[622] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
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| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[623] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[622] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[623] | 21 | #D-LibIGCM_sys for Curie |
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[622] | 22 | #D-#================================================== |
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| 23 | #D- |
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[623] | 24 | #D- This ksh library if a layer under some usefull |
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[622] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=curie |
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| 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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[742] | 77 | # Submit command |
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[747] | 78 | typeset SUBMIT=${SUBMIT:=ccc_msub} |
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[622] | 79 | # rsync with path |
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| 80 | typeset -r RSYNC=/usr/bin/rsync |
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| 81 | # RSYNC_opt args to rsync |
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| 82 | typeset -r RSYNC_opt="-va" |
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| 83 | # ie storage filesystem |
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[623] | 84 | typeset -r STOREHOST=${MASTER} |
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[622] | 85 | |
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| 86 | #==================================================== |
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| 87 | # Source default environment |
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| 88 | #==================================================== |
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| 89 | ##. /etc/profile |
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| 90 | |
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| 91 | #==================================================== |
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| 92 | # Set environment tools (ferret, nco, cdo) |
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| 93 | #==================================================== |
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[712] | 94 | if [ X${TaskType} = Xcomputing ] ; then |
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| 95 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_calcul_curie_ksh |
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[739] | 96 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64/bin |
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[712] | 97 | else |
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| 98 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_post_curie_ksh |
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| 99 | fi |
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[622] | 100 | |
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| 101 | #==================================================== |
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| 102 | # Specific for ocean additionnal diagnostic |
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| 103 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 104 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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| 105 | |
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| 106 | #==================================================== |
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| 107 | # Host specific DIRECTORIES |
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| 108 | #==================================================== |
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| 109 | |
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[623] | 110 | # ============ CESIUM START ============ # |
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| 111 | |
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[622] | 112 | #==================================================== |
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[623] | 113 | #- Mirror libIGCM from titane to cesium if needed |
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| 114 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 115 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 116 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 117 | #else |
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| 118 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 119 | #fi |
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| 120 | |
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| 121 | #==================================================== |
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| 122 | #- libIGCM_POST |
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| 123 | #if ( ${MirrorlibIGCM} ) ; then |
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| 124 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 125 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 126 | #else |
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| 127 | # typeset -r libIGCM_POST=${libIGCM} |
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| 128 | #fi |
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| 129 | |
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| 130 | # ============ CESIUM END ============ # |
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| 131 | |
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| 132 | #==================================================== |
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| 133 | #- MirrorlibIGCM for frontend |
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| 134 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 135 | |
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| 136 | #==================================================== |
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| 137 | #- libIGCM_POST for frontend |
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| 138 | typeset -r libIGCM_POST=${libIGCM} |
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| 139 | |
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| 140 | #==================================================== |
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[622] | 141 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 142 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 143 | |
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| 144 | #==================================================== |
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| 145 | #- SUBMIT_DIR : submission dir |
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| 146 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}} |
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| 147 | |
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| 148 | #==================================================== |
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| 149 | #- IN |
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| 150 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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| 151 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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| 152 | |
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| 153 | #==================================================== |
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[725] | 154 | #- ARCHIVE (dedicated to large files) |
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| 155 | typeset ARCHIVE=${CCCSTOREDIR} |
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| 156 | |
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| 157 | #==================================================== |
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| 158 | #- STORAGE (dedicated to small/medium files) |
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| 159 | typeset STORAGE=${CCCWORKDIR} |
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| 160 | |
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| 161 | #==================================================== |
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[623] | 162 | #- R_OUT |
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[725] | 163 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[622] | 164 | |
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| 165 | #==================================================== |
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[623] | 166 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[725] | 167 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[622] | 168 | |
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| 169 | #==================================================== |
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[623] | 170 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 171 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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| 172 | |
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| 173 | #==================================================== |
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[622] | 174 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[804] | 175 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}} |
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[622] | 176 | |
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| 177 | #==================================================== |
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| 178 | #- HOST_MPIRUN_COMMAND |
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[807] | 179 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="eval /usr/bin/time ccc_mprun -E'-K1'"} |
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[622] | 180 | |
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| 181 | #==================================================== |
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| 182 | #- Max number of arguments passed to nco operator or demigration command |
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| 183 | UNIX_MAX_LIMIT=360 |
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| 184 | |
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[623] | 185 | #==================================================== |
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| 186 | #- set PackDefault true on curie |
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| 187 | PackDefault=true |
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| 188 | |
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[664] | 189 | #==================================================== |
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| 190 | #- Number of core per node (max number of OpenMP task) |
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[622] | 191 | NUM_COREPERNODE=8 |
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| 192 | |
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[623] | 193 | #==================================================== |
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| 194 | #- Default number of MPI task for IPSL coupled model |
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| 195 | #- required for backward compatibility |
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| 196 | #- |
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| 197 | DEFAULT_NUM_PROC_OCE=5 |
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| 198 | DEFAULT_NUM_PROC_CPL=1 |
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[637] | 199 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 200 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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[623] | 201 | |
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[725] | 202 | #D-#================================================== |
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| 203 | #D-function IGCM_sys_ChangeArchive |
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| 204 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
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| 205 | #D-* Examples: |
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| 206 | #D- |
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| 207 | function IGCM_sys_ChangeArchive { |
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| 208 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
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[676] | 209 | |
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[743] | 210 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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| 211 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[725] | 212 | |
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| 213 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
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| 214 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
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| 215 | |
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| 216 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
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| 217 | } |
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| 218 | |
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[622] | 219 | #D-#================================================== |
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| 220 | #D-function IGCM_sys_RshMaster |
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[623] | 221 | #D-* Purpose: Connection to frontend machine. |
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[622] | 222 | #D-* Examples: |
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| 223 | #D- |
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| 224 | function IGCM_sys_RshMaster { |
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[623] | 225 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 226 | /bin/ksh <<-EOF |
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[622] | 227 | export libIGCM=${libIGCM} |
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| 228 | export DEBUG_debug=${DEBUG_debug} |
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| 229 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 230 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 231 | ${@} |
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| 232 | EOF |
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[623] | 233 | if [ $? -gt 0 ] ; then |
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| 234 | echo "IGCM_sys_RshMaster : erreur." |
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| 235 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 236 | fi |
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| 237 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[622] | 238 | } |
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| 239 | |
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| 240 | #D-#================================================== |
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| 241 | #D-function IGCM_sys_RshArchive |
