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source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_curie.ksh @ 828

Last change on this file since 828 was 828, checked in by sdipsl, 11 years ago
Stack file management must be kept in libIGCM_debug
Property svn:keywords set to `Revision Author Date`
File size: 81.7 KB

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1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5	# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#=========================================================
15	# The documentation of this file can be automatically generated
16	# if you use the prefix #D- for comments to be extracted.
17	# Extract with command: cat lib* \| grep "^#D-" \| cut -c "4-"
18	#=========================================================
19
20	#D-#==================================================
21	#D-LibIGCM_sys for Curie
22	#D-#==================================================
23	#D-
24	#D- This ksh library if a layer under some usefull
25	#D-environment variables and shell commands.
26	#D-All those definitions depend on host particularities.
27	#D-It manages a stack mechanism and test validity of operations.
28	#D-All function described bellow must be prefixed by IGCM_sys.
29
30	#====================================================
31	# libIGCM_sys PARAMETERS
32	#====================================================
33
34	#====================================================
35	# set DEBUG_sys to true to output calls of function
36	typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38	#====================================================
39	# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40	typeset -r DRYRUN=${DRYRUN:=0}
41
42	# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43	# -------------------------------------------------------------------------------------
44	# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
45	# \| \| Cp/Exe/param/files \| \| \| \|
46	# \| \| Chmod Qsub \| \| \| \|
47	# -------------------------------------------------------------------------------------
48	# \| 0 \| yes \| yes \| yes \| yes \|
49	# -------------------------------------------------------------------------------------
50	# \| 1 \| yes \| yes \| yes \| no \|
51	# -------------------------------------------------------------------------------------
52	# \| 2 \| yes \| yes \| no \| no \|
53	# -------------------------------------------------------------------------------------
54	# \| 3 \| yes \| no \| no \| no \|
55	# -------------------------------------------------------------------------------------
56
57	#=====================================================
58	# Global Variables :
59	#=====================================================
60	# Language : "fr" or "en"
61	typeset -r MYLANG="fr"
62
63	#=====================================================
64	# Host and user names
65	# $hostname ou hostname
66	typeset HOST=${HOST:=$( hostname )}
67	# $username ou whoami
68	typeset LOGIN=${LOGIN:=$( whoami )}
69	# $hostname of the MASTER job
70	typeset MASTER=curie
71
72	#D-
73	#D-#==================================================
74	#D-Program used in libIGCM
75	#D-#==================================================
76
77	# Submit command
78	typeset SUBMIT=${SUBMIT:=ccc_msub}
79	# rsync with path
80	typeset -r RSYNC=/usr/bin/rsync
81	# RSYNC_opt args to rsync
82	typeset -r RSYNC_opt="-va"
83	# ie storage filesystem
84	typeset -r STOREHOST=${MASTER}
85
86	#====================================================
87	# Source default environment
88	#====================================================
89	##. /etc/profile
90
91	#====================================================
92	# Set environment tools (ferret, nco, cdo)
93	#====================================================
94	if [ X${TaskType} = Xcomputing ] ; then
95	. /ccc/cont003/home/dsm/p86ipsl/.atlas_env_calcul_curie_ksh
96	export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64/bin
97	else
98	. /ccc/cont003/home/dsm/p86ipsl/.atlas_env_post_curie_ksh
99	fi
100
101	#====================================================
102	# Specific for ocean additionnal diagnostic
103	export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
104	export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
105
106	#====================================================
107	# Host specific DIRECTORIES
108	#====================================================
109
110	# ============ CESIUM START ============ #
111
112	#====================================================
113	#- Mirror libIGCM from titane to cesium if needed
114	#ROOTSYS=$( echo ${libIGCM} \| gawk -F"/" '{print $3}' )
115	#if [ ! ${ROOTSYS} = "home" ] ; then
116	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
117	#else
118	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
119	#fi
120
121	#====================================================
122	#- libIGCM_POST
123	#if ( ${MirrorlibIGCM} ) ; then
124	# PATHlibIGCM=$( echo ${libIGCM} \| gawk -F"${LOGIN}/" '{print $2}' \| sed -e "s&/libIGCM&&" )
125	# typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
126	#else
127	# typeset -r libIGCM_POST=${libIGCM}
128	#fi
129
130	# ============ CESIUM END ============ #
131
132	#====================================================
133	#- MirrorlibIGCM for frontend
134	typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
135
136	#====================================================
137	#- libIGCM_POST for frontend
138	typeset -r libIGCM_POST=${libIGCM}
139
140	#====================================================
141	#- R_EXE (==> BIN_DIR = ${MODIPSL}/bin )
142	typeset -r R_EXE="${MODIPSL}/bin"
143
144	#====================================================
145	#- SUBMIT_DIR : submission dir
146	typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}}
147
148	#====================================================
149	#- IN
150	typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
151	typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data}
152
153	#====================================================
154	#- ARCHIVE (dedicated to large files)
155	typeset ARCHIVE=${CCCSTOREDIR}
156
157	#====================================================
158	#- STORAGE (dedicated to small/medium files)
159	typeset STORAGE=${CCCWORKDIR}
160
161	#====================================================
162	#- R_OUT
163	typeset R_OUT=${ARCHIVE}/IGCM_OUT
164
165	#====================================================
166	#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
167	typeset R_FIG=${STORAGE}/IGCM_OUT
168
169	#====================================================
170	#- R_BUF (ONLY FOR double copy an scratch)
171	typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
172
173	#====================================================
174	#- RUN_DIR_PATH : Temporary working directory (=> TMP)
175	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}/${$}}
176
177	#====================================================
178	#- HOST_MPIRUN_COMMAND
179	typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun -E-K1"}
180
181	#====================================================
182	#- Max number of arguments passed to nco operator or demigration command
183	UNIX_MAX_LIMIT=360
184
185	#====================================================
186	#- set PackDefault true on curie
187	PackDefault=true
188
189	#====================================================
190	#- Number of core per node (max number of OpenMP task)
191	NUM_COREPERNODE=8
192
193	#====================================================
194	#- Default number of MPI task for IPSL coupled model
195	#- required for backward compatibility
196	#-
197	DEFAULT_NUM_PROC_OCE=5
198	DEFAULT_NUM_PROC_CPL=1
199	(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
200	DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
201
202	#D-#==================================================
203	#D-function IGCM_sys_ChangeArchive
204	#D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR
205	#D-* Examples:
206	#D-
207	function IGCM_sys_ChangeArchive {
208	IGCM_debug_PushStack "IGCM_sys_ChangeArchive"
209
210	R_OUT=${SCRATCHDIR}/IGCM_OUT
211	R_FIG=${SCRATCHDIR}/IGCM_OUT
212
213	IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}"
214	IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}"
215
216	IGCM_debug_PopStack "IGCM_sys_ChangeArchive"
217	}
218
219	#D-#==================================================
220	#D-function IGCM_sys_RshMaster
221	#D-* Purpose: Connection to frontend machine.
222	#D-* Examples:
223	#D-
224	function IGCM_sys_RshMaster {
225	IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
226	/bin/ksh <<-EOF
227	export libIGCM=${libIGCM}
228	export DEBUG_debug=${DEBUG_debug}
229	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
230	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
231	${@}
232	EOF
233	if [ $? -gt 0 ] ; then
234	echo "IGCM_sys_RshMaster : erreur."
235	IGCM_debug_Exit "IGCM_sys_RshMaster"
236	fi
237	IGCM_debug_PopStack "IGCM_sys_RshMaster"
238	}
239
240	#D-#==================================================
241	#D-function IGCM_sys_RshArchive
242	#D-* Purpose: Archive rsh command
243	#D-* Examples:
244	#D-
245	function IGCM_sys_RshArchive {
246	IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
247	/bin/ksh <<-EOF
248	${@}
249	EOF
250	status=$?
251	if [ ${status} -gt 0 ] ; then
252	IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}"
253	IGCM_debug_Exit "IGCM_sys_RshArchive"
254	fi
255	IGCM_debug_PopStack "IGCM_sys_RshArchive"
256	}
257
258	#D-#==================================================
259	#D-function IGCM_sys_RshPost
260	#D-* Purpose: Post-process rsh command
261	#D-* Examples:
262	#D-
263	function IGCM_sys_RshPost {
264	IGCM_debug_PushStack "IGCM_sys_RshPost" $@
265	if ( $DEBUG_sys ) ; then
266	echo "IGCM_sys_RshPost :" $@
267	fi
268	# keep standard input (stdin) for the loop onto temporary file
269	cat >/tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME}
270
271	/bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME}
272	if [ $? -gt 0 ] ; then
273	echo "IGCM_sys_RshPost : erreur."
274	IGCM_debug_Exit "IGCM_sys_RshPost"
275	fi
276	# delete temporary file
277	\rm /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME}
278
279	# ============ FRONTEND END ============ #
280
281	# ============ CESIUM START ============ #
282	# typeset NB_ESSAI DELAI status i
283	# if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
284	# #little hack so that rebuild submission is done on titane not an cesium
285	#
286	# libIGCM_POST_sed=$( echo $libIGCM_POST \| sed 's/\//\\\//g' )
287	# POST_DIR_sed=$( echo ${POST_DIR} \| sed 's/\//\\\//g' )
288	# sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
289	# sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
290	# sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
291	# sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
292	# \mv tmp.txt tmp_IGCM_sys_RshPost_$$
293	#
294	# echo cat tmp_IGCM_sys_RshPost_$$ AFTER
295	# cat tmp_IGCM_sys_RshPost_$$
296	#
297	# /bin/ksh <tmp_IGCM_sys_RshPost_$$
298	# if [ $? -gt 0 ] ; then
299	# echo "IGCM_sys_RshPost : erreur."
300	# IGCM_debug_Exit "IGCM_sys_RshPost"
301	# fi
302	# # delete temporary file
303	# \rm tmp_IGCM_sys_RshPost_$$
304	#
305	# else
306	# # number of tentative
307	# NB_ESSAI=10
308	# # time delay between tentative
309	# DELAI=10
310	# i=0
311	# while [ $i -ne $NB_ESSAI ] ; do
312	# ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
313	# status=$?
314	# if [ ${status} -ne 0 ];
315	# then
316	# sleep $DELAI
317	# else
318	# break
319	# fi
320	# let i=$i+1
321	# done
322	# # delete temporary file
323	# \rm tmp_IGCM_sys_RshPost_$$
324	#
325	# if [ ${status} -gt 0 ] ; then
326	# echo "IGCM_sys_RshPost : erreur."
327	# IGCM_debug_Exit "IGCM_sys_RshPost"
328	# fi
329	# fi
330
331	# ============ CESIUM END ============ #
332
333	IGCM_debug_PopStack "IGCM_sys_RshPost"
334	}
335
336	#D-#==================================================
337	#D-function IGCM_sys_SendMail
338	#D-* Purpose: Send mail when simulation is over
339	#D-* Examples:
340	#D-
341	function IGCM_sys_SendMail {
342	IGCM_debug_PushStack "IGCM_sys_SendMail" $@
343	if ( $DEBUG_sys ) ; then
344	echo "IGCM_sys_SendMail :" $@
345	fi
346
347	if ( ${ExitFlag} ) ; then
348	status=failed
349	else
350	status=completed
351	fi
352
353	cat << END_MAIL > job_end.mail
354	Dear ${LOGIN},
355
356	Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
357	Job started : ${DateBegin}
358	Job ended : ${DateEnd}
359	Output files are available in ${R_SAVE}
360	Files to be rebuild are temporarily available in ${REBUILD_DIR}
361	Pre-packed files are temporarily available in ${R_BUFR}
362	Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
363	END_MAIL
364
365	if [ ! -z ${config_UserChoices_MailName} ] ; then
366	mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
367	elif [ -f ~/.forward ] ; then
368	mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
369	fi
370
371	sleep 10
372	rm -f job_end.mail
373
374	if [ $? -gt 0 ] ; then
375	echo "IGCM_sys_SendMail : erreur."
