[428] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sébastien Denvil |
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| 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: 423 $ Revision of last commit |
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| 7 | # $Author:: sdipsl $ Author of last commit |
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| 8 | # $Date:: 2011-02-18 16:49:14 +0100 (ven. 18 févr. 20#$ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[809] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[428] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for IITM IBM machine |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[809] | 24 | #D- This ksh library if a layer under some usefull |
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[428] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[428] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[809] | 64 | # Host and user names |
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[428] | 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | # $hostname of the MASTER job |
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[810] | 70 | ntypeset -r MASTER=iitm01 |
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[428] | 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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[810] | 77 | # Submit command |
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| 78 | typeset SUBMIT=${SUBMIT:=/usr/lpp/LoadL/full/bin/llsubmit} |
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[428] | 79 | # rsync with path |
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| 80 | typeset -r RSYNC=/usr/bin/rsync |
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| 81 | # RSYNC_opt args to rsync |
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| 82 | typeset -r RSYNC_opt="-va" |
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[810] | 83 | # ie storage filesystem |
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| 84 | typeset -r STOREHOST=iitm01 |
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| 85 | typeset -r REMOTE_RSYNC=/usr/bin/rsync |
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[428] | 86 | |
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| 87 | #==================================================== |
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[810] | 88 | # Source default environment |
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| 89 | #==================================================== |
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| 90 | ##. /etc/profile |
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| 91 | |
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| 92 | #==================================================== |
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| 93 | # Set environment tools (ferret, nco, cdo) |
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| 94 | #==================================================== |
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| 95 | # Not applicable here |
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| 96 | |
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| 97 | #==================================================== |
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[428] | 98 | # Host specific DIRECTORIES |
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| 99 | #==================================================== |
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| 100 | |
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| 101 | #==================================================== |
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[810] | 102 | #- Mirror libIGCM from iitm to a post-processing machine |
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| 103 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 104 | |
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| 105 | #==================================================== |
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| 106 | #- libIGCM_POST for frontend |
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| 107 | typeset -r libIGCM_POST=${libIGCM} |
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| 108 | |
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| 109 | #==================================================== |
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[428] | 110 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 111 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 112 | |
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| 113 | #==================================================== |
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| 114 | #- SUBMIT_DIR : submission dir |
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| 115 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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| 116 | |
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| 117 | #==================================================== |
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[725] | 118 | #- IN |
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| 119 | typeset -r R_IN=${R_IN:=/gpfs1/home/sabin} |
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| 120 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/gpfs1/home/sabin} |
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| 121 | |
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| 122 | #==================================================== |
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[428] | 123 | #- ARCHIVE |
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[810] | 124 | typeset ARCHIVE=$( echo ${HOME} | sed -e "s/gpfs1/gpfs3/" ) |
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[428] | 125 | |
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| 126 | #==================================================== |
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[810] | 127 | #- STORAGE (dedicated to small/medium files) |
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| 128 | typeset STORAGE=${ARCHIVE} |
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[428] | 129 | |
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| 130 | #==================================================== |
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[810] | 131 | #- R_OUT |
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| 132 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[428] | 133 | |
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| 134 | #==================================================== |
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[810] | 135 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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| 136 | typeset R_FIG=${WORKDIR}/IGCM_OUT |
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[428] | 137 | |
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| 138 | #==================================================== |
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[810] | 139 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 140 | typeset -r R_BUF=${WORKDIR}/IGCM_OUT |
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| 141 | |
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| 142 | #==================================================== |
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[428] | 143 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 144 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${ARCHIVE}/RUN/${LOADL_STEP_ID}} |
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| 145 | |
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| 146 | #==================================================== |
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| 147 | #- HOST_MPIRUN_COMMAND |
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[810] | 148 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time poe"} |
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[428] | 149 | |
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| 150 | #==================================================== |
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| 151 | #- Max number of arguments passed to nco operator or demigration command |
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| 152 | UNIX_MAX_LIMIT=360 |
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| 153 | |
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[810] | 154 | #==================================================== |
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| 155 | #- set PackDefault true on curie |
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| 156 | PackDefault=false |
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| 157 | |
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| 158 | #==================================================== |
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| 159 | #- Number of core per node (max number of OpenMP task) |
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| 160 | NUM_COREPERNODE=2 |
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| 161 | |
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| 162 | #==================================================== |
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| 163 | #- Default number of MPI task for IPSL coupled model |
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| 164 | #- required for backward compatibility |
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| 165 | #- |
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| 166 | DEFAULT_NUM_PROC_OCE=5 |
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| 167 | DEFAULT_NUM_PROC_CPL=1 |
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| 168 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 169 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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| 170 | |
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[428] | 171 | #D-#================================================== |
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[725] | 172 | #D-function IGCM_sys_ChangeArchive |
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| 173 | #D-* Purpose: Just a dummy call on this machine |
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| 174 | #D-* Examples: |
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| 175 | #D- |
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| 176 | function IGCM_sys_ChangeArchive { |
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| 177 | IGCM_debug_Print 1 " dummy function : IGCM_sys_ChangeArchive " |
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| 178 | } |
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| 179 | |
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| 180 | #D-#================================================== |
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[428] | 181 | #D-function IGCM_sys_RshMaster |
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| 182 | #D-* Purpose: Just a fake command to wrapp |
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| 183 | #D- IGCM_card call in post-treatment |
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| 184 | #D- Ulam do not see brodie filesystem |
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| 185 | #D- Cesium do not see all mercure filesystem |
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| 186 | #D- That's why we need this hack. |
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| 187 | #D-* Examples: |
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| 188 | #D- |
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| 189 | function IGCM_sys_RshMaster { |
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[810] | 190 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 191 | /bin/ksh <<-EOF |
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| 192 | export libIGCM=${libIGCM} |
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| 193 | export DEBUG_debug=${DEBUG_debug} |
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| 194 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 195 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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[428] | 196 | ${@} |
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| 197 | EOF |
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[810] | 198 | if [ $? -gt 0 ] ; then |
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| 199 | echo "IGCM_sys_RshMaster : erreur." |
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| 200 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 201 | fi |
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| 202 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[428] | 203 | } |
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| 204 | |
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| 205 | #D-#================================================== |
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| 206 | #D-function IGCM_sys_RshArchive |
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| 207 | #D-* Purpose: Archive rsh command |
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| 208 | #D-* Examples: |
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| 209 | #D- |
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| 210 | function IGCM_sys_RshArchive { |
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[810] | 211 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[811] | 212 | /bin/ksh <<-EOF |
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[428] | 213 | ${@} |
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| 214 | EOF |
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[811] | 215 | status=$? |
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[810] | 216 | if [ ${status} -gt 0 ] ; then |
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| 217 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}" |
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| 218 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 219 | fi |
