[664] | 1 | #!/bin/ksh |
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[2] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[664] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[2] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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[664] | 19 | |
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[2] | 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys Default host |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[664] | 24 | #D- This ksh library if a layer under some usefull |
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[800] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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[2] | 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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[117] | 34 | #==================================================== |
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[800] | 35 | # set DEBUG_sys to true to output calls of function |
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[2] | 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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[117] | 38 | #==================================================== |
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[2] | 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[2] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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[800] | 58 | # Global Variables : |
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[2] | 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[664] | 64 | # Host and user names |
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[217] | 65 | # $hostname ou hostname |
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[228] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[2] | 67 | # $username ou whoami |
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[228] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[71] | 69 | # $hostname of the MASTER job |
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| 70 | typeset -r MASTER=${HOST} |
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[2] | 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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[742] | 77 | # Submit command |
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| 78 | typeset SUBMIT=${SUBMIT:=qsub} |
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[2] | 79 | # rsync with path |
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[664] | 80 | typeset -r RSYNC=/usr/bin/rsync |
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[800] | 81 | # RSYNC_opt args to rsync |
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[117] | 82 | typeset -r RSYNC_opt="-va" |
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[664] | 83 | # ie storage filesystem |
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| 84 | typeset -r STOREHOST=${MASTER} |
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[305] | 85 | |
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[2] | 86 | #==================================================== |
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[305] | 87 | # Set environment tools (ferret, nco, cdo) |
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| 88 | #==================================================== |
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| 89 | #. /home/${LOGIN}/.atlas_env_${HOST}_ksh |
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[2] | 90 | |
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[117] | 91 | #==================================================== |
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[2] | 92 | # Host specific DIRECTORIES |
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| 93 | #==================================================== |
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| 94 | |
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| 95 | #==================================================== |
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[664] | 96 | #- MirrorlibIGCM for frontend |
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| 97 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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[2] | 98 | |
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| 99 | #==================================================== |
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[800] | 100 | #- libIGCM_POST for frontend |
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[343] | 101 | typeset -r libIGCM_POST=${libIGCM} |
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| 102 | |
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| 103 | #==================================================== |
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[664] | 104 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 105 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 106 | |
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| 107 | #==================================================== |
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[2] | 108 | #- SUBMIT_DIR : submission dir |
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[44] | 109 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PWD}} |
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[2] | 110 | |
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| 111 | #==================================================== |
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[725] | 112 | #- IN |
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| 113 | typeset -r R_IN=${R_IN:=/home/${LOGIN}/IGCM} |
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[800] | 114 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/home/${LOGIN}/IGCM} |
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[725] | 115 | |
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| 116 | #==================================================== |
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[811] | 117 | #- ARCHIVE |
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| 118 | typeset ARCHIVE=${ARCHIVE:=/home/${LOGIN}} |
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[2] | 119 | |
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[725] | 120 | #==================================================== |
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| 121 | #- STORAGE (dedicated to small/medium files) |
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[811] | 122 | typeset STORAGE=${ARCHIVE} |
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[664] | 123 | |
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[2] | 124 | #==================================================== |
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[800] | 125 | #- R_OUT |
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| 126 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[2] | 127 | |
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| 128 | #==================================================== |
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[664] | 129 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[800] | 130 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[664] | 131 | |
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| 132 | #==================================================== |
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| 133 | #- R_BUF (ONLY FOR double copy an scratch) |
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[800] | 134 | typeset -r R_BUF=${STORAGE}/IGCM_OUT |
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[664] | 135 | |
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| 136 | #==================================================== |
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[2] | 137 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[800] | 138 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${STORAGE}/RUN_DIR/tmp$$} |
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[2] | 139 | |
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| 140 | #==================================================== |
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| 141 | #- HOST_MPIRUN_COMMAND |
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| 142 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"} |
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| 143 | |
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[61] | 144 | #==================================================== |
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| 145 | #- Max number of arguments passed to nco operator or demigration command |
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| 146 | UNIX_MAX_LIMIT=360 |
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| 147 | |
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[664] | 148 | #==================================================== |
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| 149 | #- Number of core per node (max number of OpenMP task) |
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| 150 | NUM_COREPERNODE=1 |
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| 151 | |
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| 152 | #==================================================== |
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| 153 | #- Default number of MPI task for IPSL coupled model |
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| 154 | #- required for backward compatibility |
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| 155 | #- |
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| 156 | DEFAULT_NUM_PROC_OCE=1 |
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| 157 | DEFAULT_NUM_PROC_CPL=1 |
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| 158 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 159 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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| 160 | |
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[2] | 161 | #D-#================================================== |
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[725] | 162 | #D-function IGCM_sys_ChangeArchive |
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| 163 | #D-* Purpose: Just a dummy call on this machine |
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| 164 | #D-* Examples: |
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| 165 | #D- |
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| 166 | function IGCM_sys_ChangeArchive { |
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| 167 | IGCM_debug_Print 1 " dummy function : IGCM_sys_ChangeArchive " |
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| 168 | } |
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| 169 | |
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| 170 | #D-#================================================== |
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[2] | 171 | #D-function IGCM_sys_RshMaster |
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[800] | 172 | #D-* Purpose: Connection to frontend machine. |
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[2] | 173 | #D-* Examples: |
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| 174 | #D- |
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| 175 | function IGCM_sys_RshMaster { |
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[664] | 176 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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[800] | 177 | /bin/ksh <<-EOF |
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[2] | 178 | export libIGCM=${libIGCM} |
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[98] | 179 | export DEBUG_debug=${DEBUG_debug} |
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[2] | 180 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 181 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 182 | ${@} |
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| 183 | EOF |
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[664] | 184 | if [ $? -gt 0 ] ; then |
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| 185 | echo "IGCM_sys_RshMaster : erreur." |
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| 186 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 187 | fi |
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| 188 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[2] | 189 | } |
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| 190 | |
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| 191 | #D-#================================================== |
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[37] | 192 | #D-function IGCM_sys_RshArchive |
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| 193 | #D-* Purpose: Archive rsh command |
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| 194 | #D-* Examples: |
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| 195 | #D- |
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| 196 | function IGCM_sys_RshArchive { |
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[664] | 197 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[800] | 198 | /bin/ksh <<-EOF |
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[40] | 199 | ${@} |
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| 200 | EOF |
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[811] | 201 | status=$? |
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| 202 | if [ ${status} -gt 0 ] ; then |
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| 203 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}" |
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[664] | 204 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 205 | fi |
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| 206 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[37] | 207 | } |
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| 208 | |
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| 209 | #D-#================================================== |
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[2] | 210 | #D-function IGCM_sys_RshPost |