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| 242 | #D-* Purpose: Archive rsh command |
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| 243 | #D-* Examples: |
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| 244 | #D- |
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| 245 | function IGCM_sys_RshArchive { |
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[623] | 246 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 247 | /bin/ksh <<-EOF |
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[622] | 248 | ${@} |
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| 249 | EOF |
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[623] | 250 | if [ $? -gt 0 ] ; then |
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| 251 | echo "IGCM_sys_RshArchive : erreur." |
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| 252 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 253 | fi |
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| 254 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[622] | 255 | } |
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| 256 | |
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| 257 | #D-#================================================== |
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| 258 | #D-function IGCM_sys_RshPost |
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| 259 | #D-* Purpose: Post-process rsh command |
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| 260 | #D-* Examples: |
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| 261 | #D- |
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| 262 | function IGCM_sys_RshPost { |
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[623] | 263 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 264 | if ( $DEBUG_sys ) ; then |
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| 265 | echo "IGCM_sys_RshPost :" $@ |
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| 266 | fi |
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[622] | 267 | |
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[623] | 268 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 269 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 270 | # keep standard input (stdin) for the loop onto temporary file |
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| 271 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 272 | |
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| 273 | # ============ FRONTEND START ============ # |
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| 274 | |
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| 275 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 276 | if [ $? -gt 0 ] ; then |
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| 277 | echo "IGCM_sys_RshPost : erreur." |
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| 278 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 279 | fi |
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| 280 | # delete temporary file |
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| 281 | \rm tmp_IGCM_sys_RshPost_$$ |
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| 282 | |
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| 283 | # ============ FRONTEND END ============ # |
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| 284 | |
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| 285 | # ============ CESIUM START ============ # |
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| 286 | # typeset NB_ESSAI DELAI status i |
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| 287 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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| 288 | # #little hack so that rebuild submission is done on titane not an cesium |
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| 289 | # |
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| 290 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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| 291 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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| 292 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 293 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 294 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 295 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 296 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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| 297 | # |
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| 298 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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| 299 | # cat tmp_IGCM_sys_RshPost_$$ |
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| 300 | # |
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| 301 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 302 | # if [ $? -gt 0 ] ; then |
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| 303 | # echo "IGCM_sys_RshPost : erreur." |
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| 304 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 305 | # fi |
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| 306 | # # delete temporary file |
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| 307 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 308 | # |
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| 309 | # else |
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| 310 | # # number of tentative |
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| 311 | # NB_ESSAI=10 |
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| 312 | # # time delay between tentative |
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| 313 | # DELAI=10 |
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| 314 | # i=0 |
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| 315 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 316 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 317 | # status=$? |
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| 318 | # if [ ${status} -ne 0 ]; |
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| 319 | # then |
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[785] | 320 | # sleep $DELAI |
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[623] | 321 | # else |
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[785] | 322 | # break |
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[623] | 323 | # fi |
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| 324 | # let i=$i+1 |
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| 325 | # done |
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| 326 | # # delete temporary file |
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| 327 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 328 | # |
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| 329 | # if [ ${status} -gt 0 ] ; then |
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| 330 | # echo "IGCM_sys_RshPost : erreur." |
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| 331 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 332 | # fi |
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| 333 | # fi |
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| 334 | |
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| 335 | # ============ CESIUM END ============ # |
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| 336 | |
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| 337 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[622] | 338 | } |
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| 339 | |
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| 340 | #D-#================================================== |
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| 341 | #D-function IGCM_sys_SendMail |
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| 342 | #D-* Purpose: Send mail when simulation is over |
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| 343 | #D-* Examples: |
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| 344 | #D- |
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| 345 | function IGCM_sys_SendMail { |
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[623] | 346 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 347 | if ( $DEBUG_sys ) ; then |
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| 348 | echo "IGCM_sys_SendMail :" $@ |
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| 349 | fi |
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[622] | 350 | |
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[623] | 351 | if ( ${ExitFlag} ) ; then |
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| 352 | status=failed |
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| 353 | else |
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| 354 | status=completed |
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| 355 | fi |
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[622] | 356 | |
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[623] | 357 | cat << END_MAIL > job_end.mail |
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[622] | 358 | Dear ${LOGIN}, |
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| 359 | |
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| 360 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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| 361 | Job started : ${DateBegin} |
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| 362 | Job ended : ${DateEnd} |
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| 363 | Output files are available in ${R_SAVE} |
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[623] | 364 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 365 | Pre-packed files are temporarily available in ${R_BUFR} |
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[622] | 366 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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| 367 | END_MAIL |
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| 368 | |
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[806] | 369 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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| 370 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 371 | elif [ -f ~/.forward ] ; then |
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| 372 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 373 | fi |
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| 374 | sleep 10 |
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| 375 | rm -f job_end.mail |
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| 376 | |
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[623] | 377 | if [ $? -gt 0 ] ; then |
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| 378 | echo "IGCM_sys_SendMail : erreur." |
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| 379 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 380 | fi |
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| 381 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[622] | 382 | } |
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| 383 | |
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| 384 | #D-#================================================== |
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| 385 | #D-function IGCM_sys_Mkdir |
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| 386 | #D-* Purpose: Master locale mkdir command |
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| 387 | #D-* Examples: |
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| 388 | #D- |
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| 389 | function IGCM_sys_Mkdir { |
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[623] | 390 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 391 | if ( $DEBUG_sys ) ; then |
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| 392 | echo "IGCM_sys_Mkdir :" $@ |
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| 393 | fi |
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| 394 | if [ ! -d ${1} ]; then |
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| 395 | \mkdir -p $1 |
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| 396 | if [ $? -gt 0 ] ; then |
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| 397 | echo "IGCM_sys_Mkdir : erreur." |
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| 398 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[622] | 399 | fi |
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[623] | 400 | fi |
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| 401 | # vérification : |
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| 402 | if [ ! -d ${1} ] ; then |
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| 403 | echo "IGCM_sys_Mkdir : erreur." |
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| 404 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 405 | fi |
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| 406 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[622] | 407 | } |
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| 408 | |
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| 409 | #D-#================================================== |
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| 410 | #D-function IGCM_sys_MkdirArchive |
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| 411 | #D-* Purpose: Mkdir on Archive |
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| 412 | #D-* Examples: |
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| 413 | #D- |
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| 414 | function IGCM_sys_MkdirArchive { |
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[623] | 415 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 416 | if ( $DEBUG_sys ) ; then |
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| 417 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 418 | fi |
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| 419 | #- creation de repertoire sur le serveur fichier |
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| 420 | if [ ! -d ${1} ]; then |
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| 421 | \mkdir -p $1 |
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| 422 | if [ $? -gt 0 ] ; then |
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| 423 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 424 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[622] | 425 | fi |
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[623] | 426 | fi |
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| 427 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[622] | 428 | } |
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| 429 | |
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| 430 | #D-#================================================== |
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| 431 | #D-function IGCM_sys_MkdirWork |
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| 432 | #D-* Purpose: Mkdir on Work |
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| 433 | #D-* Examples: |
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| 434 | #D- |
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| 435 | function IGCM_sys_MkdirWork { |
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[623] | 436 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
---|
| 437 | if ( $DEBUG_sys ) ; then |
---|
| 438 | echo "IGCM_sys_MkdirWork :" $@ |