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| 220 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[428] | 221 | } |
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| 222 | |
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| 223 | #D-#================================================== |
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| 224 | #D-function IGCM_sys_RshPost |
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| 225 | #D-* Purpose: Post-process rsh command |
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| 226 | #D-* Examples: |
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| 227 | #D- |
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| 228 | function IGCM_sys_RshPost { |
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[810] | 229 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 230 | if ( $DEBUG_sys ) ; then |
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| 231 | echo "IGCM_sys_RshPost :" $@ |
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| 232 | fi |
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| 233 | |
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| 234 | # keep standard input to keep it for postpone if ulam don't answer |
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| 235 | cat >/tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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| 236 | |
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| 237 | /bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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| 238 | if [ $? -gt 0 ] ; then |
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| 239 | echo "IGCM_sys_RshPost : erreur." |
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| 240 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 241 | fi |
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| 242 | # delete temporary file |
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| 243 | \rm /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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| 244 | |
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| 245 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[428] | 246 | } |
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| 247 | |
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| 248 | #D-#================================================== |
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| 249 | #D-function IGCM_sys_SendMail |
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| 250 | #D-* Purpose: Send mail when simulation is over |
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| 251 | #D-* Examples: |
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| 252 | #D- |
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| 253 | function IGCM_sys_SendMail { |
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[810] | 254 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 255 | if ( $DEBUG_sys ) ; then |
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| 256 | echo "IGCM_sys_SendMail :" $@ |
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| 257 | fi |
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[437] | 258 | |
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[922] | 259 | if [ X${1} = XAccounting ] ; then |
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| 260 | status=Accounting |
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| 261 | mailText=jobAccounting.mail |
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| 262 | elif ( ${ExitFlag} ) ; then |
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[810] | 263 | status=failed |
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[922] | 264 | mailText=jobEnd.mail |
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[810] | 265 | else |
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| 266 | status=completed |
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[922] | 267 | mailText=jobEnd.mail |
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[810] | 268 | fi |
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| 269 | |
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[922] | 270 | # Update selected mail template |
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| 271 | while read -r line; do |
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| 272 | eval echo $line >> mail.txt ; |
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| 273 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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[437] | 274 | |
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[810] | 275 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[922] | 276 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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[810] | 277 | elif [ -f ~/.forward ] ; then |
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[922] | 278 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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[810] | 279 | else |
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[922] | 280 | mailx -s "${config_UserChoices_JobName} ${status}" ${USER} < mail.txt |
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[810] | 281 | fi |
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[428] | 282 | |
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[810] | 283 | sleep 10 |
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[922] | 284 | rm -f mail.txt |
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[810] | 285 | |
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| 286 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[428] | 287 | } |
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| 288 | |
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| 289 | #D-#================================================== |
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| 290 | #D-function IGCM_sys_Mkdir |
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| 291 | #D-* Purpose: Master locale mkdir command |
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| 292 | #D-* Examples: |
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| 293 | #D- |
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| 294 | function IGCM_sys_Mkdir { |
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[810] | 295 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 296 | if ( $DEBUG_sys ) ; then |
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| 297 | echo "IGCM_sys_Mkdir :" $@ |
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| 298 | fi |
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| 299 | if [ ! -d ${1} ]; then |
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| 300 | \mkdir -p $1 |
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| 301 | if [ $? -gt 0 ] ; then |
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[786] | 302 | echo "IGCM_sys_Mkdir : erreur." |
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| 303 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[428] | 304 | fi |
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[810] | 305 | fi |
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| 306 | # vérification : |
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| 307 | if [ ! -d ${1} ] ; then |
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| 308 | echo "IGCM_sys_Mkdir : erreur." |
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| 309 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 310 | fi |
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| 311 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[428] | 312 | } |
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| 313 | |
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| 314 | #D-#================================================== |
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| 315 | #D-function IGCM_sys_MkdirArchive |
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| 316 | #D-* Purpose: Mkdir on Archive |
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| 317 | #D-* Examples: |
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| 318 | #D- |
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| 319 | function IGCM_sys_MkdirArchive { |
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[810] | 320 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 321 | if ( $DEBUG_sys ) ; then |
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| 322 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 323 | fi |
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| 324 | #- creation de repertoire sur le serveur fichier |
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| 325 | mkdir -p $1 |
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| 326 | status=$? |
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[428] | 327 | |
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[810] | 328 | if [ ${status} -gt 0 ] ; then |
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| 329 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}" |
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| 330 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 331 | fi |
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| 332 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[428] | 333 | } |
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| 334 | |
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| 335 | #D-#================================================== |
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| 336 | #D-function IGCM_sys_MkdirWork |
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| 337 | #D-* Purpose: Mkdir on Work |
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| 338 | #D-* Examples: |
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| 339 | #D- |
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| 340 | function IGCM_sys_MkdirWork { |
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[810] | 341 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 342 | if ( $DEBUG_sys ) ; then |
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| 343 | echo "IGCM_sys_MkdirWork :" $@ |
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| 344 | fi |
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| 345 | #- creation de repertoire sur le serveur fichier |
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| 346 | if [ ! -d ${1} ]; then |
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| 347 | \mkdir -p $1 |
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| 348 | if [ $? -gt 0 ] ; then |
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| 349 | echo "IGCM_sys_MkdirWork : erreur." |
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| 350 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[428] | 351 | fi |
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[810] | 352 | fi |
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| 353 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[428] | 354 | } |
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| 355 | |
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| 356 | #D-#================================================== |
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| 357 | #D-function IGCM_sys_Cd |
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| 358 | #D-* Purpose: master cd command |
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| 359 | #D-* Examples: |
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| 360 | #D- |
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| 361 | function IGCM_sys_Cd { |
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[810] | 362 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 363 | if ( $DEBUG_sys ) ; then |
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| 364 | echo "IGCM_sys_Cd :" $@ |
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| 365 | fi |
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| 366 | \cd $1 |
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| 367 | if [ $? -gt 0 ] ; then |
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| 368 | echo "IGCM_sys_Cd : erreur." |
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| 369 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 370 | fi |
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| 371 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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[428] | 372 | } |
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| 373 | |
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| 374 | #D-#================================================== |
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| 375 | #D-function IGCM_sys_Chmod |
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| 376 | #D-* Purpose: Chmod |
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| 377 | #D-* Examples: |
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| 378 | #D- |
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| 379 | function IGCM_sys_Chmod { |
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[810] | 380 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 381 | if ( $DEBUG_sys ) ; then |
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| 382 | echo "IGCM_sys_Chmod :" $@ |
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| 383 | fi |
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| 384 | \chmod $@ |
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| 385 | if [ $? -gt 0 ] ; then |
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| 386 | echo "IGCM_sys_Chmod : erreur." |
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| 387 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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| 388 | fi |
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| 389 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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[428] | 390 | } |
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| 391 | |
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| 392 | #D-#================================================== |
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| 393 | #D-function IGCM_sys_FileSize |
