ]; then |
---|
| 1444 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1445 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1446 | sleep $DELAI |
---|
| 1447 | else |
---|
| 1448 | break |
---|
| 1449 | fi |
---|
| 1450 | (( i = i + 1 )) |
---|
| 1451 | done |
---|
| 1452 | if [ ${status} -gt 0 ] ; then |
---|
| 1453 | echo "IGCM_sys_Get : error" |
---|
| 1454 | cat out_rsync |
---|
| 1455 | \rm out_rsync |
---|
| 1456 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1457 | else |
---|
| 1458 | \rm out_rsync |
---|
| 1459 | fi |
---|
[544] | 1460 | fi |
---|
| 1461 | else |
---|
| 1462 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1463 | fi |
---|
| 1464 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1465 | } |
---|
| 1466 | |
---|
| 1467 | #D-#================================================== |
---|
| 1468 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1469 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1470 | #D-* Examples: |
---|
| 1471 | #D- |
---|
| 1472 | function IGCM_sys_GetDate_FichWork { |
---|
| 1473 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1474 | if ( $DEBUG_sys ) ; then |
---|
| 1475 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1476 | fi |
---|
| 1477 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1478 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1479 | } |
---|
| 1480 | |
---|
| 1481 | #D-#================================================== |
---|
| 1482 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[676] | 1483 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[544] | 1484 | #D-* Examples: |
---|
| 1485 | #D- |
---|
| 1486 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1487 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1488 | if ( $DEBUG_sys ) ; then |
---|
| 1489 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1490 | fi |
---|
| 1491 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1492 | } |
---|
| 1493 | |
---|
| 1494 | #D-#================================================== |
---|
[343] | 1495 | #D-function IGCM_sys_Dods_Rm |
---|
[676] | 1496 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
[343] | 1497 | #D-* Examples: |
---|
| 1498 | #D- |
---|
| 1499 | function IGCM_sys_Dods_Rm { |
---|
[544] | 1500 | if ( $DEBUG_sys ) ; then |
---|
| 1501 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1502 | fi |
---|
[717] | 1503 | typeset status |
---|
[544] | 1504 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1505 | |
---|
| 1506 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1507 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1508 | # echo "Nothing has been done." |
---|
| 1509 | # return |
---|
| 1510 | # fi |
---|
| 1511 | |
---|
[649] | 1512 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[717] | 1513 | status=$? |
---|
[676] | 1514 | |
---|
[717] | 1515 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1516 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1517 | # cat out_dods_rm |
---|
| 1518 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
[418] | 1519 | # else |
---|
[676] | 1520 | # rm out_dods_rm |
---|
[418] | 1521 | # fi |
---|
| 1522 | |
---|
[544] | 1523 | else |
---|
| 1524 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1525 | fi |
---|
[717] | 1526 | return $status |
---|
[343] | 1527 | } |
---|
| 1528 | |
---|
| 1529 | #D-#================================================== |
---|
| 1530 | #D-function IGCM_sys_Dods_Cp |
---|
| 1531 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1532 | #D-* Examples: |
---|
| 1533 | #D- |
---|
| 1534 | function IGCM_sys_Dods_Cp { |
---|
[544] | 1535 | if ( $DEBUG_sys ) ; then |
---|
| 1536 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1537 | fi |
---|
[717] | 1538 | typeset status |
---|
[544] | 1539 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1540 | |
---|
| 1541 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1542 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1543 | # echo "Nothing has been done." |
