[622] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
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| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[623] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[622] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[623] | 21 | #D-LibIGCM_sys for Curie |
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[622] | 22 | #D-#================================================== |
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| 23 | #D- |
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[623] | 24 | #D- This ksh library if a layer under some usefull |
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[622] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=curie |
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| 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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| 77 | # rsync with path |
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| 78 | typeset -r RSYNC=/usr/bin/rsync |
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| 79 | # RSYNC_opt args to rsync |
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| 80 | typeset -r RSYNC_opt="-va" |
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| 81 | # ie storage filesystem |
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[623] | 82 | typeset -r STOREHOST=${MASTER} |
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[622] | 83 | |
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| 84 | #==================================================== |
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| 85 | # Source default environment |
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| 86 | #==================================================== |
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| 87 | ##. /etc/profile |
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| 88 | |
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| 89 | #==================================================== |
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| 90 | # Set environment tools (ferret, nco, cdo) |
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| 91 | #==================================================== |
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| 92 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_curie_ksh |
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| 93 | |
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| 94 | #==================================================== |
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| 95 | # Specific for ocean additionnal diagnostic |
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| 96 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 97 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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| 98 | |
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| 99 | #==================================================== |
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| 100 | # Host specific DIRECTORIES |
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| 101 | #==================================================== |
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| 102 | |
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[623] | 103 | # ============ CESIUM START ============ # |
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| 104 | |
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[622] | 105 | #==================================================== |
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[623] | 106 | #- Mirror libIGCM from titane to cesium if needed |
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| 107 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 108 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 109 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 110 | #else |
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| 111 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 112 | #fi |
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| 113 | |
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| 114 | #==================================================== |
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| 115 | #- libIGCM_POST |
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| 116 | #if ( ${MirrorlibIGCM} ) ; then |
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| 117 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 118 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 119 | #else |
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| 120 | # typeset -r libIGCM_POST=${libIGCM} |
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| 121 | #fi |
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| 122 | |
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| 123 | # ============ CESIUM END ============ # |
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| 124 | |
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| 125 | #==================================================== |
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| 126 | #- MirrorlibIGCM for frontend |
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| 127 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 128 | |
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| 129 | #==================================================== |
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| 130 | #- libIGCM_POST for frontend |
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| 131 | typeset -r libIGCM_POST=${libIGCM} |
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| 132 | |
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| 133 | #==================================================== |
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[622] | 134 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 135 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 136 | |
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| 137 | #==================================================== |
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| 138 | #- SUBMIT_DIR : submission dir |
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| 139 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}} |
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| 140 | |
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| 141 | #==================================================== |
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[623] | 142 | #- ARCHIVE (dedicated to large files) |
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[622] | 143 | typeset -r ARCHIVE=${CCCSTOREDIR} |
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| 144 | |
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[623] | 145 | #- ARCHIVE (dedicated to small/medium files) |
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| 146 | typeset -r STORAGE=${CCCWORKDIR} |
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[622] | 147 | |
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| 148 | #==================================================== |
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| 149 | #- IN |
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| 150 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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| 151 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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| 152 | |
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| 153 | #==================================================== |
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[623] | 154 | #- R_OUT |
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[622] | 155 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 156 | |
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| 157 | #==================================================== |
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[623] | 158 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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| 159 | typeset -r R_FIG=${STORAGE}/IGCM_OUT |
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[622] | 160 | |
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| 161 | #==================================================== |
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[623] | 162 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 163 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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| 164 | |
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| 165 | #==================================================== |
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| 166 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 167 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 168 | |
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| 169 | #==================================================== |
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[622] | 170 | #- OUT_POST |
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[623] | 171 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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[622] | 172 | |
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| 173 | #==================================================== |
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| 174 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 175 | if [ ! X${BRIDGE_MSUB_NPROC} = X1 ] ; then |
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[623] | 176 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}} |
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[622] | 177 | else |
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[623] | 178 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${BRIDGE_MSUB_JOBID}} |
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[622] | 179 | fi |
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| 180 | |
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| 181 | #==================================================== |
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| 182 | #- HOST_MPIRUN_COMMAND |
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| 183 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time ccc_mprun"} |
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| 184 | |
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| 185 | #==================================================== |
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| 186 | #- Max number of arguments passed to nco operator or demigration command |
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| 187 | UNIX_MAX_LIMIT=360 |
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| 188 | |
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[623] | 189 | #==================================================== |
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| 190 | #- set PackDefault true on curie |
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| 191 | PackDefault=true |
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| 192 | |
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[664] | 193 | #==================================================== |
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| 194 | #- Number of core per node (max number of OpenMP task) |