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| 394 | #D-* Purpose: Filesize |
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| 395 | #D-* Examples: |
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| 396 | #D- |
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| 397 | function IGCM_sys_FileSize { |
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[810] | 398 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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[428] | 399 | |
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[810] | 400 | typeset sizeF |
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| 401 | set +A sizeF -- $( ls -la ${1} ) |
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| 402 | if [ $? -gt 0 ] ; then |
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| 403 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 404 | fi |
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| 405 | eval ${2}=${sizeF[4]} |
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[428] | 406 | |
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[810] | 407 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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[428] | 408 | } |
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| 409 | |
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| 410 | #D-#================================================== |
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| 411 | #D-function IGCM_sys_TestDir |
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| 412 | #D-* Purpose: Test Directory that must exists |
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| 413 | #D-* Examples: |
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| 414 | #D- |
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| 415 | function IGCM_sys_TestDir { |
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[810] | 416 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 417 | if ( $DEBUG_sys ) ; then |
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| 418 | echo "IGCM_sys_TestDir :" $@ |
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| 419 | fi |
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| 420 | typeset ExistFlag |
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| 421 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 422 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[428] | 423 | |
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[810] | 424 | return ${ExistFlag} |
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[428] | 425 | } |
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| 426 | |
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| 427 | #D-#================================================== |
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| 428 | #D-function IGCM_sys_TestDirArchive |
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| 429 | #D-* Purpose: Test Directory that must exists on Archive |
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| 430 | #D-* Examples: |
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| 431 | #D- |
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| 432 | function IGCM_sys_TestDirArchive { |
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[810] | 433 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 434 | if ( $DEBUG_sys ) ; then |
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| 435 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 436 | fi |
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| 437 | typeset ExistFlag |
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| 438 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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| 439 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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| 440 | return ${ExistFlag} |
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| 441 | } |
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[428] | 442 | |
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[810] | 443 | #D-#================================================== |
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| 444 | #D-function IGCM_sys_IsFileArchived |
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| 445 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 446 | #D-* Examples: |
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| 447 | #D- |
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| 448 | function IGCM_sys_IsFileArchived { |
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| 449 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 450 | if ( $DEBUG_sys ) ; then |
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| 451 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 452 | fi |
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| 453 | typeset IsArchivedFlag |
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[818] | 454 | IsArchivedFlag=$( [ "X$( echo $@ | grep \/gpfs3 )" != "X" ] && echo 0 || echo 1 ) |
---|
[810] | 455 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 456 | |
---|
| 457 | return ${IsArchivedFlag} |
---|
[428] | 458 | } |
---|
| 459 | |
---|
| 460 | #D-#================================================== |
---|
| 461 | #D-function IGCM_sys_TestFileArchive |
---|
| 462 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 463 | #D-* Examples: |
---|
| 464 | #D- |
---|
| 465 | function IGCM_sys_TestFileArchive { |
---|
[810] | 466 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 467 | typeset ExistFlag |
---|
| 468 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
---|
| 469 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[428] | 470 | |
---|
[810] | 471 | return ${ExistFlag} |
---|
[428] | 472 | } |
---|
| 473 | |
---|
| 474 | #D-#================================================== |
---|
[810] | 475 | #D-function IGCM_sys_TestFileBuffer |
---|
| 476 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 477 | #D-* Examples: |
---|
| 478 | #D- |
---|
| 479 | function IGCM_sys_TestFileBuffer { |
---|
| 480 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 481 | typeset ExistFlag |
---|
| 482 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 483 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 484 | |
---|
| 485 | return ${ExistFlag} |
---|
| 486 | } |
---|
| 487 | |
---|
| 488 | #D-#================================================== |
---|
[428] | 489 | #D-function IGCM_sys_CountFileArchive |
---|
| 490 | #D-* Purpose: Count files on Archive filesystem |
---|
| 491 | #D-* Examples: |
---|
| 492 | #D- |
---|
| 493 | function IGCM_sys_CountFileArchive { |
---|
[810] | 494 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 495 | #Command depends on targeted file system |
---|
| 496 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
| 497 | if [ $? = 0 ] ; then |
---|
[428] | 498 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
---|
[810] | 499 | status=$? |
---|
| 500 | else |
---|
| 501 | ls ${@} 2>/dev/null | wc -l |
---|
| 502 | status=$? |
---|
| 503 | fi |
---|
| 504 | if [ ${status} -gt 0 ] ; then |
---|
| 505 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 506 | fi |
---|
| 507 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[428] | 508 | } |
---|
| 509 | |
---|
| 510 | #D-#================================================== |
---|
[810] | 511 | #D-function IGCM_sys_CountFileBuffer |
---|
| 512 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 513 | #D-* Examples: |
---|
| 514 | #D- |
---|
| 515 | function IGCM_sys_CountFileBuffer { |
---|
| 516 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 517 | ls ${@} 2>/dev/null | wc -l |
---|
| 518 | if [ $? -gt 0 ] ; then |
---|
| 519 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 520 | fi |
---|
| 521 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 522 | } |
---|
| 523 | |
---|
| 524 | #D-#================================================== |
---|
[428] | 525 | #D-function IGCM_sys_Tree |
---|
| 526 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 527 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 528 | #D- |
---|
| 529 | function IGCM_sys_Tree { |
---|
[810] | 530 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 531 | if ( $DEBUG_sys ) ; then |
---|
| 532 | echo "IGCM_sys_Tree :" $@ |
---|
| 533 | fi |
---|
[428] | 534 | |
---|
[811] | 535 | \tree -f $@ |
---|
[428] | 536 | |
---|
[810] | 537 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[428] | 538 | } |
---|
| 539 | |
---|
| 540 | #D-#================================================== |
---|
| 541 | #D-function IGCM_sys_Tar |
---|
[810] | 542 | #D-* Purpose: master tar command |
---|
[428] | 543 | #D-* Examples: |
---|
| 544 | #D- |
---|
| 545 | function IGCM_sys_Tar { |
---|
[810] | 546 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 547 | if ( $DEBUG_sys ) ; then |
---|
| 548 | echo "IGCM_sys_Tar :" $@ |
---|
| 549 | fi |
---|
| 550 | \tar cf $@ |
---|
| 551 | if [ $? -gt 0 ] ; then |
---|
| 552 | echo "IGCM_sys_Tar : erreur." |
---|
| 553 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 554 | fi |
---|
| 555 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[428] | 556 | } |
---|
| 557 | |
---|
| 558 | #D-#================================================== |
---|
| 559 | #D-function IGCM_sys_UnTar |
---|
| 560 | #D-* Purpose: master un-tar command |
---|
| 561 | #D-* Examples: |
---|
| 562 | #D- |
---|
| 563 | function IGCM_sys_UnTar { |
---|
[810] | 564 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 565 | if ( $DEBUG_sys ) ; then |
---|
| 566 | echo "IGCM_sys_UnTar :" $@ |
---|
| 567 | fi |
---|
| 568 | \tar xvf $1 |
---|
| 569 | if [ $? -gt 0 ] ; then |
---|
| 570 | echo "IGCM_sys_UnTar : erreur." |
---|
| 571 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 572 | fi |
---|
| 573 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[428] | 574 | } |
---|
| 575 | |
---|
| 576 | #D-#================================================== |
---|
| 577 | #D-function IGCM_sys_Qsub |
---|
| 578 | #D-* Purpose: Qsub new job |
---|
| 579 | #D-* Examples: |
---|
| 580 | #D- |
---|
| 581 | function IGCM_sys_Qsub { |
---|
[810] | 582 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 583 | |
---|
[811] | 584 | typeset status |
---|
[810] | 585 | |
---|
| 586 | if ( $DEBUG_sys ) ; then |
---|
| 587 | echo "IGCM_sys_Qsub :" $@ |
---|
| 588 | fi |
---|
| 589 | # We have to change output/error file |
---|
| 590 | [ ${#@} = 1 ] && REP_FOR_JOB=${SUBMIT_DIR} |
---|
| 591 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
| 592 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Output}:" \ |
---|
[811] | 593 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Output}:" \ |
---|
| 594 | $1 > ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
| 595 | cd $REP_FOR_JOB ; /usr/lpp/LoadL/full/bin/llsubmit JOB_FOR_IGCM ; status=$? ; cd - ; |
---|
[810] | 596 | |
---|
[811] | 597 | if [ ${status} -gt 0 ] ; then |
---|
| 598 | IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}" |
---|
[810] | 599 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 600 | else |
---|
| 601 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
| 602 | fi |
---|
| 603 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[428] | 604 | } |
---|
| 605 | |
---|
| 606 | #D-#================================================== |
---|
| 607 | #D-function IGCM_sys_QsubPost |
---|
| 608 | #D-* Purpose: Qsub new job on scalaire |
---|
| 609 | #D-* Examples: |
---|
| 610 | #D- |
---|
| 611 | function IGCM_sys_QsubPost { |
---|
[810] | 612 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 613 | |
---|
[811] | 614 | typeset status |
---|
[810] | 615 | |
---|
| 616 | if ( $DEBUG_sys ) ; then |
---|
| 617 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 618 | fi |
---|
| 619 | # We have to change output/error file |
---|
| 620 | [ ${#@} = 1 ] && REP_FOR_JOB=${POST_DIR} |
---|
| 621 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
| 622 | |
---|
| 623 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Post_Output}.out:" \ |
---|
[811] | 624 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Post_Output}.out:" \ |
---|
| 625 | ${libIGCM_POST}/$1.job > ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
[810] | 626 | |
---|
[811] | 627 | cd $REP_FOR_JOB ; /usr/lpp/LoadL/full/bin/llsubmit JOB_FOR_IGCM ; status=$? ; cd - ; |
---|
| 628 | if [ ${status} -gt 0 ] ; then |
---|
| 629 | IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}" |
---|
[810] | 630 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 631 | else |
---|
| 632 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
| 633 | fi |
---|
| 634 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[428] | 635 | } |
---|
| 636 | |
---|
| 637 | #D-************************* |
---|
[809] | 638 | #D- File transfer functions |
---|
[428] | 639 | #D-************************* |
---|
| 640 | #D- |
---|
| 641 | |
---|
| 642 | #D-#================================================== |
---|
| 643 | #D-function IGCM_sys_Rsync_out |
---|
| 644 | #D-* Purpose: treat return val of rsync |
---|
| 645 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 646 | #D- Error values and explanations can depend on your system version. |
---|
| 647 | function IGCM_sys_Rsync_out { |
---|
[810] | 648 | status=$1 |
---|
| 649 | if [ ! $status ] ; then |
---|
| 650 | echo "rsync error !" |
---|
| 651 | fi |
---|
[428] | 652 | |
---|
[810] | 653 | if [ $MYLANG = "fr" ]; then |
---|
| 654 | case $status in |
---|
| 655 | 0) return ;; |
---|
| 656 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 657 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 658 | return;; |
---|
| 659 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 660 | echo "Incompatibilité de protocole." |
---|
| 661 | return;; |
---|
| 662 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 663 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 664 | echo "répertoires" |
---|
| 665 | return;; |
---|
| 666 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 667 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 668 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 669 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 670 | echo "pas par le serveur a été spécifiée." |