---|
| 439 | fi |
---|
| 440 | #- creation de repertoire sur le serveur fichier |
---|
| 441 | if [ ! -d ${1} ]; then |
---|
| 442 | \mkdir -p $1 |
---|
| 443 | if [ $? -gt 0 ] ; then |
---|
| 444 | echo "IGCM_sys_MkdirWork : erreur." |
---|
| 445 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
---|
[622] | 446 | fi |
---|
[623] | 447 | fi |
---|
| 448 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
---|
[622] | 449 | } |
---|
| 450 | |
---|
| 451 | #D-#================================================== |
---|
| 452 | #D-function IGCM_sys_Cd |
---|
| 453 | #D-* Purpose: master cd command |
---|
| 454 | #D-* Examples: |
---|
| 455 | #D- |
---|
| 456 | function IGCM_sys_Cd { |
---|
[623] | 457 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 458 | if ( $DEBUG_sys ) ; then |
---|
| 459 | echo "IGCM_sys_Cd :" $@ |
---|
| 460 | fi |
---|
| 461 | \cd $1 |
---|
| 462 | if [ $? -gt 0 ] ; then |
---|
| 463 | echo "IGCM_sys_Cd : erreur." |
---|
| 464 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 465 | fi |
---|
| 466 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[622] | 467 | } |
---|
| 468 | |
---|
| 469 | #D-#================================================== |
---|
| 470 | #D-function IGCM_sys_Chmod |
---|
| 471 | #D-* Purpose: Chmod |
---|
| 472 | #D-* Examples: |
---|
| 473 | #D- |
---|
| 474 | function IGCM_sys_Chmod { |
---|
[623] | 475 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
---|
| 476 | if ( $DEBUG_sys ) ; then |
---|
| 477 | echo "IGCM_sys_Chmod :" $@ |
---|
| 478 | fi |
---|
| 479 | if [ $DRYRUN -le 1 ]; then |
---|
| 480 | \chmod $@ |
---|
| 481 | if [ $? -gt 0 ] ; then |
---|
| 482 | echo "IGCM_sys_Chmod : erreur." |
---|
| 483 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[622] | 484 | fi |
---|
[623] | 485 | else |
---|
| 486 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 487 | fi |
---|
| 488 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[622] | 489 | } |
---|
| 490 | |
---|
| 491 | #D-#================================================== |
---|
| 492 | #D-function IGCM_sys_FileSize |
---|
| 493 | #D-* Purpose: Filesize |
---|
| 494 | #D-* Examples: |
---|
| 495 | #D- |
---|
| 496 | function IGCM_sys_FileSize { |
---|
[623] | 497 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[622] | 498 | |
---|
[623] | 499 | typeset sizeF |
---|
| 500 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 501 | if [ $? -gt 0 ] ; then |
---|
| 502 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 503 | fi |
---|
| 504 | eval ${2}=${sizeF[4]} |
---|
[622] | 505 | |
---|
[623] | 506 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[622] | 507 | } |
---|
| 508 | |
---|
| 509 | #D-#================================================== |
---|
| 510 | #D-function IGCM_sys_TestDir |
---|
| 511 | #D-* Purpose: Test Directory that must exists |
---|
| 512 | #D-* Examples: |
---|
| 513 | #D- |
---|
| 514 | function IGCM_sys_TestDir { |
---|
[623] | 515 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 516 | if ( $DEBUG_sys ) ; then |
---|
| 517 | echo "IGCM_sys_TestDir :" $@ |
---|
| 518 | fi |
---|
| 519 | typeset ExistFlag |
---|
| 520 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 521 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[622] | 522 | |
---|
[623] | 523 | return ${ExistFlag} |
---|
[622] | 524 | } |
---|
| 525 | |
---|
| 526 | #D-#================================================== |
---|
| 527 | #D-function IGCM_sys_TestDirArchive |
---|
| 528 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 529 | #D-* Examples: |
---|
| 530 | #D- |
---|
| 531 | function IGCM_sys_TestDirArchive { |
---|
[623] | 532 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 533 | if ( $DEBUG_sys ) ; then |
---|
| 534 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 535 | fi |
---|
| 536 | typeset ExistFlag |
---|
| 537 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 538 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[622] | 539 | |
---|
[623] | 540 | return ${ExistFlag} |
---|
[622] | 541 | } |
---|
| 542 | |
---|
| 543 | #D-#================================================== |
---|
[623] | 544 | #D-function IGCM_sys_IsFileArchived |
---|
| 545 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 546 | #D-* Examples: |
---|
| 547 | #D- |
---|
| 548 | function IGCM_sys_IsFileArchived { |
---|
| 549 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 550 | if ( $DEBUG_sys ) ; then |
---|
| 551 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 552 | fi |
---|
| 553 | typeset IsArchivedFlag |
---|
| 554 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
| 555 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 556 | |
---|
| 557 | return ${IsArchivedFlag} |
---|
| 558 | } |
---|
| 559 | |
---|
| 560 | #D-#================================================== |
---|
[622] | 561 | #D-function IGCM_sys_TestFileArchive |
---|
| 562 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 563 | #D-* Examples: |
---|
| 564 | #D- |
---|
| 565 | function IGCM_sys_TestFileArchive { |
---|
[623] | 566 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 567 | typeset ExistFlag |
---|
| 568 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 569 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[622] | 570 | |
---|
[623] | 571 | return ${ExistFlag} |
---|
[622] | 572 | } |
---|
| 573 | |
---|
| 574 | #D-#================================================== |
---|
[623] | 575 | #D-function IGCM_sys_TestFileBuffer |
---|
| 576 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 577 | #D-* Examples: |
---|
| 578 | #D- |
---|
| 579 | function IGCM_sys_TestFileBuffer { |
---|
| 580 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 581 | typeset ExistFlag |
---|
| 582 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 583 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 584 | |
---|
| 585 | return ${ExistFlag} |
---|
| 586 | } |
---|
| 587 | |
---|
| 588 | #D-#================================================== |
---|
[622] | 589 | #D-function IGCM_sys_CountFileArchive |
---|
| 590 | #D-* Purpose: Count files on Archive filesystem |
---|
| 591 | #D-* Examples: |
---|
| 592 | #D- |
---|
| 593 | function IGCM_sys_CountFileArchive { |
---|
[623] | 594 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 595 | ls ${@} 2>/dev/null | wc -l |
---|
| 596 | if [ $? -gt 0 ] ; then |
---|
| 597 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 598 | fi |
---|
| 599 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[622] | 600 | } |
---|
| 601 | |
---|
| 602 | #D-#================================================== |
---|
[623] | 603 | #D-function IGCM_sys_CountFileBuffer |
---|
| 604 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 605 | #D-* Examples: |
---|
| 606 | #D- |
---|
| 607 | function IGCM_sys_CountFileBuffer { |
---|
| 608 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 609 | ls ${@} 2>/dev/null | wc -l |
---|
| 610 | if [ $? -gt 0 ] ; then |
---|
| 611 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 612 | fi |
---|
| 613 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 614 | } |
---|
| 615 | |
---|
| 616 | #D-#================================================== |
---|
[622] | 617 | #D-function IGCM_sys_Tree |
---|
| 618 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 619 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 620 | #D- |
---|
| 621 | function IGCM_sys_Tree { |
---|
[623] | 622 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 623 | if ( $DEBUG_sys ) ; then |
---|
| 624 | echo "IGCM_sys_Tree :" $@ |
---|
| 625 | fi |
---|
[622] | 626 | |
---|
[623] | 627 | \ls -lR ${@} |
---|
[622] | 628 | |
---|
[623] | 629 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[622] | 630 | } |
---|
| 631 | |
---|
| 632 | #D-#================================================== |
---|
| 633 | #D-function IGCM_sys_Tar |
---|
[623] | 634 | #D-* Purpose: master tar command |
---|
[622] | 635 | #D-* Examples: |
---|
| 636 | #D- |
---|
| 637 | function IGCM_sys_Tar { |
---|
[623] | 638 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 639 | if ( $DEBUG_sys ) ; then |
---|
| 640 | echo "IGCM_sys_Tar :" $@ |
---|
| 641 | fi |
---|
| 642 | \tar cf $@ |
---|
| 643 | if [ $? -gt 0 ] ; then |
---|
| 644 | echo "IGCM_sys_Tar : erreur." |
---|
| 645 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 646 | fi |
---|
| 647 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[622] | 648 | } |
---|
| 649 | |
---|
| 650 | #D-#================================================== |
---|
| 651 | #D-function IGCM_sys_UnTar |
---|
| 652 | #D-* Purpose: master un-tar command |
---|
| 653 | #D-* Examples: |
---|
| 654 | #D- |
---|
| 655 | function IGCM_sys_UnTar { |
---|
[623] | 656 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 657 | if ( $DEBUG_sys ) ; then |
---|
| 658 | echo "IGCM_sys_UnTar :" $@ |
---|
| 659 | fi |
---|
| 660 | \tar xvf $1 |
---|
| 661 | if [ $? -gt 0 ] ; then |
---|
| 662 | echo "IGCM_sys_UnTar : erreur." |
---|
| 663 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 664 | fi |
---|
| 665 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[622] | 666 | } |
---|
| 667 | |
---|
| 668 | #D-#================================================== |
---|
| 669 | #D-function IGCM_sys_Qsub |
---|
| 670 | #D-* Purpose: Qsub new job |
---|
| 671 | #D-* Examples: |
---|
| 672 | #D- |
---|
| 673 | function IGCM_sys_Qsub { |
---|
[623] | 674 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 675 | if ( $DEBUG_sys ) ; then |
---|
| 676 | echo "IGCM_sys_Qsub :" $@ |
---|
| 677 | fi |
---|
| 678 | typeset options |
---|
| 679 | if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then |
---|
| 680 | options=" -o ${Script_Output} -e ${Script_Output}" |
---|
| 681 | else |
---|
| 682 | options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}" |
---|
| 683 | fi |
---|
[622] | 684 | |
---|
[625] | 685 | /usr/bin/ccc_msub ${options} < $1 |
---|
[623] | 686 | if [ $? -gt 0 ] ; then |
---|
| 687 | echo "IGCM_sys_Qsub : erreur ${options} $1" |
---|
| 688 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 689 | fi |
---|
| 690 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[622] | 691 | } |
---|
| 692 | |
---|
| 693 | #D-#================================================== |
---|
| 694 | #D-function IGCM_sys_QsubPost |
---|
| 695 | #D-* Purpose: Qsub new job on scalaire |
---|
| 696 | #D-* Examples: |
---|
| 697 | #D- |
---|
| 698 | function IGCM_sys_QsubPost { |
---|
[623] | 699 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 700 | if ( $DEBUG_sys ) ; then |
---|
| 701 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 702 | fi |
---|
[773] | 703 | MY_PROJECT=$(echo ${BRIDGE_MSUB_PROJECT} | cut -d@ -f1 ) |
---|
[767] | 704 | /usr/bin/ccc_msub -Q normal -A ${MY_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job |
---|
[623] | 705 | if [ $? -gt 0 ] ; then |
---|
| 706 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 707 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 708 | fi |
---|
| 709 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[622] | 710 | } |
---|
| 711 | |
---|
| 712 | #D-************************* |
---|
[623] | 713 | #D- File transfer functions |
---|
[622] | 714 | #D-************************* |
---|
| 715 | #D- |
---|
| 716 | |
---|
| 717 | #D-#================================================== |
---|
| 718 | #D-function IGCM_sys_Rsync_out |
---|
| 719 | #D-* Purpose: treat return val of rsync |
---|
| 720 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 721 | #D- Error values and explanations can depend on your system version. |
---|
| 722 | function IGCM_sys_Rsync_out { |
---|
[719] | 723 | status=$1 |
---|
| 724 | if [ ! $status ] ; then |
---|
[623] | 725 | echo "rsync error !" |
---|
| 726 | fi |
---|
[622] | 727 | |
---|
[623] | 728 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 729 | case $status in |
---|
[623] | 730 | 0) return ;; |
---|
| 731 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 732 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 733 | return;; |
---|
| 734 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 735 | echo "Incompatibilité de protocole." |
---|
| 736 | return;; |
---|
| 737 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 738 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 739 | echo "répertoires" |
---|
| 740 | return;; |
---|
| 741 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 742 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 743 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 744 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 745 | echo "pas par le serveur a été spécifiée." |
---|
| 746 | return;; |
---|
| 747 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 748 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 749 | return;; |
---|
| 750 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 751 | echo "Erreur d'entrée sortie fichier" |
---|
| 752 | return;; |
---|
| 753 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 754 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 755 | return;; |
---|
| 756 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 757 | echo "Erreur avec les diagnostics du programme" |
---|
| 758 | return;; |
---|
| 759 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 760 | echo "Erreur dans le code IPC" |
---|
| 761 | return;; |
---|
| 762 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 763 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 764 | return;; |
---|
| 765 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 766 | echo "Une erreur retournée par waitpid()" |
---|
| 767 | return;; |
---|
| 768 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 769 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 770 | return;; |
---|
| 771 | 23) echo "" |
---|
| 772 | echo "Erreur fichier inexistant" |
---|
| 773 | return;; |
---|
| 774 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 775 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 776 | return;; |
---|
[719] | 777 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[623] | 778 | return;; |
---|
| 779 | esac |
---|
| 780 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 781 | case $status in |
---|
[623] | 782 | 0) return;; |
---|
| 783 | 1) echo "rsync error : Syntax or usage error " |
---|
| 784 | return;; |
---|
| 785 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 786 | return;; |
---|
| 787 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 788 | return;; |
---|
| 789 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 790 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 791 | echo "them; or an option was specified that is supported by the client and" |
---|
| 792 | echo "not by the server." |
---|
| 793 | return;; |
---|
| 794 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 795 | return;; |
---|
| 796 | 10) echo "rsync error : Error in socket I/O " |
---|
| 797 | return;; |
---|
| 798 | 11) echo "rsync error : Error in file I/O " |
---|
| 799 | return;; |
---|
| 800 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 801 | return;; |
---|
| 802 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 803 | return;; |
---|
| 804 | 14) echo "rsync error : Error in IPC code " |
---|
| 805 | return;; |
---|
| 806 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 807 | return;; |
---|
| 808 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 809 | return;; |
---|
| 810 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 811 | return;; |
---|