---|
| 1544 | # return |
---|
| 1545 | # fi |
---|
| 1546 | |
---|
[649] | 1547 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[717] | 1548 | status=$? |
---|
[544] | 1549 | |
---|
[717] | 1550 | # if [ ${status} -gt 0 ] ; then |
---|
[676] | 1551 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1552 | # cat out_dods_cp |
---|
| 1553 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1554 | # else |
---|
| 1555 | # rm out_dods_cp |
---|
| 1556 | # fi |
---|
[418] | 1557 | |
---|
[544] | 1558 | else |
---|
| 1559 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1560 | fi |
---|
[717] | 1561 | return $status |
---|
[343] | 1562 | } |
---|
| 1563 | |
---|
| 1564 | #D-#================================================== |
---|
[257] | 1565 | #D-function IGCM_sys_Put_Dods |
---|
| 1566 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1567 | #D-* Examples: |
---|
| 1568 | #D- |
---|
| 1569 | function IGCM_sys_Put_Dods { |
---|
[544] | 1570 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1571 | if ( $DEBUG_sys ) ; then |
---|
| 1572 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1573 | fi |
---|
[717] | 1574 | #set -vx |
---|
| 1575 | typeset status |
---|
[544] | 1576 | if [ $DRYRUN = 0 ]; then |
---|
[587] | 1577 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1578 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1579 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1580 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
[544] | 1581 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1582 | return |
---|
[257] | 1583 | fi |
---|
| 1584 | |
---|
[587] | 1585 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1586 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1587 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1588 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1589 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1590 | return |
---|
| 1591 | fi |
---|
| 1592 | # |
---|
| 1593 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1594 | cd ${R_SAVE} |
---|
| 1595 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1596 | cd ${R_FIGR} |
---|
| 1597 | fi |
---|
| 1598 | |
---|
[544] | 1599 | IGCM_sys_Dods_Rm ${1} |
---|
| 1600 | IGCM_sys_Dods_Cp ${1} |
---|
[717] | 1601 | status=0 |
---|
[676] | 1602 | |
---|
[717] | 1603 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1604 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1605 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
[257] | 1606 | fi |
---|
[544] | 1607 | else |
---|
| 1608 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1609 | fi |
---|
| 1610 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[257] | 1611 | } |
---|
| 1612 | |
---|
| 1613 | ############################################################## |
---|
| 1614 | # REBUILD OPERATOR |
---|
| 1615 | |
---|
| 1616 | function IGCM_sys_rebuild { |
---|
[544] | 1617 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1618 | if ( $DEBUG_sys ) ; then |
---|
| 1619 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1620 | fi |
---|
[717] | 1621 | |
---|
[734] | 1622 | typeset NB_ESSAI DELAI status i firstArg |
---|
[717] | 1623 | # number of tentative |
---|
| 1624 | NB_ESSAI=3 |
---|
| 1625 | # time delay between tentative |
---|
| 1626 | DELAI=2 |
---|
| 1627 | |
---|
| 1628 | i=0 |
---|
| 1629 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[719] | 1630 | /home/cont003/p86ipsl/X86_64/bin/rebuild -f -o $@ > out_rsync 2>&1 |
---|
[717] | 1631 | status=$? |
---|
| 1632 | if [ ${status} -gt 0 ] ; then |
---|
| 1633 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1634 | cat out_rsync |
---|
| 1635 | \rm out_rsync |
---|
| 1636 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1637 | firstArg=${1} |
---|
| 1638 | \rm ${firstArg} |
---|
[733] | 1639 | sleep $DELAI |
---|
[717] | 1640 | else |
---|
| 1641 | \rm out_rsync |
---|
| 1642 | break |
---|
| 1643 | fi |
---|
| 1644 | (( i = i + 1 )) |
---|
| 1645 | done |
---|
| 1646 | |
---|