---|
| 671 | return;; |
---|
| 672 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 673 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 674 | return;; |
---|
| 675 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 676 | echo "Erreur d'entrée sortie fichier" |
---|
| 677 | return;; |
---|
| 678 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 679 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 680 | return;; |
---|
| 681 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 682 | echo "Erreur avec les diagnostics du programme" |
---|
| 683 | return;; |
---|
| 684 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 685 | echo "Erreur dans le code IPC" |
---|
| 686 | return;; |
---|
| 687 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 688 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 689 | return;; |
---|
| 690 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 691 | echo "Une erreur retournée par waitpid()" |
---|
| 692 | return;; |
---|
| 693 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 694 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 695 | return;; |
---|
| 696 | 23) echo "" |
---|
| 697 | echo "Erreur fichier inexistant" |
---|
| 698 | return;; |
---|
| 699 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 700 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 701 | return;; |
---|
| 702 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
| 703 | return;; |
---|
| 704 | esac |
---|
| 705 | elif [ $MYLANG = "en" ] ; then |
---|
| 706 | case $status in |
---|
| 707 | 0) return;; |
---|
| 708 | 1) echo "rsync error : Syntax or usage error " |
---|
| 709 | return;; |
---|
| 710 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 711 | return;; |
---|
| 712 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 713 | return;; |
---|
| 714 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 715 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 716 | echo "them; or an option was specified that is supported by the client and" |
---|
| 717 | echo "not by the server." |
---|
| 718 | return;; |
---|
| 719 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 720 | return;; |
---|
| 721 | 10) echo "rsync error : Error in socket I/O " |
---|
| 722 | return;; |
---|
| 723 | 11) echo "rsync error : Error in file I/O " |
---|
| 724 | return;; |
---|
| 725 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 726 | return;; |
---|
| 727 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 728 | return;; |
---|
| 729 | 14) echo "rsync error : Error in IPC code " |
---|
| 730 | return;; |
---|
| 731 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 732 | return;; |
---|
| 733 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 734 | return;; |
---|
| 735 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 736 | return;; |
---|
| 737 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 738 | return;; |
---|
| 739 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 740 | return;; |
---|
| 741 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 742 | return;; |
---|
| 743 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
| 744 | return;; |
---|
| 745 | esac |
---|
| 746 | else |
---|
| 747 | echo "unknown language $MYLANG." |
---|
| 748 | return |
---|
| 749 | fi |
---|
[428] | 750 | } |
---|
| 751 | |
---|
| 752 | #D-#================================================== |
---|
[810] | 753 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 754 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
| 755 | #D-* Examples: |
---|
| 756 | #D- |
---|
| 757 | function IGCM_sys_Mirror_libIGCM { |
---|
| 758 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 759 | if ( $DEBUG_sys ) ; then |
---|
| 760 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 761 | fi |
---|
| 762 | |
---|
| 763 | typeset status |
---|
| 764 | |
---|
| 765 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
| 766 | |
---|
[938] | 767 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > /tmp/out_command.$$ 2>&1 |
---|
| 768 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> /tmp/out_command.$$ 2>&1 |
---|
[810] | 769 | status=$? |
---|
| 770 | |
---|
| 771 | if [ ${status} -gt 0 ] ; then |
---|
| 772 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
[938] | 773 | cat /tmp/out_command.$$ |
---|
[810] | 774 | fi |
---|
| 775 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
| 776 | } |
---|
| 777 | |
---|
| 778 | #D-#================================================== |
---|
[428] | 779 | #D-function IGCM_sys_Cp |
---|
| 780 | #D-* Purpose: generic cp |
---|
| 781 | #D-* Examples: |
---|
| 782 | #D- |
---|
| 783 | function IGCM_sys_Cp { |
---|
[810] | 784 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 785 | if ( $DEBUG_sys ) ; then |
---|
| 786 | echo "IGCM_sys_Cp :" $@ |
---|
| 787 | fi |
---|
[428] | 788 | |
---|
[810] | 789 | typeset status |
---|
[428] | 790 | |
---|
[938] | 791 | echo cp $@ > /tmp/out_command.$$ 2>&1 |
---|
| 792 | \cp $@ >> /tmp/out_command.$$ 2>&1 |
---|
[810] | 793 | status=$? |
---|
[428] | 794 | |
---|
[810] | 795 | if [ ${status} -gt 0 ] ; then |
---|
| 796 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[938] | 797 | cat /tmp/out_command.$$ |
---|
[810] | 798 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 799 | else |
---|
[938] | 800 | \rm /tmp/out_command.$$ |
---|
[810] | 801 | fi |
---|
| 802 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[428] | 803 | } |
---|
| 804 | |
---|
| 805 | #D-#================================================== |
---|
| 806 | #D-function IGCM_sys_Rm |
---|
| 807 | #D-* Purpose: generic rm |
---|
| 808 | #D-* Examples: |
---|
| 809 | #D- |
---|
| 810 | function IGCM_sys_Rm { |
---|
[810] | 811 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 812 | if ( $DEBUG_sys ) ; then |
---|
| 813 | echo "IGCM_sys_Rm :" $@ |
---|
| 814 | fi |
---|
[428] | 815 | |
---|
[810] | 816 | typeset status |
---|
[428] | 817 | |
---|
[938] | 818 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
| 819 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
[810] | 820 | status=$? |
---|
[428] | 821 | |
---|
[810] | 822 | if [ ${status} -gt 0 ] ; then |
---|
| 823 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[938] | 824 | cat /tmp/out_command.$$ |
---|
[810] | 825 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 826 | else |
---|
[938] | 827 | \rm /tmp/out_command.$$ |
---|
[810] | 828 | fi |
---|
| 829 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[428] | 830 | } |
---|
| 831 | |
---|
| 832 | #D-#================================================== |
---|
| 833 | #D-function IGCM_sys_RmRunDir |
---|
| 834 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 835 | #D- scheduler will do the job) |
---|
| 836 | #D-* Examples: |
---|
| 837 | #D- |
---|
| 838 | function IGCM_sys_RmRunDir { |
---|
[810] | 839 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 840 | if ( $DEBUG_sys ) ; then |
---|
| 841 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 842 | fi |
---|
[428] | 843 | |
---|
[810] | 844 | typeset status |
---|
[428] | 845 | |
---|
[938] | 846 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
| 847 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
[810] | 848 | status=$? |
---|
[428] | 849 | |
---|
[810] | 850 | if [ ${status} -gt 0 ] ; then |
---|
| 851 | echo "IGCM_sys_RmRunDir : rm error code is ${status}." |
---|
[938] | 852 | cat /tmp/out_command.$$ |
---|
[810] | 853 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 854 | else |
---|
[938] | 855 | \rm /tmp/out_command.$$ |
---|
[810] | 856 | fi |
---|
| 857 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[428] | 858 | } |
---|
| 859 | |
---|
| 860 | #D-#================================================== |
---|
| 861 | #D-function IGCM_sys_Mv |
---|
| 862 | #D-* Purpose: generic move |
---|
| 863 | #D-* Examples: |
---|
| 864 | #D- |
---|
| 865 | function IGCM_sys_Mv { |
---|
[810] | 866 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 867 | if ( $DEBUG_sys ) ; then |
---|
| 868 | echo "IGCM_sys_Mv :" $@ |
---|
| 869 | fi |
---|
[428] | 870 | |
---|
[810] | 871 | if [ $DRYRUN = 0 ]; then |
---|
[428] | 872 | |
---|
[810] | 873 | typeset status |
---|
[786] | 874 | |
---|
[938] | 875 | echo mv $@ > /tmp/out_command.$$ 2>&1 |
---|
| 876 | \mv $@ >> /tmp/out_command.$$ 2>&1 |
---|
[810] | 877 | status=$? |
---|
[786] | 878 | |
---|
[810] | 879 | if [ ${status} -gt 0 ] ; then |
---|
| 880 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[938] | 881 | cat /tmp/out_command.$$ |
---|
[810] | 882 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[428] | 883 | else |
---|
[938] | 884 | \rm /tmp/out_command.$$ |
---|
[428] | 885 | fi |
---|
[810] | 886 | fi |
---|
[428] | 887 | |
---|
[810] | 888 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[428] | 889 | } |
---|
| 890 | |
---|
| 891 | #D-#================================================== |
---|
| 892 | #D-function IGCM_sys_Put_Dir |
---|
| 893 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 894 | #D-* Examples: |
---|
| 895 | #D- |
---|
| 896 | function IGCM_sys_Put_Dir { |
---|
[810] | 897 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 898 | if ( $DEBUG_sys ) ; then |
---|
| 899 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 900 | fi |
---|
| 901 | if [ $DRYRUN = 0 ]; then |
---|
| 902 | if [ ! -d ${1} ] ; then |
---|
| 903 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 904 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 905 | return |
---|
[428] | 906 | fi |
---|
| 907 | |
---|
[810] | 908 | typeset status |
---|
[428] | 909 | |
---|
[810] | 910 | # Only if we use rsync |
---|
| 911 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 912 | # |
---|
| 913 | #USUAL WAY |
---|
[938] | 914 | \cp -r $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[810] | 915 | status=$? |
---|
[428] | 916 | |
---|
[810] | 917 | if [ ${status} -gt 0 ] ; then |
---|
| 918 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}" |
---|
[938] | 919 | cat /tmp/out_command.$$ |
---|
[810] | 920 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[428] | 921 | else |
---|
[938] | 922 | \rm /tmp/out_command.$$ |
---|
[428] | 923 | fi |
---|
[810] | 924 | fi |
---|
| 925 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[428] | 926 | } |
---|
| 927 | |
---|
| 928 | #D-#================================================== |
---|
| 929 | #D-function IGCM_sys_Get_Dir |
---|
[810] | 930 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[428] | 931 | #D-* Examples: |
---|
| 932 | #D- |
---|
| 933 | function IGCM_sys_Get_Dir { |
---|
[810] | 934 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 935 | if ( $DEBUG_sys ) ; then |
---|
| 936 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 937 | fi |
---|
| 938 | if [ $DRYRUN = 0 ]; then |
---|
| 939 | if [ ! -d ${1} ] ; then |
---|
| 940 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 941 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 942 | return |
---|
[428] | 943 | fi |
---|
| 944 | |
---|
[810] | 945 | typeset status |
---|
[428] | 946 | |
---|
[811] | 947 | #USUAL WAY |
---|
[938] | 948 | \cp -ur $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[810] | 949 | status=$? |
---|
[428] | 950 | |
---|
[810] | 951 | if [ ${status} -gt 0 ] ; then |
---|
| 952 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
[938] | 953 | cat /tmp/out_command.$$ |
---|
[810] | 954 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[428] | 955 | else |
---|
[938] | 956 | \rm /tmp/out_command.$$ |
---|
[428] | 957 | fi |
---|
[810] | 958 | fi |
---|
| 959 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[428] | 960 | } |
---|
| 961 | |
---|
| 962 | #D-#================================================== |
---|
| 963 | #D-function IGCM_sys_Get_Master |
---|
| 964 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 965 | #D-* Examples: |
---|
| 966 | #D- |
---|
| 967 | function IGCM_sys_Get_Master { |
---|
[810] | 968 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 969 | if ( $DEBUG_sys ) ; then |
---|
| 970 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 971 | fi |
---|
| 972 | if [ $DRYRUN = 0 ]; then |
---|
| 973 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
| 974 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 975 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 976 | return |
---|
[428] | 977 | fi |
---|
| 978 | |
---|
[810] | 979 | typeset NB_ESSAI DELAI status i |
---|
| 980 | # number of tentative |
---|
| 981 | NB_ESSAI=3 |
---|
| 982 | # time delay between tentative |
---|
| 983 | DELAI=2 |
---|
[428] | 984 | |
---|
[810] | 985 | i=0 |
---|
| 986 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 987 | \cp -urL $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[810] | 988 | status=$? |
---|
| 989 | if [ ${status} -gt 0 ]; then |
---|
| 990 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 991 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 992 | sleep $DELAI |
---|
| 993 | else |
---|
| 994 | break |
---|
| 995 | fi |
---|
| 996 | (( i = i + 1 )) |
---|
| 997 | done |
---|
[428] | 998 | |
---|
[810] | 999 | if [ ${status} -gt 0 ] ; then |
---|
| 1000 | echo "IGCM_sys_Get_Master : error." |
---|
[938] | 1001 | cat /tmp/out_command.$$ |
---|
[810] | 1002 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[428] | 1003 | else |
---|
[938] | 1004 | \rm /tmp/out_command.$$ |
---|
[428] | 1005 | fi |
---|
[810] | 1006 | fi |
---|
| 1007 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[428] | 1008 | } |
---|
| 1009 | |
---|
[810] | 1010 | #==================================================== |
---|
| 1011 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1012 | if ( $MirrorlibIGCM ) ; then |
---|
| 1013 | IGCM_sys_Mirror_libIGCM |
---|
| 1014 | fi |
---|
| 1015 | |
---|
[428] | 1016 | #D-#================================================== |
---|
| 1017 | #D-function IGCM_sys_Put_Rest |
---|
[810] | 1018 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[428] | 1019 | #D- File and target directory must exist. |
---|
| 1020 | #D-* Examples: |
---|
| 1021 | #D- |
---|
| 1022 | function IGCM_sys_Put_Rest { |
---|
[810] | 1023 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1024 | if ( $DEBUG_sys ) ; then |