| 812 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 813 | return;; |
---|
| 814 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 815 | return;; |
---|
| 816 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 817 | return;; |
---|
[719] | 818 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[623] | 819 | return;; |
---|
| 820 | esac |
---|
| 821 | else |
---|
| 822 | echo "unknown language $MYLANG." |
---|
| 823 | return |
---|
| 824 | fi |
---|
[622] | 825 | } |
---|
| 826 | |
---|
| 827 | #D-#================================================== |
---|
| 828 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 829 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 830 | #D-* Examples: |
---|
| 831 | #D- |
---|
| 832 | function IGCM_sys_Mirror_libIGCM { |
---|
[623] | 833 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 834 | if ( $DEBUG_sys ) ; then |
---|
| 835 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 836 | fi |
---|
[622] | 837 | |
---|
[773] | 838 | typeset status |
---|
[622] | 839 | |
---|
[623] | 840 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[622] | 841 | |
---|
[623] | 842 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 843 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
[715] | 844 | status=$? |
---|
[622] | 845 | |
---|
[715] | 846 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 847 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 848 | cat out_rsync |
---|
| 849 | fi |
---|
| 850 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[622] | 851 | } |
---|
| 852 | |
---|
| 853 | #D-#================================================== |
---|
| 854 | #D-function IGCM_sys_Cp |
---|
| 855 | #D-* Purpose: generic cp |
---|
| 856 | #D-* Examples: |
---|
| 857 | #D- |
---|
| 858 | function IGCM_sys_Cp { |
---|
[623] | 859 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 860 | if ( $DEBUG_sys ) ; then |
---|
| 861 | echo "IGCM_sys_Cp :" $@ |
---|
| 862 | fi |
---|
[622] | 863 | |
---|
[715] | 864 | typeset status |
---|
[622] | 865 | |
---|
[623] | 866 | echo cp $@ > out_rsync 2>&1 |
---|
| 867 | \cp $@ >> out_rsync 2>&1 |
---|
[715] | 868 | status=$? |
---|
[622] | 869 | |
---|
[715] | 870 | if [ ${status} -gt 0 ] ; then |
---|
| 871 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[623] | 872 | cat out_rsync |
---|
| 873 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 874 | else |
---|
| 875 | \rm out_rsync |
---|
| 876 | fi |
---|
| 877 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[622] | 878 | } |
---|
| 879 | |
---|
| 880 | #D-#================================================== |
---|
| 881 | #D-function IGCM_sys_Rm |
---|
| 882 | #D-* Purpose: generic rm |
---|
| 883 | #D-* Examples: |
---|
| 884 | #D- |
---|
| 885 | function IGCM_sys_Rm { |
---|
[623] | 886 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 887 | if ( $DEBUG_sys ) ; then |
---|
| 888 | echo "IGCM_sys_Rm :" $@ |
---|
| 889 | fi |
---|
[622] | 890 | |
---|
[715] | 891 | typeset status |
---|
[622] | 892 | |
---|
[623] | 893 | echo rm $@ > out_rsync 2>&1 |
---|
| 894 | \rm $@ >> out_rsync 2>&1 |
---|
[715] | 895 | status=$? |
---|
[622] | 896 | |
---|
[715] | 897 | if [ ${status} -gt 0 ] ; then |
---|
| 898 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[623] | 899 | cat out_rsync |
---|
| 900 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 901 | else |
---|
| 902 | \rm out_rsync |
---|
| 903 | fi |
---|
| 904 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[622] | 905 | } |
---|
| 906 | |
---|
| 907 | #D-#================================================== |
---|
| 908 | #D-function IGCM_sys_RmRunDir |
---|
| 909 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 910 | #D- scheduler will do the job) |
---|
| 911 | #D-* Examples: |
---|
| 912 | #D- |
---|
| 913 | function IGCM_sys_RmRunDir { |
---|
[623] | 914 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 915 | if ( $DEBUG_sys ) ; then |
---|
| 916 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 917 | fi |
---|
[622] | 918 | |
---|
[715] | 919 | typeset status |
---|
[622] | 920 | |
---|
[623] | 921 | echo rm $@ > out_rsync 2>&1 |
---|
| 922 | \rm $@ >> out_rsync 2>&1 |
---|
[715] | 923 | status=$? |
---|
[622] | 924 | |
---|
[715] | 925 | if [ ${status} -gt 0 ] ; then |
---|
| 926 | echo "IGCM_sys_RmRunDir : error code ${status}" |
---|
[623] | 927 | cat out_rsync |
---|
| 928 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 929 | else |
---|
| 930 | \rm out_rsync |
---|
| 931 | fi |
---|
| 932 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[622] | 933 | } |
---|
| 934 | |
---|
| 935 | #D-#================================================== |
---|
| 936 | #D-function IGCM_sys_Mv |
---|
| 937 | #D-* Purpose: generic move |
---|
| 938 | #D-* Examples: |
---|
| 939 | #D- |
---|
| 940 | function IGCM_sys_Mv { |
---|
[623] | 941 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 942 | if ( $DEBUG_sys ) ; then |
---|
| 943 | echo "IGCM_sys_Mv :" $@ |
---|
| 944 | fi |
---|
[622] | 945 | |
---|
[623] | 946 | if [ $DRYRUN = 0 ]; then |
---|
[622] | 947 | |
---|
[715] | 948 | typeset status |
---|
[623] | 949 | |
---|
| 950 | echo mv $@ > out_rsync 2>&1 |
---|
| 951 | \mv $@ >> out_rsync 2>&1 |
---|
[715] | 952 | status=$? |
---|
[623] | 953 | |
---|
[715] | 954 | if [ ${status} -gt 0 ] ; then |
---|
| 955 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[623] | 956 | cat out_rsync |
---|
| 957 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[622] | 958 | else |
---|
[623] | 959 | \rm out_rsync |
---|
[622] | 960 | fi |
---|
[623] | 961 | else |
---|
| 962 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 963 | fi |
---|
[622] | 964 | |
---|
[623] | 965 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[622] | 966 | } |
---|
| 967 | |
---|
| 968 | #D-#================================================== |
---|
| 969 | #D-function IGCM_sys_Put_Dir |
---|
| 970 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 971 | #D-* Examples: |
---|
| 972 | #D- |
---|
| 973 | function IGCM_sys_Put_Dir { |
---|
[623] | 974 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 975 | if ( $DEBUG_sys ) ; then |
---|
| 976 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 977 | fi |
---|
| 978 | if [ $DRYRUN = 0 ]; then |
---|
| 979 | if [ ! -d ${1} ] ; then |
---|
| 980 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 981 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 982 | return |
---|
[622] | 983 | fi |
---|
| 984 | |
---|
[715] | 985 | typeset status |
---|
[622] | 986 | |
---|
[623] | 987 | # Only if we use rsync |
---|
| 988 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 989 | # |
---|
| 990 | #USUAL WAY |
---|
| 991 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
[715] | 992 | status=$? |
---|
[622] | 993 | |
---|
[715] | 994 | if [ ${status} -gt 0 ] ; then |
---|
| 995 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[623] | 996 | cat out_rsync |
---|
| 997 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[622] | 998 | else |
---|
[623] | 999 | \rm out_rsync |
---|
[622] | 1000 | fi |
---|
[623] | 1001 | else |
---|
| 1002 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1003 | fi |
---|
| 1004 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[622] | 1005 | } |
---|
| 1006 | |
---|
| 1007 | #D-#================================================== |
---|
| 1008 | #D-function IGCM_sys_Get_Dir |
---|
[623] | 1009 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[622] | 1010 | #D-* Examples: |
---|
| 1011 | #D- |
---|
| 1012 | function IGCM_sys_Get_Dir { |
---|
[623] | 1013 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 1014 | if ( $DEBUG_sys ) ; then |
---|
| 1015 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 1016 | fi |
---|
| 1017 | if [ $DRYRUN = 0 ]; then |
---|
| 1018 | # if [ ! -d ${1} ] ; then |
---|
| 1019 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 1020 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 1021 | # return |
---|
| 1022 | # fi |
---|
[622] | 1023 | |
---|
[708] | 1024 | typeset NB_ESSAI DELAI status i |
---|
| 1025 | # number of tentative |
---|
| 1026 | NB_ESSAI=3 |
---|
| 1027 | # time delay between tentative |
---|
| 1028 | DELAI=2 |
---|
[622] | 1029 | |
---|
[676] | 1030 | # Only if we use rsync |
---|
| 1031 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1032 | # |
---|
[708] | 1033 | # USUAL WAY |
---|
| 1034 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
[713] | 1035 | ccc_hsm get -r $1 |
---|
[622] | 1036 | |
---|
[709] | 1037 | i=0 |
---|
[708] | 1038 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1039 | \cp -ur $1 $2 >> out_rsync 2>&1 |
---|
| 1040 | status=$? |
---|
| 1041 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1042 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[708] | 1043 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 1044 | sleep $DELAI |
---|
| 1045 | else |
---|
| 1046 | break |
---|
| 1047 | fi |
---|
| 1048 | (( i = i + 1 )) |
---|
| 1049 | done |
---|
| 1050 | |
---|
| 1051 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1052 | echo "IGCM_sys_Get_Dir : error." |
---|
| 1053 | cat out_rsync |
---|
| 1054 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[622] | 1055 | else |
---|
[623] | 1056 | \rm out_rsync |
---|
[622] | 1057 | fi |
---|
[623] | 1058 | else |
---|
| 1059 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1060 | fi |
---|
| 1061 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[622] | 1062 | } |
---|
| 1063 | |
---|
| 1064 | #D-#================================================== |
---|
| 1065 | #D-function IGCM_sys_Get_Master |
---|
| 1066 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 1067 | #D-* Examples: |
---|
| 1068 | #D- |
---|
| 1069 | function IGCM_sys_Get_Master { |
---|
[623] | 1070 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 1071 | if ( $DEBUG_sys ) ; then |
---|
| 1072 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 1073 | fi |
---|
| 1074 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 1075 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[623] | 1076 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 1077 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 1078 | return |
---|
[622] | 1079 | fi |
---|
| 1080 | |
---|
[708] | 1081 | typeset NB_ESSAI DELAI status i |
---|
| 1082 | # number of tentative |
---|
| 1083 | NB_ESSAI=3 |
---|
| 1084 | # time delay between tentative |
---|
| 1085 | DELAI=2 |
---|
[622] | 1086 | |
---|
[709] | 1087 | i=0 |
---|
[708] | 1088 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1089 | \cp -urL $1 $2 > out_rsync 2>&1 |
---|
| 1090 | status=$? |
---|
| 1091 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1092 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[708] | 1093 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 1094 | sleep $DELAI |
---|
| 1095 | else |
---|
| 1096 | break |
---|
| 1097 | fi |
---|
| 1098 | (( i = i + 1 )) |
---|
| 1099 | done |
---|
[622] | 1100 | |
---|
[708] | 1101 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1102 | echo "IGCM_sys_Get_Master : error." |
---|
| 1103 | cat out_rsync |
---|
| 1104 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[622] | 1105 | else |
---|
[623] | 1106 | \rm out_rsync |
---|
[622] | 1107 | fi |
---|
[623] | 1108 | else |
---|
| 1109 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1110 | fi |
---|
| 1111 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[622] | 1112 | } |
---|
| 1113 | |
---|
[689] | 1114 | #==================================================== |
---|
| 1115 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1116 | if ( $MirrorlibIGCM ) ; then |
---|
| 1117 | IGCM_sys_Mirror_libIGCM |
---|
| 1118 | fi |
---|
| 1119 | |
---|
[622] | 1120 | #D-#================================================== |
---|
| 1121 | #D-function IGCM_sys_Put_Rest |
---|
[623] | 1122 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[622] | 1123 | #D- File and target directory must exist. |
---|
| 1124 | #D-* Examples: |
---|
| 1125 | #D- |
---|
| 1126 | function IGCM_sys_Put_Rest { |
---|
[623] | 1127 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1128 | if ( $DEBUG_sys ) ; then |
---|
| 1129 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1130 | fi |
---|
| 1131 | if [ $DRYRUN = 0 ]; then |
---|
| 1132 | if [ ! -f ${1} ] ; then |
---|
| 1133 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1134 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1135 | fi |
---|
| 1136 | |
---|
[715] | 1137 | typeset status |
---|
[623] | 1138 | # |
---|
| 1139 | # USUAL WAY |
---|
| 1140 | \cp $1 $2 > out_rsync 2>&1 |
---|
[715] | 1141 | status=$? |
---|
[622] | 1142 | |
---|
[623] | 1143 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1144 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1145 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[622] | 1146 | |
---|
[623] | 1147 | # #RSYNC WITH NFS USE |
---|
| 1148 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1149 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[622] | 1150 | |
---|
[715] | 1151 | # status=$? |
---|
| 1152 | # IGCM_sys_Rsync_out $status |
---|
[622] | 1153 | |
---|
[623] | 1154 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[715] | 1155 | # (( status=status+$? )) |
---|
[623] | 1156 | |
---|
[715] | 1157 | if [ ${status} -gt 0 ] ; then |
---|
| 1158 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[765] | 1159 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1160 | [ -f ${2} ] && ls -l ${2} |
---|
| 1161 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[623] | 1162 | cat out_rsync |
---|
| 1163 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1164 | else |
---|
[759] | 1165 | |
---|
| 1166 | if [ X${JobType} = XRUN ] ; then |
---|
| 1167 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1168 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1169 | fi |
---|
| 1170 | |
---|
[623] | 1171 | \rm out_rsync |
---|
[622] | 1172 | fi |
---|
[623] | 1173 | else |
---|
| 1174 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1175 | fi |
---|
| 1176 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[622] | 1177 | } |
---|
| 1178 | |
---|
| 1179 | #D-#================================================== |
---|
[623] | 1180 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1181 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1182 | #D- File and target directory must exist. |
---|
| 1183 | #D-* Examples: |
---|
| 1184 | #D- |
---|
| 1185 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1186 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1187 | if ( $DEBUG_sys ) ; then |
---|
| 1188 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1189 | fi |
---|
| 1190 | if [ $DRYRUN = 0 ]; then |
---|
| 1191 | if [ ! -f ${1} ] ; then |
---|
| 1192 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1193 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1194 | fi |
---|
| 1195 | |
---|
[715] | 1196 | typeset status |
---|
[623] | 1197 | # |
---|
| 1198 | # USUAL WAY |
---|
| 1199 | \cp $1 $2 > out_rsync 2>&1 |
---|
[715] | 1200 | status=$? |
---|
[623] | 1201 | |
---|
[715] | 1202 | if [ ${status} -gt 0 ] ; then |
---|
| 1203 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[759] | 1204 | [ -f ${2} ] && ls -l ${2} |
---|
| 1205 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[623] | 1206 | cat out_rsync |
---|
| 1207 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1208 | else |
---|
[759] | 1209 | |
---|
| 1210 | if [ X${JobType} = XRUN ] ; then |
---|