376	IGCM_debug_Exit "IGCM_sys_SendMail"
377	fi
378	IGCM_debug_PopStack "IGCM_sys_SendMail"
379	}
380
381	#D-#==================================================
382	#D-function IGCM_sys_Mkdir
383	#D-* Purpose: Master locale mkdir command
384	#D-* Examples:
385	#D-
386	function IGCM_sys_Mkdir {
387	IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
388	if ( $DEBUG_sys ) ; then
389	echo "IGCM_sys_Mkdir :" $@
390	fi
391	if [ ! -d ${1} ]; then
392	\mkdir -p $1
393	if [ $? -gt 0 ] ; then
394	echo "IGCM_sys_Mkdir : erreur."
395	IGCM_debug_Exit "IGCM_sys_Mkdir"
396	fi
397	fi
398	# vérification :
399	if [ ! -d ${1} ] ; then
400	echo "IGCM_sys_Mkdir : erreur."
401	IGCM_debug_Exit "IGCM_sys_Mkdir"
402	fi
403	IGCM_debug_PopStack "IGCM_sys_Mkdir"
404	}
405
406	#D-#==================================================
407	#D-function IGCM_sys_MkdirArchive
408	#D-* Purpose: Mkdir on Archive
409	#D-* Examples:
410	#D-
411	function IGCM_sys_MkdirArchive {
412	IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
413	if ( $DEBUG_sys ) ; then
414	echo "IGCM_sys_MkdirArchive :" $@
415	fi
416	#- creation de repertoire sur le serveur fichier
417	if [ ! -d ${1} ]; then
418	\mkdir -p $1
419	status=$?
420
421	if [ ${status} -gt 0 ] ; then
422	IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}"
423	IGCM_debug_Exit "IGCM_sys_MkdirArchive"
424	fi
425	fi
426	IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
427	}
428
429	#D-#==================================================
430	#D-function IGCM_sys_MkdirWork
431	#D-* Purpose: Mkdir on Work
432	#D-* Examples:
433	#D-
434	function IGCM_sys_MkdirWork {
435	IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
436	if ( $DEBUG_sys ) ; then
437	echo "IGCM_sys_MkdirWork :" $@
438	fi
439	#- creation de repertoire sur le serveur fichier
440	if [ ! -d ${1} ]; then
441	\mkdir -p $1
442	if [ $? -gt 0 ] ; then
443	echo "IGCM_sys_MkdirWork : erreur."
444	IGCM_debug_Exit "IGCM_sys_MkdirWork"
445	fi
446	fi
447	IGCM_debug_PopStack "IGCM_sys_MkdirWork"
448	}
449
450	#D-#==================================================
451	#D-function IGCM_sys_Cd
452	#D-* Purpose: master cd command
453	#D-* Examples:
454	#D-
455	function IGCM_sys_Cd {
456	IGCM_debug_PushStack "IGCM_sys_Cd" $@
457	if ( $DEBUG_sys ) ; then
458	echo "IGCM_sys_Cd :" $@
459	fi
460	\cd $1
461	if [ $? -gt 0 ] ; then
462	echo "IGCM_sys_Cd : erreur."
463	IGCM_debug_Exit "IGCM_sys_Cd"
464	fi
465	IGCM_debug_PopStack "IGCM_sys_Cd"
466	}
467
468	#D-#==================================================
469	#D-function IGCM_sys_Chmod
470	#D-* Purpose: Chmod
471	#D-* Examples:
472	#D-
473	function IGCM_sys_Chmod {
474	IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
475	if ( $DEBUG_sys ) ; then
476	echo "IGCM_sys_Chmod :" $@
477	fi
478	\chmod $@
479	if [ $? -gt 0 ] ; then
480	echo "IGCM_sys_Chmod : erreur."
481	IGCM_debug_Exit "IGCM_sys_Chmod"
482	fi
483	IGCM_debug_PopStack "IGCM_sys_Chmod"
484	}
485
486	#D-#==================================================
487	#D-function IGCM_sys_FileSize
488	#D-* Purpose: Filesize
489	#D-* Examples:
490	#D-
491	function IGCM_sys_FileSize {
492	IGCM_debug_PushStack "IGCM_sys_FileSize" $@
493
494	typeset sizeF
495	set +A sizeF -- $( ls -la ${1} )
496	if [ $? -gt 0 ] ; then
497	IGCM_debug_Exit "IGCM_sys_FileSize"
498	fi
499	eval ${2}=${sizeF[4]}
500
501	IGCM_debug_PopStack "IGCM_sys_FileSize"
502	}
503
504	#D-#==================================================
505	#D-function IGCM_sys_TestDir
506	#D-* Purpose: Test Directory that must exists
507	#D-* Examples:
508	#D-
509	function IGCM_sys_TestDir {
510	IGCM_debug_PushStack "IGCM_sys_TestDir" $@
511	if ( $DEBUG_sys ) ; then
512	echo "IGCM_sys_TestDir :" $@
513	fi
514	typeset ExistFlag
515	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
516	IGCM_debug_PopStack "IGCM_sys_TestDir"
517
518	return ${ExistFlag}
519	}
520
521	#D-#==================================================
522	#D-function IGCM_sys_TestDirArchive
523	#D-* Purpose: Test Directory that must exists on Archive
524	#D-* Examples:
525	#D-
526	function IGCM_sys_TestDirArchive {
527	IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
528	if ( $DEBUG_sys ) ; then
529	echo "IGCM_sys_TestDirArchive :" $@
530	fi
531	typeset ExistFlag
532	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
533	IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
534	return ${ExistFlag}
535	}
536
537	#D-#==================================================
538	#D-function IGCM_sys_IsFileArchived
539	#D-* Purpose: Test file that must NOT EXISTS on Archive
540	#D-* Examples:
541	#D-
542	function IGCM_sys_IsFileArchived {
543	IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
544	if ( $DEBUG_sys ) ; then
545	echo "IGCM_sys_IsFileArchived :" $@
546	fi
547	typeset IsArchivedFlag
548	IsArchivedFlag=$( [ X$( echo $@ \| grep ^\/ccc\/store ) != X ] && echo 0 \|\| echo 1 )
549	IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
550
551	return ${IsArchivedFlag}
552	}
553
554	#D-#==================================================
555	#D-function IGCM_sys_TestFileArchive
556	#D-* Purpose: Test file that must NOT EXISTS on Archive
557	#D-* Examples:
558	#D-
559	function IGCM_sys_TestFileArchive {
560	IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
561	typeset ExistFlag
562	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
563	IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
564
565	return ${ExistFlag}
566	}
567
568	#D-#==================================================
569	#D-function IGCM_sys_TestFileBuffer
570	#D-* Purpose: Test file that must NOT EXISTS on Buffer
571	#D-* Examples:
572	#D-
573	function IGCM_sys_TestFileBuffer {
574	IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
575	typeset ExistFlag
576	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
577	IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
578
579	return ${ExistFlag}
580	}
581
582	#D-#==================================================
583	#D-function IGCM_sys_CountFileArchive
584	#D-* Purpose: Count files on Archive filesystem
585	#D-* Examples:
586	#D-
587	function IGCM_sys_CountFileArchive {
588	IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
589	ls ${@} 2>/dev/null \| wc -l
590	if [ $? -gt 0 ] ; then
591	echo "IGCM_sys_CountFileArchive : erreur."
592	fi
593	IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
594	}
595
596	#D-#==================================================
597	#D-function IGCM_sys_CountFileBuffer
598	#D-* Purpose: Count files on Scratch filesystem
599	#D-* Examples:
600	#D-
601	function IGCM_sys_CountFileBuffer {
602	IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
603	ls ${@} 2>/dev/null \| wc -l
604	if [ $? -gt 0 ] ; then
605	echo "IGCM_sys_CountFileBuffer : erreur."
606	fi
607	IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
608	}
609
610	#D-#==================================================
611	#D-function IGCM_sys_Tree
612	#D-* Purpose: Tree directories with files on ${ARCHIVE}
613	#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
614	#D-
615	function IGCM_sys_Tree {
616	IGCM_debug_PushStack "IGCM_sys_Tree" $@
617	if ( $DEBUG_sys ) ; then
618	echo "IGCM_sys_Tree :" $@
619	fi
620
621	\ls -lR ${@}
622
623	IGCM_debug_PopStack "IGCM_sys_Tree"
624	}
625
626	#D-#==================================================
627	#D-function IGCM_sys_Tar
628	#D-* Purpose: master tar command
629	#D-* Examples:
630	#D-
631	function IGCM_sys_Tar {
632	IGCM_debug_PushStack "IGCM_sys_Tar" $@
633	if ( $DEBUG_sys ) ; then
634	echo "IGCM_sys_Tar :" $@
635	fi
636	\tar cf $@
637	if [ $? -gt 0 ] ; then
638	echo "IGCM_sys_Tar : erreur."
639	IGCM_debug_Exit "IGCM_sys_Tar"
640	fi
641	IGCM_debug_PopStack "IGCM_sys_Tar"
642	}
643
644	#D-#==================================================
645	#D-function IGCM_sys_UnTar
646	#D-* Purpose: master un-tar command
647	#D-* Examples:
648	#D-
649	function IGCM_sys_UnTar {
650	IGCM_debug_PushStack "IGCM_sys_UnTar" $@
651	if ( $DEBUG_sys ) ; then
652	echo "IGCM_sys_UnTar :" $@
653	fi
654	\tar xvf $1
655	if [ $? -gt 0 ] ; then
656	echo "IGCM_sys_UnTar : erreur."
657	IGCM_debug_Exit "IGCM_sys_UnTar"
658	fi
659	IGCM_debug_PopStack "IGCM_sys_UnTar"
660	}
661
662	#D-#==================================================
663	#D-function IGCM_sys_Qsub
664	#D-* Purpose: Qsub new job
665	#D-* Examples:
666	#D-
667	function IGCM_sys_Qsub {
668	IGCM_debug_PushStack "IGCM_sys_Qsub" $@
669	if ( $DEBUG_sys ) ; then
670	echo "IGCM_sys_Qsub :" $@
671	fi
672	typeset options status
673	if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then
674	options=" -o ${Script_Output} -e ${Script_Output}"
675	else
676	options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}"
677	fi
678
679	/usr/bin/ccc_msub ${options} < $1
680	status=$?
681	if [ ${status} -gt 0 ] ; then
682	IGCM_debug_Print 2 "IGCM_sys_Qsub ${options} $1 : error code ${status}"
683	IGCM_debug_Exit "IGCM_sys_Qsub"
684	fi
685	IGCM_debug_PopStack "IGCM_sys_Qsub"
686	}
687
688	#D-#==================================================
689	#D-function IGCM_sys_QsubPost
690	#D-* Purpose: Qsub new job on scalaire
691	#D-* Examples:
692	#D-
693	function IGCM_sys_QsubPost {
694	IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
695	if ( $DEBUG_sys ) ; then
696	echo "IGCM_sys_QsubPost :" $@
697	fi
698	typeset status
699	MY_PROJECT=$(echo ${BRIDGE_MSUB_PROJECT} \| cut -d@ -f1 )
700	/usr/bin/ccc_msub -Q normal -A ${MY_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job
701	status=$?
