1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Martial Mancip |
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5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | |
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14 | # bypass specific internationalization (for gawk) |
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15 | export LC_ALL="C" |
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16 | |
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17 | # By default, all libIGCM_sys save functions will protect output datas (RUN execution mode) |
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18 | # other values : DEB(ug), DEV(elopment). |
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19 | JobType=${JobType:=RUN} |
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20 | |
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21 | #==================================================== |
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22 | # set PackDefault false by default |
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23 | PackDefault=false |
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24 | |
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25 | #==================================================== |
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26 | # set BigBrother false by default |
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27 | BigBrother=${BigBrother:=false} |
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28 | |
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29 | #==================================================== |
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30 | # set BigBrother channel (AMQP or MAIL) |
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31 | # only MAIL working at present due to firewall constraint |
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32 | BigBrotherChannel=MAIL |
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33 | |
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34 | # no need to be so verbose in checking mode |
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35 | if [ ! X${TaskType} = Xchecking ] ; then |
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36 | echo |
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37 | echo "====================================================" |
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38 | echo "Where do we run ?" $( hostname ) |
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39 | uname -a |
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40 | echo "====================================================" |
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41 | echo |
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42 | fi |
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43 | |
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44 | if [ X${JobType} = XDEB ] ; then |
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45 | echo "DEBUG mode : activation of 'set -vx' mode." |
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46 | set -vx |
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47 | DEBUG_debug=true |
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48 | DEBUG_sys=true |
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49 | fi |
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50 | |
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51 | #==================================================== |
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52 | |
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53 | case $( hostname -s ) in |
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54 | ada*) |
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55 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ada Intel X-64." |
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56 | CENTER=IDRIS |
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57 | SYSTEM=ada |
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58 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ada.ksh;; |
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59 | curie*) |
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60 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for curie Intel X-64." |
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61 | CENTER=TGCC |
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62 | SYSTEM=curie |
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63 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh;; |
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64 | irene*) |
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65 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for irene Intel X-64 at TGCC" |
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66 | CENTER=TGCC |
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67 | SYSTEM=irene |
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68 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_irene.ksh;; |
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69 | airain*) |
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70 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for airain Intel X-64." |
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71 | CENTER=TGCC |
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72 | SYSTEM=curie |
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73 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh;; |
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74 | asterix*|obelix*) |
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75 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for obelix or asterix." |
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76 | CENTER=LSCE |
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77 | SYSTEM=lxiv8 |
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78 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_obelix.ksh;; |
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79 | ciclad*) |
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80 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ciclad for running at ciclad." |
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81 | CENTER=IPSL-ciclad |
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82 | SYSTEM=ifort_CICLAD |
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83 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ciclad.ksh;; |
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84 | camelot*|loholt1*|loholt2*|merlin*) |
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85 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ciclad for running at climserv." |
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86 | CENTER=IPSL-climserv |
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87 | SYSTEM=ifort_CICLAD |
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88 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ciclad.ksh;; |
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89 | iitm*) |
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90 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for iitm." |
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91 | CENTER=IITM |
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92 | SYSTEM=iitm |
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93 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_iitm.ksh;; |
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94 | *) |
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95 | if [ "${SLURM_CLUSTER_NAME}" = "jean-zay" ] || [ "$( hostname -s | cut -c "1-8" )" = "jean-zay" ] ; then |
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96 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for Jean-Zay Intel X-64." |
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97 | CENTER=IDRIS |
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98 | SYSTEM=jeanzay |
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99 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_jeanzay.ksh |
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100 | else |
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101 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for a default machine." |
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102 | CENTER=DEFAULT |
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103 | SYSTEM=default |
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104 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_default.ksh |
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105 | fi;; |
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106 | esac |
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107 | # Set default umask (umask is 0027 on some machines : CCRT machine at least) |