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[622] | 195 | NUM_COREPERNODE=8 |
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| 196 | |
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[623] | 197 | #==================================================== |
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| 198 | #- Default number of MPI task for IPSL coupled model |
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| 199 | #- required for backward compatibility |
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| 200 | #- |
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| 201 | DEFAULT_NUM_PROC_OCE=5 |
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| 202 | DEFAULT_NUM_PROC_CPL=1 |
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[637] | 203 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 204 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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[623] | 205 | |
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[622] | 206 | #D-#================================================== |
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| 207 | #D-function IGCM_sys_RshMaster |
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[623] | 208 | #D-* Purpose: Connection to frontend machine. |
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[622] | 209 | #D-* Examples: |
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| 210 | #D- |
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| 211 | function IGCM_sys_RshMaster { |
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[623] | 212 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 213 | /bin/ksh <<-EOF |
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[622] | 214 | export libIGCM=${libIGCM} |
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| 215 | export DEBUG_debug=${DEBUG_debug} |
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| 216 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 217 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 218 | ${@} |
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| 219 | EOF |
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[623] | 220 | if [ $? -gt 0 ] ; then |
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| 221 | echo "IGCM_sys_RshMaster : erreur." |
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| 222 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 223 | fi |
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| 224 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[622] | 225 | } |
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| 226 | |
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| 227 | #D-#================================================== |
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| 228 | #D-function IGCM_sys_RshArchive |
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| 229 | #D-* Purpose: Archive rsh command |
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| 230 | #D-* Examples: |
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| 231 | #D- |
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| 232 | function IGCM_sys_RshArchive { |
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[623] | 233 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 234 | /bin/ksh <<-EOF |
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[622] | 235 | ${@} |
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| 236 | EOF |
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[623] | 237 | if [ $? -gt 0 ] ; then |
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| 238 | echo "IGCM_sys_RshArchive : erreur." |
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| 239 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 240 | fi |
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| 241 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[622] | 242 | } |
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| 243 | |
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| 244 | #D-#================================================== |
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| 245 | #D-function IGCM_sys_RshPost |
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| 246 | #D-* Purpose: Post-process rsh command |
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| 247 | #D-* Examples: |
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| 248 | #D- |
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| 249 | function IGCM_sys_RshPost { |
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[623] | 250 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 251 | if ( $DEBUG_sys ) ; then |
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| 252 | echo "IGCM_sys_RshPost :" $@ |
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| 253 | fi |
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[622] | 254 | |
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[623] | 255 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 256 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 257 | # keep standard input (stdin) for the loop onto temporary file |
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| 258 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 259 | |
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| 260 | # ============ FRONTEND START ============ # |
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| 261 | |
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| 262 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 263 | if [ $? -gt 0 ] ; then |
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| 264 | echo "IGCM_sys_RshPost : erreur." |
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| 265 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 266 | fi |
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| 267 | # delete temporary file |
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| 268 | \rm tmp_IGCM_sys_RshPost_$$ |
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| 269 | |
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| 270 | # ============ FRONTEND END ============ # |
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| 271 | |
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| 272 | # ============ CESIUM START ============ # |
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| 273 | # typeset NB_ESSAI DELAI status i |
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| 274 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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| 275 | # #little hack so that rebuild submission is done on titane not an cesium |
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| 276 | # |
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| 277 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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| 278 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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| 279 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 280 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 281 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 282 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 283 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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| 284 | # |
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| 285 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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| 286 | # cat tmp_IGCM_sys_RshPost_$$ |
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| 287 | # |
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| 288 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 289 | # if [ $? -gt 0 ] ; then |
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| 290 | # echo "IGCM_sys_RshPost : erreur." |
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| 291 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 292 | # fi |
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| 293 | # # delete temporary file |
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| 294 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 295 | # |
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| 296 | # else |
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| 297 | # # number of tentative |
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| 298 | # NB_ESSAI=10 |
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| 299 | # # time delay between tentative |
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| 300 | # DELAI=10 |
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| 301 | # i=0 |
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| 302 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 303 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 304 | # status=$? |
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| 305 | # if [ ${status} -ne 0 ]; |
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| 306 | # then |
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| 307 | # sleep $DELAI |
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| 308 | # else |
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| 309 | # break |
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| 310 | # fi |
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| 311 | # let i=$i+1 |
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| 312 | # done |
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| 313 | # # delete temporary file |
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| 314 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 315 | # |
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| 316 | # if [ ${status} -gt 0 ] ; then |
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| 317 | # echo "IGCM_sys_RshPost : erreur." |
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| 318 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 319 | # fi |
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| 320 | # fi |
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| 321 | |
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| 322 | # ============ CESIUM END ============ # |
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| 323 | |
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| 324 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[622] | 325 | } |
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| 326 | |
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| 327 | #D-#================================================== |
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| 328 | #D-function IGCM_sys_SendMail |
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| 329 | #D-* Purpose: Send mail when simulation is over |
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| 330 | #D-* Examples: |
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| 331 | #D- |
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| 332 | function IGCM_sys_SendMail { |
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[623] | 333 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 334 | if ( $DEBUG_sys ) ; then |
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| 335 | echo "IGCM_sys_SendMail :" $@ |
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| 336 | fi |
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[622] | 337 | |