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[117] | 211 | #D-* Purpose: Post-process rsh command |
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[2] | 212 | #D-* Examples: |
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| 213 | #D- |
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| 214 | function IGCM_sys_RshPost { |
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[664] | 215 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 216 | if ( $DEBUG_sys ) ; then |
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| 217 | echo "IGCM_sys_RshPost :" $@ |
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| 218 | fi |
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[800] | 219 | |
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| 220 | # keep standard input (stdin) for the loop onto temporary file |
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| 221 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 222 | |
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| 223 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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[664] | 224 | if [ $? -gt 0 ] ; then |
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| 225 | echo "IGCM_sys_RshPost : erreur." |
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| 226 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 227 | fi |
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[800] | 228 | # delete temporary file |
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| 229 | \rm tmp_IGCM_sys_RshPost_$$ |
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[664] | 230 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[2] | 231 | } |
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| 232 | |
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| 233 | #D-#================================================== |
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[153] | 234 | #D-function IGCM_sys_SendMail |
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| 235 | #D-* Purpose: Send mail when simulation is over |
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| 236 | #D-* Examples: |
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| 237 | #D- |
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| 238 | function IGCM_sys_SendMail { |
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[664] | 239 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 240 | if ( $DEBUG_sys ) ; then |
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| 241 | echo "IGCM_sys_SendMail :" $@ |
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| 242 | fi |
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[153] | 243 | |
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[664] | 244 | if ( ${ExitFlag} ) ; then |
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| 245 | status=failed |
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| 246 | else |
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| 247 | status=completed |
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| 248 | fi |
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[800] | 249 | |
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[664] | 250 | cat << END_MAIL > job_end.mail |
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[437] | 251 | Dear ${LOGIN}, |
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| 252 | |
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[452] | 253 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[153] | 254 | Job started : ${DateBegin} |
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| 255 | Job ended : ${DateEnd} |
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[434] | 256 | Output files are available in ${R_SAVE} |
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[800] | 257 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 258 | Pre-packed files are temporarily available in ${R_BUFR} |
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[452] | 259 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[153] | 260 | END_MAIL |
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| 261 | |
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[664] | 262 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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| 263 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 264 | elif [ -f ~/.forward ] ; then |
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| 265 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 266 | fi |
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[153] | 267 | |
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[811] | 268 | sleep 10 |
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| 269 | rm -f job_end.mail |
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| 270 | |
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[664] | 271 | if [ $? -gt 0 ] ; then |
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| 272 | echo "IGCM_sys_SendMail : erreur." |
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| 273 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 274 | fi |
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| 275 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[153] | 276 | } |
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| 277 | |
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| 278 | #D-#================================================== |
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[2] | 279 | #D-function IGCM_sys_Mkdir |
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| 280 | #D-* Purpose: Master locale mkdir command |
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| 281 | #D-* Examples: |
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| 282 | #D- |
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| 283 | function IGCM_sys_Mkdir { |
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[664] | 284 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 285 | if ( $DEBUG_sys ) ; then |
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| 286 | echo "IGCM_sys_Mkdir :" $@ |
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| 287 | fi |
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| 288 | if [ ! -d ${1} ]; then |
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| 289 | \mkdir -p $1 |
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| 290 | if [ $? -gt 0 ] ; then |
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| 291 | echo "IGCM_sys_Mkdir : erreur." |
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| 292 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[2] | 293 | fi |
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[664] | 294 | fi |
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[800] | 295 | # vérification : |
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[664] | 296 | if [ ! -d ${1} ] ; then |
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| 297 | echo "IGCM_sys_Mkdir : erreur." |
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| 298 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 299 | fi |
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| 300 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[2] | 301 | } |
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| 302 | |
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| 303 | #D-#================================================== |
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| 304 | #D-function IGCM_sys_MkdirArchive |
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| 305 | #D-* Purpose: Mkdir on Archive |
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| 306 | #D-* Examples: |
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| 307 | #D- |
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| 308 | function IGCM_sys_MkdirArchive { |
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[664] | 309 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 310 | if ( $DEBUG_sys ) ; then |
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| 311 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 312 | fi |
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[800] | 313 | #- creation de repertoire sur le serveur fichier |
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[811] | 314 | mkdir -p $1 |
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| 315 | status=$? |
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| 316 | |
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| 317 | if [ ${status} -gt 0 ] ; then |
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| 318 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}" |
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| 319 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[664] | 320 | fi |
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| 321 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[2] | 322 | } |
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| 323 | |
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| 324 | #D-#================================================== |
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| 325 | #D-function IGCM_sys_MkdirWork |
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| 326 | #D-* Purpose: Mkdir on Work |
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| 327 | #D-* Examples: |
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| 328 | #D- |
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| 329 | function IGCM_sys_MkdirWork { |
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[664] | 330 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 331 | if ( $DEBUG_sys ) ; then |
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| 332 | echo "IGCM_sys_MkdirWork :" $@ |
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| 333 | fi |
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[800] | 334 | #- creation de repertoire sur le serveur fichier |
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[664] | 335 | if [ ! -d ${1} ]; then |
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| 336 | \mkdir -p $1 |
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| 337 | if [ $? -gt 0 ] ; then |
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| 338 | echo "IGCM_sys_MkdirWork : erreur." |
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| 339 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[2] | 340 | fi |
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[664] | 341 | fi |
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| 342 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[2] | 343 | } |
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| 344 | |
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| 345 | #D-#================================================== |
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| 346 | #D-function IGCM_sys_Cd |
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| 347 | #D-* Purpose: master cd command |
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| 348 | #D-* Examples: |
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| 349 | #D- |
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| 350 | function IGCM_sys_Cd { |
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[664] | 351 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 352 | if ( $DEBUG_sys ) ; then |
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| 353 | echo "IGCM_sys_Cd :" $@ |
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| 354 | fi |
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| 355 | \cd $1 |
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| 356 | if [ $? -gt 0 ] ; then |
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| 357 | echo "IGCM_sys_Cd : erreur." |
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| 358 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 359 | fi |
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| 360 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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[2] | 361 | } |
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| 362 | |
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| 363 | #D-#================================================== |
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| 364 | #D-function IGCM_sys_Chmod |
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| 365 | #D-* Purpose: Chmod |
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| 366 | #D-* Examples: |
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| 367 | #D- |
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| 368 | function IGCM_sys_Chmod { |
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[664] | 369 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 370 | if ( $DEBUG_sys ) ; then |
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| 371 | echo "IGCM_sys_Chmod :" $@ |
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| 372 | fi |
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[809] | 373 | \chmod $@ |
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| 374 | if [ $? -gt 0 ] ; then |
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| 375 | echo "IGCM_sys_Chmod : erreur." |
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| 376 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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[664] | 377 | fi |
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| 378 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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[2] | 379 | } |
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| 380 | |
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| 381 | #D-#================================================== |
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| 382 | #D-function IGCM_sys_FileSize |
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| 383 | #D-* Purpose: Filesize |
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| 384 | #D-* Examples: |
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| 385 | #D- |
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| 386 | function IGCM_sys_FileSize { |
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[664] | 387 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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[2] | 388 | |