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108 | umask 0022 |
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109 | |
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110 | #D--------------------------------------------------------------------== |
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111 | #D- |
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112 | #D- Define IGCM_sys functions that are common on every systems |
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113 | #D- |
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114 | #D--------------------------------------------------------------------== |
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115 | |
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116 | #D-#================================================== |
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117 | #D-function IGCM_sys_RshMaster |
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118 | #D-* Purpose: Connection to frontend machine. |
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119 | #D-* Examples: |
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120 | #D- |
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121 | function IGCM_sys_RshMaster { |
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122 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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123 | OUTCOMMAND_PATH=${OUTCOMMAND_PATH} /bin/ksh <<-EOF |
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124 | export libIGCM=${libIGCM} |
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125 | export DEBUG_debug=${DEBUG_debug} |
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126 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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127 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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128 | ${@} |
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129 | EOF |
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130 | if [ $? -gt 0 ] ; then |
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131 | echo "IGCM_sys_RshMaster : erreur." |
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132 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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133 | fi |
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134 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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135 | } |
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136 | |
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137 | #D-#================================================== |
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138 | #D-function IGCM_sys_RshPost |
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139 | #D-* Purpose: Post-process rsh command |
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140 | #D-* Examples: |
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141 | #D- |
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142 | function IGCM_sys_RshPost { |
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143 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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144 | if ( $DEBUG_sys ) ; then |
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145 | echo "IGCM_sys_RshPost :" $@ |
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146 | fi |
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147 | # keep standard input (stdin) for the loop onto temporary file |
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148 | cat >${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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149 | |
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150 | OUTCOMMAND_PATH=${OUTCOMMAND_PATH} /bin/ksh <${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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151 | if [ $? -gt 0 ] ; then |
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152 | echo "IGCM_sys_RshPost : erreur." |
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153 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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154 | fi |
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155 | # delete temporary file |
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156 | \rm ${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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157 | |
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158 | # ============ FRONTEND END ============ # |
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159 | |
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160 | # ============ CESIUM START ============ # |
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161 | # typeset NB_ESSAI DELAI status i |
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162 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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163 | # #little hack so that rebuild submission is done on titane not an cesium |
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164 | # |
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165 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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166 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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167 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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168 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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169 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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170 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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171 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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172 | # |
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173 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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174 | # cat tmp_IGCM_sys_RshPost_$$ |
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175 | # |
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176 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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177 | # if [ $? -gt 0 ] ; then |
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178 | # echo "IGCM_sys_RshPost : erreur." |
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179 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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180 | # fi |
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181 | # # delete temporary file |
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182 | # \rm tmp_IGCM_sys_RshPost_$$ |
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183 | # |
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184 | # else |
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185 | # # number of tentative |
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186 | # NB_ESSAI=10 |
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187 | # # time delay between tentative |
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188 | # DELAI=10 |
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189 | # i=0 |
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190 | # while [ $i -ne $NB_ESSAI ] ; do |
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191 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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192 | # status=$? |
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193 | # if [ ${status} -ne 0 ]; |
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194 | # then |
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195 | # sleep $DELAI |
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196 | # else |
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197 | # break |
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198 | # fi |
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199 | # let i=$i+1 |
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200 | # done |
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201 | # # delete temporary file |
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202 | # \rm tmp_IGCM_sys_RshPost_$$ |
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203 | # |
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204 | # if [ ${status} -gt 0 ] ; then |
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205 | # echo "IGCM_sys_RshPost : erreur." |
