[771] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sébastien Denvil |
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| 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Ada |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[771] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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[1179] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[771] | 67 | # $username ou whoami |
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[1179] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[771] | 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=ada |
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| 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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| 77 | # Submit command |
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| 78 | typeset SUBMIT=${SUBMIT:=llsubmit} |
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| 79 | # rsync with path |
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| 80 | typeset -r RSYNC=/usr/bin/rsync |
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| 81 | # RSYNC_opt args to rsync |
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| 82 | typeset -r RSYNC_opt="-va" |
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| 83 | # ie storage filesystem |
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[1012] | 84 | typeset -r STOREHOST=ergon |
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[1180] | 85 | typeset -r REMOTE_RSYNC=/usr/bin/rsync |
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[771] | 86 | |
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| 87 | #==================================================== |
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[1180] | 88 | # Set environment tools (ferret, nco, cdo, rebuild, ...) |
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[771] | 89 | #==================================================== |
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[993] | 90 | source /smplocal/pub/Modules/default/init/ksh |
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[996] | 91 | . /smphome/rech/psl/rpsl035/.atlas_env_ada_bash > /dev/null 2>&1 |
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[993] | 92 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddNoise/src_X64_ADA/bin |
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[1026] | 93 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddPerturbation/src_X64_ADA/bin |
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[1179] | 94 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/bin/ |
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[771] | 95 | |
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| 96 | #==================================================== |
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| 97 | # Host specific DIRECTORIES |
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| 98 | #==================================================== |
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| 99 | |
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| 100 | #==================================================== |
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| 101 | #- MirrorlibIGCM for frontend |
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| 102 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 103 | |
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| 104 | #==================================================== |
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| 105 | #- libIGCM_POST for frontend |
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| 106 | typeset -r libIGCM_POST=${libIGCM} |
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| 107 | |
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| 108 | #==================================================== |
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| 109 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 110 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 111 | |
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| 112 | #==================================================== |
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| 113 | #- SUBMIT_DIR : submission dir |
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[1012] | 114 | typeset -x SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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[771] | 115 | |
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| 116 | #==================================================== |
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| 117 | #- IN |
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| 118 | typeset -r R_IN=${R_IN:=/workgpfs/rech/psl/rpsl035/IGCM} |
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| 119 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/u/rech/psl/rpsl376} |
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| 120 | |
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| 121 | #==================================================== |
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| 122 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 123 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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| 124 | |
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| 125 | #==================================================== |
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[1179] | 126 | #- OUTCOMMAND_PATH : tmp place to store command lines standard error and outputs |
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[1186] | 127 | typeset -r OUTCOMMAND_PATH=${RUN_DIR_PATH:-/tmp} |
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[1179] | 128 | |
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| 129 | #==================================================== |
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[771] | 130 | #- HOST_MPIRUN_COMMAND |
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[791] | 131 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time poe"} |
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[771] | 132 | |
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| 133 | #==================================================== |
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| 134 | #- Max number of arguments passed to nco operator or demigration command |
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| 135 | UNIX_MAX_LIMIT=360 |
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| 136 | |
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| 137 | #==================================================== |
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[1180] | 138 | #- set PackDefault to true on ada |
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[771] | 139 | PackDefault=true |
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| 140 | |
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| 141 | #==================================================== |
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| 142 | #- Number of core per node (max number of OpenMP task) |
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| 143 | NUM_COREPERNODE=8 |
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| 144 | |
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| 145 | #==================================================== |
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| 146 | #- Default number of MPI task for IPSL coupled model |
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| 147 | #- required for backward compatibility |
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| 148 | #- |
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| 149 | DEFAULT_NUM_PROC_OCE=5 |
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| 150 | DEFAULT_NUM_PROC_CPL=1 |
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| 151 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 152 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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| 153 | |