| 1211 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1212 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1213 | fi |
---|
| 1214 | |
---|
[623] | 1215 | \rm out_rsync |
---|
| 1216 | fi |
---|
| 1217 | else |
---|
| 1218 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1219 | fi |
---|
| 1220 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1221 | } |
---|
| 1222 | |
---|
| 1223 | #D-#================================================== |
---|
[801] | 1224 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1225 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1226 | #D-* Examples: |
---|
| 1227 | #D- |
---|
| 1228 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1229 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
[802] | 1230 | if [ $DRYRUN = 0 ]; then |
---|
| 1231 | [ ! -f $( basename $1 ) ] && DEBUG_sys=false IGCM_sys_Get $1 . |
---|
| 1232 | else |
---|
| 1233 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1234 | fi |
---|
| 1235 | echo $( basename $1 ) |
---|
[801] | 1236 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1237 | } |
---|
| 1238 | |
---|
| 1239 | #D-#================================================== |
---|
[622] | 1240 | #D-function IGCM_sys_Put_Out |
---|
[623] | 1241 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[622] | 1242 | #D-* Examples: |
---|
| 1243 | #D- |
---|
| 1244 | function IGCM_sys_Put_Out { |
---|
[623] | 1245 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1246 | if ( $DEBUG_sys ) ; then |
---|
| 1247 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1248 | fi |
---|
[667] | 1249 | |
---|
[711] | 1250 | typeset NB_ESSAI DELAI status i exist skip |
---|
[667] | 1251 | |
---|
| 1252 | # number of tentative |
---|
[668] | 1253 | NB_ESSAI=3 |
---|
[667] | 1254 | # time delay between tentative |
---|
[668] | 1255 | DELAI=2 |
---|
[667] | 1256 | |
---|
[623] | 1257 | if [ $DRYRUN = 0 ]; then |
---|
| 1258 | if [ ! -f ${1} ] ; then |
---|
| 1259 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1260 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1261 | return 1 |
---|
[622] | 1262 | fi |
---|
[623] | 1263 | # |
---|
| 1264 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1265 | # |
---|
[622] | 1266 | |
---|
[623] | 1267 | #===================================================== |
---|
| 1268 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1269 | #===================================================== |
---|
[622] | 1270 | |
---|
[623] | 1271 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1272 | #if [ $? -eq 0 ] ; then |
---|
| 1273 | # typeset WORKPATH FILEPATH |
---|
| 1274 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
| 1275 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 1276 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1277 | # # |
---|
| 1278 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1279 | #fi |
---|
[622] | 1280 | |
---|
[711] | 1281 | exist=false |
---|
| 1282 | skip=false |
---|
| 1283 | if [ -f $2 ] ; then |
---|
| 1284 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1285 | #dmget $2 |
---|
| 1286 | ccc_hsm get $2 |
---|
| 1287 | exist=true |
---|
| 1288 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1289 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1290 | skip=true |
---|
[667] | 1291 | else |
---|
[711] | 1292 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1293 | skip=false |
---|
[667] | 1294 | fi |
---|
[711] | 1295 | fi |
---|
| 1296 | # |
---|
| 1297 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1298 | IGCM_sys_Chmod u+w $2 |
---|
| 1299 | fi |
---|
[622] | 1300 | |
---|
[711] | 1301 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1302 | i=0 |
---|
[711] | 1303 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1304 | # USUAL WAY |
---|
| 1305 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1306 | status=$? |
---|
| 1307 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1308 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[711] | 1309 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
[765] | 1310 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1311 | [ -f ${2} ] && ls -l ${2} |
---|
| 1312 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[711] | 1313 | sleep $DELAI |
---|
| 1314 | else |
---|
| 1315 | break |
---|
| 1316 | fi |
---|
| 1317 | (( i = i + 1 )) |
---|
| 1318 | done |
---|
| 1319 | fi |
---|
| 1320 | |
---|
[623] | 1321 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1322 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1323 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[622] | 1324 | |
---|
[623] | 1325 | # #RSYNC WITH NFS USE |
---|
| 1326 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1327 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[622] | 1328 | |
---|
[711] | 1329 | # status=$? |
---|
| 1330 | # IGCM_sys_Rsync_out $status |
---|
[622] | 1331 | |
---|
[623] | 1332 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[711] | 1333 | # (( status=status+$? )) |
---|
[622] | 1334 | |
---|
[711] | 1335 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1336 | echo "IGCM_sys_Put_Out : error." |
---|
[765] | 1337 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1338 | [ -f ${2} ] && ls -l ${2} |
---|
| 1339 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[623] | 1340 | cat out_rsync |
---|
| 1341 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[622] | 1342 | else |
---|
[759] | 1343 | |
---|
| 1344 | if [ X${JobType} = XRUN ] ; then |
---|
| 1345 | if [ X${3} = X ] ; then |
---|
| 1346 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1347 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1348 | fi |
---|
| 1349 | fi |
---|
| 1350 | |
---|
[623] | 1351 | \rm out_rsync |
---|
[622] | 1352 | fi |
---|
[623] | 1353 | else |
---|
| 1354 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1355 | fi |
---|
| 1356 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1357 | return 0 |
---|
[622] | 1358 | } |
---|
| 1359 | |
---|
| 1360 | #D-#================================================== |
---|
[623] | 1361 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1362 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1363 | #D-* Examples: |
---|
| 1364 | #D- |
---|
| 1365 | function IGCM_sys_PutBuffer_Out { |
---|
| 1366 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1367 | if ( $DEBUG_sys ) ; then |
---|
| 1368 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1369 | fi |
---|
[711] | 1370 | |
---|
[773] | 1371 | typeset NB_ESSAI DELAI status i exist skip |
---|
[711] | 1372 | |
---|
| 1373 | # number of tentative |
---|
| 1374 | NB_ESSAI=3 |
---|
| 1375 | # time delay between tentative |
---|
| 1376 | DELAI=2 |
---|
| 1377 | |
---|
[623] | 1378 | if [ $DRYRUN = 0 ]; then |
---|
| 1379 | if [ ! -f ${1} ] ; then |
---|
| 1380 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1381 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1382 | return 1 |
---|
| 1383 | fi |
---|
| 1384 | # |
---|
| 1385 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1386 | # |
---|
| 1387 | |
---|
[711] | 1388 | exist=false |
---|
| 1389 | skip=false |
---|
| 1390 | if [ -f $2 ] ; then |
---|
| 1391 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1392 | exist=true |
---|
| 1393 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1394 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1395 | skip=true |
---|
| 1396 | else |
---|
| 1397 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1398 | skip=false |
---|
| 1399 | fi |
---|
| 1400 | fi |
---|
[623] | 1401 | # |
---|
[711] | 1402 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1403 | IGCM_sys_Chmod u+w $2 |
---|
| 1404 | fi |
---|
[623] | 1405 | |
---|
[711] | 1406 | if [ X${skip} = Xfalse ] ; then |
---|
| 1407 | i=0 |
---|
| 1408 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1409 | # USUAL WAY |
---|
| 1410 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1411 | status=$? |
---|
| 1412 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1413 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[711] | 1414 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
[759] | 1415 | [ -f ${2} ] && ls -l ${2} |
---|
| 1416 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[711] | 1417 | sleep $DELAI |
---|
| 1418 | else |
---|
| 1419 | break |
---|
| 1420 | fi |
---|
| 1421 | (( i = i + 1 )) |
---|
| 1422 | done |
---|
| 1423 | fi |
---|
| 1424 | |
---|
| 1425 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1426 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
[759] | 1427 | [ -f ${2} ] && ls -l ${2} |
---|
| 1428 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[623] | 1429 | cat out_rsync |
---|
| 1430 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1431 | else |
---|
[759] | 1432 | |
---|
| 1433 | if [ X${JobType} = XRUN ] ; then |
---|
| 1434 | if [ X${3} = X ] ; then |
---|
| 1435 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1436 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1437 | fi |
---|
| 1438 | fi |
---|
| 1439 | |
---|
[623] | 1440 | \rm out_rsync |
---|
| 1441 | fi |
---|
| 1442 | else |
---|
| 1443 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1444 | fi |
---|
| 1445 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1446 | return 0 |
---|
| 1447 | } |
---|
| 1448 | |
---|
| 1449 | #D-#================================================== |
---|
[622] | 1450 | #D-function IGCM_sys_Get |
---|
| 1451 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1452 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1453 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1454 | function IGCM_sys_Get { |
---|
[623] | 1455 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[622] | 1456 | |
---|
[773] | 1457 | typeset DEST dm_liste target file_work |
---|
[667] | 1458 | typeset NB_ESSAI DELAI status i |
---|
[622] | 1459 | |
---|
[623] | 1460 | if ( $DEBUG_sys ) ; then |
---|
| 1461 | echo "IGCM_sys_Get :" $@ |
---|
| 1462 | fi |
---|
[667] | 1463 | |
---|
| 1464 | # number of tentative |
---|
[668] | 1465 | NB_ESSAI=3 |
---|
[667] | 1466 | # time delay between tentative |
---|
[668] | 1467 | DELAI=2 |
---|
[667] | 1468 | |
---|
[623] | 1469 | if [ $DRYRUN -le 2 ]; then |
---|
| 1470 | if [ X${1} = X'/l' ] ; then |
---|
| 1471 | # test if the first file is present in the old computation : |
---|
| 1472 | eval set +A dm_liste \${${2}} |
---|
| 1473 | else |
---|
| 1474 | eval set +A dm_liste ${1} |
---|
[622] | 1475 | fi |
---|
[623] | 1476 | eval DEST=\${${#}} |
---|
[622] | 1477 | |
---|
[623] | 1478 | #===================================================== |
---|
| 1479 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1480 | #===================================================== |
---|
[622] | 1481 | |
---|
[623] | 1482 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1483 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1484 | #if [ $? -eq 0 ] ; then |
---|
[785] | 1485 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1486 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1487 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1488 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1489 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1490 | # return |
---|
| 1491 | # fi |
---|
[623] | 1492 | #fi |
---|
[622] | 1493 | |
---|
[623] | 1494 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[715] | 1495 | status=$? |
---|
| 1496 | if [ ${status} -gt 0 ] ; then |
---|
| 1497 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[623] | 1498 | cat out_rsync |
---|
| 1499 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1500 | fi |
---|
[622] | 1501 | |
---|
[715] | 1502 | #if [ ${status} -gt 0 ] ; then |
---|
[785] | 1503 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1504 | # cat out_rsync |
---|
| 1505 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1506 | # sleep 30 |
---|
| 1507 | # echo "We try another time" |
---|
| 1508 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1509 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1510 | # status=$? |
---|
| 1511 | # if [ ${status} -gt 0 ] ; then |
---|
| 1512 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1513 | # cat out_rsync |
---|
| 1514 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[623] | 1515 | # fi |
---|
[785] | 1516 | # else |
---|
| 1517 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1518 | # cat out_rsync |
---|
| 1519 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1520 | # fi |
---|
[623] | 1521 | #fi |
---|
[622] | 1522 | |
---|
[719] | 1523 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1524 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1525 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1526 | |
---|
| 1527 | # #RSYNC WITH NFS USE |
---|
| 1528 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1529 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1530 | |
---|
| 1531 | # status=$? |
---|
| 1532 | # IGCM_sys_Rsync_out $status |
---|
| 1533 | |
---|
| 1534 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1535 | # (( status=status+$? )) |
---|
| 1536 | |
---|
[623] | 1537 | #USUAL WAY |
---|
| 1538 | if [ X${1} = X'/l' ] ; then |
---|
| 1539 | for target in ${dm_liste[*]} ; do |
---|
| 1540 | local_file=$( basename ${target} ) |
---|
[668] | 1541 | # test if the target file is present before the loop |
---|
| 1542 | IGCM_sys_TestFileArchive ${target} |
---|
[715] | 1543 | status=$? |
---|
| 1544 | if [ ${status} -gt 0 ] ; then |
---|
[701] | 1545 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[668] | 1546 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1547 | else |
---|
[719] | 1548 | i=0 |
---|
[668] | 1549 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1550 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1551 | status=$? |
---|
| 1552 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1553 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1554 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1555 | sleep $DELAI |
---|
[668] | 1556 | else |
---|
[676] | 1557 | break |
---|
[668] | 1558 | fi |
---|
| 1559 | (( i = i + 1 )) |
---|
| 1560 | done |
---|
[719] | 1561 | if [ ${status} -gt 0 ] ; then |
---|
| 1562 | echo "IGCM_sys_Get : error" |
---|
| 1563 | cat out_rsync |
---|
| 1564 | \rm out_rsync |
---|
| 1565 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1566 | else |
---|
| 1567 | \rm out_rsync |
---|
| 1568 | fi |
---|
[668] | 1569 | fi |
---|
[623] | 1570 | done |
---|
| 1571 | else |
---|
[719] | 1572 | i=0 |
---|
| 1573 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1574 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1575 | status=$? |
---|
| 1576 | if [ ${status} -gt 0 ]; then |
---|
| 1577 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1578 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1579 | sleep $DELAI |
---|
| 1580 | else |
---|
| 1581 | break |
---|
| 1582 | fi |
---|
| 1583 | (( i = i + 1 )) |
---|
| 1584 | done |
---|
| 1585 | if [ ${status} -gt 0 ] ; then |
---|
| 1586 | echo "IGCM_sys_Get : error" |
---|
| 1587 | cat out_rsync |
---|
| 1588 | \rm out_rsync |
---|
| 1589 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1590 | else |
---|
| 1591 | \rm out_rsync |
---|
| 1592 | fi |
---|
[623] | 1593 | fi |
---|
| 1594 | else |
---|
| 1595 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1596 | fi |
---|
| 1597 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1598 | } |
---|
[622] | 1599 | |
---|
[623] | 1600 | #D-#================================================== |