702	if [ ${status} -gt 0 ] ; then
703	IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}"
704	IGCM_debug_Exit "IGCM_sys_QsubPost"
705	fi
706	IGCM_debug_PopStack "IGCM_sys_QsubPost"
707	}
708
709	#D-*************************
710	#D- File transfer functions
711	#D-*************************
712	#D-
713
714	#D-#==================================================
715	#D-function IGCM_sys_Rsync_out
716	#D-* Purpose: treat return val of rsync
717	#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
718	#D- Error values and explanations can depend on your system version.
719	function IGCM_sys_Rsync_out {
720	status=$1
721	if [ ! $status ] ; then
722	echo "rsync error !"
723	fi
724
725	if [ $MYLANG = "fr" ]; then
726	case $status in
727	0) return ;;
728	1) echo "Erreur de rsync ; RERR_SYNTAX : "
729	echo "Erreur de syntaxe ou d'utilisation."
730	return;;
731	2) echo "Erreur de rsync ; RERR_PROTOCOL : "
732	echo "Incompatibilité de protocole."
733	return;;
734	3) echo "Erreur de rsync ; RERR_FILESELECT 3"
735	echo "Erreurs lors de la sélection des fichiers d'entrée sortie et"
736	echo "répertoires"
737	return;;
738	4) echo "Erreur de rsync ; RERR_UNSUPPORTED"
739	echo "Action demandée non supportée : une tentative de manipulation de"
740	echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a"
741	echo "été faite ; ou une option qui est supportée par le client mais"
742	echo "pas par le serveur a été spécifiée."
743	return;;
744	10) echo "Erreur de rsync ; RERR_SOCKETIO"
745	echo "Erreur dans le socket d'entrée sortie"
746	return;;
747	11) echo "Erreur de rsync ; RERR_FILEIO"
748	echo "Erreur d'entrée sortie fichier"
749	return;;
750	12) echo "Erreur de rsync ; RERR_STREAMIO"
751	echo "Erreur dans flux de donnée du protocole rsync"
752	return;;
753	13) echo "Erreur de rsync ; RERR_MESSAGEIO"
754	echo "Erreur avec les diagnostics du programme"
755	return;;
756	14) echo "Erreur de rsync ; RERR_IPC"
757	echo "Erreur dans le code IPC"
758	return;;
759	20) echo "Erreur de rsync ; RERR_SIGNAL"
760	echo "SIGUSR1 ou SIGINT reçu"
761	return;;
762	21) echo "Erreur de rsync ; RERR_WAITCHILD"
763	echo "Une erreur retournée par waitpid()"
764	return;;
765	22) echo "Erreur de rsync ; RERR_MALLOC"
766	echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
767	return;;
768	23) echo ""
769	echo "Erreur fichier inexistant"
770	return;;
771	30) echo "Erreur de rsync ; RERR_TIMEOUT"
772	echo "Temps d'attente écoulé dans l'envoi/réception de données"
773	return;;
774	*) echo "Erreur de rsync : code de retour de rsync inconnu :" $status
775	return;;
776	esac
777	elif [ $MYLANG = "en" ] ; then
778	case $status in
779	0) return;;
780	1) echo "rsync error : Syntax or usage error "
781	return;;
782	2) echo "rsync error : Protocol incompatibility "
783	return;;
784	3) echo "rsync error : Errors selecting input/output files, dirs"
785	return;;
786	4) echo "rsync error : Requested action not supported: an attempt"
787	echo "was made to manipulate 64-bit files on a platform that cannot support"
788	echo "them; or an option was specified that is supported by the client and"
789	echo "not by the server."
790	return;;
791	5) echo "rsync error : Error starting client-server protocol"
792	return;;
793	10) echo "rsync error : Error in socket I/O "
794	return;;
795	11) echo "rsync error : Error in file I/O "
796	return;;
797	12) echo "rsync error : Error in rsync protocol data stream "
798	return;;
799	13) echo "rsync error : Errors with program diagnostics "
800	return;;
801	14) echo "rsync error : Error in IPC code "
802	return;;
803	20) echo "rsync error : Received SIGUSR1 or SIGINT "
804	return;;
805	21) echo "rsync error : Some error returned by waitpid() "
806	return;;
807	22) echo "rsync error : Error allocating core memory buffers "
808	return;;
809	23) echo "rsync error : Partial transfer due to error"
810	return;;
811	24) echo "rsync error : Partial transfer due to vanished source files"
812	return;;
813	30) echo "rsync error : Timeout in data send/receive "
814	return;;
815	*) echo "rsync error : return code of rsync unknown :" $status
816	return;;
817	esac
818	else
819	echo "unknown language $MYLANG."
820	return
821	fi
822	}
823
824	#D-#==================================================
825	#D-function IGCM_sys_Miror_libIGCM
826	#D-* Purpose: Mirror libIGCM PATH and lib to frontend
827	#D-* Examples:
828	#D-
829	function IGCM_sys_Mirror_libIGCM {
830	IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
831	if ( $DEBUG_sys ) ; then
832	echo "IGCM_sys_Mirror_libIGCM"
833	fi
834
835	typeset status
836
837	mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
838
839	echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
840	${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
841	status=$?
842
843	if [ ${status} -gt 0 ] ; then
844	echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend."
845	cat out_rsync
846	fi
847	IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
848	}
849
850	#D-#==================================================
851	#D-function IGCM_sys_Cp
852	#D-* Purpose: generic cp
853	#D-* Examples:
854	#D-
855	function IGCM_sys_Cp {
856	IGCM_debug_PushStack "IGCM_sys_Cp" $@
857	if ( $DEBUG_sys ) ; then
858	echo "IGCM_sys_Cp :" $@
859	fi
860
861	typeset status
862
863	echo cp $@ > out_rsync 2>&1
864	\cp $@ >> out_rsync 2>&1
865	status=$?
866
867	if [ ${status} -gt 0 ] ; then
868	echo "IGCM_sys_Cp : error code ${status}"
869	cat out_rsync
870	IGCM_debug_Exit "IGCM_sys_Cp"
871	else
872	\rm out_rsync
873	fi
874	IGCM_debug_PopStack "IGCM_sys_Cp"
875	}
876
877	#D-#==================================================
878	#D-function IGCM_sys_Rm
879	#D-* Purpose: generic rm
880	#D-* Examples:
881	#D-
882	function IGCM_sys_Rm {
883	IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
884	if ( $DEBUG_sys ) ; then
885	echo "IGCM_sys_Rm :" $@
886	fi
887
888	typeset status
889
890	echo rm $@ > out_rsync 2>&1
891	\rm $@ >> out_rsync 2>&1
892	status=$?
893
894	if [ ${status} -gt 0 ] ; then
895	echo "IGCM_sys_Rm : error code ${status}"
896	cat out_rsync
897	IGCM_debug_Exit "IGCM_sys_Rm"
898	else
899	\rm out_rsync
900	fi
901	IGCM_debug_PopStack "IGCM_sys_Rm"
902	}
903
904	#D-#==================================================
905	#D-function IGCM_sys_RmRunDir
906	#D-* Purpose: rm tmpdir (dummy function most of the time batch
907	#D- scheduler will do the job)
908	#D-* Examples:
909	#D-
910	function IGCM_sys_RmRunDir {
911	IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
912	if ( $DEBUG_sys ) ; then
913	echo "IGCM_sys_RmRunDir :" $@
914	fi
915
916	typeset status
917
918	echo rm $@ > out_rsync 2>&1
919	\rm $@ >> out_rsync 2>&1
920	status=$?
921
922	if [ ${status} -gt 0 ] ; then
923	echo "IGCM_sys_RmRunDir : rm error code is ${status}."
924	cat out_rsync
925	IGCM_debug_Exit "IGCM_sys_RmRunDir"
926	else
927	\rm out_rsync
928	fi
929	IGCM_debug_PopStack "IGCM_sys_RmRunDir"
930	}
931
932	#D-#==================================================
933	#D-function IGCM_sys_Mv
934	#D-* Purpose: generic move
935	#D-* Examples:
936	#D-
937	function IGCM_sys_Mv {
938	IGCM_debug_PushStack "IGCM_sys_Mv" $@
939	if ( $DEBUG_sys ) ; then
940	echo "IGCM_sys_Mv :" $@
941	fi
942
943	if [ $DRYRUN = 0 ]; then
944
945	typeset status
946
947	echo mv $@ > out_rsync 2>&1
948	\mv $@ >> out_rsync 2>&1
949	status=$?
950
951	if [ ${status} -gt 0 ] ; then
952	echo "IGCM_sys_Mv : error code ${status}"
953	cat out_rsync
954	IGCM_debug_Exit "IGCM_sys_Mv"
955	else
956	\rm out_rsync
957	fi
958	fi
959
960	IGCM_debug_PopStack "IGCM_sys_Mv"
961	}
962
963	#D-#==================================================
964	#D-function IGCM_sys_Put_Dir
965	#D-* Purpose: Copy a complete directory on $(ARCHIVE)
966	#D-* Examples:
967	#D-
968	function IGCM_sys_Put_Dir {
969	IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
970	if ( $DEBUG_sys ) ; then
971	echo "IGCM_sys_Put_Dir :" $@
972	fi
973	if [ $DRYRUN = 0 ]; then
974	if [ ! -d ${1} ] ; then
975	echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
976	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
977	return
978	fi
979
980	typeset status
981
982	# Only if we use rsync
983	#IGCM_sys_TestDirArchive $( dirname $2 )
984	#
985	#USUAL WAY
986	\cp -r $1 $2 > out_rsync 2>&1
987	status=$?
988
989	if [ ${status} -gt 0 ] ; then
990	IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}"
991	cat out_rsync
992	IGCM_debug_Exit "IGCM_sys_Put_Dir"
993	else
994	\rm out_rsync
995	fi
996	fi
997	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
998	}
999
1000	#D-#==================================================
1001	#D-function IGCM_sys_Get_Dir
1002	#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1003	#D-* Examples:
1004	#D-
1005	function IGCM_sys_Get_Dir {
1006	IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1007	if ( $DEBUG_sys ) ; then
1008	echo "IGCM_sys_Get_Dir :" $@
1009	fi
1010	if [ $DRYRUN = 0 ]; then
1011	# if [ ! -d ${1} ] ; then
1012	# echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1013	# IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1014	# return
1015	# fi
1016
1017	typeset NB_ESSAI DELAI status i
1018	# number of tentative
1019	NB_ESSAI=3
1020	# time delay between tentative
1021	DELAI=2
1022
1023	# Only if we use rsync
1024	#IGCM_sys_TestDirArchive $( dirname $2 )
1025	#
1026	# USUAL WAY
1027	# add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command :
1028	ccc_hsm get -r $1
1029
1030	i=0
1031	while [ $i -lt $NB_ESSAI ] ; do
1032	\cp -ur $1 $2 >> out_rsync 2>&1
1033	status=$?
1034	if [ ${status} -gt 0 ] ; then
1035	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}"
1036	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again."