---|
| 1025 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1026 | fi |
---|
| 1027 | if [ $DRYRUN = 0 ]; then |
---|
| 1028 | if [ ! -f ${1} ] ; then |
---|
| 1029 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1030 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[428] | 1031 | fi |
---|
| 1032 | |
---|
[810] | 1033 | typeset status |
---|
| 1034 | # |
---|
| 1035 | if [ X${JobType} = XRUN ] ; then |
---|
| 1036 | IGCM_sys_Chmod 444 ${1} |
---|
| 1037 | fi |
---|
| 1038 | # |
---|
| 1039 | # Only if we use rsync |
---|
| 1040 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1041 | # |
---|
| 1042 | #USUAL WAY |
---|
[938] | 1043 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1044 | status=$? |
---|
[428] | 1045 | |
---|
[810] | 1046 | if [ ${status} -gt 0 ] ; then |
---|
| 1047 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[938] | 1048 | cat /tmp/out_command.$$ |
---|
[810] | 1049 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[428] | 1050 | else |
---|
[938] | 1051 | \rm /tmp/out_command.$$ |
---|
[428] | 1052 | fi |
---|
[810] | 1053 | fi |
---|
| 1054 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[428] | 1055 | } |
---|
| 1056 | |
---|
| 1057 | #D-#================================================== |
---|
[810] | 1058 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1059 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1060 | #D- File and target directory must exist. |
---|
| 1061 | #D-* Examples: |
---|
| 1062 | #D- |
---|
| 1063 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1064 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1065 | if ( $DEBUG_sys ) ; then |
---|
| 1066 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1067 | fi |
---|
| 1068 | if [ $DRYRUN = 0 ]; then |
---|
| 1069 | if [ ! -f ${1} ] ; then |
---|
| 1070 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1071 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1072 | fi |
---|
| 1073 | |
---|
| 1074 | typeset status |
---|
| 1075 | # |
---|
| 1076 | if [ X${JobType} = XRUN ] ; then |
---|
| 1077 | IGCM_sys_Chmod 444 ${1} |
---|
| 1078 | fi |
---|
| 1079 | |
---|
| 1080 | # |
---|
| 1081 | # USUAL WAY |
---|
[938] | 1082 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1083 | status=$? |
---|
| 1084 | |
---|
| 1085 | if [ ${status} -gt 0 ] ; then |
---|
| 1086 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
| 1087 | [ -f ${2} ] && ls -l ${2} |
---|
| 1088 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1089 | cat /tmp/out_command.$$ |
---|
[810] | 1090 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1091 | else |
---|
[938] | 1092 | \rm /tmp/out_command.$$ |
---|
[810] | 1093 | fi |
---|
| 1094 | fi |
---|
| 1095 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1096 | } |
---|
| 1097 | |
---|
| 1098 | #D-#================================================== |
---|
[801] | 1099 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1100 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1101 | #D-* Examples: |
---|
| 1102 | #D- |
---|
| 1103 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1104 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
[918] | 1105 | |
---|
[801] | 1106 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1107 | } |
---|
| 1108 | |
---|
| 1109 | #D-#================================================== |
---|
[428] | 1110 | #D-function IGCM_sys_Put_Out |
---|
[810] | 1111 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[428] | 1112 | #D-* Examples: |
---|
| 1113 | #D- |
---|
| 1114 | function IGCM_sys_Put_Out { |
---|
[810] | 1115 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1116 | if ( $DEBUG_sys ) ; then |
---|
| 1117 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1118 | fi |
---|
| 1119 | |
---|
| 1120 | typeset status |
---|
| 1121 | |
---|
| 1122 | if [ $DRYRUN = 0 ]; then |
---|
| 1123 | if [ ! -f ${1} ] ; then |
---|
| 1124 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1125 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1126 | return 1 |
---|
[428] | 1127 | fi |
---|
[810] | 1128 | # |
---|
| 1129 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1130 | # |
---|
| 1131 | if [ X${JobType} = XRUN ] ; then |
---|
| 1132 | if [ X${3} = X ] ; then |
---|
| 1133 | IGCM_sys_Chmod 444 ${1} |
---|
[786] | 1134 | fi |
---|
[810] | 1135 | fi |
---|
| 1136 | # |
---|
| 1137 | #USUAL WAY |
---|
[938] | 1138 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1139 | status=$? |
---|
| 1140 | |
---|
| 1141 | if [ ${status} -gt 0 ] ; then |
---|
| 1142 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status}" |
---|
[938] | 1143 | cat /tmp/out_command.$$ |
---|
[810] | 1144 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 1145 | else |
---|
[938] | 1146 | \rm /tmp/out_command.$$ |
---|
[810] | 1147 | fi |
---|
| 1148 | fi |
---|
| 1149 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1150 | return 0 |
---|
| 1151 | } |
---|
| 1152 | |
---|
| 1153 | #D-#================================================== |
---|
| 1154 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1155 | #D-* Purpose: Copy a file on ${WORKDIR} after having chmod it in readonly |
---|
| 1156 | #D-* Examples: |
---|
| 1157 | #D- |
---|
| 1158 | function IGCM_sys_PutBuffer_Out { |
---|
| 1159 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1160 | if ( $DEBUG_sys ) ; then |
---|
| 1161 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1162 | fi |
---|
| 1163 | |
---|
| 1164 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1165 | |
---|
| 1166 | # number of tentative |
---|
| 1167 | NB_ESSAI=3 |
---|
| 1168 | # time delay between tentative |
---|
| 1169 | DELAI=2 |
---|
| 1170 | |
---|
| 1171 | if [ $DRYRUN = 0 ]; then |
---|
| 1172 | if [ ! -f ${1} ] ; then |
---|
| 1173 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1174 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1175 | return 1 |
---|
| 1176 | fi |
---|
| 1177 | # |
---|
| 1178 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1179 | # |
---|
| 1180 | |
---|
| 1181 | exist=false |
---|
| 1182 | skip=false |
---|
| 1183 | if [ -f $2 ] ; then |
---|
| 1184 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1185 | exist=true |
---|
| 1186 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1187 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1188 | status=0 |
---|
| 1189 | skip=true |
---|
| 1190 | else |
---|
| 1191 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1192 | skip=false |
---|
| 1193 | fi |
---|
| 1194 | fi |
---|
| 1195 | # |
---|
| 1196 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1197 | IGCM_sys_Chmod u+w $2 |
---|
| 1198 | fi |
---|
| 1199 | |
---|
| 1200 | if [ X${skip} = Xfalse ] ; then |
---|
| 1201 | i=0 |
---|
| 1202 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1203 | # USUAL WAY |
---|
[938] | 1204 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1205 | status=$? |
---|
| 1206 | if [ ${status} -gt 0 ]; then |
---|
| 1207 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1208 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 1209 | [ -f ${2} ] && ls -l ${2} |
---|
| 1210 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
| 1211 | sleep $DELAI |
---|
| 1212 | else |
---|
| 1213 | break |
---|
| 1214 | fi |
---|
| 1215 | (( i = i + 1 )) |
---|
| 1216 | done |
---|
| 1217 | fi |
---|
| 1218 | |
---|
| 1219 | if [ ${status} -gt 0 ] ; then |
---|
| 1220 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1221 | [ -f ${2} ] && ls -l ${2} |
---|
| 1222 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1223 | cat /tmp/out_command.$$ |
---|
[810] | 1224 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1225 | else |
---|
| 1226 | |
---|
[786] | 1227 | if [ X${JobType} = XRUN ] ; then |
---|
[810] | 1228 | if [ X${3} = X ] ; then |
---|
| 1229 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1230 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1231 | fi |
---|
[786] | 1232 | fi |
---|
[428] | 1233 | |
---|
[938] | 1234 | \rm /tmp/out_command.$$ |
---|
[428] | 1235 | fi |
---|
[810] | 1236 | fi |
---|
| 1237 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1238 | return 0 |
---|
[428] | 1239 | } |
---|
| 1240 | |
---|
| 1241 | #D-#================================================== |
---|
| 1242 | #D-function IGCM_sys_Get |
---|
| 1243 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1244 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1245 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1246 | function IGCM_sys_Get { |
---|
[810] | 1247 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[428] | 1248 | |
---|
[810] | 1249 | typeset DEST status dm_liste |
---|
[428] | 1250 | |
---|
[810] | 1251 | if ( $DEBUG_sys ) ; then |
---|
| 1252 | echo "IGCM_sys_Get :" $@ |
---|
| 1253 | fi |
---|
| 1254 | if [ $DRYRUN -le 2 ]; then |
---|
| 1255 | if [ X${1} = X'/l' ] ; then |
---|
| 1256 | eval set +A dm_liste \${${2}} |
---|
| 1257 | else |
---|
| 1258 | dm_liste=${1} |
---|
[428] | 1259 | fi |
---|
[810] | 1260 | eval DEST=\${${#}} |
---|
[428] | 1261 | |
---|
[810] | 1262 | # test if the (first) file is present in the old computation : |
---|
| 1263 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
| 1264 | if [ $? = 0 ] ; then |
---|
[786] | 1265 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
[810] | 1266 | status=$? |
---|
| 1267 | else |
---|
| 1268 | IGCM_sys_TestFileBuffer ${dm_liste[0]} |
---|
| 1269 | status=$? |
---|
| 1270 | fi |
---|
[428] | 1271 | |
---|
[810] | 1272 | if [ ${status} -gt 0 ] ; then |
---|
| 1273 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1274 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1275 | return |
---|
| 1276 | fi |
---|
[428] | 1277 | |
---|
[810] | 1278 | #USUAL WAY |
---|
[938] | 1279 | \cp ${dm_liste[*]} ${DEST} > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1280 | status=$? |
---|
| 1281 | |
---|
| 1282 | if [ ${status} -gt 0 ] ; then |
---|
| 1283 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status}" |
---|
[938] | 1284 | cat /tmp/out_command.$$ |
---|
[810] | 1285 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1286 | else |
---|
[938] | 1287 | \rm /tmp/out_command.$$ |
---|
[810] | 1288 | fi |
---|
| 1289 | fi |
---|
| 1290 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1291 | } |
---|
| 1292 | |
---|
| 1293 | #D-#================================================== |
---|
| 1294 | #D-function IGCM_sys_GetBuffer |
---|
| 1295 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1296 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1297 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1298 | function IGCM_sys_GetBuffer { |
---|
| 1299 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1300 | |
---|
| 1301 | typeset DEST buf_liste target file_work |
---|
| 1302 | typeset NB_ESSAI DELAI status i |
---|
| 1303 | |
---|
| 1304 | if ( $DEBUG_sys ) ; then |
---|
| 1305 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1306 | fi |
---|
| 1307 | |
---|
| 1308 | # number of tentative |
---|
| 1309 | NB_ESSAI=3 |
---|
| 1310 | # time delay between tentative |
---|
| 1311 | DELAI=2 |
---|
| 1312 | |
---|
| 1313 | if [ $DRYRUN -le 2 ]; then |
---|
| 1314 | if [ X${1} = X'/l' ] ; then |
---|
| 1315 | eval set +A buf_liste \${${2}} |
---|
| 1316 | else |
---|
| 1317 | eval set +A buf_liste ${1} |
---|
| 1318 | fi |
---|
| 1319 | eval DEST=\${${#}} |
---|
| 1320 | |
---|
| 1321 | #USUAL WAY |
---|
| 1322 | if [ X${1} = X'/l' ] ; then |
---|
| 1323 | for target in ${buf_liste[*]} ; do |
---|
| 1324 | local_file=$( basename ${target} ) |
---|
| 1325 | i=0 |
---|
| 1326 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1327 | \cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
[810] | 1328 | status=$? |
---|
| 1329 | if [ ${status} -gt 0 ]; then |
---|
| 1330 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1331 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1332 | sleep $DELAI |
---|
| 1333 | else |
---|
| 1334 | break |
---|
| 1335 | fi |
---|
| 1336 | (( i = i + 1 )) |
---|
| 1337 | done |
---|
| 1338 | if [ ${status} -gt 0 ] ; then |
---|
| 1339 | echo "IGCM_sys_Get : error" |
---|
[938] | 1340 | cat /tmp/out_command.$$ |
---|
| 1341 | \rm /tmp/out_command.$$ |
---|
[810] | 1342 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1343 | else |
---|
[938] | 1344 | \rm /tmp/out_command.$$ |
---|
[810] | 1345 | fi |
---|
| 1346 | done |
---|
| 1347 | else |
---|
| 1348 | i=0 |
---|
| 1349 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1350 | \cp ${buf_liste} ${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[810] | 1351 | status=$? |
---|
| 1352 | if [ ${status} -gt 0 ]; then |
---|
| 1353 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1354 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1355 | sleep $DELAI |
---|
| 1356 | else |
---|
| 1357 | break |
---|
| 1358 | fi |
---|
| 1359 | (( i = i + 1 )) |
---|
| 1360 | done |
---|
| 1361 | if [ ${status} -gt 0 ] ; then |
---|
| 1362 | echo "IGCM_sys_Get : error" |
---|
[938] | 1363 | cat /tmp/out_command.$$ |
---|
| 1364 | \rm /tmp/out_command.$$ |
---|
[810] | 1365 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1366 | else |
---|
[938] | 1367 | \rm /tmp/out_command.$$ |
---|
[786] | 1368 | fi |
---|
[428] | 1369 | fi |
---|
[810] | 1370 | fi |
---|
| 1371 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
[428] | 1372 | } |
---|
| 1373 | |
---|
| 1374 | #D-#================================================== |
---|
| 1375 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1376 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1377 | #D-* Examples: |
---|
| 1378 | #D- |
---|
| 1379 | function IGCM_sys_GetDate_FichWork { |
---|
[810] | 1380 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1381 | if ( $DEBUG_sys ) ; then |
---|
| 1382 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1383 | fi |
---|
| 1384 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1385 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[428] | 1386 | } |
---|
| 1387 | |
---|
| 1388 | #D-#================================================== |
---|
| 1389 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[809] | 1390 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[428] | 1391 | #D-* Examples: |