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| 154 | #D-#================================================== |
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[1057] | 155 | #D-function IGCM_sys_defineArchives |
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| 156 | #D-* Purpose: |
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| 157 | #D-* Define ARCHIVE : Dedicated to large files |
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| 158 | #D-* Define STORAGE : Dedicated to small/medium files |
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| 159 | #D-* Define R_OUT : Output tree located on ARCHIVE |
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| 160 | #D-* Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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| 161 | #D-* Define R_BUF : Output tree located on SCRATCHDIR hosting files waiting for rebuild or pack processes |
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| 162 | #D-* if SpaceName=TEST everything is stored on WORKDIR |
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[771] | 163 | #D-* Examples: |
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| 164 | #D- |
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[1057] | 165 | function IGCM_sys_defineArchives { |
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| 166 | IGCM_debug_PushStack "IGCM_sys_defineArchives" |
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[771] | 167 | |
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[1060] | 168 | if [ ! X${config_UserChoices_ARCHIVE} = X ]; then |
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[1057] | 169 | #==================================================== |
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| 170 | #- ARCHIVE (dedicated to large files) |
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[1063] | 171 | ARCHIVE=${config_UserChoices_ARCHIVE} |
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[1057] | 172 | else |
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| 173 | #==================================================== |
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| 174 | #- ARCHIVE (dedicated to large files) |
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[1063] | 175 | ARCHIVE=$(echo ${HOME} | sed -e "s,/.*home/,/arch/home/,") |
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[1057] | 176 | fi |
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[771] | 177 | |
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[1060] | 178 | if [ ! X${config_UserChoices_STORAGE} = X ]; then |
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[1057] | 179 | #==================================================== |
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| 180 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 181 | STORAGE=${config_UserChoices_STORAGE} |
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[1057] | 182 | else |
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| 183 | #==================================================== |
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| 184 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 185 | STORAGE=${WORKDIR} |
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[1057] | 186 | fi |
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[771] | 187 | |
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[1057] | 188 | if [ X${config_UserChoices_SpaceName} = XTEST ]; then |
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| 189 | #==================================================== |
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| 190 | #- R_OUT |
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[1063] | 191 | R_OUT=${WORKDIR}/IGCM_OUT |
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[1057] | 192 | |
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| 193 | #==================================================== |
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| 194 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 195 | R_FIG=${WORKDIR}/IGCM_OUT |
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[1057] | 196 | |
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| 197 | IGCM_debug_Print 1 "SpaceName=TEST ==> OVERRULE destination path directories" |
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| 198 | |
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| 199 | else |
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| 200 | #==================================================== |
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| 201 | #- R_OUT |
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[1063] | 202 | R_OUT=${ARCHIVE}/IGCM_OUT |
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[1057] | 203 | |
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| 204 | #==================================================== |
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| 205 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 206 | R_FIG=${ARCHIVE}/IGCM_OUT |
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[1057] | 207 | fi |
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| 208 | |
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| 209 | #==================================================== |
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| 210 | #- R_BUF (ONLY FOR double copy an scratch) |
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[1063] | 211 | R_BUF=${WORKDIR}/IGCM_OUT |
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[1057] | 212 | |
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| 213 | IGCM_debug_Print 1 "R_OUT has been defined = ${R_OUT}" |
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| 214 | IGCM_debug_Print 1 "R_BUF has been defined = ${R_BUF}" |
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| 215 | IGCM_debug_Print 1 "R_FIG has been defined = ${R_FIG}" |
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| 216 | |
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| 217 | IGCM_debug_PopStack "IGCM_sys_defineArchives" |
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[771] | 218 | } |
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| 219 | |
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| 220 | #D-#================================================== |
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| 221 | #D-function IGCM_sys_RshArchive |
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| 222 | #D-* Purpose: Archive rsh command |
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| 223 | #D-* Examples: |
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| 224 | #D- |
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| 225 | function IGCM_sys_RshArchive { |
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| 226 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[798] | 227 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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[1179] | 228 | if [ $? = 0 ] ; then |
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[798] | 229 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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[771] | 230 | ${@} |
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| 231 | EOF |
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[798] | 232 | status=$? |
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| 233 | else |
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| 234 | /bin/ksh <<-EOF |
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| 235 | ${@} |
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| 236 | EOF |
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| 237 | status=$? |
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| 238 | fi |
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| 239 | if [ ${status} -gt 0 ] ; then |
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| 240 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : rsh or command failed error code ${status}" |
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[771] | 241 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 242 | fi |