1037	sleep $DELAI
1038	else
1039	break
1040	fi
1041	(( i = i + 1 ))
1042	done
1043
1044	if [ ${status} -gt 0 ] ; then
1045	echo "IGCM_sys_Get_Dir : error."
1046	cat out_rsync
1047	IGCM_debug_Exit "IGCM_sys_Get_Dir"
1048	else
1049	\rm out_rsync
1050	fi
1051	fi
1052	IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1053	}
1054
1055	#D-#==================================================
1056	#D-function IGCM_sys_Get_Master
1057	#D-* Purpose: Copy a complete directory from MASTER filesystem
1058	#D-* Examples:
1059	#D-
1060	function IGCM_sys_Get_Master {
1061	IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1062	if ( $DEBUG_sys ) ; then
1063	echo "IGCM_sys_Get_Master :" $@
1064	fi
1065	if [ $DRYRUN = 0 ]; then
1066	if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1067	echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1068	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1069	return
1070	fi
1071
1072	typeset NB_ESSAI DELAI status i
1073	# number of tentative
1074	NB_ESSAI=3
1075	# time delay between tentative
1076	DELAI=2
1077
1078	i=0
1079	while [ $i -lt $NB_ESSAI ] ; do
1080	\cp -urL $1 $2 > out_rsync 2>&1
1081	status=$?
1082	if [ ${status} -gt 0 ]; then
1083	IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
1084	IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
1085	sleep $DELAI
1086	else
1087	break
1088	fi
1089	(( i = i + 1 ))
1090	done
1091
1092	if [ ${status} -gt 0 ] ; then
1093	echo "IGCM_sys_Get_Master : error."
1094	cat out_rsync
1095	IGCM_debug_Exit "IGCM_sys_Get_Master"
1096	else
1097	\rm out_rsync
1098	fi
1099	fi
1100	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1101	}
1102
1103	#====================================================
1104	#- Call IGCM_sys_Mirror_libIGCM now !
1105	if ( $MirrorlibIGCM ) ; then
1106	IGCM_sys_Mirror_libIGCM
1107	fi
1108
1109	#D-#==================================================
1110	#D-function IGCM_sys_Put_Rest
1111	#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1112	#D- File and target directory must exist.
1113	#D-* Examples:
1114	#D-
1115	function IGCM_sys_Put_Rest {
1116	IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1117	if ( $DEBUG_sys ) ; then
1118	echo "IGCM_sys_Put_Rest :" $@
1119	fi
1120	if [ $DRYRUN = 0 ]; then
1121	if [ ! -f ${1} ] ; then
1122	echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1123	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1124	fi
1125
1126	typeset status
1127	#
1128	# USUAL WAY
1129	\cp $1 $2 > out_rsync 2>&1
1130	status=$?
1131
1132	# #RSYNC WITH NETWORK SSH CALL
1133	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1134	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1135
1136	# #RSYNC WITH NFS USE
1137	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1138	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1139
1140	# status=$?
1141	# IGCM_sys_Rsync_out $status
1142
1143	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1144	# (( status=status+$? ))
1145
1146	if [ ${status} -gt 0 ] ; then
1147	echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
1148	[ -f ${1} ] && ls -l ${1}
1149	[ -f ${2} ] && ls -l ${2}
1150	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1151	cat out_rsync
1152	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1153	else
1154
1155	if [ X${JobType} = XRUN ] ; then
1156	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1157	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1158	fi
1159
1160	\rm out_rsync
1161	fi
1162	fi
1163	IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1164	}
1165
1166	#D-#==================================================
1167	#D-function IGCM_sys_PutBuffer_Rest
1168	#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1169	#D- File and target directory must exist.
1170	#D-* Examples:
1171	#D-
1172	function IGCM_sys_PutBuffer_Rest {
1173	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1174	if ( $DEBUG_sys ) ; then
1175	echo "IGCM_sys_PutBuffer_Rest :" $@
1176	fi
1177	if [ $DRYRUN = 0 ]; then
1178	if [ ! -f ${1} ] ; then
1179	echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1180	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1181	fi
1182
1183	typeset status
1184	#
1185	# USUAL WAY
1186	\cp $1 $2 > out_rsync 2>&1
1187	status=$?
1188
1189	if [ ${status} -gt 0 ] ; then
1190	echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
1191	[ -f ${2} ] && ls -l ${2}
1192	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1193	cat out_rsync
1194	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1195	else
1196
1197	if [ X${JobType} = XRUN ] ; then
1198	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1199	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1200	fi
1201
1202	\rm out_rsync
1203	fi
1204	fi
1205	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1206	}
1207
1208	#D-#==================================================
1209	#D-function IGCM_sys_PrepareTaredRestart
1210	#D-* Purpose: Prepare tared restart to be access by computing job. Identity here.
1211	#D-* Examples:
1212	#D-
1213	function IGCM_sys_PrepareTaredRestart {
1214	IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@
1215	if [ $DRYRUN = 0 ]; then
1216	[ ! -f $( basename $1 ) ] && DEBUG_sys=false IGCM_sys_Get $1 .
1217	fi
1218	echo $( basename $1 )
1219	IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart"
1220	}
1221
1222	#D-#==================================================
1223	#D-function IGCM_sys_Put_Out
1224	#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1225	#D-* Examples:
1226	#D-
1227	function IGCM_sys_Put_Out {
1228	IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1229	if ( $DEBUG_sys ) ; then
1230	echo "IGCM_sys_Put_Out :" $@
1231	fi
1232
1233	typeset NB_ESSAI DELAI status i exist skip
1234
1235	# number of tentative
1236	NB_ESSAI=3
1237	# time delay between tentative
1238	DELAI=2
1239
1240	if [ $DRYRUN = 0 ]; then
1241	if [ ! -f ${1} ] ; then
1242	echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1243	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1244	return 1
1245	fi
1246	#
1247	IGCM_sys_MkdirArchive $( dirname $2 )
1248	#
1249
1250	#=====================================================
1251	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1252	#=====================================================
1253
1254	#echo ${2} \| grep "${R_OUT}" > /dev/null 2>&1
1255	#if [ $? -eq 0 ] ; then
1256	# typeset WORKPATH FILEPATH
1257	# WORKPATH=$( dirname $2 \| sed -e "s\|${R_OUT}\|${R_BUF}\|" )
1258	# IGCM_sys_MkdirWork ${WORKPATH}
1259	# FILEPATH=${WORKPATH}/$( basename $2 )
1260	# #
1261	# IGCM_sys_Cp ${1} ${FILEPATH}
1262	#fi
1263
1264	exist=false
1265	skip=false
1266	if [ -f $2 ] ; then
1267	IGCM_debug_Print 1 "$2 already exist"
1268	#dmget $2
1269	ccc_hsm get $2
1270	exist=true
1271	if [ "X$( diff $1 $2 )" = X ] ; then
1272	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1273	skip=true
1274	else
1275	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1276	skip=false
1277	fi
1278	fi
1279	#
1280	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1281	IGCM_sys_Chmod u+w $2
1282	fi
1283
1284	if [ X${skip} = Xfalse ] ; then
1285	i=0
1286	while [ $i -lt $NB_ESSAI ] ; do
1287	# USUAL WAY
1288	\cp $1 $2 > out_rsync 2>&1
1289	status=$?
1290	if [ ${status} -gt 0 ]; then
1291	IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1292	IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1293	[ -f ${1} ] && ls -l ${1}
1294	[ -f ${2} ] && ls -l ${2}
1295	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1296	sleep $DELAI
1297	else
1298	break
1299	fi
1300	(( i = i + 1 ))
1301	done
1302	fi
1303
1304	# #RSYNC WITH NETWORK SSH CALL
1305	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1306	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1307
1308	# #RSYNC WITH NFS USE
1309	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1310	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1311
1312	# status=$?
1313	# IGCM_sys_Rsync_out $status
1314
1315	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1316	# (( status=status+$? ))
1317
1318	if [ ${status} -gt 0 ] ; then
1319	echo "IGCM_sys_Put_Out : error."
1320	[ -f ${1} ] && ls -l ${1}
1321	[ -f ${2} ] && ls -l ${2}
1322	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1323	cat out_rsync
1324	IGCM_debug_Exit "IGCM_sys_Put_Out"
1325	else
1326
1327	if [ X${JobType} = XRUN ] ; then
1328	if [ X${3} = X ] ; then
1329	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1330	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1331	fi
1332	fi
1333
1334	\rm out_rsync
1335	fi
1336	fi
1337	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1338	return 0
1339	}
1340
1341	#D-#==================================================
1342	#D-function IGCM_sys_PutBuffer_Out
1343	#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1344	#D-* Examples:
1345	#D-
1346	function IGCM_sys_PutBuffer_Out {
1347	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1348	if ( $DEBUG_sys ) ; then
1349	echo "IGCM_sys_PutBuffer_Out :" $@
1350	fi
1351
1352	typeset NB_ESSAI DELAI status i exist skip
1353
1354	# number of tentative
1355	NB_ESSAI=3
1356	# time delay between tentative
1357	DELAI=2
1358
1359	if [ $DRYRUN = 0 ]; then
1360	if [ ! -f ${1} ] ; then
1361	echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1362	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1363	return 1
1364	fi
1365	#
1366	IGCM_sys_Mkdir $( dirname $2 )
1367	#
1368
1369	exist=false
1370	skip=false
1371	if [ -f $2 ] ; then
1372	IGCM_debug_Print 1 "$2 already exist"
1373	exist=true
1374	if [ "X$( diff $1 $2 )" = X ] ; then
1375	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1376	status=0
1377	skip=true
1378	else
1379	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1380	skip=false
1381	fi
1382	fi
1383	#
1384	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1385	IGCM_sys_Chmod u+w $2
1386	fi
1387
1388	if [ X${skip} = Xfalse ] ; then
1389	i=0
1390	while [ $i -lt $NB_ESSAI ] ; do
1391	# USUAL WAY
1392	\cp $1 $2 > out_rsync 2>&1
1393	status=$?
1394	if [ ${status} -gt 0 ]; then
1395	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1396	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
1397	[ -f ${2} ] && ls -l ${2}
1398	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1399	sleep $DELAI
1400	else
1401	break
1402	fi
1403	(( i = i + 1 ))
1404	done
1405	fi
1406
1407	if [ ${status} -gt 0 ] ; then
1408	echo "IGCM_sys_PutBuffer_Out : error."
1409	[ -f ${2} ] && ls -l ${2}
1410	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1411	cat out_rsync
1412	IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1413	else
1414
1415	if [ X${JobType} = XRUN ] ; then
1416	if [ X${3} = X ] ; then
1417	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1418	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1419	fi
1420	fi
1421
1422	\rm out_rsync
1423	fi
1424	fi
1425	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1426	return 0
1427	}
1428
1429	#D-#==================================================
1430	#D-function IGCM_sys_Get
1431	#D-* Purpose: Get a file from ${ARCHIVE}
1432	#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1433	#D- IGCM_sys_Get /l Array_contain_myfiles /destpath/
1434	function IGCM_sys_Get {
1435	IGCM_debug_PushStack "IGCM_sys_Get" $@
1436
1437	typeset DEST dm_liste target file_work
1438	typeset NB_ESSAI DELAI status i
1439
1440	if ( $DEBUG_sys ) ; then
1441	echo "IGCM_sys_Get :" $@
1442	fi
1443
1444	# number of tentative
1445	NB_ESSAI=3
1446	# time delay between tentative
1447	DELAI=2
1448
1449	if [ $DRYRUN -le 2 ]; then
1450	if [ X${1} = X'/l' ] ; then
1451	# test if the first file is present in the old computation :
1452	eval set +A dm_liste \${${2}}
1453	else
1454	eval set +A dm_liste ${1}
1455	fi
1456	eval DEST=\${${#}}
1457
1458	#=====================================================
1459	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1460	#=====================================================
1461
1462	# Is it an R_OUT file (not R_IN) ?