---|
| 1601 | #D-function IGCM_sys_GetBuffer |
---|
| 1602 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1603 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1604 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1605 | function IGCM_sys_GetBuffer { |
---|
| 1606 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1607 | |
---|
[773] | 1608 | typeset DEST buf_liste target file_work |
---|
[719] | 1609 | typeset NB_ESSAI DELAI status i |
---|
[623] | 1610 | |
---|
| 1611 | if ( $DEBUG_sys ) ; then |
---|
| 1612 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1613 | fi |
---|
[719] | 1614 | |
---|
| 1615 | # number of tentative |
---|
| 1616 | NB_ESSAI=3 |
---|
| 1617 | # time delay between tentative |
---|
| 1618 | DELAI=2 |
---|
| 1619 | |
---|
[623] | 1620 | if [ $DRYRUN -le 2 ]; then |
---|
| 1621 | if [ X${1} = X'/l' ] ; then |
---|
| 1622 | # test if the first file is present in the old computation : |
---|
| 1623 | eval set +A buf_liste \${${2}} |
---|
[622] | 1624 | else |
---|
[623] | 1625 | eval set +A buf_liste ${1} |
---|
[622] | 1626 | fi |
---|
[623] | 1627 | eval DEST=\${${#}} |
---|
| 1628 | |
---|
| 1629 | #USUAL WAY |
---|
| 1630 | if [ X${1} = X'/l' ] ; then |
---|
| 1631 | for target in ${buf_liste[*]} ; do |
---|
| 1632 | local_file=$( basename ${target} ) |
---|
[719] | 1633 | i=0 |
---|
| 1634 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1635 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1636 | status=$? |
---|
| 1637 | if [ ${status} -gt 0 ]; then |
---|
| 1638 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1639 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1640 | sleep $DELAI |
---|
| 1641 | else |
---|
| 1642 | break |
---|
| 1643 | fi |
---|
| 1644 | (( i = i + 1 )) |
---|
| 1645 | done |
---|
| 1646 | if [ ${status} -gt 0 ] ; then |
---|
| 1647 | echo "IGCM_sys_Get : error" |
---|
| 1648 | cat out_rsync |
---|
| 1649 | \rm out_rsync |
---|
| 1650 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1651 | else |
---|
| 1652 | \rm out_rsync |
---|
| 1653 | fi |
---|
[623] | 1654 | done |
---|
| 1655 | else |
---|
[719] | 1656 | i=0 |
---|
| 1657 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1658 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1659 | status=$? |
---|
| 1660 | if [ ${status} -gt 0 ]; then |
---|
| 1661 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1662 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1663 | sleep $DELAI |
---|
| 1664 | else |
---|
| 1665 | break |
---|
| 1666 | fi |
---|
| 1667 | (( i = i + 1 )) |
---|
| 1668 | done |
---|
| 1669 | if [ ${status} -gt 0 ] ; then |
---|
| 1670 | echo "IGCM_sys_Get : error" |
---|
| 1671 | cat out_rsync |
---|
| 1672 | \rm out_rsync |
---|
| 1673 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1674 | else |
---|
| 1675 | \rm out_rsync |
---|
| 1676 | fi |
---|
[623] | 1677 | fi |
---|
| 1678 | else |
---|
| 1679 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1680 | fi |
---|
| 1681 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
[622] | 1682 | } |
---|
| 1683 | |
---|
| 1684 | #D-#================================================== |
---|
| 1685 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1686 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1687 | #D-* Examples: |
---|
| 1688 | #D- |
---|
| 1689 | function IGCM_sys_GetDate_FichWork { |
---|
[623] | 1690 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1691 | if ( $DEBUG_sys ) ; then |
---|
| 1692 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1693 | fi |
---|
| 1694 | typeset dateF |
---|
| 1695 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1696 | eval ${2}=${dateF[5]} |
---|
| 1697 | |
---|
[773] | 1698 | # donne la date filesys d'un fichier sur la machine work |
---|
[623] | 1699 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[622] | 1700 | } |
---|
| 1701 | |
---|
| 1702 | #D-#================================================== |
---|
| 1703 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[623] | 1704 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[622] | 1705 | #D-* Examples: |
---|
| 1706 | #D- |
---|
| 1707 | function IGCM_sys_GetDate_FichArchive { |
---|
[623] | 1708 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1709 | if ( $DEBUG_sys ) ; then |
---|
| 1710 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1711 | fi |
---|
| 1712 | typeset dateF |
---|
| 1713 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1714 | eval ${2}=${dateF[5]} |
---|
| 1715 | |
---|
| 1716 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1717 | } |
---|
| 1718 | |
---|
| 1719 | #D-#================================================== |
---|
| 1720 | #D-function IGCM_sys_Dods_Rm |
---|
| 1721 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1722 | #D-* Examples: |
---|
| 1723 | #D- |
---|
| 1724 | function IGCM_sys_Dods_Rm { |
---|
| 1725 | if ( $DEBUG_sys ) ; then |
---|
| 1726 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1727 | fi |
---|
[715] | 1728 | typeset status |
---|
[623] | 1729 | if [ $DRYRUN = 0 ]; then |
---|
| 1730 | |
---|
| 1731 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1732 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1733 | # echo "Nothing has been done." |
---|
| 1734 | # return |
---|
| 1735 | # fi |
---|
| 1736 | |
---|
[649] | 1737 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[715] | 1738 | status=$? |
---|
[623] | 1739 | |
---|
[785] | 1740 | # if [ ${status} -gt 0 ] ; then |
---|
| 1741 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1742 | # cat out_dods_rm |
---|
| 1743 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
| 1744 | # else |
---|
| 1745 | # rm out_dods_rm |
---|
| 1746 | # fi |
---|
[623] | 1747 | |
---|
| 1748 | else |
---|
| 1749 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1750 | fi |
---|
[715] | 1751 | return $status |
---|
[623] | 1752 | } |
---|
| 1753 | |
---|
| 1754 | #D-#================================================== |
---|
| 1755 | #D-function IGCM_sys_Dods_Cp |
---|
| 1756 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1757 | #D-* Examples: |
---|
| 1758 | #D- |
---|
| 1759 | function IGCM_sys_Dods_Cp { |
---|
| 1760 | if ( $DEBUG_sys ) ; then |
---|
| 1761 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1762 | fi |
---|
[715] | 1763 | typeset status |
---|
[623] | 1764 | if [ $DRYRUN = 0 ]; then |
---|
| 1765 | |
---|
| 1766 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1767 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1768 | # echo "Nothing has been done." |
---|
| 1769 | # return |
---|
| 1770 | # fi |
---|
| 1771 | |
---|
[649] | 1772 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[715] | 1773 | status=$? |
---|
[623] | 1774 | |
---|
[715] | 1775 | # if [ ${status} -gt 0 ] ; then |
---|
[623] | 1776 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1777 | # cat out_dods_cp |
---|
| 1778 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1779 | # else |
---|
| 1780 | # rm out_dods_cp |
---|
| 1781 | # fi |
---|
| 1782 | |
---|
| 1783 | else |
---|
| 1784 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1785 | fi |
---|
[715] | 1786 | return $status |
---|
[623] | 1787 | } |
---|
| 1788 | |
---|
| 1789 | #D-#================================================== |
---|
| 1790 | #D-function IGCM_sys_Put_Dods |
---|
| 1791 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1792 | #D-* Examples: |
---|
| 1793 | #D- |
---|
| 1794 | function IGCM_sys_Put_Dods { |
---|
| 1795 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1796 | if ( $DEBUG_sys ) ; then |
---|
| 1797 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1798 | fi |
---|
[711] | 1799 | #set -vx |
---|
[715] | 1800 | typeset status |
---|
[623] | 1801 | if [ $DRYRUN = 0 ]; then |
---|
| 1802 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1803 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1804 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1805 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
| 1806 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1807 | return |
---|
[622] | 1808 | fi |
---|
[623] | 1809 | |
---|
| 1810 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1811 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1812 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1813 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1814 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1815 | return |
---|
| 1816 | fi |
---|
| 1817 | # |
---|
| 1818 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1819 | cd ${R_SAVE} |
---|
| 1820 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1821 | cd ${R_FIGR} |
---|
| 1822 | fi |
---|
| 1823 | |
---|
| 1824 | IGCM_sys_Dods_Rm ${1} |
---|
| 1825 | IGCM_sys_Dods_Cp ${1} |
---|
[715] | 1826 | status=0 |
---|
[623] | 1827 | |
---|
[715] | 1828 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1829 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1830 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1831 | fi |
---|
| 1832 | else |
---|
| 1833 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1834 | fi |
---|
| 1835 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[622] | 1836 | } |
---|
| 1837 | |
---|
| 1838 | ############################################################## |
---|
| 1839 | # REBUILD OPERATOR |
---|
| 1840 | |
---|
| 1841 | function IGCM_sys_rebuild { |
---|
[623] | 1842 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1843 | if ( $DEBUG_sys ) ; then |
---|
| 1844 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1845 | fi |
---|
[716] | 1846 | |
---|
[734] | 1847 | typeset NB_ESSAI DELAI status i firstArg |
---|
[716] | 1848 | # number of tentative |
---|
| 1849 | NB_ESSAI=3 |
---|
| 1850 | # time delay between tentative |
---|
| 1851 | DELAI=2 |
---|
| 1852 | |
---|
| 1853 | i=0 |
---|
| 1854 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1855 | ~p86ipsl/CESIUM/bin/rebuild -f -o $@ > out_rsync 2>&1 |
---|
| 1856 | status=$? |
---|
| 1857 | if [ ${status} -gt 0 ] ; then |
---|
| 1858 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1859 | cat out_rsync |
---|
| 1860 | \rm out_rsync |
---|
| 1861 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1862 | firstArg=${1} |
---|
| 1863 | \rm ${firstArg} |
---|
[733] | 1864 | sleep $DELAI |
---|
[716] | 1865 | else |
---|
| 1866 | \rm out_rsync |
---|
| 1867 | break |
---|
| 1868 | fi |
---|
| 1869 | (( i = i + 1 )) |
---|
| 1870 | done |
---|
| 1871 | |
---|
[725] | 1872 | if [ ${status} -gt 0 ] ; then |
---|
[773] | 1873 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
[623] | 1874 | IGCM_debug_Exit "rebuild" |
---|
| 1875 | fi |
---|
[622] | 1876 | |
---|
[623] | 1877 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[622] | 1878 | } |
---|
| 1879 | |
---|
[697] | 1880 | function IGCM_sys_rebuild_station { |
---|
| 1881 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1882 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1883 | if ( $DEBUG_sys ) ; then |
---|
| 1884 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1885 | fi |
---|
| 1886 | list_opt=$@ |
---|
| 1887 | |
---|
[773] | 1888 | # Invert Axis : t,x -> x,t |
---|
[697] | 1889 | # t,pres,x -> x,t,pres |
---|
| 1890 | # So that we can concatenate along x |
---|
| 1891 | i=0 |
---|
| 1892 | for file_in in ${list_opt} ; do |
---|
| 1893 | (( i = i + 1)) |
---|
| 1894 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1895 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1896 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1897 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1898 | done |
---|
| 1899 | |
---|
| 1900 | # Concatenate |
---|
| 1901 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1902 | |
---|
| 1903 | # Re-ivert file |
---|
| 1904 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1905 | |
---|
| 1906 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1907 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1908 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1909 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1910 | # BEGIN reordering |
---|
| 1911 | |
---|
| 1912 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1913 | # We isolate this in the code below: |
---|
| 1914 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1915 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1916 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1917 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1918 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1919 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1920 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1921 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1922 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1923 | # typeset -Z4 j4 |
---|
| 1924 | # typeset -Z3 j3 |
---|
| 1925 | |
---|
| 1926 | # unset list_opt |
---|
| 1927 | # set +A list_opt $@ |
---|
| 1928 | |
---|
| 1929 | # Filename after rebuild |
---|
| 1930 | # file_out=${list_opt[0]} |
---|
| 1931 | # Prefix of output files |
---|
| 1932 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1933 | # Number of procs |
---|
| 1934 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1935 | |
---|
| 1936 | # iProc=0 |
---|
| 1937 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1938 | # Array containing Station as a number |
---|
| 1939 | # unset proc_stn |
---|
| 1940 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1941 | # Number of stations produced by processor proc |
---|
| 1942 | # stationLast=${#proc_stn[*]} |
---|
| 1943 | # Proc number on 4 digits |
---|
| 1944 | # j4=${iProc} |
---|
| 1945 | # Init |
---|
| 1946 | # iStation=0 |
---|
| 1947 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1948 | # Station number on 3 digits |
---|
| 1949 | # j3=${proc_stn[${iStation}]} |
---|
| 1950 | # Extract station |
---|
[773] | 1951 | # Invert Axis : t,x -> x,t |
---|
[697] | 1952 | # t,pres,x -> x,t,pres |
---|
| 1953 | # So that we can concatenate along x |
---|
| 1954 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1955 | # (( iStation = iStation + 1 )) |
---|
| 1956 | # done |
---|
| 1957 | # (( iProc = iProc + 1 )) |
---|
| 1958 | # done |
---|
| 1959 | |
---|
| 1960 | # Concatenate all station along x |
---|
| 1961 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1962 | |
---|
| 1963 | # Re-invert file |
---|
| 1964 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1965 | |
---|
| 1966 | # END reordering |
---|
| 1967 | |
---|
| 1968 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1969 | } |
---|
| 1970 | |
---|
[622] | 1971 | ############################################################ |
---|
| 1972 | # Activate Running Environnment Variables |
---|
| 1973 | |
---|
| 1974 | function IGCM_sys_activ_variables { |
---|
[623] | 1975 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1976 | if ( $DEBUG_sys ) ; then |
---|
| 1977 | echo "IGCM_sys_activ_variables" |
---|
| 1978 | fi |
---|
[622] | 1979 | |
---|
[623] | 1980 | ulimit -s unlimited |
---|
[622] | 1981 | |
---|
[623] | 1982 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[622] | 1983 | } |
---|
| 1984 | |
---|
| 1985 | ############################################################ |
---|
| 1986 | # Desactivate Running Environnment Variables |
---|
| 1987 | |
---|
| 1988 | function IGCM_sys_desactiv_variables { |
---|
[623] | 1989 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1990 | if ( $DEBUG_sys ) ; then |
---|
| 1991 | echo "IGCM_sys_desactiv_variables" |