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| 243 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 244 | } |
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| 245 | |
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| 246 | #D-#================================================== |
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[845] | 247 | #D-function IGCM_sys_RshArchive_NoError |
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| 248 | #D-* Purpose: Archive rsh command, without error |
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| 249 | #D-* used only in monitoring.job |
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| 250 | #D-* Examples: |
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| 251 | #D- |
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| 252 | function IGCM_sys_RshArchive_NoError { |
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| 253 | IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@ |
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| 254 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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| 255 | if [ $? = 0 ] ; then |
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| 256 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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| 257 | ${@} 2> /dev/null |
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| 258 | EOF |
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| 259 | else |
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| 260 | /bin/ksh <<-EOF |
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| 261 | ${@} 2> /dev/null |
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| 262 | EOF |
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| 263 | fi |
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| 264 | IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError" |
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| 265 | } |
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| 266 | |
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| 267 | #D-#================================================== |
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[771] | 268 | #D-function IGCM_sys_MkdirArchive |
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| 269 | #D-* Purpose: Mkdir on Archive |
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| 270 | #D-* Examples: |
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| 271 | #D- |
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| 272 | function IGCM_sys_MkdirArchive { |
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| 273 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 274 | if ( $DEBUG_sys ) ; then |
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| 275 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 276 | fi |
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| 277 | #- creation de repertoire sur le serveur fichier |
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[798] | 278 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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[793] | 279 | if [ $? = 0 ] ; then |
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| 280 | rsh ${STOREHOST} -n mkdir -p $1 |
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[794] | 281 | status=$? |
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[793] | 282 | else |
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| 283 | mkdir -p $1 |
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[794] | 284 | status=$? |
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[922] | 285 | fi |
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[771] | 286 | |
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[794] | 287 | if [ ${status} -gt 0 ] ; then |
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| 288 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : rsh or mkdir failed error code ${status}" |
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[771] | 289 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 290 | fi |
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| 291 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 292 | } |
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| 293 | |
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| 294 | #D-#================================================== |
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| 295 | #D-function IGCM_sys_TestDirArchive |
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| 296 | #D-* Purpose: Test Directory that must exists on Archive |
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| 297 | #D-* Examples: |
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| 298 | #D- |
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| 299 | function IGCM_sys_TestDirArchive { |
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| 300 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 301 | if ( $DEBUG_sys ) ; then |
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| 302 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 303 | fi |
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[1027] | 304 | typeset ExistFlag |
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[796] | 305 | #Command depends on targeted file system |
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[798] | 306 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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[796] | 307 | if [ $? = 0 ] ; then |
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[1027] | 308 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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[796] | 309 | else |
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[1027] | 310 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[796] | 311 | fi |
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[771] | 312 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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| 313 | return ${ExistFlag} |
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| 314 | } |
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| 315 | |
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| 316 | #D-#================================================== |
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| 317 | #D-function IGCM_sys_IsFileArchived |
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[1012] | 318 | #D-* Purpose: Test file that must NOT EXISTS on Archive based on filename only |
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[771] | 319 | #D-* Examples: |
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| 320 | #D- |
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| 321 | function IGCM_sys_IsFileArchived { |
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| 322 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 323 | if ( $DEBUG_sys ) ; then |
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| 324 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 325 | fi |
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| 326 | typeset IsArchivedFlag |
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[1171] | 327 | IsArchivedFlag=$( [ "X$( echo $@ | grep \/arch\/home )" != "X" ] && echo 0 || echo 1 ) |
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[771] | 328 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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| 329 | |
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| 330 | return ${IsArchivedFlag} |
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| 331 | } |
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| 332 | |
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| 333 | #D-#================================================== |
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| 334 | #D-function IGCM_sys_TestFileArchive |
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| 335 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 336 | #D-* Examples: |
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| 337 | #D- |
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[1148] | 338 | function IGCM_sys_TestFileArchive { |