[725] | 1647 | if [ ${status} -gt 0 ] ; then |
---|
[717] | 1648 | echo "IGCM_sys_rebuild : rebuild error" |
---|
[544] | 1649 | IGCM_debug_Exit "rebuild" |
---|
| 1650 | fi |
---|
[257] | 1651 | |
---|
[544] | 1652 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[257] | 1653 | } |
---|
| 1654 | |
---|
[693] | 1655 | function IGCM_sys_rebuild_station { |
---|
| 1656 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
[695] | 1657 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
[693] | 1658 | if ( $DEBUG_sys ) ; then |
---|
| 1659 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1660 | fi |
---|
| 1661 | list_opt=$@ |
---|
| 1662 | |
---|
| 1663 | # Invert Axis : t,x -> x,t |
---|
| 1664 | # t,pres,x -> x,t,pres |
---|
| 1665 | # So that we can concatenate along x |
---|
| 1666 | i=0 |
---|
| 1667 | for file_in in ${list_opt} ; do |
---|
| 1668 | (( i = i + 1)) |
---|
| 1669 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1670 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1671 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1672 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1673 | done |
---|
| 1674 | |
---|
| 1675 | # Concatenate |
---|
[695] | 1676 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
[693] | 1677 | |
---|
| 1678 | # Re-ivert file |
---|
| 1679 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1680 | |
---|
[694] | 1681 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1682 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1683 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1684 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1685 | # BEGIN reordering |
---|
| 1686 | |
---|
| 1687 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1688 | # We isolate this in the code below: |
---|
| 1689 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1690 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1691 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1692 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1693 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1694 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1695 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1696 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1697 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1698 | # typeset -Z4 j4 |
---|
| 1699 | # typeset -Z3 j3 |
---|
| 1700 | |
---|
| 1701 | # unset list_opt |
---|
| 1702 | # set +A list_opt $@ |
---|
| 1703 | |
---|
| 1704 | # Filename after rebuild |
---|
| 1705 | # file_out=${list_opt[0]} |
---|
| 1706 | # Prefix of output files |
---|
| 1707 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1708 | # Number of procs |
---|
| 1709 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1710 | |
---|
| 1711 | # iProc=0 |
---|
| 1712 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1713 | # Array containing Station as a number |
---|
| 1714 | # unset proc_stn |
---|
| 1715 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1716 | # Number of stations produced by processor proc |
---|
| 1717 | # stationLast=${#proc_stn[*]} |
---|
| 1718 | # Proc number on 4 digits |
---|
| 1719 | # j4=${iProc} |
---|
| 1720 | # Init |
---|
| 1721 | # iStation=0 |
---|
| 1722 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1723 | # Station number on 3 digits |
---|
| 1724 | # j3=${proc_stn[${iStation}]} |
---|
| 1725 | # Extract station |
---|
| 1726 | # Invert Axis : t,x -> x,t |
---|
| 1727 | # t,pres,x -> x,t,pres |
---|
| 1728 | # So that we can concatenate along x |
---|
| 1729 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1730 | # (( iStation = iStation + 1 )) |
---|
| 1731 | # done |
---|
| 1732 | # (( iProc = iProc + 1 )) |
---|
| 1733 | # done |
---|
| 1734 | |
---|
| 1735 | # Concatenate all station along x |
---|
| 1736 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1737 | |
---|
| 1738 | # Re-invert file |
---|
| 1739 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1740 | |
---|
| 1741 | # END reordering |
---|
| 1742 | |