1463	#echo ${dm_liste[0]} \| grep "${R_OUT}" > /dev/null 2>&1
1464	#if [ $? -eq 0 ] ; then
1465	# # Yes ? then we try to get it in SCRATCHDIR
1466	# set +A file_work $( echo ${dm_liste[*]} \| sed -e "s\|${R_OUT}\|${R_BUF}\|g" )
1467	# if [ -f ${file_work[0]} ] ; then
1468	# IGCM_sys_Cp ${file_work[*]} ${DEST}
1469	# IGCM_debug_PopStack "IGCM_sys_Get"
1470	# return
1471	# fi
1472	#fi
1473
1474	ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1475	status=$?
1476	if [ ${status} -gt 0 ] ; then
1477	echo "WARNING IGCM_sys_Get : error code ${status}"
1478	cat out_rsync
1479	echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1480	fi
1481
1482	#if [ ${status} -gt 0 ] ; then
1483	# if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then
1484	# cat out_rsync
1485	# echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1486	# sleep 30
1487	# echo "We try another time"
1488	## dmget ${dm_liste[*]} > out_rsync 2>&1
1489	# ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1490	# status=$?
1491	# if [ ${status} -gt 0 ] ; then
1492	# echo "ERROR IGCM_sys_Get : again demigration error :"
1493	# cat out_rsync
1494	# IGCM_debug_Exit "IGCM_sys_Get"
1495	# fi
1496	# else
1497	# echo "ERROR IGCM_sys_Get : demigration error :"
1498	# cat out_rsync
1499	# IGCM_debug_Exit "IGCM_sys_Get"
1500	# fi
1501	#fi
1502
1503	# #RSYNC WITH NETWORK SSH CALL
1504	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1
1505	# ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1
1506
1507	# #RSYNC WITH NFS USE
1508	# echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1
1509	# ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1
1510
1511	# status=$?
1512	# IGCM_sys_Rsync_out $status
1513
1514	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1515	# (( status=status+$? ))
1516
1517	#USUAL WAY
1518	if [ X${1} = X'/l' ] ; then
1519	for target in ${dm_liste[*]} ; do
1520	local_file=$( basename ${target} )
1521	# test if the target file is present before the loop
1522	IGCM_sys_TestFileArchive ${target}
1523	status=$?
1524	if [ ${status} -gt 0 ] ; then
1525	echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1526	IGCM_debug_Exit "IGCM_sys_Get"
1527	else
1528	i=0
1529	while [ $i -lt $NB_ESSAI ] ; do
1530	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1531	status=$?
1532	if [ ${status} -gt 0 ]; then
1533	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1534	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1535	sleep $DELAI
1536	else
1537	break
1538	fi
1539	(( i = i + 1 ))
1540	done
1541	if [ ${status} -gt 0 ] ; then
1542	echo "IGCM_sys_Get : error"
1543	cat out_rsync
1544	\rm out_rsync
1545	IGCM_debug_Exit "IGCM_sys_Get"
1546	else
1547	\rm out_rsync
1548	fi
1549	fi
1550	done
1551	else
1552	i=0
1553	while [ $i -lt $NB_ESSAI ] ; do
1554	\cp ${dm_liste} ${DEST} >> out_rsync 2>&1
1555	status=$?
1556	if [ ${status} -gt 0 ]; then
1557	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1558	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1559	sleep $DELAI
1560	else
1561	break
1562	fi
1563	(( i = i + 1 ))
1564	done
1565	if [ ${status} -gt 0 ] ; then
1566	echo "IGCM_sys_Get : error"
1567	cat out_rsync
1568	\rm out_rsync
1569	IGCM_debug_Exit "IGCM_sys_Get"
1570	else
1571	\rm out_rsync
1572	fi
1573	fi
1574	fi
1575	IGCM_debug_PopStack "IGCM_sys_Get"
1576	}
1577
1578	#D-#==================================================
1579	#D-function IGCM_sys_GetBuffer
1580	#D-* Purpose: Get a file from ${SCRATCHDIR}
1581	#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1582	#D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1583	function IGCM_sys_GetBuffer {
1584	IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1585
1586	typeset DEST buf_liste target file_work
1587	typeset NB_ESSAI DELAI status i
1588
1589	if ( $DEBUG_sys ) ; then
1590	echo "IGCM_sys_GetBuffer :" $@
1591	fi
1592
1593	# number of tentative
1594	NB_ESSAI=3
1595	# time delay between tentative
1596	DELAI=2
1597
1598	if [ $DRYRUN -le 2 ]; then
1599	if [ X${1} = X'/l' ] ; then
1600	# test if the first file is present in the old computation :
1601	eval set +A buf_liste \${${2}}
1602	else
1603	eval set +A buf_liste ${1}
1604	fi
1605	eval DEST=\${${#}}
1606
1607	#USUAL WAY
1608	if [ X${1} = X'/l' ] ; then
1609	for target in ${buf_liste[*]} ; do
1610	local_file=$( basename ${target} )
1611	i=0
1612	while [ $i -lt $NB_ESSAI ] ; do
1613	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1614	status=$?
1615	if [ ${status} -gt 0 ]; then
1616	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1617	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1618	sleep $DELAI
1619	else
1620	break
1621	fi
1622	(( i = i + 1 ))
1623	done
1624	if [ ${status} -gt 0 ] ; then
1625	echo "IGCM_sys_Get : error"
1626	cat out_rsync
1627	\rm out_rsync
1628	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1629	else
1630	\rm out_rsync
1631	fi
1632	done
1633	else
1634	i=0
1635	while [ $i -lt $NB_ESSAI ] ; do
1636	\cp ${buf_liste} ${DEST} >> out_rsync 2>&1
1637	status=$?
1638	if [ ${status} -gt 0 ]; then
1639	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1640	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1641	sleep $DELAI
1642	else
1643	break
1644	fi
1645	(( i = i + 1 ))
1646	done
1647	if [ ${status} -gt 0 ] ; then
1648	echo "IGCM_sys_Get : error"
1649	cat out_rsync
1650	\rm out_rsync
1651	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1652	else
1653	\rm out_rsync
1654	fi
1655	fi
1656	fi
1657	IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1658	}
1659
1660	#D-#==================================================
1661	#D-function IGCM_sys_GetDate_FichWork
1662	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1663	#D-* Examples:
1664	#D-
1665	function IGCM_sys_GetDate_FichWork {
1666	IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1667	if ( $DEBUG_sys ) ; then
1668	echo "IGCM_sys_GetDate_FichWork :" $@
1669	fi
1670	typeset dateF
1671	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1672	eval ${2}=${dateF[5]}
1673
1674	# donne la date filesys d'un fichier sur la machine work
1675	IGCM_debug_PopStack "IGCM_sys_FichWork"
1676	}
1677
1678	#D-#==================================================
1679	#D-function IGCM_sys_GetDate_FichArchive
1680	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1681	#D-* Examples:
1682	#D-
1683	function IGCM_sys_GetDate_FichArchive {
1684	IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1685	if ( $DEBUG_sys ) ; then
1686	echo "IGCM_sys_GetDate_FichArchive :" $@
1687	fi
1688	typeset dateF
1689	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1690	eval ${2}=${dateF[5]}
1691
1692	IGCM_debug_PopStack "IGCM_sys_FichArchive"
1693	}
1694
1695	#D-#==================================================
1696	#D-function IGCM_sys_Dods_Rm
1697	#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1698	#D-* Examples:
1699	#D-
1700	function IGCM_sys_Dods_Rm {
1701	if ( $DEBUG_sys ) ; then
1702	echo "IGCM_sys_Dods_Rm :" $@
1703	fi
1704	typeset status
1705	if [ $DRYRUN = 0 ]; then
1706
1707	# if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1708	# echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1709	# echo "Nothing has been done."
1710	# return
1711	# fi
1712
1713	/ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1714	status=$?
1715
1716	# if [ ${status} -gt 0 ] ; then
1717	# echo "IGCM_sys_Dods_Rm : error."
1718	# cat out_dods_rm
1719	# IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1720	# else
1721	# rm out_dods_rm
1722	# fi
1723
1724	fi
1725	return $status
1726	}
1727
1728	#D-#==================================================
1729	#D-function IGCM_sys_Dods_Cp
1730	#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1731	#D-* Examples:
1732	#D-
1733	function IGCM_sys_Dods_Cp {
1734	if ( $DEBUG_sys ) ; then
1735	echo "IGCM_sys_Dods_Cp :" $@
1736	fi
1737	typeset status
1738	if [ $DRYRUN = 0 ]; then
1739
1740	# if [ ! -d ${R_SAVE}/${1} ] ; then
1741	# echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1742	# echo "Nothing has been done."
1743	# return
1744	# fi
1745
1746	/ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1747	status=$?
1748
1749	# if [ ${status} -gt 0 ] ; then
1750	# echo "IGCM_sys_Dods_Cp : error."
1751	# cat out_dods_cp
1752	# IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1753	# else
1754	# rm out_dods_cp
1755	# fi
1756
1757	fi
1758	return $status
1759	}
1760
1761	#D-#==================================================
1762	#D-function IGCM_sys_Put_Dods
1763	#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1764	#D-* Examples:
1765	#D-
1766	function IGCM_sys_Put_Dods {
1767	IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1768	if ( $DEBUG_sys ) ; then
1769	echo "IGCM_sys_Put_Dods :" $@
1770	fi
1771	#set -vx
1772	typeset status
1773	if [ $DRYRUN = 0 ]; then
1774	if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1775	echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1776	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1777	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1778	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1779	return
1780	fi
1781
1782	if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1783	echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1784	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1785	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1786	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1787	return
1788	fi
1789	#
1790	if [ -d ${R_SAVE}/${1} ] ; then
1791	cd ${R_SAVE}
1792	elif [ -d ${R_FIGR}/${1} ] ; then
1793	cd ${R_FIGR}
1794	fi
1795
1796	IGCM_sys_Dods_Rm ${1}
1797	IGCM_sys_Dods_Cp ${1}
1798	status=0
1799
1800	if [ ${status} -gt 0 ] ; then
1801	echo "IGCM_sys_Put_Dods : error."
1802	IGCM_debug_Exit "IGCM_sys_Put_Dods"
1803	fi
1804	fi
1805	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1806	}
1807
1808	##############################################################
1809	# REBUILD OPERATOR
1810
1811	#D-#==================================================
1812	#D-function IGCM_sys_rebuild
1813	#D-* Purpose: rebuild parallel files
1814	#D-* Examples:
1815	#D-
1816	function IGCM_sys_rebuild {
1817	IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1818	if ( $DEBUG_sys ) ; then
1819	echo "IGCM_sys_rebuild :" $@
1820	fi
1821
1822	typeset NB_ESSAI DELAI status i firstArg
1823	# number of tentative
1824	NB_ESSAI=3
1825	# time delay between tentative
1826	DELAI=2
1827
1828	i=0
1829	while [ $i -lt $NB_ESSAI ] ; do
1830	~p86ipsl/CESIUM/bin/rebuild -f -o $@ > out_rsync 2>&1
1831	status=$?