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| 339 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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[1179] | 340 | typeset ExistFlag |
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[1171] | 341 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
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[1148] | 342 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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| 343 | |
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| 344 | return ${ExistFlag} |
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| 345 | } |
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| 346 | |
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| 347 | #D-#================================================== |
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[1179] | 348 | #D-function IGCM_sys_CountFileArchive |
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| 349 | #D-* Purpose: Count files on Archive filesystem |
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| 350 | #D-* Examples: |
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| 351 | #D- |
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[1148] | 352 | function IGCM_sys_CountFileArchive { |
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| 353 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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| 354 | #Command depends on targeted file system |
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| 355 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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| 356 | if [ $? = 0 ] ; then |
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| 357 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
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| 358 | status=$? |
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| 359 | else |
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| 360 | ls ${@} 2>/dev/null | wc -l |
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| 361 | status=$? |
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| 362 | fi |
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| 363 | if [ ${status} -gt 0 ] ; then |
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| 364 | echo "IGCM_sys_CountFileArchive : erreur." |
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| 365 | fi |
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| 366 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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| 367 | } |
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| 368 | |
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| 369 | #D-#================================================== |
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[771] | 370 | #D-function IGCM_sys_Tree |
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| 371 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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| 372 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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| 373 | #D- |
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| 374 | function IGCM_sys_Tree { |
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| 375 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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| 376 | if ( $DEBUG_sys ) ; then |
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| 377 | echo "IGCM_sys_Tree :" $@ |
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| 378 | fi |
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| 379 | |
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[1032] | 380 | \mfls -R $@ |
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[771] | 381 | |
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| 382 | IGCM_debug_PopStack "IGCM_sys_Tree" |
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| 383 | } |
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| 384 | |
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| 385 | #D-#================================================== |
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| 386 | #D-function IGCM_sys_Qsub |
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| 387 | #D-* Purpose: Qsub new job |
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| 388 | #D-* Examples: |
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| 389 | #D- |
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| 390 | function IGCM_sys_Qsub { |
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| 391 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
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| 392 | if ( $DEBUG_sys ) ; then |
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| 393 | echo "IGCM_sys_Qsub :" $@ |
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| 394 | fi |
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[1179] | 395 | typeset status |
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| 396 | |
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[771] | 397 | # We have to change output/error file |
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| 398 | [ ${#@} = 1 ] && REP_FOR_JOB=${SUBMIT_DIR} |
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| 399 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
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[774] | 400 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Output}:" \ |
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| 401 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Output}:" \ |
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| 402 | $1 > ${REP_FOR_JOB}/JOB_FOR_IGCM |
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[1179] | 403 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
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[771] | 404 | |
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[1179] | 405 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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[811] | 406 | if [ ${status} -gt 0 ] ; then |
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| 407 | IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}" |
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[771] | 408 | IGCM_debug_Exit "IGCM_sys_Qsub" |
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| 409 | else |
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[1179] | 410 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
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[771] | 411 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
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| 412 | fi |
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| 413 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
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| 414 | } |
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| 415 | |
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| 416 | #D-#================================================== |
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| 417 | #D-function IGCM_sys_QsubPost |
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| 418 | #D-* Purpose: Qsub new job on scalaire |
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| 419 | #D-* Examples: |
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| 420 | #D- |
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| 421 | function IGCM_sys_QsubPost { |
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| 422 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
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| 423 | if ( $DEBUG_sys ) ; then |
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| 424 | echo "IGCM_sys_QsubPost :" $@ |
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| 425 | fi |
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[1179] | 426 | typeset status |
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| 427 | |
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[771] | 428 | # We have to change output/error file |