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[664] | 389 | typeset sizeF |
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| 390 | set +A sizeF -- $( ls -la ${1} ) |
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| 391 | if [ $? -gt 0 ] ; then |
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| 392 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 393 | fi |
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| 394 | eval ${2}=${sizeF[4]} |
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[2] | 395 | |
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[664] | 396 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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[2] | 397 | } |
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| 398 | |
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| 399 | #D-#================================================== |
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| 400 | #D-function IGCM_sys_TestDir |
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| 401 | #D-* Purpose: Test Directory that must exists |
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| 402 | #D-* Examples: |
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| 403 | #D- |
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| 404 | function IGCM_sys_TestDir { |
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[664] | 405 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 406 | if ( $DEBUG_sys ) ; then |
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| 407 | echo "IGCM_sys_TestDir :" $@ |
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| 408 | fi |
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| 409 | typeset ExistFlag |
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| 410 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 411 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[67] | 412 | |
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[664] | 413 | return ${ExistFlag} |
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[2] | 414 | } |
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| 415 | |
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| 416 | #D-#================================================== |
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| 417 | #D-function IGCM_sys_TestDirArchive |
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| 418 | #D-* Purpose: Test Directory that must exists on Archive |
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| 419 | #D-* Examples: |
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| 420 | #D- |
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| 421 | function IGCM_sys_TestDirArchive { |
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[664] | 422 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 423 | if ( $DEBUG_sys ) ; then |
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| 424 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 425 | fi |
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| 426 | typeset ExistFlag |
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| 427 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 428 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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| 429 | return ${ExistFlag} |
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[2] | 430 | } |
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| 431 | |
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| 432 | #D-#================================================== |
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[800] | 433 | #D-function IGCM_sys_IsFileArchived |
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| 434 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 435 | #D-* Examples: |
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| 436 | #D- |
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| 437 | function IGCM_sys_IsFileArchived { |
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| 438 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 439 | if ( $DEBUG_sys ) ; then |
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| 440 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 441 | fi |
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| 442 | typeset IsArchivedFlag |
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| 443 | # Never archived for this system |
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| 444 | IsArchivedFlag=1 |
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| 445 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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| 446 | |
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| 447 | return ${IsArchivedFlag} |
---|
| 448 | } |
---|
| 449 | |
---|
| 450 | #D-#================================================== |
---|
[2] | 451 | #D-function IGCM_sys_TestFileArchive |
---|
| 452 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 453 | #D-* Examples: |
---|
| 454 | #D- |
---|
| 455 | function IGCM_sys_TestFileArchive { |
---|
[664] | 456 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 457 | typeset ExistFlag |
---|
| 458 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 459 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[67] | 460 | |
---|
[664] | 461 | return ${ExistFlag} |
---|
[67] | 462 | } |
---|
| 463 | |
---|
| 464 | #D-#================================================== |
---|
[664] | 465 | #D-function IGCM_sys_TestFileBuffer |
---|
| 466 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 467 | #D-* Examples: |
---|
| 468 | #D- |
---|
| 469 | function IGCM_sys_TestFileBuffer { |
---|
| 470 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 471 | typeset ExistFlag |
---|
| 472 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 473 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 474 | |
---|
| 475 | return ${ExistFlag} |
---|
| 476 | } |
---|
| 477 | |
---|
| 478 | #D-#================================================== |
---|
[67] | 479 | #D-function IGCM_sys_CountFileArchive |
---|
| 480 | #D-* Purpose: Count files on Archive filesystem |
---|
| 481 | #D-* Examples: |
---|
| 482 | #D- |
---|
| 483 | function IGCM_sys_CountFileArchive { |
---|
[664] | 484 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 485 | ls ${@} 2>/dev/null | wc -l |
---|
| 486 | if [ $? -gt 0 ] ; then |
---|
| 487 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 488 | fi |
---|
| 489 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[2] | 490 | } |
---|
| 491 | |
---|
| 492 | #D-#================================================== |
---|
[664] | 493 | #D-function IGCM_sys_CountFileBuffer |
---|
| 494 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 495 | #D-* Examples: |
---|
| 496 | #D- |
---|
| 497 | function IGCM_sys_CountFileBuffer { |
---|
| 498 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 499 | ls ${@} 2>/dev/null | wc -l |
---|
| 500 | if [ $? -gt 0 ] ; then |
---|
| 501 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 502 | fi |
---|
| 503 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 504 | } |
---|
| 505 | |
---|
| 506 | #D-#================================================== |
---|
[2] | 507 | #D-function IGCM_sys_Tree |
---|
| 508 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 509 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 510 | #D- |
---|
| 511 | function IGCM_sys_Tree { |
---|
[664] | 512 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 513 | if ( $DEBUG_sys ) ; then |
---|
| 514 | echo "IGCM_sys_Tree :" $@ |
---|
| 515 | fi |
---|
[2] | 516 | |
---|
[664] | 517 | \tree -f $@ |
---|
[2] | 518 | |
---|
[664] | 519 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[2] | 520 | } |
---|
| 521 | |
---|
| 522 | #D-#================================================== |
---|
| 523 | #D-function IGCM_sys_Tar |
---|
[664] | 524 | #D-* Purpose: master tar command |
---|
[2] | 525 | #D-* Examples: |
---|
| 526 | #D- |
---|
| 527 | function IGCM_sys_Tar { |
---|
[664] | 528 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 529 | if ( $DEBUG_sys ) ; then |
---|
| 530 | echo "IGCM_sys_Tar :" $@ |
---|
| 531 | fi |
---|
| 532 | \tar cf $@ |
---|
| 533 | if [ $? -gt 0 ] ; then |
---|
| 534 | echo "IGCM_sys_Tar : erreur." |
---|
| 535 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 536 | fi |
---|
| 537 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[2] | 538 | } |
---|
| 539 | |
---|
| 540 | #D-#================================================== |
---|
| 541 | #D-function IGCM_sys_UnTar |
---|
| 542 | #D-* Purpose: master un-tar command |
---|
| 543 | #D-* Examples: |
---|
| 544 | #D- |
---|
| 545 | function IGCM_sys_UnTar { |
---|
[664] | 546 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 547 | if ( $DEBUG_sys ) ; then |
---|
| 548 | echo "IGCM_sys_UnTar :" $@ |
---|
| 549 | fi |
---|
| 550 | \tar xvf $1 |
---|
| 551 | if [ $? -gt 0 ] ; then |
---|
| 552 | echo "IGCM_sys_UnTar : erreur." |
---|
| 553 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 554 | fi |
---|
| 555 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[2] | 556 | } |
---|
| 557 | |
---|
| 558 | #D-#================================================== |
---|
| 559 | #D-function IGCM_sys_Qsub |
---|
| 560 | #D-* Purpose: Qsub new job |
---|
| 561 | #D-* Examples: |
---|
| 562 | #D- |
---|
| 563 | function IGCM_sys_Qsub { |
---|
[664] | 564 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 565 | if ( $DEBUG_sys ) ; then |
---|
| 566 | echo "IGCM_sys_Qsub :" $@ |
---|
| 567 | fi |
---|
[800] | 568 | echo "${@} > ${SUBMIT_DIR}/${Script_Output} 2>&1 &" |
---|
| 569 | ${@} > ${SUBMIT_DIR}/${Script_Output} 2>&1 & |
---|
[664] | 570 | if [ $? -gt 0 ] ; then |
---|
[800] | 571 | echo "IGCM_sys_Qsub : erreur ${options} $1" |
---|
[664] | 572 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 573 | fi |
---|
| 574 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[2] | 575 | } |
---|
| 576 | |
---|
| 577 | #D-#================================================== |
---|
| 578 | #D-function IGCM_sys_QsubPost |
---|
| 579 | #D-* Purpose: Qsub new job on scalaire |
---|
| 580 | #D-* Examples: |
---|
| 581 | #D- |
---|
| 582 | function IGCM_sys_QsubPost { |
---|
[664] | 583 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 584 | if ( $DEBUG_sys ) ; then |
---|
| 585 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 586 | fi |
---|
| 587 | echo "${libIGCM_POST}/$1.job > ${POST_DIR}/$1.${PeriodDateEnd}.out 2>&1 &" |
---|
| 588 | ${libIGCM_POST}/$1.job > ${POST_DIR}/${Script_Post_Output}.out 2>&1 & |
---|
| 589 | if [ $? -gt 0 ] ; then |
---|
| 590 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 591 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 592 | fi |
---|
| 593 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[2] | 594 | } |
---|
| 595 | |
---|
| 596 | #D-************************* |
---|
[664] | 597 | #D- File transfer functions |
---|
[2] | 598 | #D-************************* |
---|
| 599 | #D- |
---|
| 600 | |
---|
| 601 | #D-#================================================== |
---|
| 602 | #D-function IGCM_sys_Rsync_out |
---|
| 603 | #D-* Purpose: treat return val of rsync |
---|
[800] | 604 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
[2] | 605 | #D- Error values and explanations can depend on your system version. |
---|
| 606 | function IGCM_sys_Rsync_out { |
---|
[800] | 607 | status=$1 |
---|
| 608 | if [ ! $status ] ; then |
---|
[664] | 609 | echo "rsync error !" |
---|
| 610 | fi |
---|
[2] | 611 | |
---|
[664] | 612 | if [ $MYLANG = "fr" ]; then |
---|
[800] | 613 | case $status in |
---|
[664] | 614 | 0) return ;; |
---|
| 615 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 616 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 617 | return;; |
---|
| 618 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 619 | echo "Incompatibilité de protocole." |
---|
| 620 | return;; |
---|
| 621 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 622 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 623 | echo "répertoires" |
---|
| 624 | return;; |
---|
| 625 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 626 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 627 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 628 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 629 | echo "pas par le serveur a été spécifiée." |
---|
| 630 | return;; |
---|
| 631 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 632 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 633 | return;; |
---|
| 634 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 635 | echo "Erreur d'entrée sortie fichier" |
---|
| 636 | return;; |
---|
| 637 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 638 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 639 | return;; |
---|
| 640 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 641 | echo "Erreur avec les diagnostics du programme" |
---|
| 642 | return;; |
---|
| 643 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 644 | echo "Erreur dans le code IPC" |
---|
| 645 | return;; |
---|
| 646 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 647 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 648 | return;; |
---|
| 649 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 650 | echo "Une erreur retournée par waitpid()" |
---|
| 651 | return;; |
---|
| 652 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 653 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 654 | return;; |
---|
| 655 | 23) echo "" |
---|
| 656 | echo "Erreur fichier inexistant" |
---|
| 657 | return;; |
---|
| 658 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 659 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 660 | return;; |
---|
[800] | 661 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[664] | 662 | return;; |
---|
| 663 | esac |
---|
| 664 | elif [ $MYLANG = "en" ] ; then |
---|
[800] | 665 | case $status in |
---|
[664] | 666 | 0) return;; |
---|
| 667 | 1) echo "rsync error : Syntax or usage error " |
---|
| 668 | return;; |
---|
| 669 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 670 | return;; |
---|
| 671 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 672 | return;; |
---|
| 673 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 674 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 675 | echo "them; or an option was specified that is supported by the client and" |