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[623] | 338 | if ( ${ExitFlag} ) ; then |
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| 339 | status=failed |
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| 340 | else |
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| 341 | status=completed |
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| 342 | fi |
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[622] | 343 | |
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[623] | 344 | cat << END_MAIL > job_end.mail |
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[622] | 345 | Dear ${LOGIN}, |
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| 346 | |
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| 347 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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| 348 | Job started : ${DateBegin} |
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| 349 | Job ended : ${DateEnd} |
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| 350 | Output files are available in ${R_SAVE} |
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[623] | 351 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 352 | Pre-packed files are temporarily available in ${R_BUFR} |
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[622] | 353 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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| 354 | END_MAIL |
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| 355 | |
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| 356 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[623] | 357 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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[622] | 358 | elif [ -f ~/.forward ] ; then |
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[623] | 359 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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[622] | 360 | fi |
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[623] | 361 | sleep 10 |
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| 362 | rm -f job_end.mail |
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[622] | 363 | |
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[623] | 364 | if [ $? -gt 0 ] ; then |
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| 365 | echo "IGCM_sys_SendMail : erreur." |
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| 366 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 367 | fi |
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| 368 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[622] | 369 | } |
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| 370 | |
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| 371 | #D-#================================================== |
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| 372 | #D-function IGCM_sys_Mkdir |
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| 373 | #D-* Purpose: Master locale mkdir command |
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| 374 | #D-* Examples: |
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| 375 | #D- |
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| 376 | function IGCM_sys_Mkdir { |
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[623] | 377 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 378 | if ( $DEBUG_sys ) ; then |
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| 379 | echo "IGCM_sys_Mkdir :" $@ |
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| 380 | fi |
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| 381 | if [ ! -d ${1} ]; then |
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| 382 | \mkdir -p $1 |
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| 383 | if [ $? -gt 0 ] ; then |
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| 384 | echo "IGCM_sys_Mkdir : erreur." |
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| 385 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[622] | 386 | fi |
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[623] | 387 | fi |
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| 388 | # vérification : |
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| 389 | if [ ! -d ${1} ] ; then |
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| 390 | echo "IGCM_sys_Mkdir : erreur." |
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| 391 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 392 | fi |
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| 393 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[622] | 394 | } |
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| 395 | |
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| 396 | #D-#================================================== |
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| 397 | #D-function IGCM_sys_MkdirArchive |
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| 398 | #D-* Purpose: Mkdir on Archive |
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| 399 | #D-* Examples: |
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| 400 | #D- |
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| 401 | function IGCM_sys_MkdirArchive { |
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[623] | 402 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 403 | if ( $DEBUG_sys ) ; then |
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| 404 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 405 | fi |
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| 406 | #- creation de repertoire sur le serveur fichier |
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| 407 | if [ ! -d ${1} ]; then |
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| 408 | \mkdir -p $1 |
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| 409 | if [ $? -gt 0 ] ; then |
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| 410 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 411 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[622] | 412 | fi |
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[623] | 413 | fi |
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| 414 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[622] | 415 | } |
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| 416 | |
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| 417 | #D-#================================================== |
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| 418 | #D-function IGCM_sys_MkdirWork |
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| 419 | #D-* Purpose: Mkdir on Work |
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| 420 | #D-* Examples: |
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| 421 | #D- |
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| 422 | function IGCM_sys_MkdirWork { |
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[623] | 423 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 424 | if ( $DEBUG_sys ) ; then |
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| 425 | echo "IGCM_sys_MkdirWork :" $@ |
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| 426 | fi |
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| 427 | #- creation de repertoire sur le serveur fichier |
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| 428 | if [ ! -d ${1} ]; then |
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| 429 | \mkdir -p $1 |
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| 430 | if [ $? -gt 0 ] ; then |
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| 431 | echo "IGCM_sys_MkdirWork : erreur." |
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| 432 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[622] | 433 | fi |
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[623] | 434 | fi |
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| 435 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[622] | 436 | } |
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| 437 | |
---|
| 438 | #D-#================================================== |
---|
| 439 | #D-function IGCM_sys_Cd |
---|
| 440 | #D-* Purpose: master cd command |
---|
| 441 | #D-* Examples: |
---|
| 442 | #D- |
---|
| 443 | function IGCM_sys_Cd { |
---|
[623] | 444 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 445 | if ( $DEBUG_sys ) ; then |
---|
| 446 | echo "IGCM_sys_Cd :" $@ |
---|
| 447 | fi |
---|
| 448 | \cd $1 |
---|
| 449 | if [ $? -gt 0 ] ; then |
---|
| 450 | echo "IGCM_sys_Cd : erreur." |
---|
| 451 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 452 | fi |
---|
| 453 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[622] | 454 | } |
---|
| 455 | |
---|
| 456 | #D-#================================================== |
---|
| 457 | #D-function IGCM_sys_Chmod |
---|
| 458 | #D-* Purpose: Chmod |
---|
| 459 | #D-* Examples: |
---|
| 460 | #D- |
---|
| 461 | function IGCM_sys_Chmod { |
---|
[623] | 462 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
---|
| 463 | if ( $DEBUG_sys ) ; then |
---|
| 464 | echo "IGCM_sys_Chmod :" $@ |
---|
| 465 | fi |
---|
| 466 | if [ $DRYRUN -le 1 ]; then |
---|
| 467 | \chmod $@ |
---|
| 468 | if [ $? -gt 0 ] ; then |
---|
| 469 | echo "IGCM_sys_Chmod : erreur." |
---|
| 470 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[622] | 471 | fi |
---|
[623] | 472 | else |
---|
| 473 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 474 | fi |
---|
| 475 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[622] | 476 | } |
---|
| 477 | |
---|
| 478 | #D-#================================================== |
---|
| 479 | #D-function IGCM_sys_FileSize |
---|
| 480 | #D-* Purpose: Filesize |
---|
| 481 | #D-* Examples: |
---|
| 482 | #D- |
---|
| 483 | function IGCM_sys_FileSize { |
---|
[623] | 484 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[622] | 485 | |
---|
[623] | 486 | typeset sizeF |
---|
| 487 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 488 | if [ $? -gt 0 ] ; then |
---|
| 489 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 490 | fi |
---|
| 491 | eval ${2}=${sizeF[4]} |
---|
[622] | 492 | |
---|
[623] | 493 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[622] | 494 | } |
---|
| 495 | |
---|
| 496 | #D-#================================================== |
---|
| 497 | #D-function IGCM_sys_TestDir |
---|
| 498 | #D-* Purpose: Test Directory that must exists |
---|
| 499 | #D-* Examples: |
---|
| 500 | #D- |
---|
| 501 | function IGCM_sys_TestDir { |
---|
[623] | 502 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 503 | if ( $DEBUG_sys ) ; then |
---|
| 504 | echo "IGCM_sys_TestDir :" $@ |
---|
| 505 | fi |
---|
| 506 | typeset ExistFlag |
---|
| 507 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 508 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[622] | 509 | |
---|
[623] | 510 | return ${ExistFlag} |
---|
[622] | 511 | } |
---|
| 512 | |
---|
| 513 | #D-#================================================== |
---|
| 514 | #D-function IGCM_sys_TestDirArchive |
---|
| 515 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 516 | #D-* Examples: |
---|
| 517 | #D- |
---|
| 518 | function IGCM_sys_TestDirArchive { |
---|
[623] | 519 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 520 | if ( $DEBUG_sys ) ; then |
---|
| 521 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 522 | fi |