---|
[693] | 1743 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1744 | } |
---|
| 1745 | |
---|
[651] | 1746 | ############################################################ |
---|
| 1747 | # Check of space available on temporary filesytems |
---|
| 1748 | function IGCM_sys_check_quota { |
---|
| 1749 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1750 | if ( $DEBUG_sys ) ; then |
---|
| 1751 | echo "IGCM_sys_check_quota" |
---|
| 1752 | fi |
---|
| 1753 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1754 | } |
---|
| 1755 | |
---|
[257] | 1756 | ############################################################## |
---|
| 1757 | # NCO OPERATOR |
---|
| 1758 | |
---|
[377] | 1759 | function IGCM_sys_ncap2 { |
---|
[544] | 1760 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1761 | if ( $DEBUG_sys ) ; then |
---|
| 1762 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1763 | fi |
---|
[714] | 1764 | |
---|
| 1765 | typeset NB_ESSAI DELAI status i |
---|
| 1766 | # number of tentative |
---|
| 1767 | NB_ESSAI=3 |
---|
| 1768 | # time delay between tentative |
---|
| 1769 | DELAI=2 |
---|
| 1770 | |
---|
| 1771 | i=0 |
---|
| 1772 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1773 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 1774 | status=$? |
---|
| 1775 | if [ ${status} -gt 0 ] ; then |
---|
| 1776 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 1777 | cat out_rsync |
---|
| 1778 | \rm out_rsync |
---|
| 1779 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1780 | sleep $DELAI |
---|
[714] | 1781 | else |
---|
| 1782 | \rm out_rsync |
---|
| 1783 | break |
---|
| 1784 | fi |
---|
| 1785 | (( i = i + 1 )) |
---|
| 1786 | done |
---|
| 1787 | |
---|
| 1788 | if [ ${status} -gt 0 ] ; then |
---|
| 1789 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 1790 | IGCM_debug_Exit "ncap2" |
---|
[544] | 1791 | fi |
---|
[257] | 1792 | |
---|
[544] | 1793 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
[257] | 1794 | } |
---|
| 1795 | |
---|
[375] | 1796 | function IGCM_sys_ncatted { |
---|
[544] | 1797 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1798 | if ( $DEBUG_sys ) ; then |
---|
| 1799 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1800 | fi |
---|
[714] | 1801 | |
---|
| 1802 | typeset NB_ESSAI DELAI status i |
---|
| 1803 | # number of tentative |
---|
| 1804 | NB_ESSAI=3 |
---|
| 1805 | # time delay between tentative |
---|
| 1806 | DELAI=2 |
---|
| 1807 | |
---|
| 1808 | i=0 |
---|
| 1809 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1810 | ncatted "$@" > out_rsync 2>&1 |
---|
| 1811 | status=$? |
---|
| 1812 | if [ ${status} -gt 0 ] ; then |
---|
| 1813 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 1814 | cat out_rsync |
---|
| 1815 | \rm out_rsync |
---|
| 1816 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1817 | sleep $DELAI |
---|
[714] | 1818 | else |
---|
| 1819 | \rm out_rsync |
---|
| 1820 | break |
---|
| 1821 | fi |
---|
| 1822 | (( i = i + 1 )) |
---|
| 1823 | done |
---|
| 1824 | |
---|
| 1825 | if [ ${status} -gt 0 ] ; then |
---|
| 1826 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 1827 | IGCM_debug_Exit "ncatted" |
---|
[544] | 1828 | fi |
---|
[257] | 1829 | |
---|
[544] | 1830 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[375] | 1831 | } |
---|
[257] | 1832 | |
---|
| 1833 | function IGCM_sys_ncbo { |
---|
[544] | 1834 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1835 | if ( $DEBUG_sys ) ; then |
---|
| 1836 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1837 | fi |
---|
[714] | 1838 | |
---|
| 1839 | typeset NB_ESSAI DELAI status i |
---|
| 1840 | # number of tentative |
---|
| 1841 | NB_ESSAI=3 |
---|
| 1842 | # time delay between tentative |
---|
| 1843 | DELAI=2 |
---|
| 1844 | |
---|
| 1845 | i=0 |
---|
| 1846 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1847 | ncbo $@ > out_rsync 2>&1 |
---|
| 1848 | status=$? |
---|
| 1849 | if [ ${status} -gt 0 ] ; then |
---|