---|
| 1992 | fi |
---|
| 1993 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[622] | 1994 | } |
---|
| 1995 | |
---|
[623] | 1996 | ############################################################ |
---|
| 1997 | # Build MPI/OMP scripts run file (dummy function) |
---|
[622] | 1998 | |
---|
| 1999 | function IGCM_sys_build_run_file { |
---|
| 2000 | |
---|
[623] | 2001 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[622] | 2002 | |
---|
| 2003 | } |
---|
| 2004 | |
---|
| 2005 | ############################################################ |
---|
| 2006 | # Build MPI/OMP scripts |
---|
[623] | 2007 | function IGCM_sys_build_execution_scripts |
---|
[622] | 2008 | { |
---|
[623] | 2009 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 2010 | if ( $DEBUG_sys ) ; then |
---|
| 2011 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 2012 | fi |
---|
[622] | 2013 | |
---|
| 2014 | # Verification with MSUB parameter |
---|
[623] | 2015 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
[622] | 2016 | |
---|
[623] | 2017 | if ( ${OK_PARA_MPMD} ) ; then |
---|
[622] | 2018 | |
---|
[623] | 2019 | if [ -f run_file ] ; then |
---|
| 2020 | IGCM_sys_Rm -f run_file |
---|
| 2021 | fi |
---|
| 2022 | touch run_file |
---|
[622] | 2023 | |
---|
| 2024 | # run_file construction |
---|
| 2025 | |
---|
| 2026 | # Then first loop on the components for the coupler ie oasis |
---|
| 2027 | |
---|
| 2028 | ### the coupler ie oasis must be the first one |
---|
| 2029 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2030 | |
---|
[623] | 2031 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2032 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 2033 | |
---|
[773] | 2034 | # for CPL component only |
---|
[623] | 2035 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[622] | 2036 | |
---|
[623] | 2037 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2038 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2039 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 2040 | fi |
---|
[622] | 2041 | done |
---|
| 2042 | |
---|
| 2043 | # Then second loop on the components |
---|
| 2044 | |
---|
| 2045 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2046 | |
---|
[623] | 2047 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2048 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 2049 | |
---|
[773] | 2050 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
[623] | 2051 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
[622] | 2052 | |
---|
[623] | 2053 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2054 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2055 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 2056 | fi |
---|
[622] | 2057 | done |
---|
| 2058 | |
---|
| 2059 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
| 2060 | |
---|
| 2061 | IGCM_sys_Chmod u+x run_file |
---|
| 2062 | if ( $DEBUG_sys ) ; then |
---|
| 2063 | echo "run_file contains : " |
---|
| 2064 | cat run_file |
---|
| 2065 | fi |
---|
| 2066 | |
---|
[623] | 2067 | else # Only one executable. launch it. |
---|
[622] | 2068 | |
---|
[623] | 2069 | # |
---|
[622] | 2070 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2071 | |
---|
[685] | 2072 | # Only if we really have an executable for the component : |
---|
[623] | 2073 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[685] | 2074 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[622] | 2075 | |
---|
[685] | 2076 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 2077 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2078 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 2079 | |
---|
| 2080 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 2081 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2082 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2083 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 2084 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 2085 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 2086 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 2087 | fi |
---|
| 2088 | |
---|
| 2089 | if ( ${OK_PARA_MPI} ) ; then |
---|
[623] | 2090 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
[685] | 2091 | # Default : ccc_mprun used if nb_proc gt 1 |
---|
| 2092 | # to have out/err per process on different files |
---|
| 2093 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}" >> script_${ExeNameOut}.ksh |
---|
| 2094 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2095 | EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
[623] | 2096 | else |
---|
[685] | 2097 | # Default : ccc_mprun is NOT used if nb_proc eq 1 |
---|
| 2098 | # to have out/err per process on different files |
---|
| 2099 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 2100 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2101 | EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh" |
---|
[622] | 2102 | fi |
---|
[685] | 2103 | |
---|
| 2104 | IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains" |
---|
| 2105 | cat script_${ExeNameOut}.ksh |
---|
| 2106 | |
---|
[623] | 2107 | fi |
---|
[622] | 2108 | |
---|
| 2109 | done |
---|
| 2110 | |
---|
[623] | 2111 | fi |
---|
[622] | 2112 | |
---|
[623] | 2113 | IGCM_debug_Print 1 "sys Curie : execution command is " |
---|
| 2114 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[622] | 2115 | |
---|
[623] | 2116 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[622] | 2117 | } |
---|
| 2118 | |
---|
[714] | 2119 | ############################################################ |
---|
| 2120 | # Check of space available on temporary filesytems |
---|
| 2121 | function IGCM_sys_check_quota { |
---|
[776] | 2122 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 2123 | if ( $DEBUG_sys ) ; then |
---|
| 2124 | echo "IGCM_sys_check_quota" |
---|
| 2125 | fi |
---|
| 2126 | # Limit of quota (in %) |
---|
| 2127 | limit_quota=90 |
---|
| 2128 | |
---|
| 2129 | # Check of the volume |
---|
| 2130 | volume_quota=$(ccc_quota | grep ' scratch' | awk '{print $2}') |
---|
| 2131 | volume_avail=$(ccc_quota | grep ' scratch' | awk '{print $3}') |
---|
| 2132 | |
---|
| 2133 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
| 2134 | |
---|
| 2135 | unit_avail=${volume_avail: -1} |
---|
| 2136 | unit_quota=${volume_quota: -1} |
---|
| 2137 | |
---|
| 2138 | if [ "${unit_quota}" = "*" ] ; then |
---|
| 2139 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2140 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2141 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2142 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2143 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2144 | IGCM_debug_Verif_Exit |
---|
[714] | 2145 | fi |
---|
[776] | 2146 | |
---|
| 2147 | temp_avail=${volume_avail%%${volume_avail: -1}*} |
---|
| 2148 | temp_quota=${volume_quota%%${volume_quota: -1}*} |
---|
| 2149 | |
---|
| 2150 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2151 | |
---|
| 2152 | # Convertion |
---|
| 2153 | if [ ${volume_avail: -1} = "T" ] ; then |
---|
| 2154 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2155 | elif [ ${volume_avail: -1} = "G" ] ; then |
---|
| 2156 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2157 | elif [ ${volume_avail: -1} = "M" ] ; then |
---|
| 2158 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2159 | elif [ ${volume_avail: -1} = "k" ] ; then |
---|
| 2160 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2161 | else |
---|
| 2162 | (( temp_avail = volume_avail )) |
---|
| 2163 | fi |
---|
| 2164 | if [ ${volume_quota: -1} = "T" ] ; then |
---|
| 2165 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2166 | elif [ ${volume_quota: -1} = "G" ] ; then |
---|
| 2167 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2168 | elif [ ${volume_quota: -1} = "M" ] ; then |
---|
| 2169 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2170 | elif [ ${volume_quota: -1} = "k" ] ; then |
---|
| 2171 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2172 | else |
---|
| 2173 | (( temp_quota = volume_quota )) |
---|
| 2174 | fi |
---|
| 2175 | fi |
---|
| 2176 | |
---|
| 2177 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2178 | # echo "volume ratio is " $quota_volume |
---|
| 2179 | |
---|
| 2180 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
| 2181 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2182 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 2183 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2184 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2185 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2186 | IGCM_debug_Verif_Exit |
---|
| 2187 | fi |
---|
| 2188 | |
---|
| 2189 | fi |
---|
| 2190 | |
---|
| 2191 | # Check of the number of inodes |
---|
| 2192 | |
---|
| 2193 | inode_quota=$(ccc_quota | grep ' scratch' | awk '{print $6}') |
---|
| 2194 | inode_avail=$(ccc_quota | grep ' scratch' | awk '{print $7}') |
---|
| 2195 | |
---|
| 2196 | if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then |
---|
| 2197 | |
---|
| 2198 | unit_avail=${inode_avail: -1} |
---|
| 2199 | unit_quota=${inode_quota: -1} |
---|
| 2200 | |
---|
| 2201 | if [ "${unit_quota}" = "*" ] ; then |
---|
| 2202 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2203 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2204 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2205 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2206 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2207 | IGCM_debug_Verif_Exit |
---|
| 2208 | fi |
---|
| 2209 | |
---|
| 2210 | temp_avail=${inode_avail%%${inode_avail: -1}*} |
---|
| 2211 | temp_quota=${inode_quota%%${inode_quota: -1}*} |
---|
| 2212 | |
---|
| 2213 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2214 | |
---|
| 2215 | # Convertion |
---|
| 2216 | if [ ${inode_avail: -1} = "T" ] ; then |
---|
| 2217 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2218 | elif [ ${inode_avail: -1} = "G" ] ; then |
---|
| 2219 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2220 | elif [ ${inode_avail: -1} = "M" ] ; then |
---|
| 2221 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2222 | elif [ ${inode_avail: -1} = "k" ] ; then |
---|
| 2223 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2224 | else |
---|
| 2225 | (( temp_avail = inode_avail )) |
---|
| 2226 | fi |
---|
| 2227 | |
---|
| 2228 | if [ ${inode_quota: -1} = "T" ] ; then |
---|
| 2229 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2230 | elif [ ${inode_quota: -1} = "G" ] ; then |
---|
| 2231 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2232 | elif [ ${inode_quota: -1} = "M" ] ; then |
---|
| 2233 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2234 | elif [ ${inode_quota: -1} = "k" ] ; then |
---|
| 2235 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2236 | else |
---|
| 2237 | (( temp_quota = inode_quota )) |
---|
| 2238 | fi |
---|
| 2239 | fi |
---|
| 2240 | quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2241 | # echo "inode ratio is " $quota_inode |
---|
| 2242 | |
---|
| 2243 | if [ ${quota_inode} -ge ${limit_quota} ] ; then |
---|
| 2244 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2245 | IGCM_debug_Print 1 "${quota_inode}% of your quota is used" |
---|
| 2246 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2247 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2248 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2249 | IGCM_debug_Verif_Exit |
---|
| 2250 | fi |
---|
| 2251 | fi |
---|
| 2252 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
[714] | 2253 | } |
---|
| 2254 | |
---|
[773] | 2255 | #D-#================================================== |
---|
| 2256 | #D-function IGCM_sys_CountJobInQueue |
---|
| 2257 | #D-* Purpose: Check if job_name is currently |
---|
| 2258 | #D- running or in queue |
---|
| 2259 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 2260 | #D- |
---|
| 2261 | |
---|
| 2262 | function IGCM_sys_CountJobInQueue { |
---|
| 2263 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 2264 | if ( $DEBUG_sys ) ; then |
---|
| 2265 | echo "IGCM_sys_CountJobInQueue" |
---|
| 2266 | fi |
---|
| 2267 | |
---|
| 2268 | #NbRun=$( ccc_mstat -f | grep -c ${JobName} ) |
---|
| 2269 | |
---|
| 2270 | # With -f option, the full job name is given in the last column |
---|
| 2271 | NbRun=$( ccc_mstat -f | gawk -v JobName=$1 'BEGIN { x=0 } ($NF~String) { x=x+1 } END { print x }' ) |
---|
| 2272 | |
---|
| 2273 | eval ${2}=${NbRun} |
---|
| 2274 | |
---|
| 2275 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 2276 | } |
---|
| 2277 | |
---|
[622] | 2278 | ############################################################## |
---|
| 2279 | # NCO OPERATOR |
---|
| 2280 | |
---|
[623] | 2281 | function IGCM_sys_ncap2 { |
---|
| 2282 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 2283 | if ( $DEBUG_sys ) ; then |
---|
| 2284 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 2285 | fi |
---|
[713] | 2286 | |
---|
| 2287 | typeset NB_ESSAI DELAI status i |
---|
| 2288 | # number of tentative |
---|
| 2289 | NB_ESSAI=3 |
---|
| 2290 | # time delay between tentative |
---|
| 2291 | DELAI=2 |
---|
| 2292 | |
---|
| 2293 | i=0 |
---|
| 2294 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2295 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 2296 | status=$? |
---|
| 2297 | if [ ${status} -gt 0 ] ; then |
---|
| 2298 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 2299 | cat out_rsync |
---|
| 2300 | \rm out_rsync |
---|
| 2301 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2302 | sleep $DELAI |
---|
[713] | 2303 | else |
---|
| 2304 | \rm out_rsync |
---|
| 2305 | break |
---|
| 2306 | fi |
---|
| 2307 | (( i = i + 1 )) |
---|
| 2308 | done |
---|
| 2309 | |
---|
| 2310 | if [ ${status} -gt 0 ] ; then |
---|
| 2311 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 2312 | IGCM_debug_Exit "ncap2" |
---|
[623] | 2313 | fi |
---|
| 2314 | |
---|
| 2315 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 2316 | } |
---|
| 2317 | |
---|
[622] | 2318 | function IGCM_sys_ncatted { |
---|
[623] | 2319 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 2320 | if ( $DEBUG_sys ) ; then |
---|
| 2321 | echo "IGCM_sys_ncatted :" $@ |
---|
| 2322 | fi |
---|
[713] | 2323 | |
---|
| 2324 | typeset NB_ESSAI DELAI status i |
---|
| 2325 | # number of tentative |
---|
| 2326 | NB_ESSAI=3 |
---|
| 2327 | # time delay between tentative |
---|
| 2328 | DELAI=2 |
---|
| 2329 | |
---|
| 2330 | i=0 |
---|
| 2331 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2332 | ncatted "$@" > out_rsync 2>&1 |
---|
| 2333 | status=$? |
---|
| 2334 | if [ ${status} -gt 0 ] ; then |
---|
| 2335 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 2336 | cat out_rsync |
---|
| 2337 | \rm out_rsync |
---|
| 2338 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2339 | sleep $DELAI |
---|
[713] | 2340 | else |
---|
| 2341 | \rm out_rsync |
---|
| 2342 | break |
---|
| 2343 | fi |
---|
| 2344 | (( i = i + 1 )) |
---|
| 2345 | done |
---|
| 2346 | |
---|
| 2347 | if [ ${status} -gt 0 ] ; then |
---|
| 2348 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 2349 | IGCM_debug_Exit "ncatted" |
---|
[623] | 2350 | fi |
---|
[622] | 2351 | |
---|
[623] | 2352 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[622] | 2353 | } |
---|
| 2354 | |
---|
| 2355 | function IGCM_sys_ncbo { |
---|
[623] | 2356 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 2357 | if ( $DEBUG_sys ) ; then |
---|
| 2358 | echo "IGCM_sys_ncbo :" $@ |
---|
| 2359 | fi |