---|
| 523 | typeset ExistFlag |
---|
| 524 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 525 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[622] | 526 | |
---|
[623] | 527 | return ${ExistFlag} |
---|
[622] | 528 | } |
---|
| 529 | |
---|
| 530 | #D-#================================================== |
---|
[623] | 531 | #D-function IGCM_sys_IsFileArchived |
---|
| 532 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 533 | #D-* Examples: |
---|
| 534 | #D- |
---|
| 535 | function IGCM_sys_IsFileArchived { |
---|
| 536 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 537 | if ( $DEBUG_sys ) ; then |
---|
| 538 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 539 | fi |
---|
| 540 | typeset IsArchivedFlag |
---|
| 541 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
| 542 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 543 | |
---|
| 544 | return ${IsArchivedFlag} |
---|
| 545 | } |
---|
| 546 | |
---|
| 547 | #D-#================================================== |
---|
[622] | 548 | #D-function IGCM_sys_TestFileArchive |
---|
| 549 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 550 | #D-* Examples: |
---|
| 551 | #D- |
---|
| 552 | function IGCM_sys_TestFileArchive { |
---|
[623] | 553 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 554 | typeset ExistFlag |
---|
| 555 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 556 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[622] | 557 | |
---|
[623] | 558 | return ${ExistFlag} |
---|
[622] | 559 | } |
---|
| 560 | |
---|
| 561 | #D-#================================================== |
---|
[623] | 562 | #D-function IGCM_sys_TestFileBuffer |
---|
| 563 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 564 | #D-* Examples: |
---|
| 565 | #D- |
---|
| 566 | function IGCM_sys_TestFileBuffer { |
---|
| 567 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 568 | typeset ExistFlag |
---|
| 569 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 570 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 571 | |
---|
| 572 | return ${ExistFlag} |
---|
| 573 | } |
---|
| 574 | |
---|
| 575 | #D-#================================================== |
---|
[622] | 576 | #D-function IGCM_sys_CountFileArchive |
---|
| 577 | #D-* Purpose: Count files on Archive filesystem |
---|
| 578 | #D-* Examples: |
---|
| 579 | #D- |
---|
| 580 | function IGCM_sys_CountFileArchive { |
---|
[623] | 581 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 582 | ls ${@} 2>/dev/null | wc -l |
---|
| 583 | if [ $? -gt 0 ] ; then |
---|
| 584 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 585 | fi |
---|
| 586 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[622] | 587 | } |
---|
| 588 | |
---|
| 589 | #D-#================================================== |
---|
[623] | 590 | #D-function IGCM_sys_CountFileBuffer |
---|
| 591 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 592 | #D-* Examples: |
---|
| 593 | #D- |
---|
| 594 | function IGCM_sys_CountFileBuffer { |
---|
| 595 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 596 | ls ${@} 2>/dev/null | wc -l |
---|
| 597 | if [ $? -gt 0 ] ; then |
---|
| 598 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 599 | fi |
---|
| 600 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 601 | } |
---|
| 602 | |
---|
| 603 | #D-#================================================== |
---|
[622] | 604 | #D-function IGCM_sys_Tree |
---|
| 605 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 606 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 607 | #D- |
---|
| 608 | function IGCM_sys_Tree { |
---|
[623] | 609 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 610 | if ( $DEBUG_sys ) ; then |
---|
| 611 | echo "IGCM_sys_Tree :" $@ |
---|
| 612 | fi |
---|
[622] | 613 | |
---|
[623] | 614 | \ls -lR ${@} |
---|
[622] | 615 | |
---|
[623] | 616 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[622] | 617 | } |
---|
| 618 | |
---|
| 619 | #D-#================================================== |
---|
| 620 | #D-function IGCM_sys_Tar |
---|
[623] | 621 | #D-* Purpose: master tar command |
---|
[622] | 622 | #D-* Examples: |
---|
| 623 | #D- |
---|
| 624 | function IGCM_sys_Tar { |
---|
[623] | 625 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 626 | if ( $DEBUG_sys ) ; then |
---|
| 627 | echo "IGCM_sys_Tar :" $@ |
---|
| 628 | fi |
---|
| 629 | \tar cf $@ |
---|
| 630 | if [ $? -gt 0 ] ; then |
---|
| 631 | echo "IGCM_sys_Tar : erreur." |
---|
| 632 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 633 | fi |
---|
| 634 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[622] | 635 | } |
---|
| 636 | |
---|
| 637 | #D-#================================================== |
---|
| 638 | #D-function IGCM_sys_UnTar |
---|
| 639 | #D-* Purpose: master un-tar command |
---|
| 640 | #D-* Examples: |
---|
| 641 | #D- |
---|
| 642 | function IGCM_sys_UnTar { |
---|
[623] | 643 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 644 | if ( $DEBUG_sys ) ; then |
---|
| 645 | echo "IGCM_sys_UnTar :" $@ |
---|
| 646 | fi |
---|
| 647 | \tar xvf $1 |
---|
| 648 | if [ $? -gt 0 ] ; then |
---|
| 649 | echo "IGCM_sys_UnTar : erreur." |
---|
| 650 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 651 | fi |
---|
| 652 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[622] | 653 | } |
---|
| 654 | |
---|
| 655 | #D-#================================================== |
---|
| 656 | #D-function IGCM_sys_Qsub |
---|
| 657 | #D-* Purpose: Qsub new job |
---|
| 658 | #D-* Examples: |
---|
| 659 | #D- |
---|
| 660 | function IGCM_sys_Qsub { |
---|
[623] | 661 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 662 | if ( $DEBUG_sys ) ; then |
---|
| 663 | echo "IGCM_sys_Qsub :" $@ |
---|
| 664 | fi |
---|
| 665 | typeset options |
---|
| 666 | if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then |
---|
| 667 | options=" -o ${Script_Output} -e ${Script_Output}" |
---|
| 668 | else |
---|
| 669 | options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}" |
---|
| 670 | fi |
---|
[622] | 671 | |
---|
[625] | 672 | /usr/bin/ccc_msub ${options} < $1 |
---|
[623] | 673 | if [ $? -gt 0 ] ; then |
---|
| 674 | echo "IGCM_sys_Qsub : erreur ${options} $1" |
---|
| 675 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 676 | fi |
---|
| 677 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[622] | 678 | } |
---|
| 679 | |
---|
| 680 | #D-#================================================== |
---|
| 681 | #D-function IGCM_sys_QsubPost |
---|
| 682 | #D-* Purpose: Qsub new job on scalaire |
---|
| 683 | #D-* Examples: |
---|
| 684 | #D- |
---|
| 685 | function IGCM_sys_QsubPost { |
---|
[623] | 686 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 687 | if ( $DEBUG_sys ) ; then |
---|
| 688 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 689 | fi |
---|
| 690 | /usr/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job |
---|
| 691 | if [ $? -gt 0 ] ; then |
---|
| 692 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 693 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 694 | fi |
---|
| 695 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[622] | 696 | } |
---|
| 697 | |
---|
| 698 | #D-************************* |
---|
[623] | 699 | #D- File transfer functions |
---|
[622] | 700 | #D-************************* |
---|
| 701 | #D- |
---|
| 702 | |
---|
| 703 | #D-#================================================== |
---|
| 704 | #D-function IGCM_sys_Rsync_out |
---|
| 705 | #D-* Purpose: treat return val of rsync |
---|
| 706 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 707 | #D- Error values and explanations can depend on your system version. |
---|
| 708 | function IGCM_sys_Rsync_out { |
---|
[623] | 709 | RET=$1 |
---|
| 710 | if [ ! $RET ] ; then |
---|
| 711 | echo "rsync error !" |
---|
| 712 | fi |
---|
[622] | 713 | |
---|
[623] | 714 | if [ $MYLANG = "fr" ]; then |
---|
| 715 | case $RET in |
---|
| 716 | 0) return ;; |
---|
| 717 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 718 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 719 | return;; |
---|
| 720 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 721 | echo "Incompatibilité de protocole." |
---|
| 722 | return;; |
---|
| 723 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 724 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 725 | echo "répertoires" |
---|
| 726 | return;; |
---|
| 727 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 728 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 729 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 730 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 731 | echo "pas par le serveur a été spécifiée." |
---|
| 732 | return;; |
---|
| 733 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 734 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 735 | return;; |
---|
| 736 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 737 | echo "Erreur d'entrée sortie fichier" |
---|
| 738 | return;; |
---|
| 739 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 740 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 741 | return;; |
---|
| 742 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 743 | echo "Erreur avec les diagnostics du programme" |
---|
| 744 | return;; |
---|
| 745 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 746 | echo "Erreur dans le code IPC" |
---|
| 747 | return;; |
---|
| 748 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 749 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 750 | return;; |
---|
| 751 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 752 | echo "Une erreur retournée par waitpid()" |
---|
| 753 | return;; |
---|
| 754 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 755 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 756 | return;; |
---|
| 757 | 23) echo "" |
---|
| 758 | echo "Erreur fichier inexistant" |
---|
| 759 | return;; |
---|
| 760 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 761 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 762 | return;; |
---|
| 763 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 764 | return;; |
---|
| 765 | esac |
---|
| 766 | elif [ $MYLANG = "en" ] ; then |
---|
| 767 | case $RET in |
---|
| 768 | 0) return;; |
---|
| 769 | 1) echo "rsync error : Syntax or usage error " |
---|
| 770 | return;; |
---|
| 771 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 772 | return;; |
---|
| 773 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 774 | return;; |
---|
| 775 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 776 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 777 | echo "them; or an option was specified that is supported by the client and" |
---|
| 778 | echo "not by the server." |
---|
| 779 | return;; |
---|
| 780 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 781 | return;; |
---|
| 782 | 10) echo "rsync error : Error in socket I/O " |
---|
| 783 | return;; |
---|
| 784 | 11) echo "rsync error : Error in file I/O " |
---|
| 785 | return;; |
---|
| 786 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 787 | return;; |
---|
| 788 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 789 | return;; |
---|
| 790 | 14) echo "rsync error : Error in IPC code " |
---|
| 791 | return;; |
---|
| 792 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 793 | return;; |
---|
| 794 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 795 | return;; |