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[784] | 429 | [ ${#@} = 1 ] && REP_FOR_JOB=${POST_DIR} |
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[771] | 430 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
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| 431 | |
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[784] | 432 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Post_Output}.out:" \ |
---|
| 433 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Post_Output}.out:" \ |
---|
[887] | 434 | ${libIGCM_POST}/$1.job > ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
[774] | 435 | |
---|
[1179] | 436 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM_$$ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
---|
[948] | 437 | |
---|
[1179] | 438 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[811] | 439 | if [ ${status} -gt 0 ] ; then |
---|
| 440 | IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}" |
---|
[771] | 441 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 442 | else |
---|
[1179] | 443 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
---|
[887] | 444 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
[771] | 445 | fi |
---|
| 446 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 447 | } |
---|
| 448 | |
---|
| 449 | #D-************************* |
---|
| 450 | #D- File transfer functions |
---|
| 451 | #D-************************* |
---|
| 452 | #D- |
---|
| 453 | |
---|
| 454 | #D-#================================================== |
---|
| 455 | #D-function IGCM_sys_RmRunDir |
---|
| 456 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 457 | #D- scheduler will do the job) |
---|
| 458 | #D-* Examples: |
---|
| 459 | #D- |
---|
| 460 | function IGCM_sys_RmRunDir { |
---|
[1057] | 461 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" $@ |
---|
[771] | 462 | if ( $DEBUG_sys ) ; then |
---|
| 463 | echo "IGCM_sys_RmRunDir :" $@ |
---|
[1183] | 464 | IGCM_debug_Print 1 "Dummy call, let the scheduler do that." |
---|
[771] | 465 | fi |
---|
| 466 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
| 467 | } |
---|
| 468 | |
---|
| 469 | #D-#================================================== |
---|
| 470 | #D-function IGCM_sys_Put_Dir |
---|
| 471 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 472 | #D-* Examples: |
---|
| 473 | #D- |
---|
| 474 | function IGCM_sys_Put_Dir { |
---|
| 475 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 476 | if ( $DEBUG_sys ) ; then |
---|
| 477 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 478 | fi |
---|
| 479 | if [ $DRYRUN = 0 ]; then |
---|
| 480 | if [ ! -d ${1} ] ; then |
---|
| 481 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 482 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 483 | return |
---|
| 484 | fi |
---|
| 485 | |
---|
| 486 | typeset status |
---|
| 487 | |
---|
| 488 | # Only if we use rsync |
---|
| 489 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 490 | # |
---|
[792] | 491 | #Command depends on targeted file system |
---|
[798] | 492 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 493 | if [ $? = 0 ] ; then |
---|
[1179] | 494 | \rcp -r $1 ${STOREHOST}:$2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 495 | status=$? |
---|
| 496 | else |
---|
[1179] | 497 | \cp -r $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 498 | status=$? |
---|
| 499 | fi |
---|
[771] | 500 | |
---|
| 501 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 502 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : rcp or cp failed error code ${status}" |
---|
[1179] | 503 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 504 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
| 505 | else |
---|
[1179] | 506 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 507 | fi |
---|
| 508 | fi |
---|
| 509 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 510 | } |
---|
| 511 | |
---|
| 512 | #D-#================================================== |
---|
| 513 | #D-function IGCM_sys_Get_Dir |
---|
| 514 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
| 515 | #D-* Examples: |
---|
| 516 | #D- |
---|
| 517 | function IGCM_sys_Get_Dir { |
---|
| 518 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 519 | if ( $DEBUG_sys ) ; then |
---|
| 520 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 521 | fi |
---|
| 522 | if [ $DRYRUN = 0 ]; then |
---|
| 523 | typeset NB_ESSAI DELAI status i |
---|
| 524 | # number of tentative |
---|
| 525 | NB_ESSAI=3 |
---|
| 526 | # time delay between tentative |
---|
| 527 | DELAI=2 |
---|
| 528 | |
---|
| 529 | # Only if we use rsync |
---|
| 530 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 531 | # |
---|
[793] | 532 | # Command depends on targeted filesystem |
---|
[798] | 533 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
[793] | 534 | if [ $? = 0 ] ; then |
---|
| 535 | # add dmget (to demigrate all offline files) to reduce time of this command : |
---|
[1012] | 536 | #IGCM_sys_RshArchive "dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget -q -n" |
---|
[793] | 537 | i=0 |
---|
| 538 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1179] | 539 | \rcp -rp ${STOREHOST}:$1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[793] | 540 | status=$? |
---|
| 541 | if [ ${status} -gt 0 ]; then |
---|
| 542 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : rcp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 543 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 544 | sleep $DELAI |
---|
| 545 | else |
---|
| 546 | break |
---|
| 547 | fi |
---|
| 548 | (( i = i + 1 )) |
---|
| 549 | done |
---|
| 550 | else |
---|
[1179] | 551 | \cp -rp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 552 | status=$? |
---|
[793] | 553 | if [ ${status} -gt 0 ] ; then |
---|
| 554 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
[1179] | 555 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[793] | 556 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[771] | 557 | else |
---|
[1179] | 558 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 559 | fi |
---|
[793] | 560 | fi |
---|
[771] | 561 | if [ ${status} -gt 0 ] ; then |
---|
[1179] | 562 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : (r)cp failed error code ${status}" |
---|
| 563 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 564 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
| 565 | else |
---|
[1179] | 566 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 567 | fi |
---|
| 568 | fi |
---|
| 569 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 570 | } |
---|
| 571 | |
---|
| 572 | #D-#================================================== |
---|
| 573 | #D-function IGCM_sys_Put_Rest |
---|
| 574 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
| 575 | #D- File and target directory must exist. |
---|
| 576 | #D-* Examples: |
---|
| 577 | #D- |
---|
| 578 | function IGCM_sys_Put_Rest { |
---|
| 579 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 580 | if ( $DEBUG_sys ) ; then |
---|
| 581 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 582 | fi |
---|
| 583 | if [ $DRYRUN = 0 ]; then |
---|
| 584 | if [ ! -f ${1} ] ; then |
---|
| 585 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 586 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 587 | fi |
---|
| 588 | |
---|
| 589 | typeset status |
---|
| 590 | # |
---|
| 591 | if [ X${JobType} = XRUN ] ; then |
---|
| 592 | IGCM_sys_Chmod 444 ${1} |
---|
| 593 | fi |
---|
| 594 | # |
---|
| 595 | # |
---|
[792] | 596 | #Command depends on targeted file system |
---|
[798] | 597 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 598 | if [ $? = 0 ] ; then |
---|
[1179] | 599 | mfput $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 600 | status=$? |
---|
| 601 | else |
---|
[795] | 602 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 603 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 604 | status=$? |
---|
| 605 | fi |
---|
[771] | 606 | |
---|
| 607 | # #RSYNC WITH NETWORK RSH CALL |
---|
[795] | 608 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 609 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 610 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 611 | |