| 1850 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 1851 | cat out_rsync |
---|
| 1852 | \rm out_rsync |
---|
| 1853 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1854 | sleep $DELAI |
---|
[714] | 1855 | else |
---|
| 1856 | \rm out_rsync |
---|
| 1857 | break |
---|
| 1858 | fi |
---|
| 1859 | (( i = i + 1 )) |
---|
| 1860 | done |
---|
| 1861 | |
---|
| 1862 | if [ ${status} -gt 0 ] ; then |
---|
| 1863 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 1864 | IGCM_debug_Exit "ncbo" |
---|
[544] | 1865 | fi |
---|
[257] | 1866 | |
---|
[544] | 1867 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[257] | 1868 | } |
---|
| 1869 | |
---|
| 1870 | function IGCM_sys_ncdiff { |
---|
[544] | 1871 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1872 | if ( $DEBUG_sys ) ; then |
---|
| 1873 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1874 | fi |
---|
[714] | 1875 | |
---|
| 1876 | typeset NB_ESSAI DELAI status i |
---|
| 1877 | # number of tentative |
---|
| 1878 | NB_ESSAI=3 |
---|
| 1879 | # time delay between tentative |
---|
| 1880 | DELAI=2 |
---|
| 1881 | |
---|
| 1882 | i=0 |
---|
| 1883 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1884 | ncdiff $@ > out_rsync 2>&1 |
---|
| 1885 | status=$? |
---|
| 1886 | if [ ${status} -gt 0 ] ; then |
---|
| 1887 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 1888 | cat out_rsync |
---|
| 1889 | \rm out_rsync |
---|
| 1890 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1891 | sleep $DELAI |
---|
[714] | 1892 | else |
---|
| 1893 | \rm out_rsync |
---|
| 1894 | break |
---|
| 1895 | fi |
---|
| 1896 | (( i = i + 1 )) |
---|
| 1897 | done |
---|
| 1898 | |
---|
| 1899 | if [ ${status} -gt 0 ] ; then |
---|
| 1900 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 1901 | IGCM_debug_Exit "ncdiff" |
---|
[544] | 1902 | fi |
---|
[257] | 1903 | |
---|
[544] | 1904 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[257] | 1905 | } |
---|
| 1906 | |
---|
| 1907 | function IGCM_sys_ncea { |
---|
[544] | 1908 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 1909 | if ( $DEBUG_sys ) ; then |
---|
| 1910 | echo "IGCM_sys_ncea :" $@ |
---|
| 1911 | fi |
---|
[714] | 1912 | |
---|
| 1913 | typeset NB_ESSAI DELAI status i |
---|
| 1914 | # number of tentative |
---|
| 1915 | NB_ESSAI=3 |
---|
| 1916 | # time delay between tentative |
---|
| 1917 | DELAI=2 |
---|
| 1918 | |
---|
| 1919 | i=0 |
---|
| 1920 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1921 | ncea $@ > out_rsync 2>&1 |
---|
| 1922 | status=$? |
---|
| 1923 | if [ ${status} -gt 0 ] ; then |
---|
| 1924 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 1925 | cat out_rsync |
---|
| 1926 | \rm out_rsync |
---|
| 1927 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1928 | sleep $DELAI |
---|
[714] | 1929 | else |
---|
| 1930 | \rm out_rsync |
---|
| 1931 | break |
---|
| 1932 | fi |
---|
| 1933 | (( i = i + 1 )) |
---|
| 1934 | done |
---|
| 1935 | |
---|
| 1936 | if [ ${status} -gt 0 ] ; then |
---|
| 1937 | echo "IGCM_sys_ncea : ncea error" |
---|
| 1938 | IGCM_debug_Exit "ncea" |
---|
[544] | 1939 | fi |
---|
[257] | 1940 | |
---|
[544] | 1941 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[257] | 1942 | } |
---|
| 1943 | |
---|
| 1944 | function IGCM_sys_ncecat { |
---|
[544] | 1945 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 1946 | if ( $DEBUG_sys ) ; then |
---|
| 1947 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1948 | fi |
---|
[714] | 1949 | |
---|
| 1950 | typeset NB_ESSAI DELAI status i |
---|
| 1951 | # number of tentative |
---|
| 1952 | NB_ESSAI=3 |
---|
| 1953 | # time delay between tentative |
---|
| 1954 | DELAI=2 |
---|
| 1955 | |
---|
| 1956 | i=0 |
---|
| 1957 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1958 | ncecat $@ > out_rsync 2>&1 |
---|
| 1959 | status=$? |
---|
| 1960 | if [ ${status} -gt 0 ] ; then |
---|
| 1961 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 1962 | cat out_rsync |
---|
| 1963 | \rm out_rsync |
---|