---|
[713] | 2360 | |
---|
| 2361 | typeset NB_ESSAI DELAI status i |
---|
| 2362 | # number of tentative |
---|
| 2363 | NB_ESSAI=3 |
---|
| 2364 | # time delay between tentative |
---|
| 2365 | DELAI=2 |
---|
| 2366 | |
---|
| 2367 | i=0 |
---|
| 2368 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2369 | ncbo $@ > out_rsync 2>&1 |
---|
| 2370 | status=$? |
---|
| 2371 | if [ ${status} -gt 0 ] ; then |
---|
| 2372 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 2373 | cat out_rsync |
---|
| 2374 | \rm out_rsync |
---|
| 2375 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2376 | sleep $DELAI |
---|
[713] | 2377 | else |
---|
| 2378 | \rm out_rsync |
---|
| 2379 | break |
---|
| 2380 | fi |
---|
| 2381 | (( i = i + 1 )) |
---|
| 2382 | done |
---|
| 2383 | |
---|
| 2384 | if [ ${status} -gt 0 ] ; then |
---|
| 2385 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 2386 | IGCM_debug_Exit "ncbo" |
---|
[623] | 2387 | fi |
---|
[622] | 2388 | |
---|
[623] | 2389 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[622] | 2390 | } |
---|
| 2391 | |
---|
| 2392 | function IGCM_sys_ncdiff { |
---|
[623] | 2393 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 2394 | if ( $DEBUG_sys ) ; then |
---|
| 2395 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 2396 | fi |
---|
[713] | 2397 | |
---|
| 2398 | typeset NB_ESSAI DELAI status i |
---|
| 2399 | # number of tentative |
---|
| 2400 | NB_ESSAI=3 |
---|
| 2401 | # time delay between tentative |
---|
| 2402 | DELAI=2 |
---|
| 2403 | |
---|
| 2404 | i=0 |
---|
| 2405 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2406 | ncdiff $@ > out_rsync 2>&1 |
---|
| 2407 | status=$? |
---|
| 2408 | if [ ${status} -gt 0 ] ; then |
---|
| 2409 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 2410 | cat out_rsync |
---|
| 2411 | \rm out_rsync |
---|
| 2412 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2413 | sleep $DELAI |
---|
[713] | 2414 | else |
---|
| 2415 | \rm out_rsync |
---|
| 2416 | break |
---|
| 2417 | fi |
---|
| 2418 | (( i = i + 1 )) |
---|
| 2419 | done |
---|
| 2420 | |
---|
| 2421 | if [ ${status} -gt 0 ] ; then |
---|
| 2422 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 2423 | IGCM_debug_Exit "ncdiff" |
---|
[623] | 2424 | fi |
---|
[622] | 2425 | |
---|
[623] | 2426 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[622] | 2427 | } |
---|
| 2428 | |
---|
| 2429 | function IGCM_sys_ncea { |
---|
[623] | 2430 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 2431 | if ( $DEBUG_sys ) ; then |
---|
| 2432 | echo "IGCM_sys_ncea :" $@ |
---|
| 2433 | fi |
---|
[713] | 2434 | |
---|
| 2435 | typeset NB_ESSAI DELAI status i |
---|
| 2436 | # number of tentative |
---|
| 2437 | NB_ESSAI=3 |
---|
| 2438 | # time delay between tentative |
---|
| 2439 | DELAI=2 |
---|
| 2440 | |
---|
| 2441 | i=0 |
---|
| 2442 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2443 | ncea $@ > out_rsync 2>&1 |
---|
| 2444 | status=$? |
---|
| 2445 | if [ ${status} -gt 0 ] ; then |
---|
| 2446 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 2447 | cat out_rsync |
---|
| 2448 | \rm out_rsync |
---|
| 2449 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2450 | sleep $DELAI |
---|
[713] | 2451 | else |
---|
| 2452 | \rm out_rsync |
---|
| 2453 | break |
---|
| 2454 | fi |
---|
| 2455 | (( i = i + 1 )) |
---|
| 2456 | done |
---|
| 2457 | |
---|
| 2458 | if [ ${status} -gt 0 ] ; then |
---|
| 2459 | echo "IGCM_sys_ncea : ncea error" |
---|
| 2460 | IGCM_debug_Exit "ncea" |
---|
[623] | 2461 | fi |
---|
[622] | 2462 | |
---|
[623] | 2463 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[622] | 2464 | } |
---|
| 2465 | |
---|
| 2466 | function IGCM_sys_ncecat { |
---|
[623] | 2467 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 2468 | if ( $DEBUG_sys ) ; then |
---|
| 2469 | echo "IGCM_sys_ncecat :" $@ |
---|
| 2470 | fi |
---|
[713] | 2471 | |
---|
| 2472 | typeset NB_ESSAI DELAI status i |
---|
| 2473 | # number of tentative |
---|
| 2474 | NB_ESSAI=3 |
---|
| 2475 | # time delay between tentative |
---|
| 2476 | DELAI=2 |
---|
| 2477 | |
---|
| 2478 | i=0 |
---|
| 2479 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2480 | ncecat $@ > out_rsync 2>&1 |
---|
| 2481 | status=$? |
---|
| 2482 | if [ ${status} -gt 0 ] ; then |
---|
| 2483 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 2484 | cat out_rsync |
---|
| 2485 | \rm out_rsync |
---|
| 2486 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2487 | sleep $DELAI |
---|
[713] | 2488 | else |
---|
| 2489 | \rm out_rsync |
---|
| 2490 | break |
---|
| 2491 | fi |
---|
| 2492 | (( i = i + 1 )) |
---|
| 2493 | done |
---|
| 2494 | |
---|
| 2495 | if [ ${status} -gt 0 ] ; then |
---|
| 2496 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 2497 | IGCM_debug_Exit "ncecat" |
---|
[623] | 2498 | fi |
---|
[622] | 2499 | |
---|
[623] | 2500 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[622] | 2501 | } |
---|
| 2502 | |
---|
| 2503 | function IGCM_sys_ncflint { |
---|
[623] | 2504 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 2505 | if ( $DEBUG_sys ) ; then |
---|
| 2506 | echo "IGCM_sys_ncflint :" $@ |
---|
| 2507 | fi |
---|
[713] | 2508 | |
---|
| 2509 | typeset NB_ESSAI DELAI status i |
---|
| 2510 | # number of tentative |
---|
| 2511 | NB_ESSAI=3 |
---|
| 2512 | # time delay between tentative |
---|
| 2513 | DELAI=2 |
---|
| 2514 | |
---|
| 2515 | i=0 |
---|
| 2516 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2517 | ncflint $@ > out_rsync 2>&1 |
---|
| 2518 | status=$? |
---|
| 2519 | if [ ${status} -gt 0 ] ; then |
---|
| 2520 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 2521 | cat out_rsync |
---|
| 2522 | \rm out_rsync |
---|
| 2523 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2524 | sleep $DELAI |
---|
[713] | 2525 | else |
---|
| 2526 | \rm out_rsync |
---|
| 2527 | break |
---|
| 2528 | fi |
---|
| 2529 | (( i = i + 1 )) |
---|
| 2530 | done |
---|
| 2531 | |
---|
| 2532 | if [ ${status} -gt 0 ] ; then |
---|
| 2533 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2534 | IGCM_debug_Exit "ncflint" |
---|
[623] | 2535 | fi |
---|
[622] | 2536 | |
---|
[623] | 2537 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[622] | 2538 | } |
---|
| 2539 | |
---|
| 2540 | function IGCM_sys_ncks { |
---|
[623] | 2541 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2542 | if ( $DEBUG_sys ) ; then |
---|
| 2543 | echo "IGCM_sys_ncks :" $@ |
---|
| 2544 | fi |
---|
[713] | 2545 | |
---|
| 2546 | typeset NB_ESSAI DELAI status i |
---|
| 2547 | # number of tentative |
---|
| 2548 | NB_ESSAI=3 |
---|
| 2549 | # time delay between tentative |
---|
| 2550 | DELAI=2 |
---|
| 2551 | |
---|
| 2552 | i=0 |
---|
| 2553 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2554 | ncks $@ > out_rsync 2>&1 |
---|
| 2555 | status=$? |
---|
| 2556 | if [ ${status} -gt 0 ] ; then |
---|
| 2557 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2558 | cat out_rsync |
---|
| 2559 | \rm out_rsync |
---|
| 2560 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2561 | sleep $DELAI |
---|
[713] | 2562 | else |
---|
| 2563 | \rm out_rsync |
---|
| 2564 | break |
---|
| 2565 | fi |
---|
| 2566 | (( i = i + 1 )) |
---|
| 2567 | done |
---|
| 2568 | |
---|
| 2569 | if [ ${status} -gt 0 ] ; then |
---|
| 2570 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2571 | IGCM_debug_Exit "ncks" |
---|
[623] | 2572 | fi |
---|
[622] | 2573 | |
---|
[623] | 2574 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[622] | 2575 | } |
---|
| 2576 | |
---|
| 2577 | function IGCM_sys_ncpdq { |
---|
[623] | 2578 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2579 | if ( $DEBUG_sys ) ; then |
---|
| 2580 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2581 | fi |
---|
[713] | 2582 | |
---|
| 2583 | typeset NB_ESSAI DELAI status i |
---|
| 2584 | # number of tentative |
---|
| 2585 | NB_ESSAI=3 |
---|
| 2586 | # time delay between tentative |
---|
| 2587 | DELAI=2 |
---|
| 2588 | |
---|
| 2589 | i=0 |
---|
| 2590 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2591 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2592 | status=$? |
---|
| 2593 | if [ ${status} -gt 0 ] ; then |
---|
| 2594 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2595 | cat out_rsync |
---|
| 2596 | \rm out_rsync |
---|
| 2597 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2598 | sleep $DELAI |
---|
[713] | 2599 | else |
---|
| 2600 | \rm out_rsync |
---|
| 2601 | break |
---|
| 2602 | fi |
---|
| 2603 | (( i = i + 1 )) |
---|
| 2604 | done |
---|
| 2605 | |
---|
| 2606 | if [ ${status} -gt 0 ] ; then |
---|
| 2607 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2608 | IGCM_debug_Exit "ncpdq" |
---|
[623] | 2609 | fi |
---|
[622] | 2610 | |
---|
[623] | 2611 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[622] | 2612 | } |
---|
| 2613 | |
---|
| 2614 | function IGCM_sys_ncra { |
---|
[623] | 2615 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2616 | if ( $DEBUG_sys ) ; then |
---|
| 2617 | echo "IGCM_sys_ncra :" $@ |
---|
| 2618 | fi |
---|
[713] | 2619 | |
---|
| 2620 | typeset NB_ESSAI DELAI status i |
---|
| 2621 | # number of tentative |
---|
| 2622 | NB_ESSAI=3 |
---|
| 2623 | # time delay between tentative |
---|
| 2624 | DELAI=2 |
---|
| 2625 | |
---|
| 2626 | i=0 |
---|
| 2627 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2628 | ncra $@ > out_rsync 2>&1 |
---|
| 2629 | status=$? |
---|
| 2630 | if [ ${status} -gt 0 ] ; then |
---|
| 2631 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2632 | cat out_rsync |
---|
| 2633 | \rm out_rsync |
---|
| 2634 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2635 | sleep $DELAI |
---|
[713] | 2636 | else |
---|
| 2637 | \rm out_rsync |
---|
| 2638 | break |
---|
| 2639 | fi |
---|
| 2640 | (( i = i + 1 )) |
---|
| 2641 | done |
---|
| 2642 | |
---|
| 2643 | if [ ${status} -gt 0 ] ; then |
---|
| 2644 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2645 | IGCM_debug_Exit "ncra" |
---|
[623] | 2646 | fi |
---|
[622] | 2647 | |
---|
[623] | 2648 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[622] | 2649 | } |
---|
| 2650 | |
---|
| 2651 | function IGCM_sys_ncrcat { |
---|
[623] | 2652 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2653 | if ( $DEBUG_sys ) ; then |
---|
| 2654 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2655 | fi |
---|
[713] | 2656 | |
---|
[725] | 2657 | typeset NB_ESSAI DELAI status i lastArg |
---|
[713] | 2658 | # number of tentative |
---|
| 2659 | NB_ESSAI=3 |
---|
| 2660 | # time delay between tentative |
---|
| 2661 | DELAI=2 |
---|
| 2662 | |
---|
| 2663 | i=0 |
---|
| 2664 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2665 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2666 | status=$? |
---|
| 2667 | if [ ${status} -gt 0 ] ; then |
---|
| 2668 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2669 | cat out_rsync |
---|
| 2670 | \rm out_rsync |
---|
| 2671 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2672 | sleep $DELAI |
---|
[721] | 2673 | elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then |
---|
| 2674 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
| 2675 | cat out_rsync |
---|
[725] | 2676 | # remove files having corrupted time axis |
---|
[734] | 2677 | eval lastArg=\${$#} |
---|
[725] | 2678 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
| 2679 | \rm ${lastArg} |
---|
[721] | 2680 | \rm out_rsync |
---|
| 2681 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2682 | sleep $DELAI |
---|
[713] | 2683 | else |
---|
| 2684 | \rm out_rsync |
---|
| 2685 | break |
---|
| 2686 | fi |
---|
| 2687 | (( i = i + 1 )) |
---|
| 2688 | done |
---|
| 2689 | |
---|
| 2690 | if [ ${status} -gt 0 ] ; then |
---|
| 2691 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2692 | #IGCM_debug_Exit "ncrcat" |
---|
[623] | 2693 | fi |
---|
[622] | 2694 | |
---|
[623] | 2695 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[622] | 2696 | } |
---|
| 2697 | |
---|
| 2698 | function IGCM_sys_ncrename { |
---|
[623] | 2699 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2700 | if ( $DEBUG_sys ) ; then |
---|
| 2701 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2702 | fi |
---|
[713] | 2703 | |
---|
| 2704 | typeset NB_ESSAI DELAI status i |
---|
| 2705 | # number of tentative |
---|
| 2706 | NB_ESSAI=3 |
---|
| 2707 | # time delay between tentative |
---|
| 2708 | DELAI=2 |
---|
| 2709 | |
---|
| 2710 | i=0 |
---|
| 2711 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2712 | ncrename $@ > out_rsync 2>&1 |
---|
| 2713 | status=$? |
---|
| 2714 | if [ ${status} -gt 0 ] ; then |
---|
| 2715 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2716 | cat out_rsync |
---|
| 2717 | \rm out_rsync |
---|
| 2718 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2719 | sleep $DELAI |
---|
[713] | 2720 | else |
---|
| 2721 | \rm out_rsync |
---|
| 2722 | break |
---|
| 2723 | fi |
---|
| 2724 | (( i = i + 1 )) |
---|
| 2725 | done |
---|
| 2726 | |
---|
| 2727 | if [ ${status} -gt 0 ] ; then |
---|
| 2728 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2729 | IGCM_debug_Exit "ncrename" |
---|
[623] | 2730 | fi |
---|
[622] | 2731 | |
---|
[623] | 2732 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[622] | 2733 | } |
---|
| 2734 | |
---|
| 2735 | function IGCM_sys_ncwa { |
---|
[623] | 2736 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2737 | if ( $DEBUG_sys ) ; then |
---|
| 2738 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2739 | fi |
---|
[713] | 2740 | |
---|
| 2741 | typeset NB_ESSAI DELAI status i |
---|
| 2742 | # number of tentative |
---|
| 2743 | NB_ESSAI=3 |
---|
| 2744 | # time delay between tentative |
---|
| 2745 | DELAI=2 |
---|
| 2746 | |
---|
| 2747 | i=0 |
---|
| 2748 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2749 | ncwa $@ > out_rsync 2>&1 |
---|
| 2750 | status=$? |
---|
| 2751 | if [ ${status} -gt 0 ] ; then |
---|
| 2752 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2753 | cat out_rsync |
---|
| 2754 | \rm out_rsync |
---|
| 2755 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2756 | sleep $DELAI |
---|
[713] | 2757 | else |
---|
| 2758 | \rm out_rsync |
---|
| 2759 | break |
---|
| 2760 | fi |
---|
| 2761 | (( i = i + 1 )) |
---|
| 2762 | done |
---|
| 2763 | |
---|
| 2764 | if [ ${status} -gt 0 ] ; then |
---|
| 2765 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2766 | IGCM_debug_Exit "ncwa" |
---|
[623] | 2767 | fi |
---|
[622] | 2768 | |
---|
[623] | 2769 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[622] | 2770 | } |
---|
[623] | 2771 | |
---|
| 2772 | ############################################################## |
---|
| 2773 | # CDO OPERATOR |
---|
| 2774 | |
---|
| 2775 | function IGCM_sys_cdo { |
---|
| 2776 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 2777 | if ( $DEBUG_sys ) ; then |
---|
| 2778 | echo "IGCM_sys_cdo :" $@ |
---|
| 2779 | fi |
---|
[713] | 2780 | |
---|
| 2781 | typeset status |
---|
| 2782 | |
---|
| 2783 | \cdo $@ > out_rsync 2>&1 |
---|
| 2784 | status=$? |
---|
| 2785 | if [ ${status} -gt 0 ] ; then |
---|
| 2786 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2787 | cat out_rsync |
---|
| 2788 | \rm out_rsync |
---|
[623] | 2789 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2790 | return 1 |
---|
| 2791 | else |
---|
| 2792 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2793 | return 0 |
---|
| 2794 | fi |
---|
| 2795 | |
---|
| 2796 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2797 | } |
---|