---|
| 676 | echo "not by the server." |
---|
| 677 | return;; |
---|
| 678 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 679 | return;; |
---|
| 680 | 10) echo "rsync error : Error in socket I/O " |
---|
| 681 | return;; |
---|
| 682 | 11) echo "rsync error : Error in file I/O " |
---|
| 683 | return;; |
---|
| 684 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 685 | return;; |
---|
| 686 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 687 | return;; |
---|
| 688 | 14) echo "rsync error : Error in IPC code " |
---|
| 689 | return;; |
---|
| 690 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 691 | return;; |
---|
| 692 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 693 | return;; |
---|
| 694 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 695 | return;; |
---|
| 696 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 697 | return;; |
---|
| 698 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 699 | return;; |
---|
| 700 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 701 | return;; |
---|
[800] | 702 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[664] | 703 | return;; |
---|
| 704 | esac |
---|
| 705 | else |
---|
| 706 | echo "unknown language $MYLANG." |
---|
| 707 | return |
---|
| 708 | fi |
---|
[2] | 709 | } |
---|
[664] | 710 | |
---|
[2] | 711 | #D-#================================================== |
---|
[811] | 712 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 713 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
| 714 | #D-* Examples: |
---|
| 715 | #D- |
---|
| 716 | function IGCM_sys_Mirror_libIGCM { |
---|
| 717 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 718 | if ( $DEBUG_sys ) ; then |
---|
| 719 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 720 | fi |
---|
| 721 | |
---|
| 722 | typeset status |
---|
| 723 | |
---|
| 724 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
| 725 | |
---|
| 726 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 727 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
| 728 | status=$? |
---|
| 729 | |
---|
| 730 | if [ ${status} -gt 0 ] ; then |
---|
| 731 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
| 732 | cat out_rsync |
---|
| 733 | fi |
---|
| 734 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
| 735 | } |
---|
| 736 | |
---|
| 737 | #D-#================================================== |
---|
[2] | 738 | #D-function IGCM_sys_Cp |
---|
| 739 | #D-* Purpose: generic cp |
---|
| 740 | #D-* Examples: |
---|
| 741 | #D- |
---|
| 742 | function IGCM_sys_Cp { |
---|
[664] | 743 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 744 | if ( $DEBUG_sys ) ; then |
---|
| 745 | echo "IGCM_sys_Cp :" $@ |
---|
| 746 | fi |
---|
[2] | 747 | |
---|
[717] | 748 | typeset status |
---|
[2] | 749 | |
---|
[717] | 750 | echo cp $@ > out_rsync 2>&1 |
---|
| 751 | \cp $@ >> out_rsync 2>&1 |
---|
| 752 | status=$? |
---|
[664] | 753 | |
---|
[717] | 754 | if [ ${status} -gt 0 ] ; then |
---|
| 755 | echo "IGCM_sys_Cp : error code ${status}" |
---|
| 756 | cat out_rsync |
---|
| 757 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
[664] | 758 | else |
---|
| 759 | \rm out_rsync |
---|
| 760 | fi |
---|
| 761 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[2] | 762 | } |
---|
| 763 | |
---|
| 764 | #D-#================================================== |
---|
| 765 | #D-function IGCM_sys_Rm |
---|
| 766 | #D-* Purpose: generic rm |
---|
| 767 | #D-* Examples: |
---|
| 768 | #D- |
---|
| 769 | function IGCM_sys_Rm { |
---|
[664] | 770 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 771 | if ( $DEBUG_sys ) ; then |
---|
| 772 | echo "IGCM_sys_Rm :" $@ |
---|
| 773 | fi |
---|
[2] | 774 | |
---|
[717] | 775 | typeset status |
---|
[2] | 776 | |
---|
[664] | 777 | echo rm $@ > out_rsync 2>&1 |
---|
| 778 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 779 | status=$? |
---|
[664] | 780 | |
---|
[717] | 781 | if [ ${status} -gt 0 ] ; then |
---|
| 782 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[664] | 783 | cat out_rsync |
---|
| 784 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 785 | else |
---|
| 786 | \rm out_rsync |
---|
| 787 | fi |
---|
| 788 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[2] | 789 | } |
---|
| 790 | |
---|
| 791 | #D-#================================================== |
---|
[203] | 792 | #D-function IGCM_sys_RmRunDir |
---|
| 793 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 794 | #D- scheduler will do the job) |
---|
| 795 | #D-* Examples: |
---|
| 796 | #D- |
---|
| 797 | function IGCM_sys_RmRunDir { |
---|
[664] | 798 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 799 | if ( $DEBUG_sys ) ; then |
---|
| 800 | echo "IGCM_sys_RmRunDir :" $@ |
---|
[800] | 801 | echo "Dummy call, let the user do that." |
---|
[785] | 802 | # IGCM_sys_Rm -rf ${RUN_DIR} |
---|
[664] | 803 | fi |
---|
| 804 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[203] | 805 | } |
---|
| 806 | |
---|
| 807 | #D-#================================================== |
---|
[2] | 808 | #D-function IGCM_sys_Mv |
---|
| 809 | #D-* Purpose: generic move |
---|
| 810 | #D-* Examples: |
---|
| 811 | #D- |
---|
| 812 | function IGCM_sys_Mv { |
---|
[664] | 813 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 814 | if ( $DEBUG_sys ) ; then |
---|
| 815 | echo "IGCM_sys_Mv :" $@ |
---|
| 816 | fi |
---|
[2] | 817 | |
---|
[664] | 818 | if [ $DRYRUN = 0 ]; then |
---|
[2] | 819 | |
---|
[717] | 820 | typeset status |
---|
[664] | 821 | |
---|
| 822 | echo mv $@ > out_rsync 2>&1 |
---|
| 823 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 824 | status=$? |
---|
[664] | 825 | |
---|
[717] | 826 | if [ ${status} -gt 0 ] ; then |
---|
| 827 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[664] | 828 | cat out_rsync |
---|
| 829 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[173] | 830 | else |
---|
[664] | 831 | \rm out_rsync |
---|
[2] | 832 | fi |
---|
[664] | 833 | else |
---|
| 834 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 835 | fi |
---|
[2] | 836 | |
---|
[664] | 837 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[2] | 838 | } |
---|
| 839 | |
---|
| 840 | #D-#================================================== |
---|
| 841 | #D-function IGCM_sys_Put_Dir |
---|
| 842 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 843 | #D-* Examples: |
---|
| 844 | #D- |
---|
| 845 | function IGCM_sys_Put_Dir { |
---|
[664] | 846 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 847 | if ( $DEBUG_sys ) ; then |
---|
| 848 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 849 | fi |
---|
| 850 | if [ $DRYRUN = 0 ]; then |
---|
| 851 | if [ ! -d ${1} ] ; then |
---|
| 852 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 853 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 854 | return |
---|
[2] | 855 | fi |
---|
| 856 | |
---|
[717] | 857 | typeset status |
---|
[2] | 858 | |
---|
[717] | 859 | # Only if we use rsync |
---|
| 860 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 861 | # |
---|
| 862 | #USUAL WAY |
---|
| 863 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 864 | status=$? |
---|
[2] | 865 | |
---|
[717] | 866 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 867 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}" |
---|
[664] | 868 | cat out_rsync |
---|
| 869 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[2] | 870 | else |
---|
[664] | 871 | \rm out_rsync |
---|
[2] | 872 | fi |
---|
[664] | 873 | else |
---|
| 874 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 875 | fi |
---|
| 876 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[2] | 877 | } |
---|
| 878 | |
---|
| 879 | #D-#================================================== |
---|
| 880 | #D-function IGCM_sys_Get_Dir |
---|
[717] | 881 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[2] | 882 | #D-* Examples: |
---|
| 883 | #D- |
---|
| 884 | function IGCM_sys_Get_Dir { |
---|
[664] | 885 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 886 | if ( $DEBUG_sys ) ; then |
---|
| 887 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 888 | fi |
---|
| 889 | if [ $DRYRUN = 0 ]; then |
---|
| 890 | if [ ! -d ${1} ] ; then |
---|
| 891 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 892 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 893 | return |
---|
[2] | 894 | fi |
---|
| 895 | |
---|
[811] | 896 | typeset status |
---|
[2] | 897 | |
---|
[800] | 898 | #USUAL WAY |
---|
[811] | 899 | \cp -ur $1 $2 > out_rsync 2>&1 |
---|
| 900 | status=$? |
---|
[2] | 901 | |
---|
[811] | 902 | if [ ${status} -gt 0 ] ; then |
---|
| 903 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
[664] | 904 | cat out_rsync |
---|
| 905 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[2] | 906 | else |
---|
[664] | 907 | \rm out_rsync |
---|
[2] | 908 | fi |
---|
[664] | 909 | else |
---|
| 910 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 911 | fi |
---|
| 912 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[2] | 913 | } |
---|
| 914 | |
---|
| 915 | #D-#================================================== |
---|
| 916 | #D-function IGCM_sys_Get_Master |
---|
| 917 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 918 | #D-* Examples: |
---|
| 919 | #D- |
---|
| 920 | function IGCM_sys_Get_Master { |
---|
[664] | 921 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 922 | if ( $DEBUG_sys ) ; then |
---|
| 923 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 924 | fi |
---|
| 925 | if [ $DRYRUN = 0 ]; then |
---|
| 926 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
| 927 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 928 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 929 | return |
---|
[2] | 930 | fi |
---|
| 931 | |
---|
[811] | 932 | typeset NB_ESSAI DELAI status i |
---|
| 933 | # number of tentative |
---|
| 934 | NB_ESSAI=3 |
---|
| 935 | # time delay between tentative |
---|
| 936 | DELAI=2 |
---|
[2] | 937 | |
---|
[811] | 938 | i=0 |
---|
| 939 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 940 | \cp -urL $1 $2 > out_rsync 2>&1 |
---|
| 941 | status=$? |
---|
| 942 | if [ ${status} -gt 0 ]; then |
---|
| 943 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 944 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 945 | sleep $DELAI |
---|
| 946 | else |
---|
| 947 | break |
---|
| 948 | fi |
---|
| 949 | (( i = i + 1 )) |
---|
| 950 | done |
---|
[2] | 951 | |
---|
[811] | 952 | if [ ${status} -gt 0 ] ; then |
---|
[664] | 953 | echo "IGCM_sys_Get_Master : error." |
---|
| 954 | cat out_rsync |
---|
| 955 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[2] | 956 | else |
---|
[664] | 957 | \rm out_rsync |
---|
[2] | 958 | fi |
---|
[664] | 959 | else |
---|
| 960 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 961 | fi |
---|
| 962 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[2] | 963 | } |
---|
| 964 | |
---|
[811] | 965 | #==================================================== |
---|
| 966 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 967 | if ( $MirrorlibIGCM ) ; then |
---|
| 968 | IGCM_sys_Mirror_libIGCM |
---|
| 969 | fi |
---|
| 970 | |
---|
[2] | 971 | #D-#================================================== |
---|
| 972 | #D-function IGCM_sys_Put_Rest |
---|
[717] | 973 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[117] | 974 | #D- File and target directory must exist. |
---|
[2] | 975 | #D-* Examples: |
---|
| 976 | #D- |
---|
| 977 | function IGCM_sys_Put_Rest { |
---|
[664] | 978 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 979 | if ( $DEBUG_sys ) ; then |
---|
| 980 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 981 | fi |
---|
| 982 | if [ $DRYRUN = 0 ]; then |
---|
| 983 | if [ ! -f ${1} ] ; then |
---|
| 984 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 985 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[2] | 986 | fi |
---|
[717] | 987 | |
---|
| 988 | typeset status |
---|
| 989 | # |
---|
[664] | 990 | if [ X${JobType} = XRUN ] ; then |
---|
| 991 | IGCM_sys_Chmod 444 ${1} |
---|
| 992 | fi |
---|
[717] | 993 | # |
---|
[811] | 994 | # Only if we use rsync |
---|
| 995 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 996 | # |
---|
| 997 | #USUAL WAY |
---|
[717] | 998 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 999 | status=$? |
---|
[2] | 1000 | |
---|
[717] | 1001 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1002 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1003 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[2] | 1004 | |
---|
[717] | 1005 | # #RSYNC WITH NFS USE |
---|
| 1006 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1007 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[2] | 1008 | |
---|
[717] | 1009 | # status=$? |
---|
| 1010 | # IGCM_sys_Rsync_out $status |
---|
| 1011 | |
---|
| 1012 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1013 | # (( status=status+$? )) |
---|
| 1014 | |
---|
| 1015 | if [ ${status} -gt 0 ] ; then |
---|
| 1016 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[664] | 1017 | cat out_rsync |
---|
| 1018 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 1019 | else |
---|
| 1020 | \rm out_rsync |
---|
| 1021 | fi |
---|
| 1022 | else |
---|
| 1023 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1024 | fi |
---|
| 1025 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 1026 | } |
---|
[2] | 1027 | |
---|
[664] | 1028 | #D-#================================================== |
---|
| 1029 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1030 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1031 | #D- File and target directory must exist. |
---|
| 1032 | #D-* Examples: |
---|
| 1033 | #D- |
---|
| 1034 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1035 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1036 | if ( $DEBUG_sys ) ; then |
---|
| 1037 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1038 | fi |
---|
| 1039 | if [ $DRYRUN = 0 ]; then |
---|
| 1040 | if [ ! -f ${1} ] ; then |
---|
| 1041 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1042 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1043 | fi |
---|
[2] | 1044 | |
---|
[717] | 1045 | typeset status |
---|
[664] | 1046 | # |
---|
| 1047 | if [ X${JobType} = XRUN ] ; then |
---|