1832	if [ ${status} -gt 0 ] ; then
1833	IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
1834	cat out_rsync
1835	\rm out_rsync
1836	IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
1837	firstArg=${1}
1838	\rm ${firstArg}
1839	sleep $DELAI
1840	else
1841	\rm out_rsync
1842	break
1843	fi
1844	(( i = i + 1 ))
1845	done
1846
1847	if [ ${status} -gt 0 ] ; then
1848	echo "IGCM_sys_rebuild : rebuild error code is ${status}"
1849	IGCM_debug_Exit "rebuild"
1850	fi
1851
1852	IGCM_debug_PopStack "IGCM_sys_rebuild"
1853	}
1854
1855	#D-#==================================================
1856	#D-function IGCM_sys_rebuild_station
1857	#D-* Purpose: rebuild parallel files describing station
1858	#D-* Examples:
1859	#D-
1860	function IGCM_sys_rebuild_station {
1861	IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1862	typeset i list_opt file_in file_out prefix_invert list_invert
1863	if ( $DEBUG_sys ) ; then
1864	echo "IGCM_sys_rebuild_station :" $@
1865	fi
1866	list_opt=$@
1867
1868	# Invert Axis : t,x -> x,t
1869	# t,pres,x -> x,t,pres
1870	# So that we can concatenate along x
1871	i=0
1872	for file_in in ${list_opt} ; do
1873	(( i = i + 1))
1874	[ ${i} = 1 ] && file_out=${file_in} && continue
1875	prefix_invert=$( basename ${file_in} .nc )
1876	IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1877	list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1878	done
1879
1880	# Concatenate
1881	IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1882
1883	# Re-ivert file
1884	IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1885
1886	# Station re-ordering is too expansive to be run within libICGM
1887	# This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1888	# This re-ordering must be done "in memory" by the cmorization process
1889	# Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1890	# BEGIN reordering
1891
1892	# Only LMDZ text output contains the exact ordering of the station.
1893	# We isolate this in the code below:
1894	# 0 38 -157.5000000000000 70.98591549295774
1895	# 0 54 27.49999999999999 67.18309859154928
1896	# 0 56 -62.50000000000001 82.39436619718309
1897	# 0 79 12.49999999999999 78.59154929577466
1898	# 0 116 -165.0000000000000 76.05633802816901
1899	# 0 117 130.0000000000000 70.98591549295774
1900	# 0 118 110.0000000000000 87.46478873239437
1901	# 1 40 4.999999999999995 51.97183098591550
1902	# typeset iStation iProc list_opt file_in file_out prefix_invert
1903	# typeset -Z4 j4
1904	# typeset -Z3 j3
1905
1906	# unset list_opt
1907	# set +A list_opt $@
1908
1909	# Filename after rebuild
1910	# file_out=${list_opt[0]}
1911	# Prefix of output files
1912	# prefix_invert=$( basename ${file_out} .nc )
1913	# Number of procs
1914	# num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} \| wc -l )
1915
1916	# iProc=0
1917	# while [ ${iProc} -lt ${num_proc} ] ; do
1918	# Array containing Station as a number
1919	# unset proc_stn
1920	# set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} \| sed -e "s/iophy_mpi rank ip lon lat //g" \| awk ' {print $2}' )
1921	# Number of stations produced by processor proc
1922	# stationLast=${#proc_stn[*]}
1923	# Proc number on 4 digits
1924	# j4=${iProc}
1925	# Init
1926	# iStation=0
1927	# while [ ${iStation} -lt ${stationLast} ] ; do
1928	# Station number on 3 digits
1929	# j3=${proc_stn[${iStation}]}
1930	# Extract station
1931	# Invert Axis : t,x -> x,t
1932	# t,pres,x -> x,t,pres
1933	# So that we can concatenate along x
1934	# IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1935	# (( iStation = iStation + 1 ))
1936	# done
1937	# (( iProc = iProc + 1 ))
1938	# done
1939
1940	# Concatenate all station along x
1941	# IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1942
1943	# Re-invert file
1944	# IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1945
1946	# END reordering
1947
1948	IGCM_debug_PopStack "IGCM_sys_rebuild_station"
1949	}
1950
1951	############################################################
1952	# Activate Running Environnment Variables
1953
1954	#D-#==================================================
1955	#D-function IGCM_sys_desactiv_variables
1956	#D-* Purpose: set environement variables prior to execution
1957	#D-* Examples:
1958	#D-
1959	function IGCM_sys_activ_variables {
1960	IGCM_debug_PushStack "IGCM_sys_activ_variables"
1961	if ( $DEBUG_sys ) ; then
1962	echo "IGCM_sys_activ_variables"
1963	fi
1964
1965	# --------------------------------------------------------------------
1966	#D- MPI specifications
1967	# --------------------------------------------------------------------
1968
1969	# --------------------------------------------------------------------
1970	#D- Other specifications
1971	# --------------------------------------------------------------------
1972
1973	ulimit -s unlimited
1974
1975	IGCM_debug_PopStack "IGCM_sys_activ_variables"
1976	}
1977
1978	############################################################
1979	# Desactivate Running Environnment Variables
1980
1981	#D-#==================================================
1982	#D-function IGCM_sys_desactiv_variables
1983	#D-* Purpose: unset environement variables after execution
1984	#D-* Examples:
1985	#D-
1986	function IGCM_sys_desactiv_variables {
1987	IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
1988	if ( $DEBUG_sys ) ; then
1989	echo "IGCM_sys_desactiv_variables"
1990	fi
1991	# --------------------------------------------------------------------
1992	#D- MPI specifications
1993	# --------------------------------------------------------------------
1994
1995	# --------------------------------------------------------------------
1996	#D- Other specifications
1997	# --------------------------------------------------------------------
1998
1999	IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
2000	}
2001
2002	############################################################
2003	# Build MPI/OMP scripts run file (dummy function)
2004
2005	#D-#==================================================
2006	#D-function IGCM_sys_build_run_file
2007	#D-* Purpose: build run file (deprecated)
2008	#D-* Examples:
2009	#D-
2010	function IGCM_sys_build_run_file {
2011
2012	IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
2013
2014	}
2015
2016	############################################################
2017	# Build MPI/OMP scripts
2018
2019	#D-#==================================================
2020	#D-function IGCM_sys_build_execution_scripts
2021	#D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND}
2022	#D-* Examples:
2023	#D-
2024	function IGCM_sys_build_execution_scripts
2025	{
2026	IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
2027	if ( $DEBUG_sys ) ; then
2028	echo "IGCM_sys_build_execution_scripts " $@
2029	fi
2030
2031	EXECUTION=${HOST_MPIRUN_COMMAND}
2032
2033	if ( ${OK_PARA_MPMD} ) ; then
2034
2035	if [ -f run_file ] ; then
2036	IGCM_sys_Rm -f run_file
2037	fi
2038	touch run_file
2039
2040	# run_file construction
2041
2042	# Then first loop on the components for the coupler ie oasis
2043
2044	## the coupler ie oasis must be the first one
2045	for comp in ${config_ListOfComponents[*]} ; do
2046
2047	eval ExeNameIn=\${config_Executable_${comp}[0]}
2048	eval ExeNameOut=\${config_Executable_${comp}[1]}
2049
2050	# for CPL component only
2051	if [ "X${comp}" = "XCPL" ] ; then
2052
2053	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2054	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2055	echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2056	fi
2057	done
2058
2059	# Then second loop on the components
2060
2061	for comp in ${config_ListOfComponents[*]} ; do
2062
2063	eval ExeNameIn=\${config_Executable_${comp}[0]}
2064	eval ExeNameOut=\${config_Executable_${comp}[1]}
2065
2066	# Only if we really have an executable for the component and not the coupler ie oasis:
2067	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2068
2069	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2070	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2071	echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2072	fi
2073	done
2074
2075	EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file"
2076
2077	IGCM_sys_Chmod u+x run_file
2078	if ( $DEBUG_sys ) ; then
2079	echo "run_file contains : "
2080	cat run_file
2081	fi
2082
2083	else # Only one executable. launch it.
2084
2085	for comp in ${config_ListOfComponents[*]} ; do
2086
2087	# Only if we really have an executable for the component :
2088	eval ExeNameOut=\${config_Executable_${comp}[1]}
2089	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2090
2091	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2092	echo "" >> script_${ExeNameOut}.ksh
2093	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2094
2095	if ( ${OK_PARA_OMP} ) ; then
2096	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2097	echo "" >> script_${ExeNameOut}.ksh
2098	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
2099	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
2100	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
2101	echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2102	fi
2103
2104	if ( ${OK_PARA_MPI} ) ; then
2105	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2106	# Default : ccc_mprun used if nb_proc gt 1
2107	# to have out/err per process on different files
2108	# echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}" >> script_${ExeNameOut}.ksh
2109	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2110	EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh"
2111	else
2112	# Default : ccc_mprun is NOT used if nb_proc eq 1
2113	# to have out/err per process on different files
2114	# echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2115	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2116	EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh"
2117	fi
2118
2119	IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains"
2120	cat script_${ExeNameOut}.ksh
2121
2122	fi
2123
2124	done
2125
2126	fi
2127
2128	IGCM_debug_Print 1 "sys Curie : execution command is "
2129	IGCM_debug_Print 1 "$EXECUTION"
2130
2131	IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2132	}
2133
2134	############################################################
2135	# Check of space available on temporary filesytems.