---|
| 1392 | #D- |
---|
| 1393 | function IGCM_sys_GetDate_FichArchive { |
---|
[810] | 1394 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1395 | if ( $DEBUG_sys ) ; then |
---|
| 1396 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1397 | fi |
---|
| 1398 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
[428] | 1399 | } |
---|
| 1400 | |
---|
[810] | 1401 | #D-#================================================== |
---|
[811] | 1402 | #D-function IGCM_sys_Dods_Rm |
---|
| 1403 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1404 | #D-* Examples: |
---|
| 1405 | #D- |
---|
| 1406 | function IGCM_sys_Dods_Rm { |
---|
| 1407 | if ( $DEBUG_sys ) ; then |
---|
| 1408 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1409 | fi |
---|
| 1410 | return 0 |
---|
| 1411 | } |
---|
| 1412 | |
---|
| 1413 | #D-#================================================== |
---|
| 1414 | #D-function IGCM_sys_Dods_Cp |
---|
| 1415 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1416 | #D-* Examples: |
---|
| 1417 | #D- |
---|
| 1418 | function IGCM_sys_Dods_Cp { |
---|
| 1419 | if ( $DEBUG_sys ) ; then |
---|
| 1420 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1421 | fi |
---|
| 1422 | return 0 |
---|
| 1423 | } |
---|
| 1424 | |
---|
| 1425 | #D-#================================================== |
---|
[810] | 1426 | #D-function IGCM_sys_Put_Dods |
---|
| 1427 | #D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. Dummy function here |
---|
| 1428 | #D-* Examples: |
---|
| 1429 | #D- |
---|
| 1430 | function IGCM_sys_Put_Dods { |
---|
| 1431 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1432 | if ( $DEBUG_sys ) ; then |
---|
| 1433 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1434 | fi |
---|
| 1435 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1436 | } |
---|
| 1437 | |
---|
[428] | 1438 | ############################################################## |
---|
| 1439 | # REBUILD OPERATOR |
---|
| 1440 | |
---|
[810] | 1441 | #D-#================================================== |
---|
| 1442 | #D-function IGCM_sys_rebuild |
---|
| 1443 | #D-* Purpose: rebuild parallel files |
---|
| 1444 | #D-* Examples: |
---|
| 1445 | #D- |
---|
[428] | 1446 | function IGCM_sys_rebuild { |
---|
[810] | 1447 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1448 | if ( $DEBUG_sys ) ; then |
---|
| 1449 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1450 | fi |
---|
| 1451 | |
---|
| 1452 | typeset NB_ESSAI DELAI status i firstArg |
---|
| 1453 | # number of tentative |
---|
| 1454 | NB_ESSAI=3 |
---|
| 1455 | # time delay between tentative |
---|
| 1456 | DELAI=2 |
---|
| 1457 | |
---|
| 1458 | i=0 |
---|
| 1459 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1460 | /gpfs1/home/sebastien/REBUILD/rebuild -f -o $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1461 | status=$? |
---|
| 1462 | if [ ${status} -gt 0 ] ; then |
---|
| 1463 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
[938] | 1464 | cat /tmp/out_command.$$ |
---|
| 1465 | \rm /tmp/out_command.$$ |
---|
[810] | 1466 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1467 | firstArg=${1} |
---|
| 1468 | \rm ${firstArg} |
---|
| 1469 | sleep $DELAI |
---|
| 1470 | else |
---|
[938] | 1471 | \rm /tmp/out_command.$$ |
---|
[810] | 1472 | break |
---|
[428] | 1473 | fi |
---|
[810] | 1474 | (( i = i + 1 )) |
---|
| 1475 | done |
---|
[428] | 1476 | |
---|
[810] | 1477 | if [ ${status} -gt 0 ] ; then |
---|
| 1478 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
| 1479 | IGCM_debug_Exit "rebuild" |
---|
| 1480 | fi |
---|
| 1481 | |
---|
| 1482 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[428] | 1483 | } |
---|
| 1484 | |
---|
[810] | 1485 | #D-#================================================== |
---|
| 1486 | #D-function IGCM_sys_rebuild_station |
---|
[922] | 1487 | #D-* Purpose: rebuild parallel files describing station |
---|
[810] | 1488 | #D-* Examples: |
---|
| 1489 | #D- |
---|
| 1490 | function IGCM_sys_rebuild_station { |
---|
| 1491 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1492 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1493 | if ( $DEBUG_sys ) ; then |
---|
| 1494 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1495 | fi |
---|
| 1496 | list_opt=$@ |
---|
| 1497 | |
---|
| 1498 | # Invert Axis : t,x -> x,t |
---|
| 1499 | # t,pres,x -> x,t,pres |
---|
| 1500 | # So that we can concatenate along x |
---|
| 1501 | i=0 |
---|
| 1502 | for file_in in ${list_opt} ; do |
---|
| 1503 | (( i = i + 1)) |
---|
| 1504 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1505 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1506 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1507 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1508 | done |
---|
| 1509 | |
---|
| 1510 | # Concatenate |
---|
| 1511 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1512 | |
---|
| 1513 | # Re-ivert file |
---|
| 1514 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1515 | |
---|
[922] | 1516 | # Station re-ordering is too expansive to be run within libIGCM |
---|
[810] | 1517 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1518 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1519 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1520 | # BEGIN reordering |
---|
| 1521 | |
---|
| 1522 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1523 | # We isolate this in the code below: |
---|
| 1524 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1525 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1526 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1527 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1528 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1529 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1530 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1531 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1532 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1533 | # typeset -Z4 j4 |
---|
| 1534 | # typeset -Z3 j3 |
---|
| 1535 | |
---|
| 1536 | # unset list_opt |
---|
| 1537 | # set +A list_opt $@ |
---|
| 1538 | |
---|
| 1539 | # Filename after rebuild |
---|
| 1540 | # file_out=${list_opt[0]} |
---|
| 1541 | # Prefix of output files |
---|
| 1542 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1543 | # Number of procs |
---|
| 1544 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1545 | |
---|
| 1546 | # iProc=0 |
---|
| 1547 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1548 | # Array containing Station as a number |
---|
| 1549 | # unset proc_stn |
---|
[912] | 1550 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | gawk ' {print $2}' ) |
---|
[810] | 1551 | # Number of stations produced by processor proc |
---|
| 1552 | # stationLast=${#proc_stn[*]} |
---|
| 1553 | # Proc number on 4 digits |
---|
| 1554 | # j4=${iProc} |
---|
| 1555 | # Init |
---|
| 1556 | # iStation=0 |
---|
| 1557 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1558 | # Station number on 3 digits |
---|
| 1559 | # j3=${proc_stn[${iStation}]} |
---|
| 1560 | # Extract station |
---|
| 1561 | # Invert Axis : t,x -> x,t |
---|
| 1562 | # t,pres,x -> x,t,pres |
---|
| 1563 | # So that we can concatenate along x |
---|
| 1564 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1565 | # (( iStation = iStation + 1 )) |
---|
| 1566 | # done |
---|
| 1567 | # (( iProc = iProc + 1 )) |
---|
| 1568 | # done |
---|
| 1569 | |
---|
| 1570 | # Concatenate all station along x |
---|
| 1571 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1572 | |
---|
| 1573 | # Re-invert file |
---|
| 1574 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1575 | |
---|
| 1576 | # END reordering |
---|
| 1577 | |
---|
| 1578 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1579 | } |
---|
| 1580 | |
---|
[428] | 1581 | ############################################################ |
---|
| 1582 | # Activate Running Environnment Variables |
---|
| 1583 | |
---|
[810] | 1584 | #D-#================================================== |
---|
| 1585 | #D-function IGCM_sys_desactiv_variables |
---|
| 1586 | #D-* Purpose: set environement variables prior to execution |
---|
| 1587 | #D-* Examples: |
---|
| 1588 | #D- |
---|
[428] | 1589 | function IGCM_sys_activ_variables { |
---|
[810] | 1590 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1591 | if ( $DEBUG_sys ) ; then |
---|
[811] | 1592 | echo "IGCM_sys_activ_variables" |
---|
[810] | 1593 | fi |
---|
[428] | 1594 | |
---|
| 1595 | # -------------------------------------------------------------------- |
---|
| 1596 | #D- MPI specifications |
---|
| 1597 | # -------------------------------------------------------------------- |
---|
| 1598 | |
---|
| 1599 | # -------------------------------------------------------------------- |
---|
| 1600 | #D- Other specifications |
---|
| 1601 | # -------------------------------------------------------------------- |
---|
| 1602 | |
---|
[810] | 1603 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[428] | 1604 | } |
---|
| 1605 | |
---|
| 1606 | ############################################################ |
---|
| 1607 | # Desactivate Running Environnment Variables |
---|
| 1608 | |
---|
[810] | 1609 | #D-#================================================== |
---|
| 1610 | #D-function IGCM_sys_desactiv_variables |
---|
| 1611 | #D-* Purpose: unset environement variables after execution |
---|
| 1612 | #D-* Examples: |
---|
| 1613 | #D- |
---|
[428] | 1614 | function IGCM_sys_desactiv_variables { |
---|
[810] | 1615 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1616 | if ( $DEBUG_sys ) ; then |
---|
[811] | 1617 | echo "IGCM_sys_desactiv_variables" |
---|
[810] | 1618 | fi |
---|
[428] | 1619 | # -------------------------------------------------------------------- |
---|
| 1620 | #D- MPI specifications |
---|
| 1621 | # -------------------------------------------------------------------- |
---|
| 1622 | |
---|
| 1623 | # -------------------------------------------------------------------- |
---|
| 1624 | #D- Other specifications |
---|
| 1625 | # -------------------------------------------------------------------- |
---|
| 1626 | |
---|
[810] | 1627 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1628 | } |
---|
[809] | 1629 | |
---|
[810] | 1630 | ############################################################ |
---|
| 1631 | # Build MPI/OMP scripts run file (dummy function) |
---|
| 1632 | |
---|
| 1633 | #D-#================================================== |
---|
| 1634 | #D-function IGCM_sys_build_run_file |
---|
| 1635 | #D-* Purpose: build run file (deprecated) |
---|
| 1636 | #D-* Examples: |
---|
| 1637 | #D- |
---|
| 1638 | function IGCM_sys_build_run_file { |
---|
| 1639 | |
---|
[811] | 1640 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[810] | 1641 | |
---|
[428] | 1642 | } |
---|
| 1643 | |
---|
| 1644 | ############################################################ |
---|
[810] | 1645 | # Build MPI/OMP scripts |
---|
[428] | 1646 | |
---|
[810] | 1647 | #D-#================================================== |
---|
| 1648 | #D-function IGCM_sys_build_execution_scripts |
---|
| 1649 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
| 1650 | #D-* Examples: |
---|
| 1651 | #D- |
---|
| 1652 | function IGCM_sys_build_execution_scripts |
---|
| 1653 | { |
---|
| 1654 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1655 | if ( $DEBUG_sys ) ; then |
---|
| 1656 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1657 | fi |
---|
| 1658 | |
---|
| 1659 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
| 1660 | |
---|
| 1661 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
| 1662 | IGCM_debug_Exit "IGCM_sys_iitm build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
| 1663 | fi |
---|
| 1664 | |
---|
| 1665 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1666 | |
---|
| 1667 | if [ -f run_file ] ; then |
---|
| 1668 | IGCM_sys_Rm -f run_file |
---|
| 1669 | fi |
---|
| 1670 | touch run_file |
---|
| 1671 | |
---|
| 1672 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1673 | # NEW : 2 Noeuds |
---|
| 1674 | # @ task_geometry={(0)(1,2,3)} |
---|
| 1675 | # Nombre de processus demandes |
---|
| 1676 | echo "Job_${config_UserChoices_JobName} includes task_geometry = \c" |
---|
| 1677 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" |
---|
| 1678 | echo "Job_${config_UserChoices_JobName} includes task_geometry with NbNodes = \c" |
---|
| 1679 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c |
---|
| 1680 | NbNodes_Job=$(( $( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c ) - 1 )) |
---|
| 1681 | |
---|
| 1682 | if [ ${NbNodes_Job} -eq 0 ] ; then |
---|
| 1683 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no task_geometry defined with OpenMP run." |
---|
| 1684 | exit 1 |
---|
| 1685 | fi |
---|
| 1686 | else |
---|
| 1687 | |
---|
| 1688 | # OLD : |
---|
| 1689 | # @ total_tasks = 3 |
---|
| 1690 | # @ environment = "BATCH_NUM_PROC_TOT=3" |
---|
| 1691 | # Pas d OpenMP |
---|
| 1692 | # @ resources = ConsumableCpus(1) |
---|
| 1693 | |
---|
| 1694 | echo "Job_${config_UserChoices_JobName} includes total_tasks = \c" |
---|
| 1695 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" |
---|
| 1696 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" ) |
---|
| 1697 | NbProc_Job=${NbProc_Job:=0} |
---|
| 1698 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
| 1699 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no total_tasks defined with MPI only run." |
---|
| 1700 | exit 1 |
---|
| 1701 | fi |
---|
| 1702 | if ( $( egrep '^# *@ *resources *= *ConsumableCpus\(1\)' ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} >/dev/null 2>&1 ) ) ; then |
---|
| 1703 | IGCM_debug_Print 2 "ressources = ConsumableCpus(1) line found into Job_${config_UserChoices_JobName}" |
---|
| 1704 | else |
---|
| 1705 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources = line not found. Job should include resources = ConsumableCpus(1) " |
---|
| 1706 | exit 1 |
---|
| 1707 | fi |
---|
| 1708 | fi |
---|
| 1709 | |
---|
| 1710 | # run_file construction |
---|
| 1711 | |
---|
| 1712 | # Then first loop on the components for the coupler ie oasis |
---|
| 1713 | |
---|