---|
| 612 | # #RSYNC WITH NFS USE |
---|
[1179] | 613 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 614 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 615 | |
---|
| 616 | # status=$? |
---|
| 617 | # IGCM_sys_Rsync_out $status |
---|
| 618 | |
---|
[1179] | 619 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 620 | # (( status=status+$? )) |
---|
| 621 | |
---|
| 622 | if [ ${status} -gt 0 ] ; then |
---|
[1179] | 623 | IGCM_debug_Print 2 "IGCM_sys_Put_Rest : mfput or cp failed error code ${status}" |
---|
| 624 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 625 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 626 | else |
---|
[1179] | 627 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 628 | fi |
---|
| 629 | fi |
---|
| 630 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 631 | } |
---|
| 632 | |
---|
| 633 | #D-#================================================== |
---|
| 634 | #D-function IGCM_sys_Put_Out |
---|
| 635 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
| 636 | #D-* Examples: |
---|
| 637 | #D- |
---|
| 638 | function IGCM_sys_Put_Out { |
---|
| 639 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 640 | if ( $DEBUG_sys ) ; then |
---|
| 641 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 642 | fi |
---|
| 643 | |
---|
| 644 | typeset status |
---|
| 645 | |
---|
| 646 | if [ $DRYRUN = 0 ]; then |
---|
| 647 | if [ ! -f ${1} ] ; then |
---|
| 648 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 649 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 650 | return 1 |
---|
| 651 | fi |
---|
| 652 | # |
---|
| 653 | if [ X${JobType} = XRUN ] ; then |
---|
| 654 | if [ X${3} = X ] ; then |
---|
| 655 | IGCM_sys_Chmod 444 ${1} |
---|
| 656 | fi |
---|
| 657 | fi |
---|
| 658 | # |
---|
| 659 | # |
---|
[792] | 660 | #Command depends on targeted file system |
---|
[798] | 661 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 662 | if [ $? = 0 ] ; then |
---|
[1179] | 663 | mfput $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 664 | status=$? |
---|
| 665 | else |
---|
[795] | 666 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 667 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 668 | status=$? |
---|
| 669 | fi |
---|
[771] | 670 | |
---|
| 671 | # #RSYNC WITH NETWORK RSH CALL |
---|
[795] | 672 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 673 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 674 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 675 | |
---|
| 676 | # #RSYNC WITH NFS USE |
---|
[1179] | 677 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 678 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 679 | |
---|
| 680 | # status=$? |
---|
| 681 | # IGCM_sys_Rsync_out $status |
---|
| 682 | |
---|
[1179] | 683 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 684 | # (( status=status+$? )) |
---|
| 685 | |
---|
| 686 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 687 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : mfput or cp failed error code ${status}" |
---|
[1179] | 688 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 689 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 690 | else |
---|
[1179] | 691 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 692 | fi |
---|
| 693 | fi |
---|
| 694 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 695 | return 0 |
---|
| 696 | } |
---|
| 697 | |
---|
| 698 | #D-#================================================== |
---|
| 699 | #D-function IGCM_sys_Get |
---|
| 700 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 701 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 702 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 703 | function IGCM_sys_Get { |
---|
| 704 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 705 | |
---|
| 706 | typeset DEST status dm_liste |
---|
| 707 | |
---|
| 708 | if ( $DEBUG_sys ) ; then |
---|
| 709 | echo "IGCM_sys_Get :" $@ |
---|
| 710 | fi |
---|
| 711 | if [ $DRYRUN -le 2 ]; then |
---|
| 712 | if [ X${1} = X'/l' ] ; then |
---|
| 713 | eval set +A dm_liste \${${2}} |
---|
| 714 | else |
---|
| 715 | dm_liste=${1} |
---|
| 716 | fi |
---|
| 717 | eval DEST=\${${#}} |
---|
| 718 | |
---|
| 719 | # test if the (first) file is present in the old computation : |
---|
[798] | 720 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
[796] | 721 | if [ $? = 0 ] ; then |
---|
| 722 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 723 | status=$? |
---|
| 724 | else |
---|
[798] | 725 | IGCM_sys_TestFileBuffer ${dm_liste[0]} |
---|
[796] | 726 | status=$? |
---|
| 727 | fi |
---|
| 728 | |
---|
[771] | 729 | if [ ${status} -gt 0 ] ; then |
---|
| 730 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 731 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 732 | return |
---|
| 733 | fi |
---|
| 734 | |
---|
[792] | 735 | #Command depends on targeted file system |
---|
[798] | 736 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
[792] | 737 | if [ $? = 0 ] ; then |
---|
[1179] | 738 | mfget ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 739 | status=$? |
---|
| 740 | else |
---|
[1179] | 741 | \cp ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 742 | status=$? |
---|
| 743 | fi |
---|
[771] | 744 | |
---|
| 745 | # #RSYNC WITH NETWORK RSH CALL |
---|
[1179] | 746 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 747 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 748 | |
---|
| 749 | # #RSYNC WITH NFS USE |
---|
[1179] | 750 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 751 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 752 | |
---|
| 753 | # status=$? |
---|
| 754 | # IGCM_sys_Rsync_out $status |
---|
| 755 | |
---|
[1179] | 756 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 757 | # (( status=status+$? )) |
---|
| 758 | |
---|
| 759 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 760 | IGCM_debug_Print 2 "IGCM_sys_Get : mfget or cp failed error code ${status}" |
---|
[1179] | 761 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 762 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 763 | else |
---|
[1179] | 764 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 765 | fi |
---|
| 766 | fi |
---|
| 767 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 768 | } |
---|
| 769 | |
---|
| 770 | #D-#================================================== |
---|
[835] | 771 | #D-function IGCM_sys_GetDate_Monitoring |
---|
| 772 | #D-* Purpose: get the last year for which the monitoring has been computed |
---|
| 773 | #D-* Examples: |
---|
| 774 | #D- |
---|
| 775 | function IGCM_sys_GetDate_Monitoring { |
---|
| 776 | IGCM_debug_PushStack "IGCM_sys_GetDate_Monitoring" $@ |
---|
| 777 | if ( $DEBUG_sys ) ; then |
---|
| 778 | echo "IGCM_sys_GetDate_Monitoring :" $@ |
---|
| 779 | fi |
---|
| 780 | |
---|
| 781 | IGCM_sys_Cd /tmp |
---|
[1129] | 782 | # NASTY HACK. We force /tmp here. This function is called only from the front-end and interactively. |
---|
| 783 | RUN_DIR_PATH=/tmp IGCM_sys_Get ${1} . |
---|
[835] | 784 | eval ${2}=$( cdo showyear $( basename ${1} ) 2> /dev/null | gawk '{ print $NF }' ) |
---|
[1131] | 785 | # Need to erase this file to avoid collision (permission denied getting file) between users on the front-end |
---|
| 786 | IGCM_sys_Rm -f $( basename ${1} ) |
---|
[835] | 787 | IGCM_sys_Cd - |
---|
| 788 | |
---|
| 789 | IGCM_debug_PopStack "IGCM_sys_GetDate_Monitoring" |
---|
| 790 | } |
---|
| 791 | |
---|
| 792 | #D-#================================================== |
---|
[771] | 793 | #D-function IGCM_sys_Put_Dods |
---|
[1179] | 794 | #D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. |
---|
[771] | 795 | #D-* Examples: |
---|
| 796 | #D- |
---|
| 797 | function IGCM_sys_Put_Dods { |
---|
| 798 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 799 | if ( $DEBUG_sys ) ; then |
---|
| 800 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 801 | fi |
---|
[1179] | 802 | typeset status |
---|
[771] | 803 | if [ $DRYRUN = 0 ]; then |
---|
| 804 | # We take our time on that |
---|
| 805 | sleep 10 |
---|
| 806 | IGCM_sys_TestDirArchive ${R_SAVE}/${1} |
---|
| 807 | if [ $? != 0 ] ; then |