| 1964 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 1965 | sleep $DELAI |
---|
[714] | 1966 | else |
---|
| 1967 | \rm out_rsync |
---|
| 1968 | break |
---|
| 1969 | fi |
---|
| 1970 | (( i = i + 1 )) |
---|
| 1971 | done |
---|
| 1972 | |
---|
| 1973 | if [ ${status} -gt 0 ] ; then |
---|
| 1974 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 1975 | IGCM_debug_Exit "ncecat" |
---|
[544] | 1976 | fi |
---|
[257] | 1977 | |
---|
[544] | 1978 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[257] | 1979 | } |
---|
| 1980 | |
---|
| 1981 | function IGCM_sys_ncflint { |
---|
[544] | 1982 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 1983 | if ( $DEBUG_sys ) ; then |
---|
| 1984 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1985 | fi |
---|
[714] | 1986 | |
---|
| 1987 | typeset NB_ESSAI DELAI status i |
---|
| 1988 | # number of tentative |
---|
| 1989 | NB_ESSAI=3 |
---|
| 1990 | # time delay between tentative |
---|
| 1991 | DELAI=2 |
---|
| 1992 | |
---|
| 1993 | i=0 |
---|
| 1994 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1995 | ncflint $@ > out_rsync 2>&1 |
---|
| 1996 | status=$? |
---|
| 1997 | if [ ${status} -gt 0 ] ; then |
---|
| 1998 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 1999 | cat out_rsync |
---|
| 2000 | \rm out_rsync |
---|
| 2001 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2002 | sleep $DELAI |
---|
[714] | 2003 | else |
---|
| 2004 | \rm out_rsync |
---|
| 2005 | break |
---|
| 2006 | fi |
---|
| 2007 | (( i = i + 1 )) |
---|
| 2008 | done |
---|
| 2009 | |
---|
| 2010 | if [ ${status} -gt 0 ] ; then |
---|
| 2011 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2012 | IGCM_debug_Exit "ncflint" |
---|
[544] | 2013 | fi |
---|
[257] | 2014 | |
---|
[544] | 2015 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[257] | 2016 | } |
---|
| 2017 | |
---|
| 2018 | function IGCM_sys_ncks { |
---|
[544] | 2019 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2020 | if ( $DEBUG_sys ) ; then |
---|
| 2021 | echo "IGCM_sys_ncks :" $@ |
---|
| 2022 | fi |
---|
[714] | 2023 | |
---|
| 2024 | typeset NB_ESSAI DELAI status i |
---|
| 2025 | # number of tentative |
---|
| 2026 | NB_ESSAI=3 |
---|
| 2027 | # time delay between tentative |
---|
| 2028 | DELAI=2 |
---|
| 2029 | |
---|
| 2030 | i=0 |
---|
| 2031 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2032 | ncks $@ > out_rsync 2>&1 |
---|
| 2033 | status=$? |
---|
| 2034 | if [ ${status} -gt 0 ] ; then |
---|
| 2035 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2036 | cat out_rsync |
---|
| 2037 | \rm out_rsync |
---|
| 2038 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2039 | sleep $DELAI |
---|
[714] | 2040 | else |
---|
| 2041 | \rm out_rsync |
---|
| 2042 | break |
---|
| 2043 | fi |
---|
| 2044 | (( i = i + 1 )) |
---|
| 2045 | done |
---|
| 2046 | |
---|
| 2047 | if [ ${status} -gt 0 ] ; then |
---|
| 2048 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2049 | IGCM_debug_Exit "ncks" |
---|
[544] | 2050 | fi |
---|
[257] | 2051 | |
---|
[544] | 2052 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[257] | 2053 | } |
---|
| 2054 | |
---|
| 2055 | function IGCM_sys_ncpdq { |
---|
[544] | 2056 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2057 | if ( $DEBUG_sys ) ; then |
---|
| 2058 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2059 | fi |
---|
[714] | 2060 | |
---|
| 2061 | typeset NB_ESSAI DELAI status i |
---|
| 2062 | # number of tentative |
---|
| 2063 | NB_ESSAI=3 |
---|
| 2064 | # time delay between tentative |
---|
| 2065 | DELAI=2 |
---|
| 2066 | |
---|
| 2067 | i=0 |
---|
| 2068 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2069 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2070 | status=$? |
---|
| 2071 | if [ ${status} -gt 0 ] ; then |
---|
| 2072 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2073 | cat out_rsync |
---|
| 2074 | \rm out_rsync |
---|
| 2075 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2076 | sleep $DELAI |
---|
[714] | 2077 | else |
---|