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206 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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207 | # fi |
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208 | # fi |
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209 | |
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210 | # ============ CESIUM END ============ # |
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211 | |
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212 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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213 | } |
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214 | |
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215 | #D-#================================================== |
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216 | #D-function IGCM_sys_SendMail |
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217 | #D-* Purpose: Send mail when simulation is over |
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218 | #D-* Examples: |
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219 | #D- |
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220 | function IGCM_sys_SendMail { |
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221 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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222 | if ( $DEBUG_sys ) ; then |
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223 | echo "IGCM_sys_SendMail :" $@ |
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224 | fi |
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225 | |
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226 | if [ X${1} = XAccounting ] ; then |
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227 | status=Accounting |
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228 | mailText=jobAccounting.mail |
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229 | elif ( ${ExitFlag} ) ; then |
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230 | status=failed |
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231 | mailText=jobEnd.mail |
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232 | else |
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233 | status=completed |
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234 | mailText=jobEnd.mail |
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235 | fi |
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236 | |
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237 | # Update selected mail template |
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238 | while read -r line; do |
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239 | eval echo $line >> mail.txt ; |
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240 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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241 | |
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242 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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243 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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244 | elif [ -f ~/.forward ] ; then |
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245 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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246 | else |
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247 | mail -s "${config_UserChoices_JobName} ${status}" ${USER} < mail.txt |
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248 | fi |
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249 | |
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250 | sleep 10 |
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251 | rm -f mail.txt |
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252 | |
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253 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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254 | } |
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255 | |
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256 | #D-#================================================== |
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257 | #D-function IGCM_sys_Mkdir |
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258 | #D-* Purpose: Master locale mkdir command |
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259 | #D-* Examples: |
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260 | #D- |
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261 | function IGCM_sys_Mkdir { |
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262 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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263 | if ( $DEBUG_sys ) ; then |
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264 | echo "IGCM_sys_Mkdir :" $@ |
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265 | fi |
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266 | if [ ! -d ${1} ]; then |
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267 | \mkdir -p $1 |
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268 | if [ $? -gt 0 ] ; then |
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269 | echo "IGCM_sys_Mkdir : erreur." |
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270 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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271 | fi |
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272 | fi |
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273 | # vérification : |
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274 | if [ ! -d ${1} ] ; then |
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275 | echo "IGCM_sys_Mkdir : erreur." |
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276 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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277 | fi |
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278 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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279 | } |
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280 | |
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281 | #D-#================================================== |
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282 | #D-function IGCM_sys_MkdirWork |
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283 | #D-* Purpose: Mkdir on Work |
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284 | #D-* Examples: |
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285 | #D- |
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286 | function IGCM_sys_MkdirWork { |
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287 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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288 | if ( $DEBUG_sys ) ; then |
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289 | echo "IGCM_sys_MkdirWork :" $@ |
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290 | fi |
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291 | #- creation de repertoire sur le serveur fichier |
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292 | if [ ! -d ${1} ]; then |
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293 | \mkdir -p $1 |
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294 | if [ $? -gt 0 ] ; then |
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295 | echo "IGCM_sys_MkdirWork : erreur." |
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296 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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297 | fi |
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298 | fi |
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299 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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300 | } |
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301 | |
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302 | #D-#================================================== |
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303 | #D-function IGCM_sys_Cd |
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304 | #D-* Purpose: master cd command |
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305 | #D-* Examples: |
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306 | #D- |
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307 | function IGCM_sys_Cd { |
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308 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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309 | if ( $DEBUG_sys ) ; then |
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310 | echo "IGCM_sys_Cd :" $@ |