---|
| 796 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 797 | return;; |
---|
| 798 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 799 | return;; |
---|
| 800 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 801 | return;; |
---|
| 802 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 803 | return;; |
---|
| 804 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 805 | return;; |
---|
| 806 | esac |
---|
| 807 | else |
---|
| 808 | echo "unknown language $MYLANG." |
---|
| 809 | return |
---|
| 810 | fi |
---|
[622] | 811 | } |
---|
| 812 | |
---|
| 813 | #D-#================================================== |
---|
| 814 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 815 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 816 | #D-* Examples: |
---|
| 817 | #D- |
---|
| 818 | function IGCM_sys_Mirror_libIGCM { |
---|
[623] | 819 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 820 | if ( $DEBUG_sys ) ; then |
---|
| 821 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 822 | fi |
---|
[622] | 823 | |
---|
[623] | 824 | typeset RET DEST |
---|
[622] | 825 | |
---|
[623] | 826 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[622] | 827 | |
---|
[623] | 828 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 829 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
| 830 | RET=$? |
---|
[622] | 831 | |
---|
[623] | 832 | if [ ${RET} -gt 0 ] ; then |
---|
| 833 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 834 | cat out_rsync |
---|
| 835 | fi |
---|
| 836 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[622] | 837 | } |
---|
| 838 | |
---|
| 839 | #==================================================== |
---|
| 840 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 841 | if ( $MirrorlibIGCM ) ; then |
---|
[623] | 842 | IGCM_sys_Mirror_libIGCM |
---|
[622] | 843 | fi |
---|
| 844 | |
---|
| 845 | #D-#================================================== |
---|
| 846 | #D-function IGCM_sys_Cp |
---|
| 847 | #D-* Purpose: generic cp |
---|
| 848 | #D-* Examples: |
---|
| 849 | #D- |
---|
| 850 | function IGCM_sys_Cp { |
---|
[623] | 851 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 852 | if ( $DEBUG_sys ) ; then |
---|
| 853 | echo "IGCM_sys_Cp :" $@ |
---|
| 854 | fi |
---|
[622] | 855 | |
---|
[623] | 856 | typeset RET |
---|
[622] | 857 | |
---|
[623] | 858 | echo cp $@ > out_rsync 2>&1 |
---|
| 859 | \cp $@ >> out_rsync 2>&1 |
---|
| 860 | RET=$? |
---|
[622] | 861 | |
---|
[623] | 862 | if [ ${RET} -gt 0 ] ; then |
---|
| 863 | echo "IGCM_sys_Cp : error." |
---|
| 864 | cat out_rsync |
---|
| 865 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 866 | else |
---|
| 867 | \rm out_rsync |
---|
| 868 | fi |
---|
| 869 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[622] | 870 | } |
---|
| 871 | |
---|
| 872 | #D-#================================================== |
---|
| 873 | #D-function IGCM_sys_Rm |
---|
| 874 | #D-* Purpose: generic rm |
---|
| 875 | #D-* Examples: |
---|
| 876 | #D- |
---|
| 877 | function IGCM_sys_Rm { |
---|
[623] | 878 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 879 | if ( $DEBUG_sys ) ; then |
---|
| 880 | echo "IGCM_sys_Rm :" $@ |
---|
| 881 | fi |
---|
[622] | 882 | |
---|
[623] | 883 | typeset RET |
---|
[622] | 884 | |
---|
[623] | 885 | echo rm $@ > out_rsync 2>&1 |
---|
| 886 | \rm $@ >> out_rsync 2>&1 |
---|
| 887 | RET=$? |
---|
[622] | 888 | |
---|
[623] | 889 | if [ ${RET} -gt 0 ] ; then |
---|
| 890 | echo "IGCM_sys_Rm : error." |
---|
| 891 | cat out_rsync |
---|
| 892 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 893 | else |
---|
| 894 | \rm out_rsync |
---|
| 895 | fi |
---|
| 896 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[622] | 897 | } |
---|
| 898 | |
---|
| 899 | #D-#================================================== |
---|
| 900 | #D-function IGCM_sys_RmRunDir |
---|
| 901 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 902 | #D- scheduler will do the job) |
---|
| 903 | #D-* Examples: |
---|
| 904 | #D- |
---|
| 905 | function IGCM_sys_RmRunDir { |
---|
[623] | 906 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 907 | if ( $DEBUG_sys ) ; then |
---|
| 908 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 909 | fi |
---|
[622] | 910 | |
---|
[623] | 911 | typeset RET |
---|
[622] | 912 | |
---|
[623] | 913 | echo rm $@ > out_rsync 2>&1 |
---|
| 914 | \rm $@ >> out_rsync 2>&1 |
---|
| 915 | RET=$? |
---|
[622] | 916 | |
---|
[623] | 917 | if [ ${RET} -gt 0 ] ; then |
---|
| 918 | echo "IGCM_sys_RmRunDir : error." |
---|
| 919 | cat out_rsync |
---|
| 920 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 921 | else |
---|
| 922 | \rm out_rsync |
---|
| 923 | fi |
---|
| 924 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[622] | 925 | } |
---|
| 926 | |
---|
| 927 | #D-#================================================== |
---|
| 928 | #D-function IGCM_sys_Mv |
---|
| 929 | #D-* Purpose: generic move |
---|
| 930 | #D-* Examples: |
---|
| 931 | #D- |
---|
| 932 | function IGCM_sys_Mv { |
---|
[623] | 933 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 934 | if ( $DEBUG_sys ) ; then |
---|
| 935 | echo "IGCM_sys_Mv :" $@ |
---|
| 936 | fi |
---|
[622] | 937 | |
---|
[623] | 938 | if [ $DRYRUN = 0 ]; then |
---|
[622] | 939 | |
---|
[623] | 940 | typeset RET |
---|
| 941 | |
---|
| 942 | echo mv $@ > out_rsync 2>&1 |
---|
| 943 | \mv $@ >> out_rsync 2>&1 |
---|
| 944 | RET=$? |
---|
| 945 | |
---|
| 946 | if [ ${RET} -gt 0 ] ; then |
---|
| 947 | echo "IGCM_sys_Mv : error in mv." |
---|
| 948 | cat out_rsync |
---|
| 949 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[622] | 950 | else |
---|
[623] | 951 | \rm out_rsync |
---|
[622] | 952 | fi |
---|
[623] | 953 | else |
---|
| 954 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 955 | fi |
---|
[622] | 956 | |
---|
[623] | 957 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[622] | 958 | } |
---|
| 959 | |
---|
| 960 | #D-#================================================== |
---|
| 961 | #D-function IGCM_sys_Put_Dir |
---|
| 962 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 963 | #D-* Examples: |
---|
| 964 | #D- |
---|
| 965 | function IGCM_sys_Put_Dir { |
---|
[623] | 966 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 967 | if ( $DEBUG_sys ) ; then |
---|
| 968 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 969 | fi |
---|
| 970 | if [ $DRYRUN = 0 ]; then |
---|
| 971 | if [ ! -d ${1} ] ; then |
---|
| 972 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 973 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 974 | return |
---|
[622] | 975 | fi |
---|
| 976 | |
---|
[623] | 977 | typeset RET |
---|
[622] | 978 | |
---|
[623] | 979 | # Only if we use rsync |
---|
| 980 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 981 | # |
---|
| 982 | #USUAL WAY |
---|
| 983 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 984 | RET=$? |
---|
[622] | 985 | |
---|
[623] | 986 | if [ ${RET} -gt 0 ] ; then |
---|
| 987 | echo "IGCM_sys_Put_Dir : error." |
---|
| 988 | cat out_rsync |
---|
| 989 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[622] | 990 | else |
---|
[623] | 991 | \rm out_rsync |
---|
[622] | 992 | fi |
---|
[623] | 993 | else |
---|
| 994 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 995 | fi |
---|
| 996 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[622] | 997 | } |
---|
| 998 | |
---|
| 999 | #D-#================================================== |
---|
| 1000 | #D-function IGCM_sys_Get_Dir |
---|
[623] | 1001 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[622] | 1002 | #D-* Examples: |
---|
| 1003 | #D- |
---|
| 1004 | function IGCM_sys_Get_Dir { |
---|
[623] | 1005 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 1006 | if ( $DEBUG_sys ) ; then |
---|
| 1007 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 1008 | fi |
---|
| 1009 | if [ $DRYRUN = 0 ]; then |
---|
| 1010 | # if [ ! -d ${1} ] ; then |
---|
| 1011 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 1012 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 1013 | # return |
---|
| 1014 | # fi |
---|
[622] | 1015 | |
---|
[623] | 1016 | typeset RET |
---|
[622] | 1017 | |
---|
[623] | 1018 | # Only if we use rsync |
---|
| 1019 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1020 | # |
---|
| 1021 | #USUAL WAY |
---|
[622] | 1022 | # add get (to demigrate all offline files) to reduce time of this command : |
---|
[623] | 1023 | ccc_hsm get $1/* |
---|
| 1024 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 1025 | RET=$? |
---|
[622] | 1026 | |
---|
[623] | 1027 | if [ ${RET} -gt 0 ] ; then |
---|
| 1028 | echo "IGCM_sys_Get_Dir : error." |
---|
| 1029 | cat out_rsync |
---|
| 1030 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[622] | 1031 | else |
---|
[623] | 1032 | \rm out_rsync |
---|
[622] | 1033 | fi |
---|
[623] | 1034 | else |
---|
| 1035 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1036 | fi |
---|
| 1037 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[622] | 1038 | } |
---|
| 1039 | |
---|
| 1040 | #D-#================================================== |
---|
| 1041 | #D-function IGCM_sys_Get_Master |
---|
| 1042 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 1043 | #D-* Examples: |
---|
| 1044 | #D- |
---|
| 1045 | function IGCM_sys_Get_Master { |
---|
[623] | 1046 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 1047 | if ( $DEBUG_sys ) ; then |
---|
| 1048 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 1049 | fi |
---|
| 1050 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 1051 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[623] | 1052 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 1053 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 1054 | return |
---|
[622] | 1055 | fi |
---|
| 1056 | |
---|
[623] | 1057 | typeset RET |
---|
[622] | 1058 | |
---|
[623] | 1059 | #USUAL WAY |
---|
| 1060 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 1061 | RET=$? |
---|
[622] | 1062 | |
---|
[623] | 1063 | if [ ${RET} -gt 0 ] ; then |
---|
| 1064 | echo "IGCM_sys_Get_Master : error." |
---|
| 1065 | cat out_rsync |
---|
| 1066 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[622] | 1067 | else |
---|
[623] | 1068 | \rm out_rsync |
---|
[622] | 1069 | fi |
---|
[623] | 1070 | else |
---|
| 1071 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1072 | fi |
---|
| 1073 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[622] | 1074 | } |
---|
| 1075 | |
---|
| 1076 | #D-#================================================== |
---|
| 1077 | #D-function IGCM_sys_Put_Rest |
---|
[623] | 1078 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[622] | 1079 | #D- File and target directory must exist. |
---|
| 1080 | #D-* Examples: |
---|
| 1081 | #D- |
---|
| 1082 | function IGCM_sys_Put_Rest { |
---|
[623] | 1083 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1084 | if ( $DEBUG_sys ) ; then |
---|
| 1085 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1086 | fi |
---|
| 1087 | if [ $DRYRUN = 0 ]; then |
---|
| 1088 | if [ ! -f ${1} ] ; then |
---|
| 1089 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1090 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1091 | fi |
---|
| 1092 | |
---|
[623] | 1093 | typeset RET |
---|
| 1094 | # |
---|
| 1095 | if [ X${JobType} = XRUN ] ; then |
---|