| 1048 | IGCM_sys_Chmod 444 ${1} |
---|
| 1049 | fi |
---|
| 1050 | |
---|
| 1051 | # |
---|
| 1052 | # USUAL WAY |
---|
| 1053 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1054 | status=$? |
---|
[664] | 1055 | |
---|
[717] | 1056 | if [ ${status} -gt 0 ] ; then |
---|
| 1057 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[811] | 1058 | [ -f ${2} ] && ls -l ${2} |
---|
| 1059 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[664] | 1060 | cat out_rsync |
---|
| 1061 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
[2] | 1062 | else |
---|
[664] | 1063 | \rm out_rsync |
---|
[2] | 1064 | fi |
---|
[664] | 1065 | else |
---|
| 1066 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1067 | fi |
---|
| 1068 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
[2] | 1069 | } |
---|
| 1070 | |
---|
| 1071 | #D-#================================================== |
---|
[801] | 1072 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1073 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1074 | #D-* Examples: |
---|
| 1075 | #D- |
---|
| 1076 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1077 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 1078 | echo $1 |
---|
| 1079 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1080 | } |
---|
| 1081 | |
---|
| 1082 | #D-#================================================== |
---|
[2] | 1083 | #D-function IGCM_sys_Put_Out |
---|
[717] | 1084 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[2] | 1085 | #D-* Examples: |
---|
| 1086 | #D- |
---|
| 1087 | function IGCM_sys_Put_Out { |
---|
[664] | 1088 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1089 | if ( $DEBUG_sys ) ; then |
---|
| 1090 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1091 | fi |
---|
[811] | 1092 | |
---|
| 1093 | typeset status |
---|
| 1094 | |
---|
[664] | 1095 | if [ $DRYRUN = 0 ]; then |
---|
[811] | 1096 | if [ ! -f ${1} ] ; then |
---|
[664] | 1097 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1098 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1099 | return 1 |
---|
[2] | 1100 | fi |
---|
[800] | 1101 | # |
---|
[811] | 1102 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1103 | # |
---|
[664] | 1104 | if [ X${JobType} = XRUN ] ; then |
---|
| 1105 | if [ X${3} = X ] ; then |
---|
| 1106 | IGCM_sys_Chmod 444 ${1} |
---|
| 1107 | fi |
---|
| 1108 | fi |
---|
[800] | 1109 | # |
---|
[2] | 1110 | |
---|
[664] | 1111 | echo ${RSYNC} ${RSYNC_opt} $1 $2 > out_rsync 2>&1 |
---|
| 1112 | ${RSYNC} ${RSYNC_opt} $1 $2 >> out_rsync 2>&1 |
---|
[811] | 1113 | status=$? |
---|
| 1114 | IGCM_sys_Rsync_out $status |
---|
[2] | 1115 | |
---|
[664] | 1116 | ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[811] | 1117 | (( status=status+$? )) |
---|
[2] | 1118 | |
---|
[811] | 1119 | if [ ${status} -gt 0 ] ; then |
---|
| 1120 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : rsync failed error code ${status}" |
---|
[664] | 1121 | cat out_rsync |
---|
| 1122 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[2] | 1123 | else |
---|
[664] | 1124 | \rm out_rsync |
---|
[2] | 1125 | fi |
---|
[664] | 1126 | else |
---|
| 1127 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1128 | fi |
---|
| 1129 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1130 | return 0 |
---|
[2] | 1131 | } |
---|
| 1132 | |
---|
| 1133 | #D-#================================================== |
---|
[664] | 1134 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1135 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1136 | #D-* Examples: |
---|
| 1137 | #D- |
---|
| 1138 | function IGCM_sys_PutBuffer_Out { |
---|
| 1139 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1140 | if ( $DEBUG_sys ) ; then |
---|
| 1141 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1142 | fi |
---|
[811] | 1143 | |
---|
| 1144 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1145 | |
---|
| 1146 | # number of tentative |
---|
| 1147 | NB_ESSAI=3 |
---|
| 1148 | # time delay between tentative |
---|
| 1149 | DELAI=2 |
---|
| 1150 | |
---|
[664] | 1151 | if [ $DRYRUN = 0 ]; then |
---|
| 1152 | if [ ! -f ${1} ] ; then |
---|
| 1153 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1154 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1155 | return 1 |
---|
| 1156 | fi |
---|
| 1157 | # |
---|
| 1158 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1159 | # |
---|
| 1160 | |
---|
[811] | 1161 | exist=false |
---|
| 1162 | skip=false |
---|
| 1163 | if [ -f $2 ] ; then |
---|
| 1164 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1165 | exist=true |
---|
| 1166 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1167 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1168 | status=0 |
---|
| 1169 | skip=true |
---|
| 1170 | else |
---|
| 1171 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1172 | skip=false |
---|
[664] | 1173 | fi |
---|
| 1174 | fi |
---|
| 1175 | # |
---|
[811] | 1176 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1177 | IGCM_sys_Chmod u+w $2 |
---|
| 1178 | fi |
---|
[664] | 1179 | |
---|
[811] | 1180 | if [ X${skip} = Xfalse ] ; then |
---|
| 1181 | i=0 |
---|
| 1182 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1183 | # USUAL WAY |
---|
| 1184 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1185 | status=$? |
---|
| 1186 | if [ ${status} -gt 0 ]; then |
---|
| 1187 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1188 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 1189 | [ -f ${2} ] && ls -l ${2} |
---|
| 1190 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
| 1191 | sleep $DELAI |
---|
| 1192 | else |
---|
| 1193 | break |
---|
| 1194 | fi |
---|
| 1195 | (( i = i + 1 )) |
---|
| 1196 | done |
---|
| 1197 | fi |
---|
| 1198 | |
---|
| 1199 | if [ ${status} -gt 0 ] ; then |
---|
[664] | 1200 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
[811] | 1201 | [ -f ${2} ] && ls -l ${2} |
---|
| 1202 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[664] | 1203 | cat out_rsync |
---|
| 1204 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1205 | else |
---|
[811] | 1206 | |
---|
| 1207 | if [ X${JobType} = XRUN ] ; then |
---|
| 1208 | if [ X${3} = X ] ; then |
---|
| 1209 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1210 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1211 | fi |
---|
| 1212 | fi |
---|
| 1213 | |
---|
[664] | 1214 | \rm out_rsync |
---|
| 1215 | fi |
---|
| 1216 | else |
---|
| 1217 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1218 | fi |
---|
| 1219 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1220 | return 0 |
---|
| 1221 | } |
---|
| 1222 | |
---|
| 1223 | #D-#================================================== |
---|
[2] | 1224 | #D-function IGCM_sys_Get |
---|
| 1225 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1226 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1227 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1228 | function IGCM_sys_Get { |
---|
[664] | 1229 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[2] | 1230 | |
---|
[811] | 1231 | typeset DEST status dm_liste |
---|
[2] | 1232 | |
---|
[664] | 1233 | if ( $DEBUG_sys ) ; then |
---|
| 1234 | echo "IGCM_sys_Get :" $@ |
---|
| 1235 | fi |
---|
| 1236 | if [ $DRYRUN -le 2 ]; then |
---|
| 1237 | if [ X${1} = X'/l' ] ; then |
---|
[717] | 1238 | # test if the first file is present in the old computation : |
---|
[664] | 1239 | eval set +A dm_liste \${${2}} |
---|
| 1240 | else |
---|
| 1241 | dm_liste=${1} |
---|
[2] | 1242 | fi |
---|
[664] | 1243 | eval DEST=\${${#}} |
---|
[2] | 1244 | |
---|
[800] | 1245 | # test if the (first) file is present in the old computation : |
---|
[664] | 1246 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
[811] | 1247 | status=$? |
---|
| 1248 | if [ ${status} -gt 0 ] ; then |
---|
[664] | 1249 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1250 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[811] | 1251 | return |
---|
[664] | 1252 | fi |
---|
[2] | 1253 | |
---|
[811] | 1254 | #USUAL WAY |
---|
| 1255 | \cp ${dm_liste[*]} ${DEST} > out_rsync 2>&1 |
---|
| 1256 | status=$? |
---|
[2] | 1257 | |
---|
[811] | 1258 | if [ ${status} -gt 0 ] ; then |
---|
| 1259 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status}" |
---|
[664] | 1260 | cat out_rsync |
---|
| 1261 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[2] | 1262 | else |
---|
[664] | 1263 | \rm out_rsync |
---|
[2] | 1264 | fi |
---|
[664] | 1265 | else |
---|
| 1266 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1267 | fi |
---|
| 1268 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[2] | 1269 | } |
---|
| 1270 | |
---|
| 1271 | #D-#================================================== |
---|
[664] | 1272 | #D-function IGCM_sys_GetBuffer |
---|
| 1273 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1274 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1275 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1276 | function IGCM_sys_GetBuffer { |
---|
| 1277 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1278 | |
---|
[811] | 1279 | typeset DEST buf_liste target file_work |
---|
| 1280 | typeset NB_ESSAI DELAI status i |
---|
[664] | 1281 | |
---|
| 1282 | if ( $DEBUG_sys ) ; then |
---|
| 1283 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1284 | fi |
---|
[811] | 1285 | |
---|
| 1286 | # number of tentative |
---|
| 1287 | NB_ESSAI=3 |
---|
| 1288 | # time delay between tentative |
---|
| 1289 | DELAI=2 |
---|
| 1290 | |
---|
[664] | 1291 | if [ $DRYRUN -le 2 ]; then |
---|
| 1292 | if [ X${1} = X'/l' ] ; then |
---|
| 1293 | # test if the first file is present in the old computation : |
---|
| 1294 | eval set +A buf_liste \${${2}} |
---|
| 1295 | else |
---|
| 1296 | eval set +A buf_liste ${1} |
---|
| 1297 | fi |
---|
| 1298 | eval DEST=\${${#}} |
---|
| 1299 | |
---|
| 1300 | #USUAL WAY |
---|
| 1301 | if [ X${1} = X'/l' ] ; then |
---|
| 1302 | for target in ${buf_liste[*]} ; do |
---|
| 1303 | local_file=$( basename ${target} ) |
---|
[811] | 1304 | i=0 |
---|
| 1305 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1306 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1307 | status=$? |
---|
| 1308 | if [ ${status} -gt 0 ]; then |
---|
| 1309 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1310 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1311 | sleep $DELAI |
---|
| 1312 | else |
---|
| 1313 | break |
---|
| 1314 | fi |
---|
| 1315 | (( i = i + 1 )) |
---|
| 1316 | done |
---|
| 1317 | if [ ${status} -gt 0 ] ; then |
---|
| 1318 | echo "IGCM_sys_Get : error" |
---|
| 1319 | cat out_rsync |
---|
| 1320 | \rm out_rsync |
---|
| 1321 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1322 | else |
---|
| 1323 | \rm out_rsync |
---|
| 1324 | fi |
---|
[664] | 1325 | done |
---|
| 1326 | else |
---|
[811] | 1327 | i=0 |
---|
| 1328 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1329 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1330 | status=$? |
---|
| 1331 | if [ ${status} -gt 0 ]; then |
---|
| 1332 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1333 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1334 | sleep $DELAI |
---|
| 1335 | else |
---|
| 1336 | break |
---|
| 1337 | fi |
---|
| 1338 | (( i = i + 1 )) |
---|
| 1339 | done |
---|
| 1340 | if [ ${status} -gt 0 ] ; then |
---|
| 1341 | echo "IGCM_sys_Get : error" |
---|
| 1342 | cat out_rsync |
---|
| 1343 | \rm out_rsync |
---|
| 1344 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1345 | else |
---|
| 1346 | \rm out_rsync |
---|
| 1347 | fi |
---|
[664] | 1348 | fi |
---|
| 1349 | else |
---|
| 1350 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1351 | fi |
---|
| 1352 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1353 | } |
---|
| 1354 | |
---|
| 1355 | #D-#================================================== |
---|
| 1356 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1357 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1358 | #D-* Examples: |
---|
| 1359 | #D- |
---|
| 1360 | function IGCM_sys_GetDate_FichWork { |
---|
| 1361 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1362 | if ( $DEBUG_sys ) ; then |
---|
| 1363 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1364 | fi |
---|
| 1365 | typeset dateF |
---|
| 1366 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1367 | eval ${2}=${dateF[5]} |
---|
| 1368 | |
---|
[800] | 1369 | # donne la date filesys d'un fichier sur la machine work |
---|
[664] | 1370 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1371 | } |
---|
| 1372 | |
---|
| 1373 | #D-#================================================== |
---|
| 1374 | #D-function IGCM_sys_GetDate_FichArchive |
---|
| 1375 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
| 1376 | #D-* Examples: |
---|
| 1377 | #D- |
---|
| 1378 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1379 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1380 | if ( $DEBUG_sys ) ; then |
---|
| 1381 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1382 | fi |
---|
| 1383 | typeset dateF |
---|
| 1384 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1385 | eval ${2}=${dateF[5]} |
---|
| 1386 | |
---|
| 1387 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1388 | } |
---|
| 1389 | |
---|
| 1390 | #D-#================================================== |
---|
[343] | 1391 | #D-function IGCM_sys_Dods_Rm |
---|
[717] | 1392 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
[343] | 1393 | #D-* Examples: |
---|
| 1394 | #D- |
---|
| 1395 | function IGCM_sys_Dods_Rm { |
---|
[664] | 1396 | if ( $DEBUG_sys ) ; then |
---|
| 1397 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1398 | fi |
---|
| 1399 | return 0 |
---|
[343] | 1400 | } |
---|
| 1401 | |
---|
| 1402 | #D-#================================================== |
---|
| 1403 | #D-function IGCM_sys_Dods_Cp |
---|
[811] | 1404 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
[343] | 1405 | #D-* Examples: |
---|
| 1406 | #D- |
---|
| 1407 | function IGCM_sys_Dods_Cp { |
---|
[664] | 1408 | if ( $DEBUG_sys ) ; then |
---|
| 1409 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1410 | fi |
---|
| 1411 | return 0 |
---|
[343] | 1412 | } |
---|
| 1413 | |
---|
| 1414 | #D-#================================================== |
---|
[2] | 1415 | #D-function IGCM_sys_Put_Dods |
---|
[811] | 1416 | #D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. Dummy function here |