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311 | fi |
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312 | \cd $1 |
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313 | if [ $? -gt 0 ] ; then |
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314 | echo "IGCM_sys_Cd : erreur." |
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315 | IGCM_debug_Exit "IGCM_sys_Cd" |
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316 | fi |
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317 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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318 | } |
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319 | |
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320 | #D-#================================================== |
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321 | #D-function IGCM_sys_Chmod |
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322 | #D-* Purpose: Chmod |
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323 | #D-* Examples: |
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324 | #D- |
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325 | function IGCM_sys_Chmod { |
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326 | IGCM_debug_PushStack "IGCM_sys_Chmod" $@ |
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327 | if ( $DEBUG_sys ) ; then |
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328 | echo "IGCM_sys_Chmod :" $@ |
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329 | fi |
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330 | \chmod $@ |
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331 | if [ $? -gt 0 ] ; then |
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332 | echo "IGCM_sys_Chmod : erreur." |
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333 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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334 | fi |
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335 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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336 | } |
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337 | |
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338 | #D-#================================================== |
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339 | #D-function IGCM_sys_FileSize |
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340 | #D-* Purpose: Filesize |
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341 | #D-* Examples: |
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342 | #D- |
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343 | function IGCM_sys_FileSize { |
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344 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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345 | |
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346 | typeset sizeF |
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347 | set +A sizeF -- $( ls -la ${1} ) |
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348 | if [ $? -gt 0 ] ; then |
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349 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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350 | fi |
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351 | eval ${2}=${sizeF[4]} |
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352 | |
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353 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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354 | } |
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355 | |
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356 | #D-#================================================== |
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357 | #D-function IGCM_sys_TestDir |
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358 | #D-* Purpose: Test Directory that must exists |
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359 | #D-* Examples: |
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360 | #D- |
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361 | function IGCM_sys_TestDir { |
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362 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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363 | if ( $DEBUG_sys ) ; then |
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364 | echo "IGCM_sys_TestDir :" $@ |
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365 | fi |
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366 | typeset ExistFlag |
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367 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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368 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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369 | |
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370 | return ${ExistFlag} |
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371 | } |
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372 | |
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373 | #D-#================================================== |
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374 | #D-function IGCM_sys_TestFileBuffer |
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375 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
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376 | #D-* Examples: |
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377 | #D- |
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378 | function IGCM_sys_TestFileBuffer { |
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379 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
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380 | typeset ExistFlag |
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381 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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382 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
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383 | |
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384 | return ${ExistFlag} |
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385 | } |
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386 | |
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387 | #D-#================================================== |
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388 | #D-function IGCM_sys_CountFileBuffer |
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389 | #D-* Purpose: Count files on Scratch filesystem |
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390 | #D-* Examples: |
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391 | #D- |
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392 | function IGCM_sys_CountFileBuffer { |
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393 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
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394 | ls ${@} 2>/dev/null | wc -l |
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395 | if [ $? -gt 0 ] ; then |
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396 | echo "IGCM_sys_CountFileBuffer : erreur." |
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397 | fi |
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398 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
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399 | } |
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400 | |
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401 | #D-#================================================== |
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402 | #D-function IGCM_sys_Tar |
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403 | #D-* Purpose: master tar command |
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404 | #D-* Examples: |
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405 | #D- |
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406 | function IGCM_sys_Tar { |
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407 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
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408 | if ( $DEBUG_sys ) ; then |
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409 | echo "IGCM_sys_Tar :" $@ |
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410 | fi |
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411 | \tar cf $@ |
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412 | if [ $? -gt 0 ] ; then |
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413 | echo "IGCM_sys_Tar : erreur." |
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414 | IGCM_debug_Exit "IGCM_sys_Tar" |