| 2078 | \rm out_rsync |
---|
| 2079 | break |
---|
| 2080 | fi |
---|
| 2081 | (( i = i + 1 )) |
---|
| 2082 | done |
---|
| 2083 | |
---|
| 2084 | if [ ${status} -gt 0 ] ; then |
---|
| 2085 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2086 | IGCM_debug_Exit "ncpdq" |
---|
[544] | 2087 | fi |
---|
[257] | 2088 | |
---|
[544] | 2089 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[257] | 2090 | } |
---|
| 2091 | |
---|
| 2092 | function IGCM_sys_ncra { |
---|
[544] | 2093 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2094 | if ( $DEBUG_sys ) ; then |
---|
| 2095 | echo "IGCM_sys_ncra :" $@ |
---|
| 2096 | fi |
---|
[714] | 2097 | |
---|
| 2098 | typeset NB_ESSAI DELAI status i |
---|
| 2099 | # number of tentative |
---|
| 2100 | NB_ESSAI=3 |
---|
| 2101 | # time delay between tentative |
---|
| 2102 | DELAI=2 |
---|
| 2103 | |
---|
| 2104 | i=0 |
---|
| 2105 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2106 | ncra $@ > out_rsync 2>&1 |
---|
| 2107 | status=$? |
---|
| 2108 | if [ ${status} -gt 0 ] ; then |
---|
| 2109 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2110 | cat out_rsync |
---|
| 2111 | \rm out_rsync |
---|
| 2112 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2113 | sleep $DELAI |
---|
[714] | 2114 | else |
---|
| 2115 | \rm out_rsync |
---|
| 2116 | break |
---|
| 2117 | fi |
---|
| 2118 | (( i = i + 1 )) |
---|
| 2119 | done |
---|
| 2120 | |
---|
| 2121 | if [ ${status} -gt 0 ] ; then |
---|
| 2122 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2123 | IGCM_debug_Exit "ncra" |
---|
[544] | 2124 | fi |
---|
[257] | 2125 | |
---|
[544] | 2126 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[257] | 2127 | } |
---|
| 2128 | |
---|
| 2129 | function IGCM_sys_ncrcat { |
---|
[544] | 2130 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2131 | if ( $DEBUG_sys ) ; then |
---|
| 2132 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2133 | fi |
---|
[714] | 2134 | |
---|
| 2135 | typeset NB_ESSAI DELAI status i |
---|
| 2136 | # number of tentative |
---|
| 2137 | NB_ESSAI=3 |
---|
| 2138 | # time delay between tentative |
---|
| 2139 | DELAI=2 |
---|
| 2140 | |
---|
| 2141 | i=0 |
---|
| 2142 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2143 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2144 | status=$? |
---|
| 2145 | if [ ${status} -gt 0 ] ; then |
---|
| 2146 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2147 | cat out_rsync |
---|
| 2148 | \rm out_rsync |
---|
| 2149 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2150 | sleep $DELAI |
---|
[714] | 2151 | else |
---|
| 2152 | \rm out_rsync |
---|
| 2153 | break |
---|
| 2154 | fi |
---|
| 2155 | (( i = i + 1 )) |
---|
| 2156 | done |
---|
| 2157 | |
---|
| 2158 | if [ ${status} -gt 0 ] ; then |
---|
| 2159 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2160 | #IGCM_debug_Exit "ncrcat" |
---|
[544] | 2161 | fi |
---|
[257] | 2162 | |
---|
[544] | 2163 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[257] | 2164 | } |
---|
| 2165 | |
---|
| 2166 | function IGCM_sys_ncrename { |
---|
[544] | 2167 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2168 | if ( $DEBUG_sys ) ; then |
---|
| 2169 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2170 | fi |
---|
[714] | 2171 | |
---|
| 2172 | typeset NB_ESSAI DELAI status i |
---|
| 2173 | # number of tentative |
---|
| 2174 | NB_ESSAI=3 |
---|
| 2175 | # time delay between tentative |
---|
| 2176 | DELAI=2 |
---|
| 2177 | |
---|
| 2178 | i=0 |
---|
| 2179 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2180 | ncrename $@ > out_rsync 2>&1 |
---|
| 2181 | status=$? |
---|
| 2182 | if [ ${status} -gt 0 ] ; then |
---|
| 2183 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2184 | cat out_rsync |
---|
| 2185 | \rm out_rsync |
---|
| 2186 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2187 | sleep $DELAI |
---|
[714] | 2188 | else |
---|
| 2189 | \rm out_rsync |
---|
| 2190 | break |
---|
| 2191 | fi |
---|
| 2192 | (( i = i + 1 )) |
---|