---|
[2] | 1417 | #D-* Examples: |
---|
| 1418 | #D- |
---|
| 1419 | function IGCM_sys_Put_Dods { |
---|
[664] | 1420 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1421 | if ( $DEBUG_sys ) ; then |
---|
| 1422 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1423 | fi |
---|
| 1424 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[2] | 1425 | } |
---|
| 1426 | |
---|
[664] | 1427 | ############################################################## |
---|
| 1428 | # REBUILD OPERATOR |
---|
[2] | 1429 | |
---|
[811] | 1430 | #D-#================================================== |
---|
| 1431 | #D-function IGCM_sys_rebuild |
---|
| 1432 | #D-* Purpose: rebuild parallel files |
---|
| 1433 | #D-* Examples: |
---|
| 1434 | #D- |
---|
[664] | 1435 | function IGCM_sys_rebuild { |
---|
| 1436 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1437 | if ( $DEBUG_sys ) ; then |
---|
| 1438 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1439 | fi |
---|
[811] | 1440 | |
---|
| 1441 | typeset NB_ESSAI DELAI status i firstArg |
---|
| 1442 | # number of tentative |
---|
| 1443 | NB_ESSAI=3 |
---|
| 1444 | # time delay between tentative |
---|
| 1445 | DELAI=2 |
---|
| 1446 | |
---|
| 1447 | i=0 |
---|
| 1448 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1449 | rebuild -f -o $@ > out_rsync 2>&1 |
---|
| 1450 | status=$? |
---|
| 1451 | if [ ${status} -gt 0 ] ; then |
---|
| 1452 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1453 | cat out_rsync |
---|
| 1454 | \rm out_rsync |
---|
| 1455 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1456 | firstArg=${1} |
---|
| 1457 | \rm ${firstArg} |
---|
| 1458 | sleep $DELAI |
---|
| 1459 | else |
---|
| 1460 | \rm out_rsync |
---|
| 1461 | break |
---|
| 1462 | fi |
---|
| 1463 | (( i = i + 1 )) |
---|
| 1464 | done |
---|
| 1465 | |
---|
| 1466 | if [ ${status} -gt 0 ] ; then |
---|
| 1467 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
[664] | 1468 | IGCM_debug_Exit "rebuild" |
---|
| 1469 | fi |
---|
| 1470 | |
---|
| 1471 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[2] | 1472 | } |
---|
| 1473 | |
---|
[811] | 1474 | #D-#================================================== |
---|
| 1475 | #D-function IGCM_sys_rebuild_station |
---|
| 1476 | #D-* Purpose: rebuild parallel files describing station |
---|
| 1477 | #D-* Examples: |
---|
| 1478 | #D- |
---|
[697] | 1479 | function IGCM_sys_rebuild_station { |
---|
| 1480 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1481 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1482 | if ( $DEBUG_sys ) ; then |
---|
| 1483 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1484 | fi |
---|
| 1485 | list_opt=$@ |
---|
| 1486 | |
---|
[800] | 1487 | # Invert Axis : t,x -> x,t |
---|
[697] | 1488 | # t,pres,x -> x,t,pres |
---|
| 1489 | # So that we can concatenate along x |
---|
| 1490 | i=0 |
---|
| 1491 | for file_in in ${list_opt} ; do |
---|
| 1492 | (( i = i + 1)) |
---|
| 1493 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1494 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1495 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1496 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1497 | done |
---|
| 1498 | |
---|
| 1499 | # Concatenate |
---|
| 1500 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1501 | |
---|
| 1502 | # Re-ivert file |
---|
| 1503 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1504 | |
---|
| 1505 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1506 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1507 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1508 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1509 | # BEGIN reordering |
---|
| 1510 | |
---|
| 1511 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1512 | # We isolate this in the code below: |
---|
| 1513 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1514 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1515 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1516 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1517 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1518 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1519 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1520 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1521 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1522 | # typeset -Z4 j4 |
---|
| 1523 | # typeset -Z3 j3 |
---|
| 1524 | |
---|
| 1525 | # unset list_opt |
---|
| 1526 | # set +A list_opt $@ |
---|
| 1527 | |
---|
| 1528 | # Filename after rebuild |
---|
| 1529 | # file_out=${list_opt[0]} |
---|
| 1530 | # Prefix of output files |
---|
| 1531 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1532 | # Number of procs |
---|
| 1533 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1534 | |
---|
| 1535 | # iProc=0 |
---|
| 1536 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1537 | # Array containing Station as a number |
---|
| 1538 | # unset proc_stn |
---|
| 1539 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1540 | # Number of stations produced by processor proc |
---|
| 1541 | # stationLast=${#proc_stn[*]} |
---|
| 1542 | # Proc number on 4 digits |
---|
| 1543 | # j4=${iProc} |
---|
| 1544 | # Init |
---|
| 1545 | # iStation=0 |
---|
| 1546 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1547 | # Station number on 3 digits |
---|
| 1548 | # j3=${proc_stn[${iStation}]} |
---|
| 1549 | # Extract station |
---|
[800] | 1550 | # Invert Axis : t,x -> x,t |
---|
[697] | 1551 | # t,pres,x -> x,t,pres |
---|
| 1552 | # So that we can concatenate along x |
---|
| 1553 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1554 | # (( iStation = iStation + 1 )) |
---|
| 1555 | # done |
---|
| 1556 | # (( iProc = iProc + 1 )) |
---|
| 1557 | # done |
---|
| 1558 | |
---|
| 1559 | # Concatenate all station along x |
---|
| 1560 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1561 | |
---|
| 1562 | # Re-invert file |
---|
| 1563 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1564 | |
---|
| 1565 | # END reordering |
---|
| 1566 | |
---|
| 1567 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1568 | } |
---|
| 1569 | |
---|
[664] | 1570 | ############################################################ |
---|
| 1571 | # Activate Running Environnment Variables |
---|
| 1572 | |
---|
[811] | 1573 | #D-#================================================== |
---|
| 1574 | #D-function IGCM_sys_desactiv_variables |
---|
| 1575 | #D-* Purpose: set environement variables prior to execution |
---|
| 1576 | #D-* Examples: |
---|
| 1577 | #D- |
---|
[664] | 1578 | function IGCM_sys_activ_variables { |
---|
| 1579 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1580 | if ( $DEBUG_sys ) ; then |
---|
| 1581 | echo "IGCM_sys_activ_variables" |
---|
| 1582 | fi |
---|
[811] | 1583 | |
---|
| 1584 | # -------------------------------------------------------------------- |
---|
| 1585 | #D- MPI specifications |
---|
| 1586 | # -------------------------------------------------------------------- |
---|
| 1587 | |
---|
| 1588 | # -------------------------------------------------------------------- |
---|
| 1589 | #D- Other specifications |
---|
| 1590 | # -------------------------------------------------------------------- |
---|
| 1591 | |
---|
[664] | 1592 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[2] | 1593 | } |
---|
| 1594 | |
---|
[664] | 1595 | ############################################################ |
---|
| 1596 | # Desactivate Running Environnment Variables |
---|
[2] | 1597 | |
---|
[811] | 1598 | #D-#================================================== |
---|
| 1599 | #D-function IGCM_sys_desactiv_variables |
---|
| 1600 | #D-* Purpose: unset environement variables after execution |
---|
| 1601 | #D-* Examples: |
---|
| 1602 | #D- |
---|
[664] | 1603 | function IGCM_sys_desactiv_variables { |
---|
| 1604 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1605 | if ( $DEBUG_sys ) ; then |
---|
| 1606 | echo "IGCM_sys_desactiv_variables" |
---|
| 1607 | fi |
---|
[811] | 1608 | # -------------------------------------------------------------------- |
---|
| 1609 | #D- MPI specifications |
---|
| 1610 | # -------------------------------------------------------------------- |
---|
| 1611 | |
---|
| 1612 | # -------------------------------------------------------------------- |
---|
| 1613 | #D- Other specifications |
---|
| 1614 | # -------------------------------------------------------------------- |
---|
| 1615 | |
---|
[664] | 1616 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1617 | } |
---|
| 1618 | |
---|
| 1619 | ############################################################ |
---|
[800] | 1620 | # Build MPI/OMP scripts run file (dummy function) |
---|
[664] | 1621 | |
---|
[811] | 1622 | #D-#================================================== |
---|
| 1623 | #D-function IGCM_sys_build_run_file |
---|
| 1624 | #D-* Purpose: build run file (deprecated) |
---|
| 1625 | #D-* Examples: |
---|
| 1626 | #D- |
---|
[664] | 1627 | function IGCM_sys_build_run_file { |
---|
| 1628 | |
---|
| 1629 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
| 1630 | |
---|
| 1631 | } |
---|
| 1632 | |
---|
| 1633 | ############################################################ |
---|
| 1634 | # Build MPI/OMP scripts |
---|
[811] | 1635 | |
---|
| 1636 | #D-#================================================== |
---|
| 1637 | #D-function IGCM_sys_build_execution_scripts |
---|
| 1638 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
| 1639 | #D-* Examples: |
---|
| 1640 | #D- |
---|
[664] | 1641 | function IGCM_sys_build_execution_scripts |
---|
| 1642 | { |
---|
| 1643 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1644 | if ( $DEBUG_sys ) ; then |
---|
| 1645 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1646 | fi |
---|
| 1647 | typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut |
---|
| 1648 | typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc |
---|
| 1649 | typeset num_corempi nombre_restant_node nombre_restant_comp |
---|
| 1650 | |
---|
| 1651 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
[811] | 1652 | IGCM_debug_Exit "IGCM_sys_default build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
[664] | 1653 | fi |
---|
| 1654 | |
---|
| 1655 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1656 | |
---|
| 1657 | if [ -f run_file ] ; then |
---|
| 1658 | IGCM_sys_Rm -f run_file |
---|
[2] | 1659 | fi |
---|
[664] | 1660 | touch run_file |
---|
| 1661 | |
---|
| 1662 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1663 | |
---|
| 1664 | # Hosts treatment |
---|
| 1665 | |
---|
| 1666 | ${HOST_MPIRUN_COMMAND} hostname | sort | uniq > hosts.tmp |
---|
| 1667 | |
---|
| 1668 | i=0 |
---|
| 1669 | rm -f hosts |
---|
| 1670 | IGCM_debug_Print 1 "sys $( hostname ), Hosts avaible :" |
---|
| 1671 | for nodes in `cat hosts.tmp` ; do |
---|
| 1672 | host[$i]=$nodes |
---|
| 1673 | echo "${host[$i]} slots=1 max_slots=1" >> hosts |
---|
| 1674 | IGCM_debug_Print 1 ${host[$i]} |
---|
| 1675 | i=$((i+1)) |
---|
| 1676 | done |
---|
| 1677 | rm -f hosts.tmp |
---|
| 1678 | |
---|
| 1679 | listnodes=${host[*]} |
---|
| 1680 | |
---|
| 1681 | EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts" |
---|
| 1682 | |
---|
| 1683 | # Initialisation |
---|
| 1684 | |
---|
| 1685 | init_node=y |
---|
| 1686 | node_num_current=0 |
---|
| 1687 | start_num=0 |
---|
| 1688 | init_exec=n |
---|
| 1689 | |
---|
| 1690 | # Test : if oasis is there, we put it at the first position |
---|
| 1691 | |
---|
| 1692 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1693 | |
---|
| 1694 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1695 | |
---|
| 1696 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1697 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1698 | |
---|
| 1699 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1700 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1701 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1702 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1703 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1704 | echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 1705 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1706 | |
---|
| 1707 | init_node=n |
---|
| 1708 | |
---|
| 1709 | (( nombre_restant_node = NUM_COREPERNODE - 1 )) |
---|
| 1710 | node_num_current=0 |
---|
| 1711 | node_current=${host[${node_num_current}]} |
---|
| 1712 | |
---|
| 1713 | EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh" |
---|
| 1714 | |
---|
| 1715 | init_exec=y |
---|
| 1716 | start_num=1 |
---|
| 1717 | |
---|
| 1718 | fi |
---|
| 1719 | |
---|
| 1720 | done |
---|
| 1721 | |
---|
| 1722 | # Then loop on the components (except for oasis) |
---|
| 1723 | |
---|
| 1724 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1725 | |
---|
| 1726 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1727 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1728 | |
---|
| 1729 | # Only if we really have an executable for the component : |
---|
| 1730 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1731 | |
---|
| 1732 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1733 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1734 | |
---|
| 1735 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1736 | # echo "set -vx" >> script_${ExeNameOut}.ksh |
---|
| 1737 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1738 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1739 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1740 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1741 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 1742 | echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh |
---|
| 1743 | echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh |
---|
| 1744 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1745 | |
---|
| 1746 | node_num=0 |
---|
| 1747 | |
---|
| 1748 | # We define the number of MPI process to be assigned for the component |
---|
| 1749 | |
---|
| 1750 | nombre_restant_comp=${comp_proc_mpi_loc} |
---|
| 1751 | |
---|
| 1752 | # Loop on the allocated nodes |
---|
| 1753 | |
---|
| 1754 | for node in ${listnodes} ; do |
---|
| 1755 | |
---|
| 1756 | # We go to the current node |
---|
| 1757 | if [ ${node_num} = ${node_num_current} ] ; then |