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415 | fi |
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416 | IGCM_debug_PopStack "IGCM_sys_Tar" |
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417 | } |
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418 | |
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419 | #D-#================================================== |
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420 | #D-function IGCM_sys_UnTar |
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421 | #D-* Purpose: master un-tar command |
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422 | #D-* Examples: |
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423 | #D- |
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424 | function IGCM_sys_UnTar { |
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425 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
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426 | if ( $DEBUG_sys ) ; then |
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427 | echo "IGCM_sys_UnTar :" $@ |
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428 | fi |
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429 | \tar xvf $1 |
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430 | if [ $? -gt 0 ] ; then |
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431 | echo "IGCM_sys_UnTar : erreur." |
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432 | IGCM_debug_Exit "IGCM_sys_UnTar" |
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433 | fi |
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434 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
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435 | } |
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436 | |
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437 | #D-************************* |
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438 | #D- File transfer functions |
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439 | #D-************************* |
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440 | #D- |
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441 | |
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442 | #D-#================================================== |
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443 | #D-function IGCM_sys_Rsync_out |
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444 | #D-* Purpose: treat return val of rsync |
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445 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
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446 | #D- Error values and explanations can depend on your system version. |
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447 | function IGCM_sys_Rsync_out { |
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448 | IGCM_debug_PushStack "IGCM_sys_Rsync_out" $@ |
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449 | if ( $DEBUG_sys ) ; then |
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450 | echo "IGCM_sys_UnTar :" $@ |
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451 | fi |
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452 | |
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453 | typeset status |
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454 | status=$1 |
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455 | |
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456 | if [ ! $status ] ; then |
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457 | IGCM_debug_Print 1 "IGCM_sys_Rsync_out need an argument" |
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458 | IGCM_debug_PopStack "IGCM_sys_Rsync_out" |
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459 | return |
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460 | fi |
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461 | |
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462 | case $status in |
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463 | 0) ;; |
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464 | 1) IGCM_debug_Print 1 "rsync error RERR_SYNTAX : Syntax or usage error";; |
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465 | 2) IGCM_debug_Print 1 "rsync error RERR_PROTOCOL : Protocol incompatibility";; |
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466 | 3) IGCM_debug_Print 1 "rsync error RERR_FILESELECT : Errors selecting input/output files, dirs";; |
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467 | 4) IGCM_debug_Print 1 "rsync error RERR_UNSUPPORTED : Requested action not supported." |
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468 | IGCM_debug_Print 1 "An attempt was made to manipulate 64-bit files on a platform that cannot support them" |
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469 | IGCM_debug_Print 1 "Or an option was specified that is supported by the client and not by the server.";; |
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470 | 5) IGCM_debug_Print 1 "rsync error : Error starting client-server protocol";; |
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471 | 10) IGCM_debug_Print 1 "rsync error RERR_SOCKETIO : Error in socket I/O";; |
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472 | 11) IGCM_debug_Print 1 "rsync error RERR_FILEIO: Error in file I/O";; |
---|
473 | 12) IGCM_debug_Print 1 "rsync error RERR_STREAMIO : Error in rsync protocol data stream";; |
---|
474 | 13) IGCM_debug_Print 1 "rsync error RERR_MESSAGEIO : Errors with program diagnostics";; |
---|
475 | 14) IGCM_debug_Print 1 "rsync error RERR_IPC : Error in IPC code";; |
---|
476 | 20) IGCM_debug_Print 1 "rsync error RERR_SIGNAL : Received SIGUSR1 or SIGINT";; |
---|
477 | 21) IGCM_debug_Print 1 "rsync error RERR_WAITCHILD : Some error returned by waitpid()";; |
---|
478 | 22) IGCM_debug_Print 1 "rsync error RERR_MALLOC : Error allocating core memory buffers";; |
---|
479 | 23) IGCM_debug_Print 1 "rsync error : Partial transfer due to error";; |
---|
480 | 24) IGCM_debug_Print 1 "rsync error : Partial transfer due to vanished source files";; |
---|
481 | 30) IGCM_debug_Print 1 "rsync error : Timeout in data send/receive";; |
---|
482 | *) IGCM_debug_Print 1 "rsync error : return code of rsync unknown :" $status;; |
---|
483 | esac |
---|
484 | |
---|
485 | IGCM_debug_PopStack "IGCM_sys_Rsync_out" |
---|
486 | } |
---|
487 | |
---|
488 | #D-#================================================== |
---|
489 | #D-function IGCM_sys_Miror_libIGCM |
---|
490 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
491 | #D-* Examples: |
---|
492 | #D- |
---|
493 | function IGCM_sys_Mirror_libIGCM { |
---|
494 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
495 | if ( $DEBUG_sys ) ; then |
---|
496 | echo "IGCM_sys_Mirror_libIGCM" |
---|
497 | fi |
---|
498 | |
---|
499 | typeset status |
---|
500 | |
---|
501 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
502 | |
---|
503 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
504 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
505 | status=$? |
---|
506 | |
---|
507 | if [ ${status} -gt 0 ] ; then |
---|
508 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
509 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
510 | fi |
---|
511 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
512 | } |
---|
513 | |
---|
514 | #D-#================================================== |
---|
515 | #D-function IGCM_sys_Cp |
---|
516 | #D-* Purpose: generic cp |
---|
517 | #D-* Examples: |
---|
518 | #D- |
---|
519 | function IGCM_sys_Cp { |
---|
520 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
521 | if ( $DEBUG_sys ) ; then |
---|
522 | echo "IGCM_sys_Cp :" $@ |
---|
523 | fi |
---|
524 | |
---|
525 | typeset status |
---|
526 | |
---|
527 | echo cp $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
528 | \cp $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
529 | status=$? |
---|
530 | |
---|
531 | if [ ${status} -gt 0 ] ; then |
---|
532 | echo "IGCM_sys_Cp : error code ${status}" |
---|
533 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
534 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
535 | else |
---|
536 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
537 | fi |
---|
538 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
539 | } |
---|
540 | |
---|
541 | #D-#================================================== |
---|
542 | #D-function IGCM_sys_Rm |
---|
543 | #D-* Purpose: generic rm |
---|
544 | #D-* Examples: |
---|
545 | #D- |
---|
546 | function IGCM_sys_Rm { |
---|
547 | IGCM_debug_PushStack "IGCM_sys_Rm" $@ |
---|
548 | if ( $DEBUG_sys ) ; then |
---|
549 | echo "IGCM_sys_Rm :" $@ |
---|
550 | fi |
---|
551 | |
---|