| 1714 | ### the coupler ie oasis must be the first one |
---|
| 1715 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1716 | |
---|
| 1717 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1718 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1719 | |
---|
| 1720 | # for CPL component only |
---|
| 1721 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1722 | |
---|
| 1723 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1724 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1725 | |
---|
| 1726 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1727 | |
---|
| 1728 | (( mpi_count = 1 )) |
---|
| 1729 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1730 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1731 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
| 1732 | else |
---|
| 1733 | echo "./${ExeNameOut}" >> run_file |
---|
| 1734 | fi |
---|
| 1735 | (( mpi_count = mpi_count + 1 )) |
---|
| 1736 | done |
---|
| 1737 | else |
---|
| 1738 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1739 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
| 1740 | else |
---|
| 1741 | echo "./${ExeNameOut} " >> run_file |
---|
| 1742 | fi |
---|
| 1743 | fi |
---|
| 1744 | fi |
---|
| 1745 | done |
---|
| 1746 | |
---|
| 1747 | # Then second loop on the components |
---|
| 1748 | |
---|
| 1749 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1750 | |
---|
| 1751 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1752 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1753 | |
---|
| 1754 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1755 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1756 | |
---|
| 1757 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1758 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1759 | |
---|
| 1760 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1761 | |
---|
| 1762 | (( mpi_count = 1 )) |
---|
| 1763 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1764 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1765 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
| 1766 | else |
---|
| 1767 | echo "./${ExeNameOut}" >> run_file |
---|
| 1768 | fi |
---|
| 1769 | (( mpi_count = mpi_count + 1 )) |
---|
| 1770 | done |
---|
| 1771 | else |
---|
| 1772 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1773 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
| 1774 | else |
---|
| 1775 | # to be tested : no MPI only OpenMP into MPMD mode |
---|
| 1776 | echo "./${ExeNameOut} " >> run_file |
---|
| 1777 | fi |
---|
| 1778 | fi |
---|
| 1779 | fi |
---|
| 1780 | done |
---|
| 1781 | |
---|
| 1782 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
| 1783 | |
---|
| 1784 | IGCM_sys_Chmod u+x run_file |
---|
[428] | 1785 | if ( $DEBUG_sys ) ; then |
---|
[810] | 1786 | echo "run_file contains : " |
---|
| 1787 | cat run_file |
---|
[428] | 1788 | fi |
---|
| 1789 | |
---|
[810] | 1790 | else # Only one executable. launch it. |
---|
[428] | 1791 | |
---|
[810] | 1792 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[428] | 1793 | |
---|
[810] | 1794 | # Only if we really have an executable for the component : |
---|
| 1795 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1796 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
| 1797 | EXECUTION="${HOST_MPIRUN_COMMAND} ./${ExeNameOut}" |
---|
| 1798 | fi |
---|
[786] | 1799 | |
---|
[810] | 1800 | done |
---|
[428] | 1801 | |
---|
[810] | 1802 | fi |
---|
[428] | 1803 | |
---|
[811] | 1804 | IGCM_debug_Print 1 "sys iitm : execution command is" |
---|
[810] | 1805 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[428] | 1806 | |
---|
[810] | 1807 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[428] | 1808 | } |
---|
[651] | 1809 | |
---|
[933] | 1810 | #D-#================================================== |
---|
| 1811 | #D-function IGCM_sys_check_path |
---|
| 1812 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
| 1813 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
| 1814 | #D-* Examples: |
---|
| 1815 | #D- |
---|
| 1816 | function IGCM_sys_check_path { |
---|
| 1817 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
| 1818 | if ( $DEBUG_sys ) ; then |
---|
| 1819 | echo "IGCM_sys_check_path" |
---|
| 1820 | fi |
---|
[810] | 1821 | |
---|
[933] | 1822 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${ARCHIVE} ] ) ; then |
---|
| 1823 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
| 1824 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
[936] | 1825 | IGCM_debug_Exit "This will stop the job" |
---|
[933] | 1826 | fi |
---|
| 1827 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
| 1828 | } |
---|
| 1829 | |
---|
[810] | 1830 | #D-#================================================== |
---|
| 1831 | #D-function IGCM_sys_check_quota. Dummy call here |
---|
| 1832 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
| 1833 | #D-* Examples: |
---|
| 1834 | #D- |
---|
[651] | 1835 | function IGCM_sys_check_quota { |
---|
[810] | 1836 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1837 | if ( $DEBUG_sys ) ; then |
---|
| 1838 | echo "IGCM_sys_check_quota" |
---|
| 1839 | fi |
---|
| 1840 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1841 | } |
---|
| 1842 | |
---|
| 1843 | #D-#================================================== |
---|
| 1844 | #D-function IGCM_sys_CountJobInQueue |
---|
| 1845 | #D-* Purpose: Check if job_name is currently |
---|
| 1846 | #D- running or in queue |
---|
| 1847 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 1848 | #D- |
---|
| 1849 | function IGCM_sys_CountJobInQueue { |
---|
| 1850 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 1851 | if ( $DEBUG_sys ) ; then |
---|
| 1852 | echo "IGCM_sys_CountJobInQueue" |
---|
| 1853 | fi |
---|
| 1854 | |
---|
| 1855 | # Print only the full (-W) JobName (%jn) |
---|
| 1856 | NbRun=$( llq -W -f %jn | grep -c "$1" ) |
---|
| 1857 | |
---|
| 1858 | eval ${2}=${NbRun} |
---|
| 1859 | |
---|
| 1860 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 1861 | } |
---|
| 1862 | |
---|
| 1863 | ############################################################## |
---|
| 1864 | # NCO OPERATOR |
---|
| 1865 | |
---|
| 1866 | #D-#================================================== |
---|
| 1867 | #D-function IGCM_sys_ncap2 |
---|
| 1868 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
| 1869 | #D-* Examples: |
---|
| 1870 | #D- |
---|
| 1871 | function IGCM_sys_ncap2 { |
---|
| 1872 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1873 | if ( $DEBUG_sys ) ; then |
---|
| 1874 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1875 | fi |
---|
| 1876 | |
---|
| 1877 | typeset NB_ESSAI DELAI status i |
---|
| 1878 | # number of tentative |
---|
| 1879 | NB_ESSAI=3 |
---|
| 1880 | # time delay between tentative |
---|
| 1881 | DELAI=2 |
---|
| 1882 | |
---|
| 1883 | i=0 |
---|
| 1884 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1885 | ncap2 "$@" > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1886 | status=$? |
---|
| 1887 | if [ ${status} -gt 0 ] ; then |
---|
| 1888 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
[938] | 1889 | cat /tmp/out_command.$$ |
---|
| 1890 | \rm /tmp/out_command.$$ |
---|
[810] | 1891 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1892 | sleep $DELAI |
---|
| 1893 | else |
---|
[938] | 1894 | \rm /tmp/out_command.$$ |
---|
[810] | 1895 | break |
---|
[651] | 1896 | fi |
---|
[810] | 1897 | (( i = i + 1 )) |
---|
| 1898 | done |
---|
| 1899 | |
---|
| 1900 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 1901 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 1902 | IGCM_debug_Exit "ncap2" |
---|
[810] | 1903 | fi |
---|
| 1904 | |
---|
| 1905 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
[651] | 1906 | } |
---|
[810] | 1907 | |
---|
| 1908 | #D-#================================================== |
---|
| 1909 | #D-function IGCM_sys_ncatted |
---|
| 1910 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
| 1911 | #D-* Examples: |
---|
| 1912 | #D- |
---|
| 1913 | function IGCM_sys_ncatted { |
---|
| 1914 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1915 | if ( $DEBUG_sys ) ; then |
---|
| 1916 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1917 | fi |
---|
| 1918 | |
---|
| 1919 | typeset NB_ESSAI DELAI status i |
---|
| 1920 | # number of tentative |
---|
| 1921 | NB_ESSAI=3 |
---|
| 1922 | # time delay between tentative |
---|
| 1923 | DELAI=2 |
---|
| 1924 | |
---|
| 1925 | i=0 |
---|
| 1926 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1927 | ncatted "$@" > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1928 | status=$? |
---|
| 1929 | if [ ${status} -gt 0 ] ; then |
---|
| 1930 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
[938] | 1931 | cat /tmp/out_command.$$ |
---|
| 1932 | \rm /tmp/out_command.$$ |
---|
[810] | 1933 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1934 | sleep $DELAI |
---|
| 1935 | else |
---|
[938] | 1936 | \rm /tmp/out_command.$$ |
---|
[810] | 1937 | break |
---|
| 1938 | fi |
---|
| 1939 | (( i = i + 1 )) |
---|
| 1940 | done |
---|
| 1941 | |
---|
| 1942 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 1943 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 1944 | IGCM_debug_Exit "ncatted" |
---|
[810] | 1945 | fi |
---|
| 1946 | |
---|
| 1947 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
| 1948 | } |
---|
| 1949 | |
---|
| 1950 | #D-#================================================== |
---|
| 1951 | #D-function IGCM_sys_ncbo |
---|
| 1952 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
| 1953 | #D-* Examples: |
---|
| 1954 | #D- |
---|
| 1955 | function IGCM_sys_ncbo { |
---|
| 1956 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1957 | if ( $DEBUG_sys ) ; then |
---|
| 1958 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1959 | fi |
---|
| 1960 | |
---|
| 1961 | typeset NB_ESSAI DELAI status i |
---|
| 1962 | # number of tentative |
---|
| 1963 | NB_ESSAI=3 |
---|
| 1964 | # time delay between tentative |
---|
| 1965 | DELAI=2 |
---|
| 1966 | |
---|
| 1967 | i=0 |
---|
| 1968 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1969 | ncbo $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 1970 | status=$? |
---|
| 1971 | if [ ${status} -gt 0 ] ; then |
---|
| 1972 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
[938] | 1973 | cat /tmp/out_command.$$ |
---|
| 1974 | \rm /tmp/out_command.$$ |
---|
[810] | 1975 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1976 | sleep $DELAI |
---|
| 1977 | else |
---|
[938] | 1978 | \rm /tmp/out_command.$$ |
---|
[810] | 1979 | break |
---|
| 1980 | fi |
---|
| 1981 | (( i = i + 1 )) |
---|
| 1982 | done |
---|
| 1983 | |
---|
| 1984 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 1985 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 1986 | IGCM_debug_Exit "ncbo" |
---|
[810] | 1987 | fi |
---|
| 1988 | |
---|
| 1989 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
| 1990 | } |
---|
| 1991 | |
---|
| 1992 | #D-#================================================== |
---|
| 1993 | #D-function IGCM_sys_ncdif |
---|
| 1994 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
| 1995 | #D-* Examples: |
---|
| 1996 | #D- |
---|
| 1997 | function IGCM_sys_ncdiff { |
---|
| 1998 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1999 | if ( $DEBUG_sys ) ; then |
---|
| 2000 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 2001 | fi |
---|
| 2002 | |
---|
| 2003 | typeset NB_ESSAI DELAI status i |
---|
| 2004 | # number of tentative |
---|
| 2005 | NB_ESSAI=3 |
---|
| 2006 | # time delay between tentative |
---|
| 2007 | DELAI=2 |
---|
| 2008 | |
---|
| 2009 | i=0 |
---|
| 2010 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2011 | ncdiff $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2012 | status=$? |
---|
| 2013 | if [ ${status} -gt 0 ] ; then |
---|
| 2014 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
[938] | 2015 | cat /tmp/out_command.$$ |
---|
| 2016 | \rm /tmp/out_command.$$ |
---|
[810] | 2017 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2018 | sleep $DELAI |
---|
| 2019 | else |
---|
[938] | 2020 | \rm /tmp/out_command.$$ |
---|
[810] | 2021 | break |
---|
| 2022 | fi |
---|
| 2023 | (( i = i + 1 )) |
---|
| 2024 | done |
---|
| 2025 | |
---|
| 2026 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2027 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 2028 | IGCM_debug_Exit "ncdiff" |
---|
[810] | 2029 | fi |
---|
| 2030 | |
---|
| 2031 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
| 2032 | } |
---|
| 2033 | |
---|
| 2034 | #D-#================================================== |
---|
| 2035 | #D-function IGCM_sys_ncea |
---|
| 2036 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
| 2037 | #D-* Examples: |
---|
| 2038 | #D- |
---|
| 2039 | function IGCM_sys_ncea { |
---|
| 2040 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 2041 | if ( $DEBUG_sys ) ; then |
---|
| 2042 | echo "IGCM_sys_ncea :" $@ |
---|
| 2043 | fi |
---|
| 2044 | |
---|
| 2045 | typeset NB_ESSAI DELAI status i |
---|
| 2046 | # number of tentative |
---|
| 2047 | NB_ESSAI=3 |
---|
| 2048 | # time delay between tentative |
---|
| 2049 | DELAI=2 |
---|
| 2050 | |
---|
| 2051 | i=0 |
---|
| 2052 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2053 | ncea $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2054 | status=$? |
---|
| 2055 | if [ ${status} -gt 0 ] ; then |
---|
| 2056 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
[938] | 2057 | cat /tmp/out_command.$$ |
---|
| 2058 | \rm /tmp/out_command.$$ |
---|
[810] | 2059 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2060 | sleep $DELAI |
---|
| 2061 | else |
---|
[938] | 2062 | \rm /tmp/out_command.$$ |
---|
[810] | 2063 | break |
---|
| 2064 | fi |
---|
| 2065 | (( i = i + 1 )) |
---|
| 2066 | done |
---|
| 2067 | |
---|
| 2068 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2069 | echo "IGCM_sys_ncea : ncea error" |
---|
| 2070 | IGCM_debug_Exit "ncea" |
---|
[810] | 2071 | fi |
---|
| 2072 | |
---|
| 2073 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
| 2074 | } |
---|
| 2075 | |
---|
| 2076 | #D-#================================================== |
---|
| 2077 | #D-function IGCM_sys_ncecat |
---|
| 2078 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