| 1096 | IGCM_sys_Chmod 444 ${1} |
---|
| 1097 | fi |
---|
[622] | 1098 | |
---|
[623] | 1099 | # |
---|
| 1100 | # USUAL WAY |
---|
| 1101 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1102 | RET=$? |
---|
[622] | 1103 | |
---|
[623] | 1104 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1105 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1106 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[622] | 1107 | |
---|
[623] | 1108 | # #RSYNC WITH NFS USE |
---|
| 1109 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1110 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[622] | 1111 | |
---|
[623] | 1112 | # RET=$? |
---|
| 1113 | # IGCM_sys_Rsync_out $RET |
---|
[622] | 1114 | |
---|
[623] | 1115 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1116 | # (( RET=RET+$? )) |
---|
| 1117 | |
---|
| 1118 | if [ ${RET} -gt 0 ] ; then |
---|
| 1119 | echo "IGCM_sys_Put_Rest : error." |
---|
| 1120 | cat out_rsync |
---|
| 1121 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1122 | else |
---|
[623] | 1123 | \rm out_rsync |
---|
[622] | 1124 | fi |
---|
[623] | 1125 | else |
---|
| 1126 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1127 | fi |
---|
| 1128 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[622] | 1129 | } |
---|
| 1130 | |
---|
| 1131 | #D-#================================================== |
---|
[623] | 1132 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1133 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1134 | #D- File and target directory must exist. |
---|
| 1135 | #D-* Examples: |
---|
| 1136 | #D- |
---|
| 1137 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1138 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1139 | if ( $DEBUG_sys ) ; then |
---|
| 1140 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1141 | fi |
---|
| 1142 | if [ $DRYRUN = 0 ]; then |
---|
| 1143 | if [ ! -f ${1} ] ; then |
---|
| 1144 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1145 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1146 | fi |
---|
| 1147 | |
---|
| 1148 | typeset RET |
---|
| 1149 | # |
---|
| 1150 | if [ X${JobType} = XRUN ] ; then |
---|
| 1151 | IGCM_sys_Chmod 444 ${1} |
---|
| 1152 | fi |
---|
| 1153 | |
---|
| 1154 | # |
---|
| 1155 | # USUAL WAY |
---|
| 1156 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1157 | RET=$? |
---|
| 1158 | |
---|
| 1159 | if [ ${RET} -gt 0 ] ; then |
---|
| 1160 | echo "IGCM_sys_PutBuffer_Rest : error." |
---|
| 1161 | cat out_rsync |
---|
| 1162 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1163 | else |
---|
| 1164 | \rm out_rsync |
---|
| 1165 | fi |
---|
| 1166 | else |
---|
| 1167 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1168 | fi |
---|
| 1169 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1170 | } |
---|
| 1171 | |
---|
| 1172 | #D-#================================================== |
---|
[622] | 1173 | #D-function IGCM_sys_Put_Out |
---|
[623] | 1174 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[622] | 1175 | #D-* Examples: |
---|
| 1176 | #D- |
---|
| 1177 | function IGCM_sys_Put_Out { |
---|
[623] | 1178 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1179 | if ( $DEBUG_sys ) ; then |
---|
| 1180 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1181 | fi |
---|
| 1182 | if [ $DRYRUN = 0 ]; then |
---|
| 1183 | if [ ! -f ${1} ] ; then |
---|
| 1184 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1185 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1186 | return 1 |
---|
[622] | 1187 | fi |
---|
[623] | 1188 | # |
---|
| 1189 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1190 | # |
---|
| 1191 | typeset RET |
---|
[622] | 1192 | |
---|
[623] | 1193 | #===================================================== |
---|
| 1194 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1195 | #===================================================== |
---|
[622] | 1196 | |
---|
[623] | 1197 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1198 | #if [ $? -eq 0 ] ; then |
---|
| 1199 | # typeset WORKPATH FILEPATH |
---|
| 1200 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
| 1201 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 1202 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1203 | # # |
---|
| 1204 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1205 | #fi |
---|
[622] | 1206 | |
---|
[623] | 1207 | if [ X${JobType} = XRUN ] ; then |
---|
| 1208 | if [ X${3} = X ] ; then |
---|
| 1209 | IGCM_sys_Chmod 444 ${1} |
---|
| 1210 | fi |
---|
| 1211 | fi |
---|
| 1212 | # |
---|
| 1213 | # USUAL WAY |
---|
| 1214 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1215 | RET=$? |
---|
[622] | 1216 | |
---|
[623] | 1217 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1218 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1219 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[622] | 1220 | |
---|
[623] | 1221 | # #RSYNC WITH NFS USE |
---|
| 1222 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1223 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[622] | 1224 | |
---|
[623] | 1225 | # RET=$? |
---|
| 1226 | # IGCM_sys_Rsync_out $RET |
---|
[622] | 1227 | |
---|
[623] | 1228 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1229 | # (( RET=RET+$? )) |
---|
[622] | 1230 | |
---|
[623] | 1231 | if [ ${RET} -gt 0 ] ; then |
---|
| 1232 | echo "IGCM_sys_Put_Out : error." |
---|
| 1233 | cat out_rsync |
---|
| 1234 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[622] | 1235 | else |
---|
[623] | 1236 | \rm out_rsync |
---|
[622] | 1237 | fi |
---|
[623] | 1238 | else |
---|
| 1239 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1240 | fi |
---|
| 1241 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1242 | return 0 |
---|
[622] | 1243 | } |
---|
| 1244 | |
---|
| 1245 | #D-#================================================== |
---|
[623] | 1246 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1247 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1248 | #D-* Examples: |
---|
| 1249 | #D- |
---|
| 1250 | function IGCM_sys_PutBuffer_Out { |
---|
| 1251 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1252 | if ( $DEBUG_sys ) ; then |
---|
| 1253 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1254 | fi |
---|
| 1255 | if [ $DRYRUN = 0 ]; then |
---|
| 1256 | if [ ! -f ${1} ] ; then |
---|
| 1257 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1258 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1259 | return 1 |
---|
| 1260 | fi |
---|
| 1261 | # |
---|
| 1262 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1263 | # |
---|
| 1264 | typeset RET |
---|
| 1265 | |
---|
| 1266 | if [ X${JobType} = XRUN ] ; then |
---|
| 1267 | if [ X${3} = X ] ; then |
---|
| 1268 | IGCM_sys_Chmod 444 ${1} |
---|
| 1269 | fi |
---|
| 1270 | fi |
---|
| 1271 | # |
---|
| 1272 | # USUAL WAY |
---|
| 1273 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1274 | RET=$? |
---|
| 1275 | |
---|
| 1276 | if [ ${RET} -gt 0 ] ; then |
---|
| 1277 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1278 | cat out_rsync |
---|
| 1279 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1280 | else |
---|
| 1281 | \rm out_rsync |
---|
| 1282 | fi |
---|
| 1283 | else |
---|
| 1284 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1285 | fi |
---|
| 1286 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1287 | return 0 |
---|
| 1288 | } |
---|
| 1289 | |
---|
| 1290 | #D-#================================================== |
---|
[622] | 1291 | #D-function IGCM_sys_Get |
---|
| 1292 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1293 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1294 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1295 | function IGCM_sys_Get { |
---|
[623] | 1296 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[622] | 1297 | |
---|
[623] | 1298 | typeset DEST RET dm_liste ifile target file_work |
---|
[622] | 1299 | |
---|
[623] | 1300 | if ( $DEBUG_sys ) ; then |
---|
| 1301 | echo "IGCM_sys_Get :" $@ |
---|
| 1302 | fi |
---|
| 1303 | if [ $DRYRUN -le 2 ]; then |
---|
| 1304 | if [ X${1} = X'/l' ] ; then |
---|
| 1305 | # test if the first file is present in the old computation : |
---|
| 1306 | eval set +A dm_liste \${${2}} |
---|
| 1307 | else |
---|
| 1308 | eval set +A dm_liste ${1} |
---|
[622] | 1309 | fi |
---|
[623] | 1310 | eval DEST=\${${#}} |
---|
[622] | 1311 | |
---|
[623] | 1312 | #===================================================== |
---|
| 1313 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1314 | #===================================================== |
---|
[622] | 1315 | |
---|
[623] | 1316 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1317 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1318 | #if [ $? -eq 0 ] ; then |
---|
| 1319 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1320 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1321 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1322 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1323 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1324 | # return |
---|
| 1325 | # fi |
---|
| 1326 | #fi |
---|
[622] | 1327 | |
---|
[623] | 1328 | # test if the (first) file is present in the old computation : |
---|
| 1329 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 1330 | RET=$? |
---|
| 1331 | if [ ${RET} -gt 0 ] ; then |
---|
| 1332 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1333 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1334 | fi |
---|
[622] | 1335 | |
---|
[623] | 1336 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1337 | RET=$? |
---|
| 1338 | if [ ${RET} -gt 0 ] ; then |
---|
| 1339 | echo "WARNING IGCM_sys_Get : demigration error." |
---|
| 1340 | cat out_rsync |
---|
| 1341 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1342 | fi |
---|
[622] | 1343 | |
---|
[623] | 1344 | #if [ ${RET} -gt 0 ] ; then |
---|
| 1345 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1346 | # cat out_rsync |
---|
| 1347 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1348 | # sleep 30 |
---|
| 1349 | # echo "We try another time" |
---|
| 1350 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1351 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1352 | # RET=$? |
---|
| 1353 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1354 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1355 | # cat out_rsync |
---|
| 1356 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1357 | # fi |
---|
| 1358 | # else |
---|
| 1359 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1360 | # cat out_rsync |
---|
| 1361 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1362 | # fi |
---|
| 1363 | #fi |
---|
[622] | 1364 | |
---|
[623] | 1365 | #USUAL WAY |
---|
| 1366 | if [ X${1} = X'/l' ] ; then |
---|
| 1367 | (( RET=0 )) |
---|
| 1368 | for target in ${dm_liste[*]} ; do |
---|
| 1369 | local_file=$( basename ${target} ) |
---|
| 1370 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1371 | (( RET = RET + $? )) |
---|
| 1372 | done |
---|
| 1373 | else |
---|
| 1374 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1375 | RET=$? |
---|
| 1376 | fi |
---|
[622] | 1377 | |
---|
[623] | 1378 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1379 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1380 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[622] | 1381 | |
---|
[623] | 1382 | # #RSYNC WITH NFS USE |