552 | typeset status |
---|
553 | |
---|
554 | echo rm $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
555 | \rm $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
556 | status=$? |
---|
557 | |
---|
558 | if [ ${status} -gt 0 ] ; then |
---|
559 | echo "IGCM_sys_Rm : error code ${status}" |
---|
560 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
561 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
562 | else |
---|
563 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
564 | fi |
---|
565 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
566 | } |
---|
567 | |
---|
568 | #D-#================================================== |
---|
569 | #D-function IGCM_sys_Mv |
---|
570 | #D-* Purpose: generic move |
---|
571 | #D-* Examples: |
---|
572 | #D- |
---|
573 | function IGCM_sys_Mv { |
---|
574 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
575 | if ( $DEBUG_sys ) ; then |
---|
576 | echo "IGCM_sys_Mv :" $@ |
---|
577 | fi |
---|
578 | |
---|
579 | if [ $DRYRUN = 0 ]; then |
---|
580 | |
---|
581 | typeset status |
---|
582 | |
---|
583 | echo mv $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
584 | \mv $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
585 | status=$? |
---|
586 | |
---|
587 | if [ ${status} -gt 0 ] ; then |
---|
588 | echo "IGCM_sys_Mv : error code ${status}" |
---|
589 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
590 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
591 | else |
---|
592 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
593 | fi |
---|
594 | fi |
---|
595 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
596 | } |
---|
597 | |
---|
598 | #D-#================================================== |
---|
599 | #D-function IGCM_sys_Get_Master |
---|
600 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
601 | #D-* Examples: |
---|
602 | #D- |
---|
603 | function IGCM_sys_Get_Master { |
---|
604 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
605 | if ( $DEBUG_sys ) ; then |
---|
606 | echo "IGCM_sys_Get_Master :" $@ |
---|
607 | fi |
---|
608 | if [ $DRYRUN = 0 ]; then |
---|
609 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
610 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
611 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
612 | return |
---|
613 | fi |
---|
614 | |
---|
615 | typeset NB_ESSAI DELAI status i |
---|
616 | # number of tentative |
---|
617 | NB_ESSAI=3 |
---|
618 | # time delay between tentative |
---|
619 | DELAI=2 |
---|
620 | |
---|
621 | i=0 |
---|
622 | while [ $i -lt $NB_ESSAI ] ; do |
---|
623 | \cp -urL $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
624 | status=$? |
---|
625 | if [ ${status} -gt 0 ]; then |
---|
626 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
627 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
628 | sleep $DELAI |
---|
629 | else |
---|
630 | break |
---|
631 | fi |
---|
632 | (( i = i + 1 )) |
---|
633 | done |
---|
634 | |
---|
635 | if [ ${status} -gt 0 ] ; then |
---|
636 | echo "IGCM_sys_Get_Master : error." |
---|
637 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
638 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
639 | else |
---|
640 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
641 | fi |
---|
642 | fi |
---|
643 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
644 | } |
---|
645 | |
---|
646 | #==================================================== |
---|
647 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
648 | if ( $MirrorlibIGCM ) ; then |
---|
649 | IGCM_sys_Mirror_libIGCM |
---|
650 | fi |
---|
651 | |
---|
652 | #D-#================================================== |
---|
653 | #D-function IGCM_sys_PutBuffer_Rest |
---|
654 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
655 | #D- File and target directory must exist. |
---|
656 | #D-* Examples: |
---|
657 | #D- |
---|
658 | function IGCM_sys_PutBuffer_Rest { |
---|
659 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
660 | if ( $DEBUG_sys ) ; then |
---|
661 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
662 | fi |
---|
663 | if [ $DRYRUN = 0 ]; then |
---|
664 | if [ ! -f ${1} ] ; then |
---|
665 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
666 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
667 | fi |
---|
668 | |
---|
669 | typeset status |
---|
670 | # |
---|
671 | # USUAL WAY |
---|
672 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
673 | status=$? |
---|
674 | |
---|
675 | if [ ${status} -gt 0 ] ; then |
---|
676 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
677 | [ -f ${2} ] && ls -l ${2} |
---|
678 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
679 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
680 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
681 | else |
---|
682 | |
---|
683 | if [ X${JobType} = XRUN ] ; then |
---|
684 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
685 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
686 | fi |
---|
687 | |
---|
688 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
689 | fi |
---|
690 | fi |
---|
691 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
692 | } |
---|
693 | |
---|
694 | #D-#================================================== |
---|
695 | #D-function IGCM_sys_PrepareTaredRestart |
---|
696 | #D-* Purpose: Prepare tared restart to be access by computing job. |
---|
697 | #D-* Examples: |
---|
698 | #D- |
---|
699 | function IGCM_sys_PrepareTaredRestart { |
---|
700 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
701 | if [ $DRYRUN = 0 ]; then |
---|
702 | [ ! -f $( basename $1 ) ] && IGCM_sys_Get $1 . |
---|
703 | fi |
---|
704 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
705 | } |
---|
706 | |
---|
707 | #D-#================================================== |
---|
708 | #D-function IGCM_sys_PutBuffer_Out |
---|
709 | #D-* Purpose: Copy a file on the buffer filesystem after having chmod it in readonly |
---|
710 | #D-* Examples: |
---|
711 | #D- |
---|
712 | function IGCM_sys_PutBuffer_Out { |
---|
713 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
714 | if ( $DEBUG_sys ) ; then |
---|
715 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
716 | fi |
---|
717 | |
---|
718 | typeset NB_ESSAI DELAI status i exist skip |
---|
719 | typeset fileDeviceNumberInHex directoryDeviceNumberInHex |
---|
720 | |
---|
721 | # number of tentative |
---|
722 | NB_ESSAI=3 |
---|
723 | # time delay between tentative |
---|
724 | DELAI=2 |
---|
725 | |
---|
726 | if [ $DRYRUN = 0 ]; then |
---|
727 | if [ ! -f ${1} ] ; then |
---|
728 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
729 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
730 | return 1 |
---|
731 | fi |
---|
732 | # |
---|
733 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
734 | # |
---|
735 | |
---|
736 | exist=false |
---|
737 | skip=false |
---|
738 | if [ -f $2 ] ; then |
---|
739 | IGCM_debug_Print 1 "$2 already exist" |
---|
740 | exist=true |
---|
741 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
742 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
743 | status=0 |
---|
744 | skip=true |
---|
745 | else |
---|
746 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
747 | skip=false |
---|
748 | fi |
---|
749 | fi |
---|
750 | # |
---|
751 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
752 | IGCM_sys_Chmod u+w $2 |
---|
753 | fi |
---|
754 | |
---|
755 | if [ X${skip} = Xfalse ] ; then |
---|
756 | i=0 |
---|
757 | while [ $i -lt $NB_ESSAI ] ; do |
---|
758 | # Identify file system |
---|
759 | fileDeviceNumberInHex=$( stat -c %d $1 ) |
---|
760 | status=$? |
---|
761 | if [ ${status} -gt 0 ] ; then |
---|
762 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
763 | fi |
---|
764 | # Identify file system |
---|
765 | directoryDeviceNumberInHex=$( stat -c %d $( dirname $2 ) ) |
---|
766 | status=$? |
---|
767 | if [ ${status} -gt 0 ] ; then |
---|
768 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
769 | fi |
---|
770 | |
---|
771 | if [ ${fileDeviceNumberInHex} -ne ${directoryDeviceNumberInHex} ] ; then |
---|
772 | # They are not on the same device. USUAL WAY |
---|
773 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
774 | status=$? |
---|
775 | else |
---|
776 | # They are on the same device. USUAL WAY |
---|
777 | \mv $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
778 | status=$? |
---|
779 | fi |
---|
780 | if [ ${status} -gt 0 ]; then |
---|
781 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
782 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
783 | [ -f ${2} ] && ls -l ${2} |
---|
784 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
785 | sleep $DELAI |
---|
786 | else |
---|
787 | break |
---|
788 | fi |
---|
789 | (( i = i + 1 )) |
---|
790 | done |
---|
791 | fi |
---|
792 | |
---|