---|
| 1758 | |
---|
| 1759 | node_current=${host[${node_num_current}]} |
---|
| 1760 | |
---|
| 1761 | # If first time on the node : initialisation |
---|
| 1762 | |
---|
| 1763 | if [ ${init_node} = y ] ; then |
---|
| 1764 | nombre_restant_node=${NUM_COREPERNODE} |
---|
| 1765 | fi |
---|
| 1766 | |
---|
| 1767 | # Test on the number of OMP threads |
---|
| 1768 | |
---|
| 1769 | if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then |
---|
| 1770 | (( node_num = node_num + 1 )) |
---|
| 1771 | node_num_current=${node_num} |
---|
| 1772 | init_node=y |
---|
| 1773 | continue |
---|
| 1774 | fi |
---|
| 1775 | |
---|
| 1776 | # Number of MPI process to assign |
---|
| 1777 | |
---|
| 1778 | (( num_corempi = nombre_restant_node / comp_proc_omp_loc )) |
---|
| 1779 | |
---|
| 1780 | if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then |
---|
| 1781 | num_corempi=${nombre_restant_comp} |
---|
| 1782 | fi |
---|
| 1783 | |
---|
| 1784 | (( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc )) |
---|
| 1785 | (( nombre_restant_comp = nombre_restant_comp - num_corempi )) |
---|
| 1786 | |
---|
| 1787 | if [ ${init_exec} = y ] ; then |
---|
| 1788 | EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
| 1789 | else |
---|
| 1790 | EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
| 1791 | init_exec=y |
---|
| 1792 | fi |
---|
| 1793 | |
---|
| 1794 | (( start_num = num_corempi + start_num )) |
---|
| 1795 | |
---|
| 1796 | else |
---|
| 1797 | |
---|
| 1798 | (( node_num = node_num + 1 )) |
---|
| 1799 | continue |
---|
| 1800 | fi |
---|
| 1801 | |
---|
| 1802 | # Test on the number of core/process remaining on the node/component |
---|
| 1803 | |
---|
| 1804 | if [ ${nombre_restant_node} = 0 ] ; then |
---|
| 1805 | (( node_num = node_num + 1 )) |
---|
| 1806 | node_num_current=${node_num} |
---|
| 1807 | init_node=y |
---|
| 1808 | |
---|
| 1809 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 1810 | break 1 |
---|
| 1811 | fi |
---|
| 1812 | else |
---|
| 1813 | |
---|
| 1814 | node_num_current=${node_num} |
---|
| 1815 | init_node=n |
---|
| 1816 | |
---|
| 1817 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 1818 | break 1 |
---|
| 1819 | fi |
---|
| 1820 | fi |
---|
| 1821 | done |
---|
| 1822 | fi |
---|
| 1823 | done |
---|
| 1824 | |
---|
| 1825 | else |
---|
| 1826 | |
---|
| 1827 | # Then first loop on the components for the coupler ie oasis |
---|
| 1828 | |
---|
| 1829 | ## the coupler ie oasis must be the first one |
---|
| 1830 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1831 | |
---|
| 1832 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1833 | |
---|
| 1834 | # for CPL component only |
---|
| 1835 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1836 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1837 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file |
---|
| 1838 | fi |
---|
| 1839 | done |
---|
| 1840 | |
---|
| 1841 | # Then second loop on the components |
---|
| 1842 | |
---|
| 1843 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1844 | |
---|
| 1845 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1846 | |
---|
| 1847 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1848 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1849 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1850 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 1851 | fi |
---|
| 1852 | done |
---|
| 1853 | IGCM_sys_Chmod u+x run_file |
---|
| 1854 | |
---|
| 1855 | EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file" |
---|
| 1856 | |
---|
[2] | 1857 | fi |
---|
| 1858 | |
---|
[664] | 1859 | else # Only one executable. launch it. |
---|
| 1860 | |
---|
| 1861 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1862 | |
---|
| 1863 | # Only if we really have an executable for the component : |
---|
| 1864 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1865 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
| 1866 | |
---|
| 1867 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1868 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1869 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1870 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1871 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 1872 | fi |
---|
| 1873 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1874 | # Default : mpirun used if nb_proc gt 1 |
---|
| 1875 | # pour sortie out/err par process |
---|
| 1876 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh |
---|
| 1877 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1878 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1879 | EXECUTION="${HOST_MPIRUN_COMMAND} ./script_${ExeNameOut}.ksh" |
---|
| 1880 | else |
---|
| 1881 | # Default : mpirun is NOT used if nb_proc eq 1 |
---|
| 1882 | # pour sortie out/err par process |
---|
| 1883 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 1884 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1885 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1886 | EXECUTION="time ./script_${ExeNameOut}.ksh" |
---|
| 1887 | fi |
---|
| 1888 | fi |
---|
| 1889 | done |
---|
| 1890 | |
---|
| 1891 | fi |
---|
| 1892 | |
---|
[811] | 1893 | IGCM_debug_Print 1 "sys $( hostname ) : execution command is" |
---|
| 1894 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[664] | 1895 | |
---|
| 1896 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[2] | 1897 | } |
---|
| 1898 | |
---|
[664] | 1899 | ############################################################ |
---|
[811] | 1900 | # Check of space available on temporary filesytems. Dummy function here |
---|
| 1901 | |
---|
| 1902 | #D-#================================================== |
---|
| 1903 | #D-function IGCM_sys_check_quota. Dummy call here |
---|
| 1904 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
| 1905 | #D-* Examples: |
---|
| 1906 | #D- |
---|
[664] | 1907 | function IGCM_sys_check_quota { |
---|
| 1908 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1909 | if ( $DEBUG_sys ) ; then |
---|
| 1910 | echo "IGCM_sys_check_quota" |
---|
| 1911 | fi |
---|
| 1912 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1913 | } |
---|
| 1914 | |
---|
[811] | 1915 | #D-#================================================== |
---|
| 1916 | #D-function IGCM_sys_CountJobInQueue |
---|
| 1917 | #D-* Purpose: Check if job_name is currently |
---|
| 1918 | #D- running or in queue |
---|
| 1919 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 1920 | #D- |
---|
| 1921 | function IGCM_sys_CountJobInQueue { |
---|
| 1922 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 1923 | if ( $DEBUG_sys ) ; then |
---|
| 1924 | echo "IGCM_sys_CountJobInQueue" |
---|
| 1925 | fi |
---|
| 1926 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 1927 | } |
---|
| 1928 | |
---|
[2] | 1929 | ############################################################## |
---|
| 1930 | # NCO OPERATOR |
---|
| 1931 | |
---|
[811] | 1932 | #D-#================================================== |
---|
| 1933 | #D-function IGCM_sys_ncap2 |
---|
| 1934 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
| 1935 | #D-* Examples: |
---|
| 1936 | #D- |
---|
[377] | 1937 | function IGCM_sys_ncap2 { |
---|
[664] | 1938 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1939 | if ( $DEBUG_sys ) ; then |
---|
| 1940 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1941 | fi |
---|
[714] | 1942 | |
---|
| 1943 | typeset NB_ESSAI DELAI status i |
---|
| 1944 | # number of tentative |
---|
| 1945 | NB_ESSAI=3 |
---|
| 1946 | # time delay between tentative |
---|
| 1947 | DELAI=2 |
---|
| 1948 | |
---|
| 1949 | i=0 |
---|
| 1950 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1951 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 1952 | status=$? |
---|
| 1953 | if [ ${status} -gt 0 ] ; then |
---|
| 1954 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 1955 | cat out_rsync |
---|
| 1956 | \rm out_rsync |
---|
| 1957 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1958 | sleep $DELAI |
---|
[714] | 1959 | else |
---|
| 1960 | \rm out_rsync |
---|
| 1961 | break |
---|
| 1962 | fi |
---|
| 1963 | (( i = i + 1 )) |
---|
| 1964 | done |
---|
| 1965 | |
---|
| 1966 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 1967 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 1968 | IGCM_debug_Exit "ncap2" |
---|
[664] | 1969 | fi |
---|
[2] | 1970 | |
---|
[664] | 1971 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
[2] | 1972 | } |
---|
| 1973 | |
---|
[811] | 1974 | #D-#================================================== |
---|
| 1975 | #D-function IGCM_sys_ncatted |
---|
| 1976 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
| 1977 | #D-* Examples: |
---|
| 1978 | #D- |
---|
[375] | 1979 | function IGCM_sys_ncatted { |
---|
[664] | 1980 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1981 | if ( $DEBUG_sys ) ; then |
---|
| 1982 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1983 | fi |
---|
[714] | 1984 | |
---|
| 1985 | typeset NB_ESSAI DELAI status i |
---|
| 1986 | # number of tentative |
---|
| 1987 | NB_ESSAI=3 |
---|
| 1988 | # time delay between tentative |
---|
| 1989 | DELAI=2 |
---|
| 1990 | |
---|
| 1991 | i=0 |
---|
| 1992 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1993 | ncatted "$@" > out_rsync 2>&1 |
---|
| 1994 | status=$? |
---|
| 1995 | if [ ${status} -gt 0 ] ; then |
---|
| 1996 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 1997 | cat out_rsync |
---|
| 1998 | \rm out_rsync |
---|
| 1999 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2000 | sleep $DELAI |
---|
[714] | 2001 | else |
---|
| 2002 | \rm out_rsync |
---|
| 2003 | break |
---|
| 2004 | fi |
---|
| 2005 | (( i = i + 1 )) |
---|
| 2006 | done |
---|
| 2007 | |
---|
| 2008 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2009 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 2010 | IGCM_debug_Exit "ncatted" |
---|
[664] | 2011 | fi |
---|
[2] | 2012 | |
---|
[664] | 2013 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[375] | 2014 | } |
---|
[2] | 2015 | |
---|
[811] | 2016 | #D-#================================================== |
---|
| 2017 | #D-function IGCM_sys_ncbo |
---|
| 2018 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
| 2019 | #D-* Examples: |
---|
| 2020 | #D- |
---|
[2] | 2021 | function IGCM_sys_ncbo { |
---|
[664] | 2022 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 2023 | if ( $DEBUG_sys ) ; then |
---|
| 2024 | echo "IGCM_sys_ncbo :" $@ |
---|
| 2025 | fi |
---|
[714] | 2026 | |
---|
| 2027 | typeset NB_ESSAI DELAI status i |
---|
| 2028 | # number of tentative |
---|
| 2029 | NB_ESSAI=3 |
---|
| 2030 | # time delay between tentative |
---|
| 2031 | DELAI=2 |
---|
| 2032 | |
---|
| 2033 | i=0 |
---|
| 2034 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2035 | ncbo $@ > out_rsync 2>&1 |
---|
| 2036 | status=$? |
---|
| 2037 | if [ ${status} -gt 0 ] ; then |
---|
| 2038 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 2039 | cat out_rsync |
---|
| 2040 | \rm out_rsync |
---|
| 2041 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2042 | sleep $DELAI |
---|
[714] | 2043 | else |
---|
| 2044 | \rm out_rsync |
---|
| 2045 | break |
---|
| 2046 | fi |
---|
| 2047 | (( i = i + 1 )) |
---|
| 2048 | done |
---|
| 2049 | |
---|
| 2050 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2051 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 2052 | IGCM_debug_Exit "ncbo" |
---|
[664] | 2053 | fi |
---|
[2] | 2054 | |
---|
[664] | 2055 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[2] | 2056 | } |
---|
| 2057 | |
---|
[811] | 2058 | #D-#================================================== |
---|
| 2059 | #D-function IGCM_sys_ncdif |
---|
| 2060 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
| 2061 | #D-* Examples: |
---|
| 2062 | #D- |
---|
[2] | 2063 | function IGCM_sys_ncdiff { |
---|
[664] | 2064 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 2065 | if ( $DEBUG_sys ) ; then |
---|
| 2066 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 2067 | fi |
---|
[714] | 2068 | |
---|
| 2069 | typeset NB_ESSAI DELAI status i |
---|
| 2070 | # number of tentative |
---|
| 2071 | NB_ESSAI=3 |
---|
| 2072 | # time delay between tentative |
---|
| 2073 | DELAI=2 |
---|
| 2074 | |
---|
| 2075 | i=0 |
---|
| 2076 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2077 | ncdiff $@ > out_rsync 2>&1 |
---|
| 2078 | status=$? |
---|
| 2079 | if [ ${status} -gt 0 ] ; then |
---|
| 2080 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 2081 | cat out_rsync |
---|
| 2082 | \rm out_rsync |
---|
| 2083 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2084 | sleep $DELAI |
---|
[714] | 2085 | else |
---|
| 2086 | \rm out_rsync |
---|
| 2087 | break |
---|
| 2088 | fi |
---|
| 2089 | (( i = i + 1 )) |
---|
| 2090 | done |
---|
| 2091 | |
---|
| 2092 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2093 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 2094 | IGCM_debug_Exit "ncdiff" |
---|
[664] | 2095 | fi |
---|
[2] | 2096 | |
---|
[664] | 2097 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[2] | 2098 | } |
---|
| 2099 | |
---|
[811] | 2100 | #D-#================================================== |
---|
| 2101 | #D-function IGCM_sys_ncea |
---|
| 2102 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
| 2103 | #D-* Examples: |
---|
| 2104 | #D- |
---|
[2] | 2105 | function IGCM_sys_ncea { |
---|
[664] | 2106 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 2107 | if ( $DEBUG_sys ) ; then |
---|
| 2108 | echo "IGCM_sys_ncea :" $@ |
---|
| 2109 | fi |
---|
[714] | 2110 | |
---|
| 2111 | typeset NB_ESSAI DELAI status i |
---|
| 2112 | # number of tentative |
---|
| 2113 | NB_ESSAI=3 |
---|
| 2114 | # time delay between tentative |
---|
| 2115 | DELAI=2 |
---|
| 2116 | |
---|
| 2117 | i=0 |
---|
| 2118 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2119 | ncea $@ > out_rsync 2>&1 |
---|
| 2120 | status=$? |
---|
| 2121 | if [ ${status} -gt 0 ] ; then |
---|
| 2122 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 2123 | cat out_rsync |
---|
| 2124 | \rm out_rsync |
---|
| 2125 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2126 | sleep $DELAI |
---|
[714] | 2127 | else |
---|
| 2128 | \rm out_rsync |
---|
| 2129 | break |
---|
| 2130 | fi |
---|
| 2131 | (( i = i + 1 )) |
---|
| 2132 | done |
---|