---|
| 1383 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1384 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[622] | 1385 | |
---|
[623] | 1386 | # RET=$? |
---|
| 1387 | # IGCM_sys_Rsync_out $RET |
---|
[622] | 1388 | |
---|
[623] | 1389 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1390 | # (( RET=RET+$? )) |
---|
[622] | 1391 | |
---|
[623] | 1392 | if [ ${RET} -gt 0 ] ; then |
---|
| 1393 | echo "IGCM_sys_Get : copy error." |
---|
| 1394 | cat out_rsync |
---|
| 1395 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1396 | else |
---|
| 1397 | \rm out_rsync |
---|
| 1398 | fi |
---|
| 1399 | else |
---|
| 1400 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1401 | fi |
---|
| 1402 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1403 | } |
---|
[622] | 1404 | |
---|
[623] | 1405 | #D-#================================================== |
---|
| 1406 | #D-function IGCM_sys_GetBuffer |
---|
| 1407 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1408 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1409 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1410 | function IGCM_sys_GetBuffer { |
---|
| 1411 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1412 | |
---|
| 1413 | typeset DEST RET buf_liste ifile target file_work |
---|
| 1414 | |
---|
| 1415 | if ( $DEBUG_sys ) ; then |
---|
| 1416 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1417 | fi |
---|
| 1418 | if [ $DRYRUN -le 2 ]; then |
---|
| 1419 | if [ X${1} = X'/l' ] ; then |
---|
| 1420 | # test if the first file is present in the old computation : |
---|
| 1421 | eval set +A buf_liste \${${2}} |
---|
[622] | 1422 | else |
---|
[623] | 1423 | eval set +A buf_liste ${1} |
---|
[622] | 1424 | fi |
---|
[623] | 1425 | eval DEST=\${${#}} |
---|
| 1426 | |
---|
| 1427 | #USUAL WAY |
---|
| 1428 | if [ X${1} = X'/l' ] ; then |
---|
| 1429 | (( RET=0 )) |
---|
| 1430 | for target in ${buf_liste[*]} ; do |
---|
| 1431 | local_file=$( basename ${target} ) |
---|
| 1432 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1433 | (( RET = RET + $? )) |
---|
| 1434 | done |
---|
| 1435 | else |
---|
| 1436 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1437 | RET=$? |
---|
| 1438 | fi |
---|
| 1439 | |
---|
| 1440 | if [ ${RET} -gt 0 ] ; then |
---|
| 1441 | echo "IGCM_sys_GetBuffer : copy error." |
---|
| 1442 | cat out_rsync |
---|
| 1443 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1444 | else |
---|
| 1445 | \rm out_rsync |
---|
| 1446 | fi |
---|
| 1447 | else |
---|
| 1448 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1449 | fi |
---|
| 1450 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
[622] | 1451 | } |
---|
| 1452 | |
---|
| 1453 | #D-#================================================== |
---|
| 1454 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1455 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1456 | #D-* Examples: |
---|
| 1457 | #D- |
---|
| 1458 | function IGCM_sys_GetDate_FichWork { |
---|
[623] | 1459 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1460 | if ( $DEBUG_sys ) ; then |
---|
| 1461 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1462 | fi |
---|
| 1463 | typeset dateF |
---|
| 1464 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1465 | eval ${2}=${dateF[5]} |
---|
| 1466 | |
---|
[622] | 1467 | # donne la date filesys d'un fichier sur la machine work |
---|
[623] | 1468 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[622] | 1469 | } |
---|
| 1470 | |
---|
| 1471 | #D-#================================================== |
---|
| 1472 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[623] | 1473 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[622] | 1474 | #D-* Examples: |
---|
| 1475 | #D- |
---|
| 1476 | function IGCM_sys_GetDate_FichArchive { |
---|
[623] | 1477 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1478 | if ( $DEBUG_sys ) ; then |
---|
| 1479 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1480 | fi |
---|
| 1481 | typeset dateF |
---|
| 1482 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1483 | eval ${2}=${dateF[5]} |
---|
| 1484 | |
---|
| 1485 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1486 | } |
---|
| 1487 | |
---|
| 1488 | #D-#================================================== |
---|
| 1489 | #D-function IGCM_sys_Dods_Rm |
---|
| 1490 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1491 | #D-* Examples: |
---|
| 1492 | #D- |
---|
| 1493 | function IGCM_sys_Dods_Rm { |
---|
| 1494 | if ( $DEBUG_sys ) ; then |
---|
| 1495 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1496 | fi |
---|
| 1497 | typeset RET |
---|
| 1498 | RET=0 |
---|
| 1499 | if [ $DRYRUN = 0 ]; then |
---|
| 1500 | |
---|
| 1501 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1502 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1503 | # echo "Nothing has been done." |
---|
| 1504 | # return |
---|
| 1505 | # fi |
---|
| 1506 | |
---|
[649] | 1507 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[623] | 1508 | RET=$? |
---|
| 1509 | |
---|
| 1510 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1511 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1512 | # cat out_dods_rm |
---|
| 1513 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
| 1514 | # else |
---|
| 1515 | # rm out_dods_rm |
---|
| 1516 | # fi |
---|
| 1517 | |
---|
| 1518 | else |
---|
| 1519 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1520 | fi |
---|
| 1521 | return $RET |
---|
| 1522 | } |
---|
| 1523 | |
---|
| 1524 | #D-#================================================== |
---|
| 1525 | #D-function IGCM_sys_Dods_Cp |
---|
| 1526 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1527 | #D-* Examples: |
---|
| 1528 | #D- |
---|
| 1529 | function IGCM_sys_Dods_Cp { |
---|
| 1530 | if ( $DEBUG_sys ) ; then |
---|
| 1531 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1532 | fi |
---|
| 1533 | typeset RET |
---|
| 1534 | RET=0 |
---|
| 1535 | if [ $DRYRUN = 0 ]; then |
---|
| 1536 | |
---|
| 1537 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1538 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1539 | # echo "Nothing has been done." |
---|
| 1540 | # return |
---|
| 1541 | # fi |
---|
| 1542 | |
---|
[649] | 1543 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[623] | 1544 | RET=$? |
---|
| 1545 | |
---|
| 1546 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1547 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1548 | # cat out_dods_cp |
---|
| 1549 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1550 | # else |
---|
| 1551 | # rm out_dods_cp |
---|
| 1552 | # fi |
---|
| 1553 | |
---|
| 1554 | else |
---|
| 1555 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1556 | fi |
---|
| 1557 | return $RET |
---|
| 1558 | } |
---|
| 1559 | |
---|
| 1560 | #D-#================================================== |
---|
| 1561 | #D-function IGCM_sys_Put_Dods |
---|
| 1562 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1563 | #D-* Examples: |
---|
| 1564 | #D- |
---|
| 1565 | function IGCM_sys_Put_Dods { |
---|
| 1566 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1567 | if ( $DEBUG_sys ) ; then |
---|
| 1568 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1569 | fi |
---|
| 1570 | set -vx |
---|
| 1571 | typeset RET |
---|
| 1572 | if [ $DRYRUN = 0 ]; then |
---|
| 1573 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1574 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1575 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1576 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
| 1577 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1578 | return |
---|
[622] | 1579 | fi |
---|
[623] | 1580 | |
---|
| 1581 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1582 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1583 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1584 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1585 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1586 | return |
---|
| 1587 | fi |
---|
| 1588 | # |
---|
| 1589 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1590 | cd ${R_SAVE} |
---|
| 1591 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1592 | cd ${R_FIGR} |
---|
| 1593 | fi |
---|
| 1594 | |
---|
| 1595 | IGCM_sys_Dods_Rm ${1} |
---|
| 1596 | IGCM_sys_Dods_Cp ${1} |
---|
| 1597 | RET=0 |
---|
| 1598 | |
---|
| 1599 | if [ ${RET} -gt 0 ] ; then |
---|
| 1600 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1601 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1602 | fi |
---|
| 1603 | else |
---|
| 1604 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1605 | fi |
---|
| 1606 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[622] | 1607 | } |
---|
| 1608 | |
---|
| 1609 | ############################################################## |
---|
| 1610 | # REBUILD OPERATOR |
---|
| 1611 | |
---|
| 1612 | function IGCM_sys_rebuild { |
---|
[623] | 1613 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1614 | if ( $DEBUG_sys ) ; then |
---|
| 1615 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1616 | fi |
---|
| 1617 | ~p86ipsl/CESIUM/bin/rebuild -f -o $@ |
---|
| 1618 | if [ $? -gt 0 ] ; then |
---|
| 1619 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1620 | IGCM_debug_Exit "rebuild" |
---|
| 1621 | fi |
---|
[622] | 1622 | |
---|
[623] | 1623 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[622] | 1624 | } |
---|
| 1625 | |
---|
| 1626 | ############################################################ |
---|
| 1627 | # Activate Running Environnment Variables |
---|
| 1628 | |
---|
| 1629 | function IGCM_sys_activ_variables { |
---|
[623] | 1630 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1631 | if ( $DEBUG_sys ) ; then |
---|
| 1632 | echo "IGCM_sys_activ_variables" |
---|
| 1633 | fi |
---|
[622] | 1634 | |
---|
[623] | 1635 | ulimit -s unlimited |
---|
[622] | 1636 | |
---|
[623] | 1637 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[622] | 1638 | } |
---|
| 1639 | |
---|
| 1640 | ############################################################ |
---|
| 1641 | # Desactivate Running Environnment Variables |
---|
| 1642 | |
---|
| 1643 | function IGCM_sys_desactiv_variables { |
---|
[623] | 1644 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1645 | if ( $DEBUG_sys ) ; then |
---|
| 1646 | echo "IGCM_sys_desactiv_variables" |
---|
| 1647 | fi |
---|
| 1648 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[622] | 1649 | } |
---|
| 1650 | |
---|
[623] | 1651 | ############################################################ |
---|
| 1652 | # Build MPI/OMP scripts run file (dummy function) |
---|
[622] | 1653 | |
---|
| 1654 | function IGCM_sys_build_run_file { |
---|
| 1655 | |
---|
[623] | 1656 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[622] | 1657 | |
---|
| 1658 | } |
---|
| 1659 | |
---|
| 1660 | ############################################################ |
---|
| 1661 | # Build MPI/OMP scripts |
---|
[623] | 1662 | function IGCM_sys_build_execution_scripts |
---|
[622] | 1663 | { |
---|
[623] | 1664 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1665 | if ( $DEBUG_sys ) ; then |
---|
| 1666 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1667 | fi |
---|
[622] | 1668 | |
---|
| 1669 | # Verification with MSUB parameter |
---|
[623] | 1670 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
[622] | 1671 | |
---|