793 | if [ ${status} -gt 0 ] ; then |
---|
794 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
795 | [ -f ${2} ] && ls -l ${2} |
---|
796 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
797 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
798 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
799 | else |
---|
800 | |
---|
801 | if [ X${JobType} = XRUN ] ; then |
---|
802 | if [ X${3} = X ] ; then |
---|
803 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
804 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
805 | fi |
---|
806 | fi |
---|
807 | |
---|
808 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
809 | fi |
---|
810 | fi |
---|
811 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
812 | return 0 |
---|
813 | } |
---|
814 | |
---|
815 | #D-#================================================== |
---|
816 | #D-function IGCM_sys_GetBuffer |
---|
817 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
818 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
819 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
820 | function IGCM_sys_GetBuffer { |
---|
821 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
822 | |
---|
823 | typeset DEST buf_liste target file_work |
---|
824 | typeset NB_ESSAI DELAI status i |
---|
825 | |
---|
826 | if ( $DEBUG_sys ) ; then |
---|
827 | echo "IGCM_sys_GetBuffer :" $@ |
---|
828 | fi |
---|
829 | |
---|
830 | # number of tentative |
---|
831 | NB_ESSAI=3 |
---|
832 | # time delay between tentative |
---|
833 | DELAI=2 |
---|
834 | |
---|
835 | if [ $DRYRUN -le 2 ]; then |
---|
836 | if [ X${1} = X'/l' ] ; then |
---|
837 | eval set +A buf_liste \${${2}} |
---|
838 | else |
---|
839 | eval set +A buf_liste ${1} |
---|
840 | fi |
---|
841 | eval DEST=\${${#}} |
---|
842 | |
---|
843 | #USUAL WAY |
---|
844 | if [ X${1} = X'/l' ] ; then |
---|
845 | for target in ${buf_liste[*]} ; do |
---|
846 | local_file=$( basename ${target} ) |
---|
847 | i=0 |
---|
848 | while [ $i -lt $NB_ESSAI ] ; do |
---|
849 | \cp ${target} ${DEST}/${local_file} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
850 | status=$? |
---|
851 | if [ ${status} -gt 0 ]; then |
---|
852 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
853 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
854 | sleep $DELAI |
---|
855 | else |
---|
856 | break |
---|
857 | fi |
---|
858 | (( i = i + 1 )) |
---|
859 | done |
---|
860 | if [ ${status} -gt 0 ] ; then |
---|
861 | echo "IGCM_sys_Get : error" |
---|
862 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
863 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
864 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
865 | else |
---|
866 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
867 | fi |
---|
868 | done |
---|
869 | else |
---|
870 | i=0 |
---|
871 | while [ $i -lt $NB_ESSAI ] ; do |
---|
872 | \cp ${buf_liste} ${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
873 | status=$? |
---|
874 | if [ ${status} -gt 0 ]; then |
---|
875 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
876 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
877 | sleep $DELAI |
---|
878 | else |
---|
879 | break |
---|
880 | fi |
---|
881 | (( i = i + 1 )) |
---|
882 | done |
---|
883 | if [ ${status} -gt 0 ] ; then |
---|
884 | echo "IGCM_sys_Get : error" |
---|
885 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
886 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
887 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
888 | else |
---|
889 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
890 | fi |
---|
891 | fi |
---|
892 | fi |
---|
893 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
894 | } |
---|
895 | |
---|
896 | #D-#================================================== |
---|
897 | #D-function IGCM_sys_GetDate_FichWork |
---|
898 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
899 | #D-* Examples: |
---|
900 | #D- |
---|
901 | function IGCM_sys_GetDate_FichWork { |
---|
902 | IGCM_debug_PushStack "IGCM_sys_GetDate_FichWork" $@ |
---|
903 | if ( $DEBUG_sys ) ; then |
---|
904 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
905 | fi |
---|
906 | |
---|
907 | if [ $# -ge 3 ] ; then |
---|
908 | mode=$3 |
---|
909 | TimeStyle=$4 |
---|
910 | else |
---|
911 | mode="default" |
---|
912 | TimeStyle="%Y%m%d%H%M%S" |
---|
913 | fi |
---|
914 | |
---|
915 | typeset dateF |
---|
916 | set +A dateF -- $( ls -l --full-time --time-style=+"${TimeStyle}" ${1} ) |
---|
917 | |
---|
918 | case $mode in |
---|
919 | "default") |
---|
920 | eval ${2}=${dateF[5]} |
---|
921 | ;; |
---|
922 | "SplitFields") |
---|
923 | eval ${2}="${dateF[5]}\ ${dateF[6]}" |
---|
924 | ;; |
---|
925 | esac |
---|
926 | |
---|
927 | # donne la date filesys d'un fichier sur la machine work |
---|
928 | IGCM_debug_PopStack "IGCM_sys_GetDate_FichWork" |
---|
929 | } |
---|
930 | |
---|
931 | #D-#================================================== |
---|
932 | #D-function IGCM_sys_rebuild |
---|
933 | #D-* Purpose: rebuild parallel files |
---|
934 | #D-* Examples: |
---|
935 | #D- |
---|
936 | function IGCM_sys_rebuild { |
---|
937 | IGCM_debug_PushStack "IGCM_sys_rebuild" $@ |
---|
938 | if ( $DEBUG_sys ) ; then |
---|
939 | echo "IGCM_sys_rebuild :" $@ |
---|
940 | fi |
---|
941 | |
---|
942 | typeset NB_ESSAI DELAI status i firstArg |
---|
943 | # number of tentative |
---|
944 | NB_ESSAI=3 |
---|
945 | # time delay between tentative |
---|
946 | DELAI=2 |
---|
947 | |
---|
948 | i=0 |
---|
949 | while [ $i -lt $NB_ESSAI ] ; do |
---|
950 | rebuild -f -o $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
951 | status=$? |
---|
952 | if [ ${status} -gt 0 ] ; then |
---|
953 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
954 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
955 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
956 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
957 | firstArg=${1} |
---|
958 | \rm ${firstArg} |
---|
959 | sleep $DELAI |
---|
960 | else |
---|
961 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
962 | break |
---|
963 | fi |
---|
964 | (( i = i + 1 )) |
---|
965 | done |
---|
966 | |
---|
967 | if [ ${status} -gt 0 ] ; then |
---|
968 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
969 | IGCM_debug_Exit "rebuild" |
---|
970 | fi |
---|
971 | |
---|
972 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
973 | } |
---|
974 | |
---|
975 | #D-#================================================== |
---|
976 | #D-function IGCM_sys_rebuild_station |
---|
977 | #D-* Purpose: rebuild parallel files describing station |
---|
978 | #D-* Examples: |
---|
979 | #D- |
---|
980 | function IGCM_sys_rebuild_station { |
---|
981 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" $@ |
---|
982 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
983 | if ( $DEBUG_sys ) ; then |
---|
984 | echo "IGCM_sys_rebuild_station :" $@ |
---|
985 | fi |
---|
986 | |
---|
987 | # Station re-ordering is too expansive to be run within libIGCM |
---|
988 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
989 | # This re-ordering must be done "in memory" by the cmorization process |
---|
990 | |
---|
991 | # Only LMDZ text output contains the exact ordering of the station. |
---|
992 | # We isolate this in the code below: |
---|
993 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
994 | # 0 54 27.49999999999999 67.18309859154928 |
---|
995 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
996 | # 0 79 12.49999999999999 78.59154929577466 |
---|
997 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
998 | # 0 117 130.0000000000000 70.98591549295774 |
---|
999 | # 0 118 110.0000000000000 87.46478873239437 |
---|
1000 | # 1 40 4.999999999999995 51.97183098591550 |
---|
1001 | |
---|
1002 | list_opt=$@ |
---|
1003 | |
---|
1004 | # Invert Axis : t,x -> x,t |
---|
1005 | # t,pres,x -> x,t,pres |
---|
1006 | # So that we can concatenate along x |
---|
1007 | i=0 |
---|
1008 | for file_in in ${list_opt} ; do |
---|
1009 | (( i = i + 1)) |
---|
1010 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
1011 | # detect time counter and do the job only if present |
---|
1012 | var_unlim=$(ncdump -h ${file_in} | grep UNLIMITED | cut -d ' ' -f 1 | sed -e 's/^[ \t]*//' -e 's/[ \t]*$//') |
---|
1013 | if [ X${var_unlim} = Xtime_counter ] ; then |
---|
1014 | prefix_invert=$( basename ${file_in} .nc ) |
---|
1015 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
1016 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
1017 | fi |
---|
1018 | done |
---|
1019 | |
---|
1020 | # Concatenate |
---|
1021 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
1022 | |
---|
1023 | # Re-ivert file |
---|
1024 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
1025 | |
---|
1026 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