| 2133 | |
---|
| 2134 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2135 | echo "IGCM_sys_ncea : ncea error" |
---|
| 2136 | IGCM_debug_Exit "ncea" |
---|
[664] | 2137 | fi |
---|
[2] | 2138 | |
---|
[664] | 2139 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[2] | 2140 | } |
---|
| 2141 | |
---|
[811] | 2142 | #D-#================================================== |
---|
| 2143 | #D-function IGCM_sys_ncecat |
---|
| 2144 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
| 2145 | #D-* Examples: |
---|
| 2146 | #D- |
---|
[2] | 2147 | function IGCM_sys_ncecat { |
---|
[664] | 2148 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 2149 | if ( $DEBUG_sys ) ; then |
---|
| 2150 | echo "IGCM_sys_ncecat :" $@ |
---|
| 2151 | fi |
---|
[714] | 2152 | |
---|
| 2153 | typeset NB_ESSAI DELAI status i |
---|
| 2154 | # number of tentative |
---|
| 2155 | NB_ESSAI=3 |
---|
| 2156 | # time delay between tentative |
---|
| 2157 | DELAI=2 |
---|
| 2158 | |
---|
| 2159 | i=0 |
---|
| 2160 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2161 | ncecat $@ > out_rsync 2>&1 |
---|
| 2162 | status=$? |
---|
| 2163 | if [ ${status} -gt 0 ] ; then |
---|
| 2164 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 2165 | cat out_rsync |
---|
| 2166 | \rm out_rsync |
---|
| 2167 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2168 | sleep $DELAI |
---|
[714] | 2169 | else |
---|
| 2170 | \rm out_rsync |
---|
| 2171 | break |
---|
| 2172 | fi |
---|
| 2173 | (( i = i + 1 )) |
---|
| 2174 | done |
---|
| 2175 | |
---|
| 2176 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2177 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 2178 | IGCM_debug_Exit "ncecat" |
---|
[664] | 2179 | fi |
---|
[2] | 2180 | |
---|
[664] | 2181 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[2] | 2182 | } |
---|
| 2183 | |
---|
[811] | 2184 | #D-#================================================== |
---|
| 2185 | #D-function IGCM_sys_ncflint |
---|
| 2186 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
| 2187 | #D-* Examples: |
---|
| 2188 | #D- |
---|
[2] | 2189 | function IGCM_sys_ncflint { |
---|
[664] | 2190 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 2191 | if ( $DEBUG_sys ) ; then |
---|
| 2192 | echo "IGCM_sys_ncflint :" $@ |
---|
| 2193 | fi |
---|
[714] | 2194 | |
---|
| 2195 | typeset NB_ESSAI DELAI status i |
---|
| 2196 | # number of tentative |
---|
| 2197 | NB_ESSAI=3 |
---|
| 2198 | # time delay between tentative |
---|
| 2199 | DELAI=2 |
---|
| 2200 | |
---|
| 2201 | i=0 |
---|
| 2202 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2203 | ncflint $@ > out_rsync 2>&1 |
---|
| 2204 | status=$? |
---|
| 2205 | if [ ${status} -gt 0 ] ; then |
---|
| 2206 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 2207 | cat out_rsync |
---|
| 2208 | \rm out_rsync |
---|
| 2209 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2210 | sleep $DELAI |
---|
[714] | 2211 | else |
---|
| 2212 | \rm out_rsync |
---|
| 2213 | break |
---|
| 2214 | fi |
---|
| 2215 | (( i = i + 1 )) |
---|
| 2216 | done |
---|
| 2217 | |
---|
| 2218 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2219 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2220 | IGCM_debug_Exit "ncflint" |
---|
[664] | 2221 | fi |
---|
[2] | 2222 | |
---|
[664] | 2223 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[2] | 2224 | } |
---|
| 2225 | |
---|
[811] | 2226 | #D-#================================================== |
---|
| 2227 | #D-function IGCM_sys_ncks |
---|
| 2228 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
| 2229 | #D-* Examples: |
---|
| 2230 | #D- |
---|
[2] | 2231 | function IGCM_sys_ncks { |
---|
[664] | 2232 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2233 | if ( $DEBUG_sys ) ; then |
---|
| 2234 | echo "IGCM_sys_ncks :" $@ |
---|
| 2235 | fi |
---|
[714] | 2236 | |
---|
| 2237 | typeset NB_ESSAI DELAI status i |
---|
| 2238 | # number of tentative |
---|
| 2239 | NB_ESSAI=3 |
---|
| 2240 | # time delay between tentative |
---|
| 2241 | DELAI=2 |
---|
| 2242 | |
---|
| 2243 | i=0 |
---|
| 2244 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2245 | ncks $@ > out_rsync 2>&1 |
---|
| 2246 | status=$? |
---|
| 2247 | if [ ${status} -gt 0 ] ; then |
---|
| 2248 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2249 | cat out_rsync |
---|
| 2250 | \rm out_rsync |
---|
| 2251 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2252 | sleep $DELAI |
---|
[714] | 2253 | else |
---|
| 2254 | \rm out_rsync |
---|
| 2255 | break |
---|
| 2256 | fi |
---|
| 2257 | (( i = i + 1 )) |
---|
| 2258 | done |
---|
| 2259 | |
---|
| 2260 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2261 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2262 | IGCM_debug_Exit "ncks" |
---|
[664] | 2263 | fi |
---|
[2] | 2264 | |
---|
[664] | 2265 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[2] | 2266 | } |
---|
| 2267 | |
---|
[811] | 2268 | #D-#================================================== |
---|
| 2269 | #D-function IGCM_sys_ncpdq |
---|
| 2270 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
| 2271 | #D-* Examples: |
---|
| 2272 | #D- |
---|
[2] | 2273 | function IGCM_sys_ncpdq { |
---|
[664] | 2274 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2275 | if ( $DEBUG_sys ) ; then |
---|
| 2276 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2277 | fi |
---|
[714] | 2278 | |
---|
| 2279 | typeset NB_ESSAI DELAI status i |
---|
| 2280 | # number of tentative |
---|
| 2281 | NB_ESSAI=3 |
---|
| 2282 | # time delay between tentative |
---|
| 2283 | DELAI=2 |
---|
| 2284 | |
---|
| 2285 | i=0 |
---|
| 2286 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2287 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2288 | status=$? |
---|
| 2289 | if [ ${status} -gt 0 ] ; then |
---|
| 2290 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2291 | cat out_rsync |
---|
| 2292 | \rm out_rsync |
---|
| 2293 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2294 | sleep $DELAI |
---|
[714] | 2295 | else |
---|
| 2296 | \rm out_rsync |
---|
| 2297 | break |
---|
| 2298 | fi |
---|
| 2299 | (( i = i + 1 )) |
---|
| 2300 | done |
---|
| 2301 | |
---|
| 2302 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2303 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2304 | IGCM_debug_Exit "ncpdq" |
---|
[664] | 2305 | fi |
---|
[2] | 2306 | |
---|
[664] | 2307 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[2] | 2308 | } |
---|
| 2309 | |
---|
[811] | 2310 | #D-#================================================== |
---|
| 2311 | #D-function IGCM_sys_ncra |
---|
| 2312 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
| 2313 | #D-* Examples: |
---|
| 2314 | #D- |
---|
[2] | 2315 | function IGCM_sys_ncra { |
---|
[664] | 2316 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2317 | if ( $DEBUG_sys ) ; then |
---|
| 2318 | echo "IGCM_sys_ncra :" $@ |
---|
| 2319 | fi |
---|
[714] | 2320 | |
---|
| 2321 | typeset NB_ESSAI DELAI status i |
---|
| 2322 | # number of tentative |
---|
| 2323 | NB_ESSAI=3 |
---|
| 2324 | # time delay between tentative |
---|
| 2325 | DELAI=2 |
---|
| 2326 | |
---|
| 2327 | i=0 |
---|
| 2328 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2329 | ncra $@ > out_rsync 2>&1 |
---|
| 2330 | status=$? |
---|
| 2331 | if [ ${status} -gt 0 ] ; then |
---|
| 2332 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2333 | cat out_rsync |
---|
| 2334 | \rm out_rsync |
---|
| 2335 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2336 | sleep $DELAI |
---|
[714] | 2337 | else |
---|
| 2338 | \rm out_rsync |
---|
| 2339 | break |
---|
| 2340 | fi |
---|
| 2341 | (( i = i + 1 )) |
---|
| 2342 | done |
---|
| 2343 | |
---|
| 2344 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2345 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2346 | IGCM_debug_Exit "ncra" |
---|
[664] | 2347 | fi |
---|
[2] | 2348 | |
---|
[664] | 2349 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[2] | 2350 | } |
---|
| 2351 | |
---|
[811] | 2352 | #D-#================================================== |
---|
| 2353 | #D-function IGCM_sys_ncrcat |
---|
| 2354 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
| 2355 | #D-* Examples: |
---|
| 2356 | #D- |
---|
[2] | 2357 | function IGCM_sys_ncrcat { |
---|
[664] | 2358 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2359 | if ( $DEBUG_sys ) ; then |
---|
| 2360 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2361 | fi |
---|
[714] | 2362 | |
---|
[811] | 2363 | typeset NB_ESSAI DELAI status i lastArg |
---|
[714] | 2364 | # number of tentative |
---|
| 2365 | NB_ESSAI=3 |
---|
| 2366 | # time delay between tentative |
---|
| 2367 | DELAI=2 |
---|
| 2368 | |
---|
| 2369 | i=0 |
---|
| 2370 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2371 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2372 | status=$? |
---|
| 2373 | if [ ${status} -gt 0 ] ; then |
---|
| 2374 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2375 | cat out_rsync |
---|
| 2376 | \rm out_rsync |
---|
| 2377 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2378 | sleep $DELAI |
---|
[811] | 2379 | elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then |
---|
| 2380 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
| 2381 | cat out_rsync |
---|
| 2382 | # remove files having corrupted time axis |
---|
| 2383 | eval lastArg=\${$#} |
---|
| 2384 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
| 2385 | \rm ${lastArg} |
---|
| 2386 | \rm out_rsync |
---|
| 2387 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2388 | sleep $DELAI |
---|
[714] | 2389 | else |
---|
| 2390 | \rm out_rsync |
---|
| 2391 | break |
---|
| 2392 | fi |
---|
| 2393 | (( i = i + 1 )) |
---|
| 2394 | done |
---|
| 2395 | |
---|
| 2396 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2397 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2398 | #IGCM_debug_Exit "ncrcat" |
---|
[664] | 2399 | fi |
---|
[2] | 2400 | |
---|
[664] | 2401 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[2] | 2402 | } |
---|
| 2403 | |
---|
[811] | 2404 | #D-#================================================== |
---|
| 2405 | #D-function IGCM_sys_ncrename |
---|
| 2406 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
| 2407 | #D-* Examples: |
---|
| 2408 | #D- |
---|
[2] | 2409 | function IGCM_sys_ncrename { |
---|
[664] | 2410 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2411 | if ( $DEBUG_sys ) ; then |
---|
| 2412 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2413 | fi |
---|
[714] | 2414 | |
---|
| 2415 | typeset NB_ESSAI DELAI status i |
---|
| 2416 | # number of tentative |
---|
| 2417 | NB_ESSAI=3 |
---|
| 2418 | # time delay between tentative |
---|
| 2419 | DELAI=2 |
---|
| 2420 | |
---|
| 2421 | i=0 |
---|
| 2422 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2423 | ncrename $@ > out_rsync 2>&1 |
---|
| 2424 | status=$? |
---|
| 2425 | if [ ${status} -gt 0 ] ; then |
---|
| 2426 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2427 | cat out_rsync |
---|
| 2428 | \rm out_rsync |
---|
| 2429 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2430 | sleep $DELAI |
---|
[714] | 2431 | else |
---|
| 2432 | \rm out_rsync |
---|
| 2433 | break |
---|
| 2434 | fi |
---|
| 2435 | (( i = i + 1 )) |
---|
| 2436 | done |
---|
| 2437 | |
---|
| 2438 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2439 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2440 | IGCM_debug_Exit "ncrename" |
---|
[664] | 2441 | fi |
---|
[2] | 2442 | |
---|
[664] | 2443 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[2] | 2444 | } |
---|
| 2445 | |
---|
[811] | 2446 | #D-#================================================== |
---|
| 2447 | #D-function IGCM_sys_ncwa |
---|
| 2448 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
| 2449 | #D-* Examples: |
---|
| 2450 | #D- |
---|
[2] | 2451 | function IGCM_sys_ncwa { |
---|
[664] | 2452 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2453 | if ( $DEBUG_sys ) ; then |
---|
| 2454 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2455 | fi |
---|
[714] | 2456 | |
---|
| 2457 | typeset NB_ESSAI DELAI status i |
---|
| 2458 | # number of tentative |
---|
| 2459 | NB_ESSAI=3 |
---|
| 2460 | # time delay between tentative |
---|
| 2461 | DELAI=2 |
---|
| 2462 | |
---|
| 2463 | i=0 |
---|
| 2464 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2465 | ncwa $@ > out_rsync 2>&1 |
---|
| 2466 | status=$? |
---|
| 2467 | if [ ${status} -gt 0 ] ; then |
---|
| 2468 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2469 | cat out_rsync |
---|
| 2470 | \rm out_rsync |
---|
| 2471 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2472 | sleep $DELAI |
---|
[714] | 2473 | else |
---|
| 2474 | \rm out_rsync |
---|
| 2475 | break |
---|
| 2476 | fi |
---|
| 2477 | (( i = i + 1 )) |
---|
| 2478 | done |
---|
| 2479 | |
---|
| 2480 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2481 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2482 | IGCM_debug_Exit "ncwa" |
---|
[664] | 2483 | fi |
---|
[2] | 2484 | |
---|
[664] | 2485 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[2] | 2486 | } |
---|
| 2487 | |
---|
[343] | 2488 | ############################################################## |
---|
| 2489 | # CDO OPERATOR |
---|
| 2490 | |
---|
[811] | 2491 | #D-#================================================== |
---|
| 2492 | #D-function IGCM_sys_cdo |
---|
| 2493 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
| 2494 | #D-* Examples: |
---|
| 2495 | #D- |
---|
[343] | 2496 | function IGCM_sys_cdo { |
---|
[664] | 2497 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
[714] | 2498 | if ( $DEBUG_sys ) ; then |
---|
| 2499 | echo "IGCM_sys_cdo :" $@ |
---|
| 2500 | fi |
---|
[343] | 2501 | |
---|
[714] | 2502 | typeset status |
---|
| 2503 | |
---|
| 2504 | \cdo $@ > out_rsync 2>&1 |
---|
| 2505 | status=$? |
---|
| 2506 | if [ ${status} -gt 0 ] ; then |
---|
| 2507 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2508 | cat out_rsync |
---|
| 2509 | \rm out_rsync |
---|
[343] | 2510 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[664] | 2511 | return 1 |
---|
| 2512 | else |
---|
| 2513 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2514 | return 0 |
---|
| 2515 | fi |
---|
[343] | 2516 | |
---|
[664] | 2517 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[2] | 2518 | } |
---|