[623] | 1672 | if ( ${OK_PARA_MPMD} ) ; then |
---|
[622] | 1673 | |
---|
[623] | 1674 | if [ -f run_file ] ; then |
---|
| 1675 | IGCM_sys_Rm -f run_file |
---|
| 1676 | fi |
---|
| 1677 | touch run_file |
---|
[622] | 1678 | |
---|
| 1679 | # run_file construction |
---|
| 1680 | |
---|
| 1681 | # Then first loop on the components for the coupler ie oasis |
---|
| 1682 | |
---|
| 1683 | ### the coupler ie oasis must be the first one |
---|
| 1684 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1685 | |
---|
[623] | 1686 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1687 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 1688 | |
---|
| 1689 | # for CPL component only |
---|
[623] | 1690 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[622] | 1691 | |
---|
[623] | 1692 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1693 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1694 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 1695 | fi |
---|
[622] | 1696 | done |
---|
| 1697 | |
---|
| 1698 | # Then second loop on the components |
---|
| 1699 | |
---|
| 1700 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1701 | |
---|
[623] | 1702 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1703 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 1704 | |
---|
| 1705 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
[623] | 1706 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
[622] | 1707 | |
---|
[623] | 1708 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1709 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1710 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 1711 | fi |
---|
[622] | 1712 | done |
---|
| 1713 | |
---|
| 1714 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
| 1715 | |
---|
| 1716 | IGCM_sys_Chmod u+x run_file |
---|
| 1717 | if ( $DEBUG_sys ) ; then |
---|
| 1718 | echo "run_file contains : " |
---|
| 1719 | cat run_file |
---|
| 1720 | fi |
---|
| 1721 | |
---|
[623] | 1722 | else # Only one executable. launch it. |
---|
[622] | 1723 | |
---|
[623] | 1724 | # |
---|
[622] | 1725 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1726 | |
---|
[623] | 1727 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1728 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 1729 | |
---|
[664] | 1730 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[623] | 1731 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1732 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1733 | EXECUTION="${EXECUTION} -n ${comp_proc_mpi_loc} ./${ExeNameOut}" |
---|
| 1734 | else |
---|
| 1735 | EXECUTION="${EXECUTION} ./${ExeNameOut}" |
---|
[622] | 1736 | fi |
---|
[623] | 1737 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1738 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1739 | EXECUTION="export OMP_NUM_THREADS=${comp_proc_omp_loc} ; ${EXECUTION} " |
---|
| 1740 | fi |
---|
| 1741 | fi |
---|
[622] | 1742 | |
---|
| 1743 | done |
---|
| 1744 | |
---|
[623] | 1745 | fi |
---|
[622] | 1746 | |
---|
[623] | 1747 | IGCM_debug_Print 1 "sys Curie : execution command is " |
---|
| 1748 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[622] | 1749 | |
---|
[623] | 1750 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[622] | 1751 | } |
---|
| 1752 | |
---|
| 1753 | ############################################################## |
---|
| 1754 | # NCO OPERATOR |
---|
| 1755 | |
---|
[623] | 1756 | function IGCM_sys_ncap2 { |
---|
| 1757 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1758 | if ( $DEBUG_sys ) ; then |
---|
| 1759 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1760 | fi |
---|
| 1761 | ncap2 "$@" |
---|
| 1762 | if [ $? -gt 0 ] ; then |
---|
| 1763 | echo "IGCM_sys_ncap2 : erreur ${@}." |
---|
| 1764 | IGCM_debug_Exit "ncap2" |
---|
| 1765 | fi |
---|
| 1766 | |
---|
| 1767 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 1768 | } |
---|
| 1769 | |
---|
[622] | 1770 | function IGCM_sys_ncatted { |
---|
[623] | 1771 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1772 | if ( $DEBUG_sys ) ; then |
---|
| 1773 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1774 | fi |
---|
| 1775 | ncatted "$@" |
---|
| 1776 | if [ $? -gt 0 ] ; then |
---|
| 1777 | echo "IGCM_sys_ncatted : erreur ${@}." |
---|
| 1778 | IGCM_debug_Exit "ncatted" |
---|
| 1779 | fi |
---|
[622] | 1780 | |
---|
[623] | 1781 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[622] | 1782 | } |
---|
| 1783 | |
---|
| 1784 | function IGCM_sys_ncbo { |
---|
[623] | 1785 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1786 | if ( $DEBUG_sys ) ; then |
---|
| 1787 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1788 | fi |
---|
| 1789 | ncbo $@ |
---|
| 1790 | if [ $? -gt 0 ] ; then |
---|
| 1791 | echo "IGCM_sys_ncbo : erreur ${@}." |
---|
| 1792 | IGCM_debug_Exit "ncbo" |
---|
| 1793 | fi |
---|
[622] | 1794 | |
---|
[623] | 1795 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[622] | 1796 | } |
---|
| 1797 | |
---|
| 1798 | function IGCM_sys_ncdiff { |
---|
[623] | 1799 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1800 | if ( $DEBUG_sys ) ; then |
---|
| 1801 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1802 | fi |
---|
| 1803 | ncdiff $@ |
---|
| 1804 | if [ $? -gt 0 ] ; then |
---|
| 1805 | echo "IGCM_sys_ncdiff : erreur ${@}." |
---|
| 1806 | IGCM_debug_Exit "ncdiff" |
---|
| 1807 | fi |
---|
[622] | 1808 | |
---|
[623] | 1809 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[622] | 1810 | } |
---|
| 1811 | |
---|
| 1812 | function IGCM_sys_ncea { |
---|
[623] | 1813 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 1814 | if ( $DEBUG_sys ) ; then |
---|
| 1815 | echo "IGCM_sys_ncea :" $@ |
---|
| 1816 | fi |
---|
| 1817 | ncea $@ |
---|
| 1818 | if [ $? -gt 0 ] ; then |
---|
| 1819 | echo "IGCM_sys_ncea : erreur ${@}." |
---|
| 1820 | IGCM_debug_Exit "ncea" |
---|
| 1821 | fi |
---|
[622] | 1822 | |
---|
[623] | 1823 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[622] | 1824 | } |
---|
| 1825 | |
---|
| 1826 | function IGCM_sys_ncecat { |
---|
[623] | 1827 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 1828 | if ( $DEBUG_sys ) ; then |
---|
| 1829 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1830 | fi |
---|
| 1831 | ncecat $@ |
---|
| 1832 | if [ $? -gt 0 ] ; then |
---|
| 1833 | echo "IGCM_sys_ncecat : erreur ${@}." |
---|
| 1834 | IGCM_debug_Exit "ncecat" |
---|
| 1835 | fi |
---|
[622] | 1836 | |
---|
[623] | 1837 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[622] | 1838 | } |
---|
| 1839 | |
---|
| 1840 | function IGCM_sys_ncflint { |
---|
[623] | 1841 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 1842 | if ( $DEBUG_sys ) ; then |
---|
| 1843 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1844 | fi |
---|
| 1845 | ncflint $@ |
---|
| 1846 | if [ $? -gt 0 ] ; then |
---|
| 1847 | echo "IGCM_sys_ncflint : erreur ${@}." |
---|
| 1848 | IGCM_debug_Exit "ncflint" |
---|
| 1849 | fi |
---|
[622] | 1850 | |
---|
[623] | 1851 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[622] | 1852 | } |
---|
| 1853 | |
---|
| 1854 | function IGCM_sys_ncks { |
---|
[623] | 1855 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 1856 | if ( $DEBUG_sys ) ; then |
---|
| 1857 | echo "IGCM_sys_ncks :" $@ |
---|
| 1858 | fi |
---|
| 1859 | ncks $@ |
---|
| 1860 | if [ $? -gt 0 ] ; then |
---|
| 1861 | echo "IGCM_sys_ncks : erreur ${@}." |
---|
| 1862 | IGCM_debug_Exit "ncks" |
---|
| 1863 | fi |
---|
[622] | 1864 | |
---|
[623] | 1865 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[622] | 1866 | } |
---|
| 1867 | |
---|
| 1868 | function IGCM_sys_ncpdq { |
---|
[623] | 1869 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 1870 | if ( $DEBUG_sys ) ; then |
---|
| 1871 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 1872 | fi |
---|
| 1873 | ncpdq $@ |
---|
| 1874 | if [ $? -gt 0 ] ; then |
---|
| 1875 | echo "IGCM_sys_ncpdq : erreur ${@}." |
---|
| 1876 | IGCM_debug_Exit "ncpdq" |
---|
| 1877 | fi |
---|
[622] | 1878 | |
---|
[623] | 1879 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[622] | 1880 | } |
---|
| 1881 | |
---|
| 1882 | function IGCM_sys_ncra { |
---|
[623] | 1883 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 1884 | if ( $DEBUG_sys ) ; then |
---|
| 1885 | echo "IGCM_sys_ncra :" $@ |
---|
| 1886 | fi |
---|
| 1887 | ncra $@ |
---|
| 1888 | if [ $? -gt 0 ] ; then |
---|
| 1889 | echo "IGCM_sys_ncra : erreur ${@}." |
---|
| 1890 | IGCM_debug_Exit "ncra" |
---|
| 1891 | fi |
---|
[622] | 1892 | |
---|
[623] | 1893 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[622] | 1894 | } |
---|
| 1895 | |
---|
| 1896 | function IGCM_sys_ncrcat { |
---|
[623] | 1897 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 1898 | if ( $DEBUG_sys ) ; then |
---|
| 1899 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 1900 | fi |
---|
| 1901 | ncrcat $@ |
---|
| 1902 | if [ $? -gt 0 ] ; then |
---|
| 1903 | echo "IGCM_sys_ncrcat : erreur ${@}." |
---|
[622] | 1904 | # IGCM_debug_Exit "ncrcat" |
---|
[623] | 1905 | fi |
---|
[622] | 1906 | |
---|
[623] | 1907 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[622] | 1908 | } |
---|
| 1909 | |
---|
| 1910 | function IGCM_sys_ncrename { |
---|
[623] | 1911 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 1912 | if ( $DEBUG_sys ) ; then |
---|
| 1913 | echo "IGCM_sys_ncrename :" $@ |
---|
| 1914 | fi |
---|
| 1915 | ncrename $@ |
---|
| 1916 | if [ $? -gt 0 ] ; then |
---|
| 1917 | echo "IGCM_sys_ncrename : erreur ${@}." |
---|
| 1918 | IGCM_debug_Exit "ncrename" |
---|
| 1919 | fi |
---|
[622] | 1920 | |
---|
[623] | 1921 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[622] | 1922 | } |
---|
| 1923 | |
---|
| 1924 | function IGCM_sys_ncwa { |
---|
[623] | 1925 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 1926 | if ( $DEBUG_sys ) ; then |
---|
| 1927 | echo "IGCM_sys_ncwa :" $@ |
---|
| 1928 | fi |
---|
| 1929 | ncwa $@ |
---|
| 1930 | if [ $? -gt 0 ] ; then |
---|
| 1931 | echo "IGCM_sys_ncwa : erreur ${@}." |
---|
| 1932 | IGCM_debug_Exit "ncwa" |
---|
| 1933 | fi |
---|
[622] | 1934 | |
---|
[623] | 1935 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[622] | 1936 | } |
---|
[623] | 1937 | |
---|
| 1938 | ############################################################## |
---|
| 1939 | # CDO OPERATOR |
---|
| 1940 | |
---|
| 1941 | function IGCM_sys_cdo { |
---|
| 1942 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 1943 | if ( $DEBUG_sys ) ; then |
---|
| 1944 | echo "IGCM_sys_cdo :" $@ |
---|
| 1945 | fi |
---|
| 1946 | \cdo $@ |
---|
| 1947 | if [ $? -gt 0 ] ; then |
---|
| 1948 | echo "IGCM_sys_cdo : erreur ${@}." |
---|
| 1949 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1950 | return 1 |
---|
| 1951 | else |
---|
| 1952 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1953 | return 0 |
---|
| 1954 | fi |
---|
| 1955 | |
---|
| 1956 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1957 | } |
---|
[651] | 1958 | |
---|
| 1959 | ############################################################ |
---|
| 1960 | # Check of space available on temporary filesytems |
---|
| 1961 | function IGCM_sys_check_quota { |
---|
| 1962 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1963 | if ( $DEBUG_sys ) ; then |
---|
| 1964 | echo "IGCM_sys_check_quota" |
---|
| 1965 | fi |
---|
| 1966 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1967 | } |
---|
| 1968 | |
---|