2136
2137	#D-#==================================================
2138	#D-function IGCM_sys_check_quota
2139	#D-* Purpose: check user quota. Stop the simulation if quota above 90%
2140	#D-* Examples:
2141	#D-
2142	function IGCM_sys_check_quota {
2143	IGCM_debug_PushStack "IGCM_sys_check_quota"
2144	if ( $DEBUG_sys ) ; then
2145	echo "IGCM_sys_check_quota"
2146	fi
2147	# Limit of quota (in %)
2148	limit_quota=90
2149
2150	# Check of the volume
2151	volume_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $2}')
2152	volume_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $3}')
2153
2154	if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then
2155
2156	unit_avail=${volume_avail: -1}
2157	unit_quota=${volume_quota: -1}
2158
2159	if [ "${unit_quota}" = "*" ] ; then
2160	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2161	IGCM_debug_Print 1 "More than 100% of your quota is used"
2162	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2163	IGCM_debug_Print 1 "You must have more than 10% available to run"
2164	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2165	IGCM_debug_Verif_Exit
2166	fi
2167
2168	temp_avail=${volume_avail%%${volume_avail: -1}*}
2169	temp_quota=${volume_quota%%${volume_quota: -1}*}
2170
2171	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2172
2173	# Convertion
2174	if [ ${volume_avail: -1} = "T" ] ; then
2175	(( temp_avail = temp_avail * 1000000000000 ))
2176	elif [ ${volume_avail: -1} = "G" ] ; then
2177	(( temp_avail = temp_avail * 1000000000 ))
2178	elif [ ${volume_avail: -1} = "M" ] ; then
2179	(( temp_avail = temp_avail * 1000000 ))
2180	elif [ ${volume_avail: -1} = "k" ] ; then
2181	(( temp_avail = temp_avail * 1000 ))
2182	else
2183	(( temp_avail = volume_avail ))
2184	fi
2185	if [ ${volume_quota: -1} = "T" ] ; then
2186	(( temp_quota = temp_quota * 1000000000000 ))
2187	elif [ ${volume_quota: -1} = "G" ] ; then
2188	(( temp_quota = temp_quota * 1000000000 ))
2189	elif [ ${volume_quota: -1} = "M" ] ; then
2190	(( temp_quota = temp_quota * 1000000 ))
2191	elif [ ${volume_quota: -1} = "k" ] ; then
2192	(( temp_quota = temp_quota * 1000 ))
2193	else
2194	(( temp_quota = volume_quota ))
2195	fi
2196	fi
2197
2198	quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2199	# echo "volume ratio is " $quota_volume
2200
2201	if [ ${quota_volume} -ge ${limit_quota} ] ; then
2202	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2203	IGCM_debug_Print 1 "${quota_volume}% of your quota is used"
2204	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2205	IGCM_debug_Print 1 "You must have more than 10% available to run"
2206	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2207	IGCM_debug_Verif_Exit
2208	fi
2209
2210	fi
2211
2212	# Check of the number of inodes
2213
2214	inode_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $6}')
2215	inode_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $7}')
2216
2217	if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then
2218
2219	unit_avail=${inode_avail: -1}
2220	unit_quota=${inode_quota: -1}
2221
2222	if [ "${unit_quota}" = "*" ] ; then
2223	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2224	IGCM_debug_Print 1 "More than 100% of your quota is used"
2225	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2226	IGCM_debug_Print 1 "You must have more than 10% available to run"
2227	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2228	IGCM_debug_Verif_Exit
2229	fi
2230
2231	temp_avail=${inode_avail%%${inode_avail: -1}*}
2232	temp_quota=${inode_quota%%${inode_quota: -1}*}
2233
2234	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2235
2236	# Convertion
2237	if [ ${inode_avail: -1} = "T" ] ; then
2238	(( temp_avail = temp_avail * 1000000000000 ))
2239	elif [ ${inode_avail: -1} = "G" ] ; then
2240	(( temp_avail = temp_avail * 1000000000 ))
2241	elif [ ${inode_avail: -1} = "M" ] ; then
2242	(( temp_avail = temp_avail * 1000000 ))
2243	elif [ ${inode_avail: -1} = "k" ] ; then
2244	(( temp_avail = temp_avail * 1000 ))
2245	else
2246	(( temp_avail = inode_avail ))
2247	fi
2248
2249	if [ ${inode_quota: -1} = "T" ] ; then
2250	(( temp_quota = temp_quota * 1000000000000 ))
2251	elif [ ${inode_quota: -1} = "G" ] ; then
2252	(( temp_quota = temp_quota * 1000000000 ))
2253	elif [ ${inode_quota: -1} = "M" ] ; then
2254	(( temp_quota = temp_quota * 1000000 ))
2255	elif [ ${inode_quota: -1} = "k" ] ; then
2256	(( temp_quota = temp_quota * 1000 ))
2257	else
2258	(( temp_quota = inode_quota ))
2259	fi
2260	fi
2261	quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2262	# echo "inode ratio is " $quota_inode
2263
2264	if [ ${quota_inode} -ge ${limit_quota} ] ; then
2265	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2266	IGCM_debug_Print 1 "${quota_inode}% of your quota is used"
2267	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2268	IGCM_debug_Print 1 "You must have more than 10% available to run"
2269	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2270	IGCM_debug_Verif_Exit
2271	fi
2272	fi
2273	IGCM_debug_PopStack "IGCM_sys_check_quota"
2274	}
2275
2276	#D-#==================================================
2277	#D-function IGCM_sys_CountJobInQueue
2278	#D-* Purpose: Check if job_name is currently
2279	#D- running or in queue
2280	#D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun
2281	#D-
2282	function IGCM_sys_CountJobInQueue {
2283	IGCM_debug_PushStack "IGCM_sys_CountJobInQueue"
2284	if ( $DEBUG_sys ) ; then
2285	echo "IGCM_sys_CountJobInQueue"
2286	fi
2287
2288	#NbRun=$( ccc_mstat -f \| grep -c ${JobName} )
2289
2290	# With -f option, the full job name is given in the last column
2291	NbRun=$( ccc_mstat -f \| gawk -v JobName=$1 'BEGIN { x=0 } ($NF~String) { x=x+1 } END { print x }' )
2292
2293	eval ${2}=${NbRun}
2294
2295	IGCM_debug_PopStack "IGCM_sys_CountJobInQueue"
2296	}
2297
2298	##############################################################
2299	# NCO OPERATOR
2300
2301	#D-#==================================================
2302	#D-function IGCM_sys_ncap2
2303	#D-* Purpose: encapsulate ncap2 call so as to manage error code and retry
2304	#D-* Examples:
2305	#D-
2306	function IGCM_sys_ncap2 {
2307	IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2308	if ( $DEBUG_sys ) ; then
2309	echo "IGCM_sys_ncap2 :" $@
2310	fi
2311
2312	typeset NB_ESSAI DELAI status i
2313	# number of tentative
2314	NB_ESSAI=3
2315	# time delay between tentative
2316	DELAI=2
2317
2318	i=0
2319	while [ $i -lt $NB_ESSAI ] ; do
2320	ncap2 "$@" > out_rsync 2>&1
2321	status=$?
2322	if [ ${status} -gt 0 ] ; then
2323	IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2324	cat out_rsync
2325	\rm out_rsync
2326	IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2327	sleep $DELAI
2328	else
2329	\rm out_rsync
2330	break
2331	fi
2332	(( i = i + 1 ))
2333	done
2334
2335	if [ ${status} -gt 0 ] ; then
2336	echo "IGCM_sys_ncap2 : ncap2 error"
2337	IGCM_debug_Exit "ncap2"
2338	fi
2339
2340	IGCM_debug_PopStack "IGCM_sys_ncap2"
2341	}
2342
2343	#D-#==================================================
2344	#D-function IGCM_sys_ncatted
2345	#D-* Purpose: encapsulate ncatted call so as to manage error code and retry
2346	#D-* Examples:
2347	#D-
2348	function IGCM_sys_ncatted {
2349	IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2350	if ( $DEBUG_sys ) ; then
2351	echo "IGCM_sys_ncatted :" $@
2352	fi
2353
2354	typeset NB_ESSAI DELAI status i
2355	# number of tentative
2356	NB_ESSAI=3
2357	# time delay between tentative
2358	DELAI=2
2359
2360	i=0
2361	while [ $i -lt $NB_ESSAI ] ; do
2362	ncatted "$@" > out_rsync 2>&1
2363	status=$?
2364	if [ ${status} -gt 0 ] ; then
2365	IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2366	cat out_rsync
2367	\rm out_rsync
2368	IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2369	sleep $DELAI
2370	else
2371	\rm out_rsync
2372	break
2373	fi
2374	(( i = i + 1 ))
2375	done
2376
2377	if [ ${status} -gt 0 ] ; then
2378	echo "IGCM_sys_ncatted : ncatted error"
2379	IGCM_debug_Exit "ncatted"
2380	fi
2381
2382	IGCM_debug_PopStack "IGCM_sys_ncatted"
2383	}
2384
2385	#D-#==================================================
2386	#D-function IGCM_sys_ncbo
2387	#D-* Purpose: encapsulate ncbo call so as to manage error code and retry
2388	#D-* Examples:
2389	#D-
2390	function IGCM_sys_ncbo {
2391	IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2392	if ( $DEBUG_sys ) ; then
2393	echo "IGCM_sys_ncbo :" $@
2394	fi
2395
2396	typeset NB_ESSAI DELAI status i
2397	# number of tentative
2398	NB_ESSAI=3
2399	# time delay between tentative
2400	DELAI=2
2401
2402	i=0
2403	while [ $i -lt $NB_ESSAI ] ; do
2404	ncbo $@ > out_rsync 2>&1
2405	status=$?
2406	if [ ${status} -gt 0 ] ; then
2407	IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2408	cat out_rsync
2409	\rm out_rsync
2410	IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2411	sleep $DELAI
2412	else
2413	\rm out_rsync
2414	break
2415	fi
2416	(( i = i + 1 ))
2417	done
2418
2419	if [ ${status} -gt 0 ] ; then
2420	echo "IGCM_sys_ncbo : ncbo error"
2421	IGCM_debug_Exit "ncbo"
2422	fi
2423
2424	IGCM_debug_PopStack "IGCM_sys_ncbo"
2425	}
2426
2427	#D-#==================================================
2428	#D-function IGCM_sys_ncdif
2429	#D-* Purpose: encapsulate ncdiff call so as to manage error code and retry
2430	#D-* Examples:
2431	#D-
2432	function IGCM_sys_ncdiff {
2433	IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2434	if ( $DEBUG_sys ) ; then
2435	echo "IGCM_sys_ncdiff :" $@
2436	fi
2437
2438	typeset NB_ESSAI DELAI status i
2439	# number of tentative
2440	NB_ESSAI=3
2441	# time delay between tentative
2442	DELAI=2
2443
2444	i=0
2445	while [ $i -lt $NB_ESSAI ] ; do
2446	ncdiff $@ > out_rsync 2>&1
2447	status=$?
2448	if [ ${status} -gt 0 ] ; then
2449	IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2450	cat out_rsync
2451	\rm out_rsync
2452	IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2453	sleep $DELAI
2454	else
2455	\rm out_rsync
2456	break
2457	fi
2458	(( i = i + 1 ))
2459	done
2460
2461	if [ ${status} -gt 0 ] ; then
2462	echo "IGCM_sys_ncdiff : ncdiff error"
2463	IGCM_debug_Exit "ncdiff"
2464	fi
2465
2466	IGCM_debug_PopStack "IGCM_sys_ncdiff"
2467	}
2468
2469	#D-#==================================================
2470	#D-function IGCM_sys_ncea
2471	#D-* Purpose: encapsulate ncea call so as to manage error code and retry
2472	#D-* Examples:
2473	#D-
2474	function IGCM_sys_ncea {
2475	IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2476	if ( $DEBUG_sys ) ; then
2477	echo "IGCM_sys_ncea :" $@
2478	fi
2479
2480	typeset NB_ESSAI DELAI status i
2481	# number of tentative
2482	NB_ESSAI=3
2483	# time delay between tentative
2484	DELAI=2
2485
2486	i=0
2487	while [ $i -lt $NB_ESSAI ] ; do
2488	ncea $@ > out_rsync 2>&1
2489	status=$?
2490	if [ ${status} -gt 0 ] ; then
2491	IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2492	cat out_rsync
2493	\rm out_rsync
2494	IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2495	sleep $DELAI
2496	else
2497	\rm out_rsync
2498	break
2499	fi
2500	(( i = i + 1 ))
2501	done
2502
2503	if [ ${status} -gt 0 ] ; then
2504	echo "IGCM_sys_ncea : ncea error"
2505	IGCM_debug_Exit "ncea"
2506	fi
2507
2508	IGCM_debug_PopStack "IGCM_sys_ncea"
2509	}
2510
2511	#D-#==================================================
2512	#D-function IGCM_sys_ncecat
2513	#D-* Purpose: encapsulate ncecat call so as to manage error code and retry
2514	#D-* Examples:
2515	#D-
2516	function IGCM_sys_ncecat {
2517	IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2518	if ( $DEBUG_sys ) ; then
2519	echo "IGCM_sys_ncecat :" $@
2520	fi
2521
2522	typeset NB_ESSAI DELAI status i
2523	# number of tentative
2524	NB_ESSAI=3
2525	# time delay between tentative
2526	DELAI=2
2527
2528	i=0
2529	while [ $i -lt $NB_ESSAI ] ; do
2530	ncecat $@ > out_rsync 2>&1
2531	status=$?