---|
| 808 | echo "WARNING : IGCM_sys_Put_Dods ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 809 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 810 | return |
---|
| 811 | fi |
---|
| 812 | |
---|
[1012] | 813 | rsh ${STOREHOST} exec /bin/ksh <<EOF |
---|
[771] | 814 | cd ${R_SAVE} |
---|
[1012] | 815 | /arch/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS}/${1} > /dev/null 2>&1 |
---|
[771] | 816 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
[1012] | 817 | /arch/local/bin/dods_cp ${1} DODS/pub/${LOGIN}/${R_DODS} > /dev/null 2>&1 |
---|
[771] | 818 | /bin/chmod -R +rX ${R_SAVE}/${1} |
---|
| 819 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
| 820 | EOF |
---|
| 821 | status=$? |
---|
| 822 | |
---|
| 823 | if [ ${status} -gt 0 ] ; then |
---|
| 824 | echo "IGCM_sys_Put_Dods : error." |
---|
| 825 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 826 | fi |
---|
| 827 | fi |
---|
| 828 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 829 | } |
---|
| 830 | |
---|
| 831 | ############################################################## |
---|
| 832 | # REBUILD OPERATOR |
---|
| 833 | |
---|
[811] | 834 | #D-#================================================== |
---|
[1163] | 835 | #D-function IGCM_sys_sync |
---|
| 836 | #D-* Purpose: flush buffer on disk (dummy function on Ada) |
---|
| 837 | #D-* Examples: |
---|
| 838 | #D- |
---|
| 839 | function IGCM_sys_sync { |
---|
| 840 | IGCM_debug_PushStack "IGCM_sys_sync" $@ |
---|
| 841 | if ( $DEBUG_sys ) ; then |
---|
| 842 | echo "IGCM_sys_sync :" $@ |
---|
| 843 | echo "Dummy call, let the system do that." |
---|
| 844 | fi |
---|
| 845 | IGCM_debug_PopStack "IGCM_sys_sync" |
---|
| 846 | } |
---|
| 847 | |
---|
[771] | 848 | ############################################################ |
---|
| 849 | # Activate Running Environnment Variables |
---|
| 850 | |
---|
[811] | 851 | #D-#================================================== |
---|
| 852 | #D-function IGCM_sys_desactiv_variables |
---|
| 853 | #D-* Purpose: set environement variables prior to execution |
---|
| 854 | #D-* Examples: |
---|
| 855 | #D- |
---|
[771] | 856 | function IGCM_sys_activ_variables { |
---|
| 857 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 858 | if ( $DEBUG_sys ) ; then |
---|
[811] | 859 | echo "IGCM_sys_activ_variables" |
---|
[771] | 860 | fi |
---|
| 861 | |
---|
[811] | 862 | # -------------------------------------------------------------------- |
---|
| 863 | #D- MPI specifications |
---|
| 864 | # -------------------------------------------------------------------- |
---|
| 865 | |
---|
| 866 | # -------------------------------------------------------------------- |
---|
| 867 | #D- Other specifications |
---|
| 868 | # -------------------------------------------------------------------- |
---|
| 869 | |
---|
[771] | 870 | ulimit -s unlimited |
---|
[1012] | 871 | ## to be done only one time |
---|
| 872 | ## export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
[1068] | 873 | ## echo ${LD_LIBRARY_PATH} | grep -i netcdf >/dev/null 2>&1 || export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
[1012] | 874 | IGCM_debug_Print 1 "set LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" |
---|
[771] | 875 | |
---|
[959] | 876 | export MP_STDOUTMODE=combined |
---|
| 877 | IGCM_debug_Print 1 "set MP_STDOUTMODE=${MP_STDOUTMODE}" |
---|
| 878 | |
---|
[1195] | 879 | ## fix to reduce memory usage. Required since 2014/22/04. On ada IDRIS. |
---|
| 880 | #export MP_EUILIBPATH=/smplocal/lib/ibmhpc/pe12012/ppe.pami/gnu/lib64/pami64 |
---|
| 881 | #IGCM_debug_Print 1 "set MP_EUILIBPATH=${MP_EUILIBPATH}" |
---|
[1004] | 882 | |
---|
[771] | 883 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 884 | } |
---|
| 885 | |
---|
| 886 | ############################################################ |
---|
| 887 | # Desactivate Running Environnment Variables |
---|
| 888 | |
---|
[811] | 889 | #D-#================================================== |
---|
| 890 | #D-function IGCM_sys_desactiv_variables |
---|
| 891 | #D-* Purpose: unset environement variables after execution |
---|
| 892 | #D-* Examples: |
---|
| 893 | #D- |
---|
[771] | 894 | function IGCM_sys_desactiv_variables { |
---|
| 895 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 896 | if ( $DEBUG_sys ) ; then |
---|
[811] | 897 | echo "IGCM_sys_desactiv_variables" |
---|
[771] | 898 | fi |
---|
| 899 | # -------------------------------------------------------------------- |
---|
| 900 | #D- MPI specifications |
---|
| 901 | # -------------------------------------------------------------------- |
---|
| 902 | |
---|
| 903 | # -------------------------------------------------------------------- |
---|
| 904 | #D- Other specifications |
---|
| 905 | # -------------------------------------------------------------------- |
---|
| 906 | |
---|
| 907 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 908 | } |
---|
| 909 | |
---|
| 910 | ############################################################ |
---|
| 911 | # Build MPI/OMP scripts run file (dummy function) |
---|
| 912 | |
---|
[811] | 913 | #D-#================================================== |
---|
| 914 | #D-function IGCM_sys_build_run_file |
---|
| 915 | #D-* Purpose: build run file (deprecated) |
---|
| 916 | #D-* Examples: |
---|
| 917 | #D- |
---|
[771] | 918 | function IGCM_sys_build_run_file { |
---|
| 919 | |
---|
[811] | 920 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[771] | 921 | |
---|
| 922 | } |
---|
| 923 | |
---|
| 924 | ############################################################ |
---|
| 925 | # Build MPI/OMP scripts |
---|
[811] | 926 | |
---|
| 927 | #D-#================================================== |
---|
| 928 | #D-function IGCM_sys_build_execution_scripts |
---|
| 929 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
| 930 | #D-* Examples: |
---|
| 931 | #D- |
---|
[771] | 932 | function IGCM_sys_build_execution_scripts |
---|
| 933 | { |
---|
| 934 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 935 | if ( $DEBUG_sys ) ; then |
---|
| 936 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 937 | fi |
---|
| 938 | |
---|
| 939 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
| 940 | |
---|
[1179] | 941 | # MPMD mode |
---|
[771] | 942 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 943 | |
---|
| 944 | if [ -f run_file ] ; then |
---|
| 945 | IGCM_sys_Rm -f run_file |
---|
| 946 | fi |
---|
| 947 | touch run_file |
---|
| 948 | |
---|
[1179] | 949 | # Build run_file |
---|
[771] | 950 | |
---|
[1179] | 951 | # First loop on the components for the coupler ie oasis (only if oasis3) |
---|
| 952 | # the coupler ie oasis3 must be the first one |
---|
[771] | 953 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 954 | |
---|
| 955 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 956 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 957 | |
---|
| 958 | # for CPL component only |
---|
| 959 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 960 | |
---|
| 961 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 962 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[777] | 963 | |
---|
| 964 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 965 | (( mpi_count = 1 )) |
---|
| 966 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 967 | echo "./${ExeNameOut}" >> run_file |
---|
| 968 | (( mpi_count = mpi_count + 1 )) |
---|
| 969 | done |
---|
| 970 | else |
---|
| 971 | echo "./${ExeNameOut} " >> run_file |
---|
| 972 | fi |
---|
[771] | 973 | fi |
---|
| 974 | done |
---|
| 975 | |
---|
[1179] | 976 | # Then second loop on the components |
---|
[771] | 977 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 978 | |
---|
| 979 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 980 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 981 | |
---|
| 982 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 983 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 984 | |
---|
| 985 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 986 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[777] | 987 | |
---|
| 988 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 989 | (( mpi_count = 1 )) |