| 2193 | done |
---|
| 2194 | |
---|
| 2195 | if [ ${status} -gt 0 ] ; then |
---|
| 2196 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2197 | IGCM_debug_Exit "ncrename" |
---|
[544] | 2198 | fi |
---|
[257] | 2199 | |
---|
[544] | 2200 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[257] | 2201 | } |
---|
| 2202 | |
---|
| 2203 | function IGCM_sys_ncwa { |
---|
[544] | 2204 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2205 | if ( $DEBUG_sys ) ; then |
---|
| 2206 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2207 | fi |
---|
[714] | 2208 | |
---|
| 2209 | typeset NB_ESSAI DELAI status i |
---|
| 2210 | # number of tentative |
---|
| 2211 | NB_ESSAI=3 |
---|
| 2212 | # time delay between tentative |
---|
| 2213 | DELAI=2 |
---|
| 2214 | |
---|
| 2215 | i=0 |
---|
| 2216 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2217 | ncwa $@ > out_rsync 2>&1 |
---|
| 2218 | status=$? |
---|
| 2219 | if [ ${status} -gt 0 ] ; then |
---|
| 2220 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2221 | cat out_rsync |
---|
| 2222 | \rm out_rsync |
---|
| 2223 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2224 | sleep $DELAI |
---|
[714] | 2225 | else |
---|
| 2226 | \rm out_rsync |
---|
| 2227 | break |
---|
| 2228 | fi |
---|
| 2229 | (( i = i + 1 )) |
---|
| 2230 | done |
---|
| 2231 | |
---|
| 2232 | if [ ${status} -gt 0 ] ; then |
---|
| 2233 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2234 | IGCM_debug_Exit "ncwa" |
---|
[544] | 2235 | fi |
---|
[257] | 2236 | |
---|
[544] | 2237 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[257] | 2238 | } |
---|
| 2239 | |
---|
[285] | 2240 | ############################################################## |
---|
| 2241 | # CDO OPERATOR |
---|
| 2242 | |
---|
| 2243 | function IGCM_sys_cdo { |
---|
[544] | 2244 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 2245 | if ( $DEBUG_sys ) ; then |
---|
| 2246 | echo "IGCM_sys_cdo :" $@ |
---|
| 2247 | fi |
---|
[714] | 2248 | |
---|
| 2249 | typeset status |
---|
| 2250 | |
---|
| 2251 | \cdo $@ > out_rsync 2>&1 |
---|
| 2252 | status=$? |
---|
| 2253 | if [ ${status} -gt 0 ] ; then |
---|
| 2254 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2255 | cat out_rsync |
---|
| 2256 | \rm out_rsync |
---|
[544] | 2257 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2258 | return 1 |
---|
| 2259 | else |
---|
| 2260 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2261 | return 0 |
---|
| 2262 | fi |
---|
[285] | 2263 | |
---|
[544] | 2264 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[285] | 2265 | } |
---|
| 2266 | |
---|
[257] | 2267 | ############################################################ |
---|
| 2268 | # Activate Running Environnment Variables |
---|
| 2269 | |
---|
| 2270 | function IGCM_sys_activ_variables { |
---|
[544] | 2271 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 2272 | if ( $DEBUG_sys ) ; then |
---|
| 2273 | echo "IGCM_sys_activ_variables" |
---|
| 2274 | fi |
---|
| 2275 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[257] | 2276 | } |
---|
| 2277 | |
---|
| 2278 | ############################################################ |
---|
| 2279 | # Desactivate Running Environnment Variables |
---|
| 2280 | |
---|
| 2281 | function IGCM_sys_desactiv_variables { |
---|
[544] | 2282 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 2283 | if ( $DEBUG_sys ) ; then |
---|
| 2284 | echo "IGCM_sys_desactiv_variables" |
---|
| 2285 | fi |
---|
| 2286 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[257] | 2287 | } |
---|
| 2288 | |
---|
| 2289 | ############################################################ |
---|
| 2290 | # Build run file |
---|
| 2291 | |
---|
| 2292 | function IGCM_sys_build_run_file { |
---|
[544] | 2293 | IGCM_debug_PushStack "IGCM_sys_build_run_file" |
---|
| 2294 | if ( $DEBUG_sys ) ; then |
---|
| 2295 | echo "IGCM_sys_build_run_file" |
---|
| 2296 | fi |
---|
| 2297 | IGCM_debug_PopStack "IGCM_sys_build_run_file" |
---|
[257] | 2298 | } |
---|