2532	if [ ${status} -gt 0 ] ; then
2533	IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2534	cat out_rsync
2535	\rm out_rsync
2536	IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2537	sleep $DELAI
2538	else
2539	\rm out_rsync
2540	break
2541	fi
2542	(( i = i + 1 ))
2543	done
2544
2545	if [ ${status} -gt 0 ] ; then
2546	echo "IGCM_sys_ncecat : ncecat error"
2547	IGCM_debug_Exit "ncecat"
2548	fi
2549
2550	IGCM_debug_PopStack "IGCM_sys_ncecat"
2551	}
2552
2553	#D-#==================================================
2554	#D-function IGCM_sys_ncflint
2555	#D-* Purpose: encapsulate ncflint call so as to manage error code and retry
2556	#D-* Examples:
2557	#D-
2558	function IGCM_sys_ncflint {
2559	IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2560	if ( $DEBUG_sys ) ; then
2561	echo "IGCM_sys_ncflint :" $@
2562	fi
2563
2564	typeset NB_ESSAI DELAI status i
2565	# number of tentative
2566	NB_ESSAI=3
2567	# time delay between tentative
2568	DELAI=2
2569
2570	i=0
2571	while [ $i -lt $NB_ESSAI ] ; do
2572	ncflint $@ > out_rsync 2>&1
2573	status=$?
2574	if [ ${status} -gt 0 ] ; then
2575	IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2576	cat out_rsync
2577	\rm out_rsync
2578	IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2579	sleep $DELAI
2580	else
2581	\rm out_rsync
2582	break
2583	fi
2584	(( i = i + 1 ))
2585	done
2586
2587	if [ ${status} -gt 0 ] ; then
2588	echo "IGCM_sys_ncflint : ncflint error"
2589	IGCM_debug_Exit "ncflint"
2590	fi
2591
2592	IGCM_debug_PopStack "IGCM_sys_ncflint"
2593	}
2594
2595	#D-#==================================================
2596	#D-function IGCM_sys_ncks
2597	#D-* Purpose: encapsulate ncks call so as to manage error code and retry
2598	#D-* Examples:
2599	#D-
2600	function IGCM_sys_ncks {
2601	IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2602	if ( $DEBUG_sys ) ; then
2603	echo "IGCM_sys_ncks :" $@
2604	fi
2605
2606	typeset NB_ESSAI DELAI status i
2607	# number of tentative
2608	NB_ESSAI=3
2609	# time delay between tentative
2610	DELAI=2
2611
2612	i=0
2613	while [ $i -lt $NB_ESSAI ] ; do
2614	ncks $@ > out_rsync 2>&1
2615	status=$?
2616	if [ ${status} -gt 0 ] ; then
2617	IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2618	cat out_rsync
2619	\rm out_rsync
2620	IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2621	sleep $DELAI
2622	else
2623	\rm out_rsync
2624	break
2625	fi
2626	(( i = i + 1 ))
2627	done
2628
2629	if [ ${status} -gt 0 ] ; then
2630	echo "IGCM_sys_ncks : ncks error"
2631	IGCM_debug_Exit "ncks"
2632	fi
2633
2634	IGCM_debug_PopStack "IGCM_sys_ncks"
2635	}
2636
2637	#D-#==================================================
2638	#D-function IGCM_sys_ncpdq
2639	#D-* Purpose: encapsulate ncpdq call so as to manage error code and retry
2640	#D-* Examples:
2641	#D-
2642	function IGCM_sys_ncpdq {
2643	IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2644	if ( $DEBUG_sys ) ; then
2645	echo "IGCM_sys_ncpdq :" $@
2646	fi
2647
2648	typeset NB_ESSAI DELAI status i
2649	# number of tentative
2650	NB_ESSAI=3
2651	# time delay between tentative
2652	DELAI=2
2653
2654	i=0
2655	while [ $i -lt $NB_ESSAI ] ; do
2656	ncpdq $@ > out_rsync 2>&1
2657	status=$?
2658	if [ ${status} -gt 0 ] ; then
2659	IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2660	cat out_rsync
2661	\rm out_rsync
2662	IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2663	sleep $DELAI
2664	else
2665	\rm out_rsync
2666	break
2667	fi
2668	(( i = i + 1 ))
2669	done
2670
2671	if [ ${status} -gt 0 ] ; then
2672	echo "IGCM_sys_ncpdq : ncpdq error"
2673	IGCM_debug_Exit "ncpdq"
2674	fi
2675
2676	IGCM_debug_PopStack "IGCM_sys_ncpdq"
2677	}
2678
2679	#D-#==================================================
2680	#D-function IGCM_sys_ncra
2681	#D-* Purpose: encapsulate ncra call so as to manage error code and retry
2682	#D-* Examples:
2683	#D-
2684	function IGCM_sys_ncra {
2685	IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2686	if ( $DEBUG_sys ) ; then
2687	echo "IGCM_sys_ncra :" $@
2688	fi
2689
2690	typeset NB_ESSAI DELAI status i
2691	# number of tentative
2692	NB_ESSAI=3
2693	# time delay between tentative
2694	DELAI=2
2695
2696	i=0
2697	while [ $i -lt $NB_ESSAI ] ; do
2698	ncra $@ > out_rsync 2>&1
2699	status=$?
2700	if [ ${status} -gt 0 ] ; then
2701	IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2702	cat out_rsync
2703	\rm out_rsync
2704	IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2705	sleep $DELAI
2706	else
2707	\rm out_rsync
2708	break
2709	fi
2710	(( i = i + 1 ))
2711	done
2712
2713	if [ ${status} -gt 0 ] ; then
2714	echo "IGCM_sys_ncra : ncra error"
2715	IGCM_debug_Exit "ncra"
2716	fi
2717
2718	IGCM_debug_PopStack "IGCM_sys_ncra"
2719	}
2720
2721	#D-#==================================================
2722	#D-function IGCM_sys_ncrcat
2723	#D-* Purpose: encapsulate ncrcat call so as to manage error code and retry
2724	#D-* Examples:
2725	#D-
2726	function IGCM_sys_ncrcat {
2727	IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2728	if ( $DEBUG_sys ) ; then
2729	echo "IGCM_sys_ncrcat :" $@
2730	fi
2731
2732	typeset NB_ESSAI DELAI status i lastArg
2733	# number of tentative
2734	NB_ESSAI=3
2735	# time delay between tentative
2736	DELAI=2
2737
2738	i=0
2739	while [ $i -lt $NB_ESSAI ] ; do
2740	ncrcat $@ > out_rsync 2>&1
2741	status=$?
2742	if [ ${status} -gt 0 ] ; then
2743	IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2744	cat out_rsync
2745	\rm out_rsync
2746	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2747	sleep $DELAI
2748	elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then
2749	IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity"
2750	cat out_rsync
2751	# remove files having corrupted time axis
2752	eval lastArg=\${$#}
2753	IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}"
2754	\rm ${lastArg}
2755	\rm out_rsync
2756	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2757	sleep $DELAI
2758	else
2759	\rm out_rsync
2760	break
2761	fi
2762	(( i = i + 1 ))
2763	done
2764
2765	if [ ${status} -gt 0 ] ; then
2766	echo "IGCM_sys_ncrcat : ncrcat error"
2767	#IGCM_debug_Exit "ncrcat"
2768	fi
2769
2770	IGCM_debug_PopStack "IGCM_sys_ncrcat"
2771	}
2772
2773	#D-#==================================================
2774	#D-function IGCM_sys_ncrename
2775	#D-* Purpose: encapsulate ncrename call so as to manage error code and retry
2776	#D-* Examples:
2777	#D-
2778	function IGCM_sys_ncrename {
2779	IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
2780	if ( $DEBUG_sys ) ; then
2781	echo "IGCM_sys_ncrename :" $@
2782	fi
2783
2784	typeset NB_ESSAI DELAI status i
2785	# number of tentative
2786	NB_ESSAI=3
2787	# time delay between tentative
2788	DELAI=2
2789
2790	i=0
2791	while [ $i -lt $NB_ESSAI ] ; do
2792	ncrename $@ > out_rsync 2>&1
2793	status=$?
2794	if [ ${status} -gt 0 ] ; then
2795	IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
2796	cat out_rsync
2797	\rm out_rsync
2798	IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2799	sleep $DELAI
2800	else
2801	\rm out_rsync
2802	break
2803	fi
2804	(( i = i + 1 ))
2805	done
2806
2807	if [ ${status} -gt 0 ] ; then
2808	echo "IGCM_sys_ncrename : ncrename error"
2809	IGCM_debug_Exit "ncrename"
2810	fi
2811
2812	IGCM_debug_PopStack "IGCM_sys_ncrename"
2813	}
2814
2815	#D-#==================================================
2816	#D-function IGCM_sys_ncwa
2817	#D-* Purpose: encapsulate ncwa call so as to manage error code and retry
2818	#D-* Examples:
2819	#D-
2820	function IGCM_sys_ncwa {
2821	IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
2822	if ( $DEBUG_sys ) ; then
2823	echo "IGCM_sys_ncwa :" $@
2824	fi
2825
2826	typeset NB_ESSAI DELAI status i
2827	# number of tentative
2828	NB_ESSAI=3
2829	# time delay between tentative
2830	DELAI=2
2831
2832	i=0
2833	while [ $i -lt $NB_ESSAI ] ; do
2834	ncwa $@ > out_rsync 2>&1
2835	status=$?
2836	if [ ${status} -gt 0 ] ; then
2837	IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
2838	cat out_rsync
2839	\rm out_rsync
2840	IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2841	sleep $DELAI
2842	else
2843	\rm out_rsync
2844	break
2845	fi
2846	(( i = i + 1 ))
2847	done
2848
2849	if [ ${status} -gt 0 ] ; then
2850	echo "IGCM_sys_ncwa : ncwa error"
2851	IGCM_debug_Exit "ncwa"
2852	fi
2853
2854	IGCM_debug_PopStack "IGCM_sys_ncwa"
2855	}
2856
2857	##############################################################
2858	# CDO OPERATOR
2859
2860	#D-#==================================================
2861	#D-function IGCM_sys_cdo
2862	#D-* Purpose: encapsulate cdo call so as to manage error code and retry
2863	#D-* Examples:
2864	#D-
2865	function IGCM_sys_cdo {
2866	IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
2867	if ( $DEBUG_sys ) ; then
2868	echo "IGCM_sys_cdo :" $@
2869	fi
2870
2871	typeset status
2872
2873	\cdo $@ > out_rsync 2>&1
2874	status=$?
2875	if [ ${status} -gt 0 ] ; then
2876	echo "IGCM_sys_cdo : error code ${status}"
2877	cat out_rsync
2878	\rm out_rsync
2879	IGCM_debug_PopStack "IGCM_sys_cdo"
2880	return 1
2881	else
2882	IGCM_debug_PopStack "IGCM_sys_cdo"
2883	return 0
2884	fi
2885
2886	IGCM_debug_PopStack "IGCM_sys_cdo"
2887	}

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