---|
| 990 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
[1093] | 991 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 992 | # Check if the number of threads is correct |
---|
| 993 | case ${comp_proc_omp_loc} in |
---|
| 994 | 1|2) |
---|
| 995 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads" |
---|
| 996 | ;; |
---|
| 997 | 4|8|16) |
---|
| 998 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 999 | IGCM_debug_Print 2 "Beware : ${comp_proc_omp_loc} is too much for MPMD mode" |
---|
| 1000 | IGCM_debug_Print 2 "You will use more CPU than needed" |
---|
| 1001 | IGCM_debug_Verif_Exit |
---|
| 1002 | ;; |
---|
| 1003 | *) |
---|
| 1004 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1005 | IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads" |
---|
| 1006 | IGCM_debug_Print 2 "Only 2,4,8,16 as number of OMP threads are possible " |
---|
| 1007 | IGCM_debug_Verif_Exit |
---|
| 1008 | ;; |
---|
| 1009 | esac |
---|
| 1010 | echo "env OMP_NUM_THREADS=$comp_proc_omp_loc ./${ExeNameOut}" >> run_file |
---|
| 1011 | else |
---|
| 1012 | echo "./${ExeNameOut}" >> run_file |
---|
| 1013 | fi |
---|
| 1014 | (( mpi_count = mpi_count + 1 )) |
---|
[777] | 1015 | done |
---|
| 1016 | else |
---|
[1093] | 1017 | echo "./${ExeNameOut} " >> run_file |
---|
[777] | 1018 | fi |
---|
[1093] | 1019 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1020 | export KMP_STACKSIZE=200m |
---|
| 1021 | fi |
---|
[771] | 1022 | fi |
---|
| 1023 | done |
---|
| 1024 | |
---|
| 1025 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
| 1026 | |
---|
| 1027 | IGCM_sys_Chmod u+x run_file |
---|
| 1028 | if ( $DEBUG_sys ) ; then |
---|
| 1029 | echo "run_file contains : " |
---|
| 1030 | cat run_file |
---|
| 1031 | fi |
---|
| 1032 | |
---|
[1180] | 1033 | # Only one executable (SPMD mode). |
---|
| 1034 | else |
---|
[771] | 1035 | |
---|
| 1036 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1037 | |
---|
| 1038 | # Only if we really have an executable for the component : |
---|
| 1039 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1040 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[847] | 1041 | |
---|
| 1042 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1043 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[853] | 1044 | export KMP_STACKSIZE=200m |
---|
| 1045 | #export KMP_LIBRARY=turnaround |
---|
[847] | 1046 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1047 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1048 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1049 | fi |
---|
[790] | 1050 | EXECUTION="${HOST_MPIRUN_COMMAND} ./${ExeNameOut}" |
---|
[771] | 1051 | fi |
---|
| 1052 | |
---|
| 1053 | done |
---|
| 1054 | |
---|
| 1055 | fi |
---|
| 1056 | |
---|
| 1057 | IGCM_debug_Print 1 "sys ada : execution command is " |
---|
| 1058 | IGCM_debug_Print 1 "$EXECUTION" |
---|
| 1059 | |
---|
| 1060 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
| 1061 | } |
---|
| 1062 | |
---|
[933] | 1063 | #D-#================================================== |
---|
| 1064 | #D-function IGCM_sys_check_path |
---|
| 1065 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
| 1066 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
| 1067 | #D-* Examples: |
---|
| 1068 | #D- |
---|
| 1069 | function IGCM_sys_check_path { |
---|
| 1070 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
| 1071 | if ( $DEBUG_sys ) ; then |
---|
| 1072 | echo "IGCM_sys_check_path" |
---|
| 1073 | fi |
---|
[811] | 1074 | |
---|
[1012] | 1075 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${ARCHIVE} ] ) ; then |
---|
[933] | 1076 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
| 1077 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
[936] | 1078 | IGCM_debug_Exit "This will stop the job" |
---|
[933] | 1079 | fi |
---|
| 1080 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
| 1081 | } |
---|
| 1082 | |
---|
[811] | 1083 | #D-#================================================== |
---|
| 1084 | #D-function IGCM_sys_check_quota |
---|
| 1085 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
| 1086 | #D-* Examples: |
---|
| 1087 | #D- |
---|
[771] | 1088 | function IGCM_sys_check_quota { |
---|
| 1089 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1090 | if ( $DEBUG_sys ) ; then |
---|
[811] | 1091 | echo "IGCM_sys_check_quota" |
---|
[771] | 1092 | fi |
---|
| 1093 | # Limit of quota (in %) |
---|
| 1094 | limit_quota=90 |
---|
[811] | 1095 | |
---|
[771] | 1096 | # Check of the volume |
---|
[945] | 1097 | volume_quota=$(quota_u -w 2>/dev/null| grep 'Quota soft' | gawk '{print $5}') |
---|
[771] | 1098 | if [ ! X${volume_quota} = X ] ; then |
---|
| 1099 | quota_volume=${volume_quota%%\%} |
---|
| 1100 | # echo $quota_volume |
---|
[946] | 1101 | if [ $(echo "${quota_volume} > ${limit_quota}" | bc) -eq 1 ] ; then |
---|
[771] | 1102 | IGCM_debug_Print 1 "Please, check your quota of volume on workgpfs" |
---|
| 1103 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 1104 | IGCM_debug_Print 1 "Use the quota_u -w command to check" |
---|
| 1105 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 1106 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 1107 | IGCM_debug_Verif_Exit |
---|
| 1108 | fi |
---|
| 1109 | |
---|
| 1110 | fi |
---|
| 1111 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1112 | } |
---|
| 1113 | |
---|
| 1114 | #D-#================================================== |
---|
[958] | 1115 | #D-function IGCM_sys_GetJobID |
---|
| 1116 | #D-* Purpose: Check if job_name is currently |
---|
| 1117 | #D- running or in queue |
---|
[1179] | 1118 | #D-* Examples: IGCM_sys_GetJobID ${JobName} ${TargetUsr} JobID |
---|
[958] | 1119 | #D- |
---|
| 1120 | function IGCM_sys_GetJobID { |
---|
| 1121 | IGCM_debug_PushStack "IGCM_sys_GetJobID" |
---|
| 1122 | if ( $DEBUG_sys ) ; then |
---|
| 1123 | echo "IGCM_sys_GetJobID" |
---|
| 1124 | fi |
---|
| 1125 | |
---|
| 1126 | # Print only the full (-W) JobID (%id) and JobName (%jn) |
---|
| 1127 | ID=$( llq -u $2 -W -f %id %jn | \ |
---|
| 1128 | gawk -v JobName=$1 '( $NF ~ JobName ) { print $1 }' ) |
---|
| 1129 | |
---|
| 1130 | eval ${3}=${ID} |
---|
| 1131 | IGCM_debug_PopStack "IGCM_sys_GetJobID" |
---|
| 1132 | } |
---|
| 1133 | |
---|
| 1134 | #D-#================================================== |
---|
[771] | 1135 | #D-function IGCM_sys_CountJobInQueue |
---|
| 1136 | #D-* Purpose: Check if job_name is currently |
---|
| 1137 | #D- running or in queue |
---|
| 1138 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 1139 | #D- |
---|
| 1140 | function IGCM_sys_CountJobInQueue { |
---|
| 1141 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 1142 | if ( $DEBUG_sys ) ; then |
---|
| 1143 | echo "IGCM_sys_CountJobInQueue" |
---|
| 1144 | fi |
---|
| 1145 | |
---|
| 1146 | # Print only the full (-W) JobName (%jn) |
---|
| 1147 | NbRun=$( llq -W -f %jn | grep -c "$1" ) |
---|
| 1148 | |
---|
| 1149 | eval ${2}=${NbRun} |
---|
| 1150 | |
---|
| 1151 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 1152 | } |
---|
| 1153 | |
---|
[955] | 1154 | #D-#================================================== |
---|
| 1155 | #D-function IGCM_sys_ListJobInQueue |
---|
| 1156 | #D-* Purpose: Check if job_name is currently |
---|
| 1157 | #D- running or in queue |
---|
| 1158 | #D-* Examples: IGCM_sys_ListJobInQueue ${User} JobNameList |
---|
| 1159 | #D- |
---|
| 1160 | function IGCM_sys_ListJobInQueue { |
---|
| 1161 | IGCM_debug_PushStack "IGCM_sys_ListJobInQueue" |
---|
| 1162 | if ( $DEBUG_sys ) ; then |
---|
| 1163 | echo "IGCM_sys_ListJobInQueue" |
---|
| 1164 | fi |
---|
| 1165 | |
---|
[960] | 1166 | # With -W option, column width is as large as necessary |
---|
| 1167 | set -A JobList $( llq -u $1 -W -f %jn | head -n -2 | tail -n +3 | \ |
---|
| 1168 | gawk '( $1 != /TS/ && \ |
---|
| 1169 | $1 !~ /PACK/ && \ |
---|
| 1170 | $1 !~ /REBUILD/ && \ |
---|
| 1171 | $1 !~ /pack/ ) \ |
---|
| 1172 | { print $1 }' | sed -e "s/\(.*\)\.[0-9]*/\1/" ) |
---|
[955] | 1173 | |
---|
| 1174 | eval set -A ${2} ${JobList[*]} |
---|
| 1175 | |
---|
| 1176 | IGCM_debug_PopStack "IGCM_sys_ListJobInQueue" |
---|
| 1177 | } |
---|