| 2079 | #D-* Examples: |
---|
| 2080 | #D- |
---|
| 2081 | function IGCM_sys_ncecat { |
---|
| 2082 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 2083 | if ( $DEBUG_sys ) ; then |
---|
| 2084 | echo "IGCM_sys_ncecat :" $@ |
---|
| 2085 | fi |
---|
| 2086 | |
---|
| 2087 | typeset NB_ESSAI DELAI status i |
---|
| 2088 | # number of tentative |
---|
| 2089 | NB_ESSAI=3 |
---|
| 2090 | # time delay between tentative |
---|
| 2091 | DELAI=2 |
---|
| 2092 | |
---|
| 2093 | i=0 |
---|
| 2094 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2095 | ncecat $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2096 | status=$? |
---|
| 2097 | if [ ${status} -gt 0 ] ; then |
---|
| 2098 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
[938] | 2099 | cat /tmp/out_command.$$ |
---|
| 2100 | \rm /tmp/out_command.$$ |
---|
[810] | 2101 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2102 | sleep $DELAI |
---|
| 2103 | else |
---|
[938] | 2104 | \rm /tmp/out_command.$$ |
---|
[810] | 2105 | break |
---|
| 2106 | fi |
---|
| 2107 | (( i = i + 1 )) |
---|
| 2108 | done |
---|
| 2109 | |
---|
| 2110 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2111 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 2112 | IGCM_debug_Exit "ncecat" |
---|
[810] | 2113 | fi |
---|
| 2114 | |
---|
| 2115 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
| 2116 | } |
---|
| 2117 | |
---|
| 2118 | #D-#================================================== |
---|
| 2119 | #D-function IGCM_sys_ncflint |
---|
| 2120 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
| 2121 | #D-* Examples: |
---|
| 2122 | #D- |
---|
| 2123 | function IGCM_sys_ncflint { |
---|
| 2124 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 2125 | if ( $DEBUG_sys ) ; then |
---|
| 2126 | echo "IGCM_sys_ncflint :" $@ |
---|
| 2127 | fi |
---|
| 2128 | |
---|
| 2129 | typeset NB_ESSAI DELAI status i |
---|
| 2130 | # number of tentative |
---|
| 2131 | NB_ESSAI=3 |
---|
| 2132 | # time delay between tentative |
---|
| 2133 | DELAI=2 |
---|
| 2134 | |
---|
| 2135 | i=0 |
---|
| 2136 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2137 | ncflint $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2138 | status=$? |
---|
| 2139 | if [ ${status} -gt 0 ] ; then |
---|
| 2140 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
[938] | 2141 | cat /tmp/out_command.$$ |
---|
| 2142 | \rm /tmp/out_command.$$ |
---|
[810] | 2143 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2144 | sleep $DELAI |
---|
| 2145 | else |
---|
[938] | 2146 | \rm /tmp/out_command.$$ |
---|
[810] | 2147 | break |
---|
| 2148 | fi |
---|
| 2149 | (( i = i + 1 )) |
---|
| 2150 | done |
---|
| 2151 | |
---|
| 2152 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2153 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2154 | IGCM_debug_Exit "ncflint" |
---|
[810] | 2155 | fi |
---|
| 2156 | |
---|
| 2157 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
| 2158 | } |
---|
| 2159 | |
---|
| 2160 | #D-#================================================== |
---|
| 2161 | #D-function IGCM_sys_ncks |
---|
| 2162 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
| 2163 | #D-* Examples: |
---|
| 2164 | #D- |
---|
| 2165 | function IGCM_sys_ncks { |
---|
| 2166 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2167 | if ( $DEBUG_sys ) ; then |
---|
| 2168 | echo "IGCM_sys_ncks :" $@ |
---|
| 2169 | fi |
---|
| 2170 | |
---|
| 2171 | typeset NB_ESSAI DELAI status i |
---|
| 2172 | # number of tentative |
---|
| 2173 | NB_ESSAI=3 |
---|
| 2174 | # time delay between tentative |
---|
| 2175 | DELAI=2 |
---|
| 2176 | |
---|
| 2177 | i=0 |
---|
| 2178 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2179 | ncks $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2180 | status=$? |
---|
| 2181 | if [ ${status} -gt 0 ] ; then |
---|
| 2182 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
[938] | 2183 | cat /tmp/out_command.$$ |
---|
| 2184 | \rm /tmp/out_command.$$ |
---|
[810] | 2185 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2186 | sleep $DELAI |
---|
| 2187 | else |
---|
[938] | 2188 | \rm /tmp/out_command.$$ |
---|
[810] | 2189 | break |
---|
| 2190 | fi |
---|
| 2191 | (( i = i + 1 )) |
---|
| 2192 | done |
---|
| 2193 | |
---|
| 2194 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2195 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2196 | IGCM_debug_Exit "ncks" |
---|
[810] | 2197 | fi |
---|
| 2198 | |
---|
| 2199 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
| 2200 | } |
---|
| 2201 | |
---|
| 2202 | #D-#================================================== |
---|
| 2203 | #D-function IGCM_sys_ncpdq |
---|
| 2204 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
| 2205 | #D-* Examples: |
---|
| 2206 | #D- |
---|
| 2207 | function IGCM_sys_ncpdq { |
---|
| 2208 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2209 | if ( $DEBUG_sys ) ; then |
---|
| 2210 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2211 | fi |
---|
| 2212 | |
---|
| 2213 | typeset NB_ESSAI DELAI status i |
---|
| 2214 | # number of tentative |
---|
| 2215 | NB_ESSAI=3 |
---|
| 2216 | # time delay between tentative |
---|
| 2217 | DELAI=2 |
---|
| 2218 | |
---|
| 2219 | i=0 |
---|
| 2220 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2221 | ncpdq $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2222 | status=$? |
---|
| 2223 | if [ ${status} -gt 0 ] ; then |
---|
| 2224 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
[938] | 2225 | cat /tmp/out_command.$$ |
---|
| 2226 | \rm /tmp/out_command.$$ |
---|
[810] | 2227 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2228 | sleep $DELAI |
---|
| 2229 | else |
---|
[938] | 2230 | \rm /tmp/out_command.$$ |
---|
[810] | 2231 | break |
---|
| 2232 | fi |
---|
| 2233 | (( i = i + 1 )) |
---|
| 2234 | done |
---|
| 2235 | |
---|
| 2236 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2237 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2238 | IGCM_debug_Exit "ncpdq" |
---|
[810] | 2239 | fi |
---|
| 2240 | |
---|
| 2241 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
| 2242 | } |
---|
| 2243 | |
---|
| 2244 | #D-#================================================== |
---|
| 2245 | #D-function IGCM_sys_ncra |
---|
| 2246 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
| 2247 | #D-* Examples: |
---|
| 2248 | #D- |
---|
| 2249 | function IGCM_sys_ncra { |
---|
| 2250 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2251 | if ( $DEBUG_sys ) ; then |
---|
| 2252 | echo "IGCM_sys_ncra :" $@ |
---|
| 2253 | fi |
---|
| 2254 | |
---|
| 2255 | typeset NB_ESSAI DELAI status i |
---|
| 2256 | # number of tentative |
---|
| 2257 | NB_ESSAI=3 |
---|
| 2258 | # time delay between tentative |
---|
| 2259 | DELAI=2 |
---|
| 2260 | |
---|
| 2261 | i=0 |
---|
| 2262 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2263 | ncra $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2264 | status=$? |
---|
| 2265 | if [ ${status} -gt 0 ] ; then |
---|
| 2266 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
[938] | 2267 | cat /tmp/out_command.$$ |
---|
| 2268 | \rm /tmp/out_command.$$ |
---|
[810] | 2269 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2270 | sleep $DELAI |
---|
| 2271 | else |
---|
[938] | 2272 | \rm /tmp/out_command.$$ |
---|
[810] | 2273 | break |
---|
| 2274 | fi |
---|
| 2275 | (( i = i + 1 )) |
---|
| 2276 | done |
---|
| 2277 | |
---|
| 2278 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2279 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2280 | IGCM_debug_Exit "ncra" |
---|
[810] | 2281 | fi |
---|
| 2282 | |
---|
| 2283 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
| 2284 | } |
---|
| 2285 | |
---|
| 2286 | #D-#================================================== |
---|
| 2287 | #D-function IGCM_sys_ncrcat |
---|
| 2288 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
| 2289 | #D-* Examples: |
---|
| 2290 | #D- |
---|
| 2291 | function IGCM_sys_ncrcat { |
---|
| 2292 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2293 | if ( $DEBUG_sys ) ; then |
---|
| 2294 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2295 | fi |
---|
| 2296 | |
---|
| 2297 | typeset NB_ESSAI DELAI status i lastArg |
---|
| 2298 | # number of tentative |
---|
| 2299 | NB_ESSAI=3 |
---|
| 2300 | # time delay between tentative |
---|
| 2301 | DELAI=2 |
---|
| 2302 | |
---|
| 2303 | i=0 |
---|
| 2304 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2305 | ncrcat $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2306 | status=$? |
---|
| 2307 | if [ ${status} -gt 0 ] ; then |
---|
| 2308 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
[938] | 2309 | cat /tmp/out_command.$$ |
---|
| 2310 | \rm /tmp/out_command.$$ |
---|
[810] | 2311 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2312 | sleep $DELAI |
---|
[938] | 2313 | elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" /tmp/out_command.$$ )" = "X" ] ; then |
---|
[810] | 2314 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
[938] | 2315 | cat /tmp/out_command.$$ |
---|
[810] | 2316 | # remove files having corrupted time axis |
---|
| 2317 | eval lastArg=\${$#} |
---|
| 2318 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
| 2319 | \rm ${lastArg} |
---|
[938] | 2320 | \rm /tmp/out_command.$$ |
---|
[810] | 2321 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2322 | sleep $DELAI |
---|
| 2323 | else |
---|
[938] | 2324 | \rm /tmp/out_command.$$ |
---|
[810] | 2325 | break |
---|
| 2326 | fi |
---|
| 2327 | (( i = i + 1 )) |
---|
| 2328 | done |
---|
| 2329 | |
---|
| 2330 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2331 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
[810] | 2332 | #IGCM_debug_Exit "ncrcat" |
---|
| 2333 | fi |
---|
| 2334 | |
---|
| 2335 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
| 2336 | } |
---|
| 2337 | |
---|
| 2338 | #D-#================================================== |
---|
| 2339 | #D-function IGCM_sys_ncrename |
---|
| 2340 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
| 2341 | #D-* Examples: |
---|
| 2342 | #D- |
---|
| 2343 | function IGCM_sys_ncrename { |
---|
| 2344 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2345 | if ( $DEBUG_sys ) ; then |
---|
| 2346 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2347 | fi |
---|
| 2348 | |
---|
| 2349 | typeset NB_ESSAI DELAI status i |
---|
| 2350 | # number of tentative |
---|
| 2351 | NB_ESSAI=3 |
---|
| 2352 | # time delay between tentative |
---|
| 2353 | DELAI=2 |
---|
| 2354 | |
---|
| 2355 | i=0 |
---|
| 2356 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2357 | ncrename $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2358 | status=$? |
---|
| 2359 | if [ ${status} -gt 0 ] ; then |
---|
| 2360 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
[938] | 2361 | cat /tmp/out_command.$$ |
---|
| 2362 | \rm /tmp/out_command.$$ |
---|
[810] | 2363 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2364 | sleep $DELAI |
---|
| 2365 | else |
---|
[938] | 2366 | \rm /tmp/out_command.$$ |
---|
[810] | 2367 | break |
---|
| 2368 | fi |
---|
| 2369 | (( i = i + 1 )) |
---|
| 2370 | done |
---|
| 2371 | |
---|
| 2372 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2373 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2374 | IGCM_debug_Exit "ncrename" |
---|
[810] | 2375 | fi |
---|
| 2376 | |
---|
| 2377 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
| 2378 | } |
---|
| 2379 | |
---|
| 2380 | #D-#================================================== |
---|
| 2381 | #D-function IGCM_sys_ncwa |
---|
| 2382 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
| 2383 | #D-* Examples: |
---|
| 2384 | #D- |
---|
| 2385 | function IGCM_sys_ncwa { |
---|
| 2386 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2387 | if ( $DEBUG_sys ) ; then |
---|
| 2388 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2389 | fi |
---|
| 2390 | |
---|
| 2391 | typeset NB_ESSAI DELAI status i |
---|
| 2392 | # number of tentative |
---|
| 2393 | NB_ESSAI=3 |
---|
| 2394 | # time delay between tentative |
---|
| 2395 | DELAI=2 |
---|
| 2396 | |
---|
| 2397 | i=0 |
---|
| 2398 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2399 | ncwa $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2400 | status=$? |
---|
| 2401 | if [ ${status} -gt 0 ] ; then |
---|
| 2402 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
[938] | 2403 | cat /tmp/out_command.$$ |
---|
| 2404 | \rm /tmp/out_command.$$ |
---|
[810] | 2405 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2406 | sleep $DELAI |
---|
| 2407 | else |
---|
[938] | 2408 | \rm /tmp/out_command.$$ |
---|
[810] | 2409 | break |
---|
| 2410 | fi |
---|
| 2411 | (( i = i + 1 )) |
---|
| 2412 | done |
---|
| 2413 | |
---|
| 2414 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2415 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2416 | IGCM_debug_Exit "ncwa" |
---|
[810] | 2417 | fi |
---|
| 2418 | |
---|
| 2419 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
| 2420 | } |
---|
| 2421 | |
---|
| 2422 | ############################################################## |
---|
| 2423 | # CDO OPERATOR |
---|
| 2424 | |
---|
| 2425 | #D-#================================================== |
---|
| 2426 | #D-function IGCM_sys_cdo |
---|
| 2427 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
| 2428 | #D-* Examples: |
---|
| 2429 | #D- |
---|
| 2430 | function IGCM_sys_cdo { |
---|
| 2431 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 2432 | if ( $DEBUG_sys ) ; then |
---|
| 2433 | echo "IGCM_sys_cdo :" $@ |
---|
| 2434 | fi |
---|
| 2435 | |
---|
| 2436 | typeset status |
---|
| 2437 | |
---|
[938] | 2438 | \cdo $@ > /tmp/out_command.$$ 2>&1 |
---|
[810] | 2439 | status=$? |
---|
| 2440 | if [ ${status} -gt 0 ] ; then |
---|
| 2441 | echo "IGCM_sys_cdo : error code ${status}" |
---|
[938] | 2442 | cat /tmp/out_command.$$ |
---|
| 2443 | \rm /tmp/out_command.$$ |
---|
[810] | 2444 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2445 | return 1 |
---|
| 2446 | else |
---|
| 2447 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2448 | return 0 |
---|
| 2449 | fi |
---|
| 2450 | |
---|
| 2451 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2452 | } |
---|