1027 | } |
---|
1028 | |
---|
1029 | ############################################################## |
---|
1030 | # NCO OPERATOR |
---|
1031 | |
---|
1032 | #D-#================================================== |
---|
1033 | #D-function IGCM_sys_ncap2 |
---|
1034 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
1035 | #D-* Examples: |
---|
1036 | #D- |
---|
1037 | function IGCM_sys_ncap2 { |
---|
1038 | IGCM_debug_PushStack "IGCM_sys_ncap2" $@ |
---|
1039 | if ( $DEBUG_sys ) ; then |
---|
1040 | echo "IGCM_sys_ncap2 :" $@ |
---|
1041 | fi |
---|
1042 | |
---|
1043 | typeset NB_ESSAI DELAI status i |
---|
1044 | # number of tentative |
---|
1045 | NB_ESSAI=3 |
---|
1046 | # time delay between tentative |
---|
1047 | DELAI=2 |
---|
1048 | |
---|
1049 | i=0 |
---|
1050 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1051 | ncap2 -C --buffer_size 838860800 "$@" > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1052 | status=$? |
---|
1053 | if [ ${status} -gt 0 ] ; then |
---|
1054 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
1055 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1056 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1057 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1058 | sleep $DELAI |
---|
1059 | else |
---|
1060 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1061 | break |
---|
1062 | fi |
---|
1063 | (( i = i + 1 )) |
---|
1064 | done |
---|
1065 | |
---|
1066 | if [ ${status} -gt 0 ] ; then |
---|
1067 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
1068 | IGCM_debug_Exit "ncap2" |
---|
1069 | fi |
---|
1070 | |
---|
1071 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
1072 | } |
---|
1073 | |
---|
1074 | #D-#================================================== |
---|
1075 | #D-function IGCM_sys_ncatted |
---|
1076 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
1077 | #D-* Examples: |
---|
1078 | #D- |
---|
1079 | function IGCM_sys_ncatted { |
---|
1080 | IGCM_debug_PushStack "IGCM_sys_ncatted" $@ |
---|
1081 | if ( $DEBUG_sys ) ; then |
---|
1082 | echo "IGCM_sys_ncatted :" $@ |
---|
1083 | fi |
---|
1084 | |
---|
1085 | typeset NB_ESSAI DELAI status i |
---|
1086 | # number of tentative |
---|
1087 | NB_ESSAI=3 |
---|
1088 | # time delay between tentative |
---|
1089 | DELAI=2 |
---|
1090 | |
---|
1091 | i=0 |
---|
1092 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1093 | ncatted "$@" > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1094 | status=$? |
---|
1095 | if [ ${status} -gt 0 ] ; then |
---|
1096 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
1097 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1098 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1099 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1100 | sleep $DELAI |
---|
1101 | else |
---|
1102 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1103 | break |
---|
1104 | fi |
---|
1105 | (( i = i + 1 )) |
---|
1106 | done |
---|
1107 | |
---|
1108 | if [ ${status} -gt 0 ] ; then |
---|
1109 | echo "IGCM_sys_ncatted : ncatted error" |
---|
1110 | IGCM_debug_Exit "ncatted" |
---|
1111 | fi |
---|
1112 | |
---|
1113 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
1114 | } |
---|
1115 | |
---|
1116 | #D-#================================================== |
---|
1117 | #D-function IGCM_sys_ncbo |
---|
1118 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
1119 | #D-* Examples: |
---|
1120 | #D- |
---|
1121 | function IGCM_sys_ncbo { |
---|
1122 | IGCM_debug_PushStack "IGCM_sys_ncbo" $@ |
---|
1123 | if ( $DEBUG_sys ) ; then |
---|
1124 | echo "IGCM_sys_ncbo :" $@ |
---|
1125 | fi |
---|
1126 | |
---|
1127 | typeset NB_ESSAI DELAI status i |
---|
1128 | # number of tentative |
---|
1129 | NB_ESSAI=3 |
---|
1130 | # time delay between tentative |
---|
1131 | DELAI=2 |
---|
1132 | |
---|
1133 | i=0 |
---|
1134 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1135 | ncbo -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1136 | status=$? |
---|
1137 | if [ ${status} -gt 0 ] ; then |
---|
1138 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
1139 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1140 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1141 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1142 | sleep $DELAI |
---|
1143 | else |
---|
1144 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1145 | break |
---|
1146 | fi |
---|
1147 | (( i = i + 1 )) |
---|
1148 | done |
---|
1149 | |
---|
1150 | if [ ${status} -gt 0 ] ; then |
---|
1151 | echo "IGCM_sys_ncbo : ncbo error" |
---|
1152 | IGCM_debug_Exit "ncbo" |
---|
1153 | fi |
---|
1154 | |
---|
1155 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
1156 | } |
---|
1157 | |
---|
1158 | #D-#================================================== |
---|
1159 | #D-function IGCM_sys_ncdif |
---|
1160 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
1161 | #D-* Examples: |
---|
1162 | #D- |
---|
1163 | function IGCM_sys_ncdiff { |
---|
1164 | IGCM_debug_PushStack "IGCM_sys_ncdiff" $@ |
---|
1165 | if ( $DEBUG_sys ) ; then |
---|
1166 | echo "IGCM_sys_ncdiff :" $@ |
---|
1167 | fi |
---|
1168 | |
---|
1169 | typeset NB_ESSAI DELAI status i |
---|
1170 | # number of tentative |
---|
1171 | NB_ESSAI=3 |
---|
1172 | # time delay between tentative |
---|
1173 | DELAI=2 |
---|
1174 | |
---|
1175 | i=0 |
---|
1176 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1177 | ncdiff -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1178 | status=$? |
---|
1179 | if [ ${status} -gt 0 ] ; then |
---|
1180 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
1181 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1182 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1183 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1184 | sleep $DELAI |
---|
1185 | else |
---|
1186 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1187 | break |
---|
1188 | fi |
---|
1189 | (( i = i + 1 )) |
---|
1190 | done |
---|
1191 | |
---|
1192 | if [ ${status} -gt 0 ] ; then |
---|
1193 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
1194 | IGCM_debug_Exit "ncdiff" |
---|
1195 | fi |
---|
1196 | |
---|
1197 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
1198 | } |
---|
1199 | |
---|
1200 | #D-#================================================== |
---|
1201 | #D-function IGCM_sys_ncea |
---|
1202 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
1203 | #D-* Examples: |
---|
1204 | #D- |
---|
1205 | function IGCM_sys_ncea { |
---|
1206 | IGCM_debug_PushStack "IGCM_sys_ncea" $@ |
---|
1207 | if ( $DEBUG_sys ) ; then |
---|
1208 | echo "IGCM_sys_ncea :" $@ |
---|
1209 | fi |
---|
1210 | |
---|
1211 | typeset NB_ESSAI DELAI status i |
---|
1212 | # number of tentative |
---|
1213 | NB_ESSAI=3 |
---|
1214 | # time delay between tentative |
---|
1215 | DELAI=2 |
---|
1216 | |
---|
1217 | i=0 |
---|
1218 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1219 | ncea -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1220 | status=$? |
---|
1221 | if [ ${status} -gt 0 ] ; then |
---|
1222 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
1223 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1224 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1225 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1226 | sleep $DELAI |
---|
1227 | else |
---|
1228 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1229 | break |
---|
1230 | fi |
---|
1231 | (( i = i + 1 )) |
---|
1232 | done |
---|
1233 | |
---|
1234 | if [ ${status} -gt 0 ] ; then |
---|
1235 | echo "IGCM_sys_ncea : ncea error" |
---|
1236 | IGCM_debug_Exit "ncea" |
---|
1237 | fi |
---|
1238 | |
---|
1239 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
1240 | } |
---|
1241 | |
---|
1242 | #D-#================================================== |
---|
1243 | #D-function IGCM_sys_ncecat |
---|
1244 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
1245 | #D-* Examples: |
---|
1246 | #D- |
---|
1247 | function IGCM_sys_ncecat { |
---|
1248 | IGCM_debug_PushStack "IGCM_sys_ncecat" $@ |
---|
1249 | if ( $DEBUG_sys ) ; then |
---|
1250 | echo "IGCM_sys_ncecat :" $@ |
---|
1251 | fi |
---|
1252 | |
---|
1253 | typeset NB_ESSAI DELAI status i |
---|
1254 | # number of tentative |
---|
1255 | NB_ESSAI=3 |
---|
1256 | # time delay between tentative |
---|
1257 | DELAI=2 |
---|
1258 | |
---|
1259 | i=0 |
---|
1260 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1261 | ncecat -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1262 | status=$? |
---|
1263 | if [ ${status} -gt 0 ] ; then |
---|
1264 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
1265 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1266 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1267 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1268 | sleep $DELAI |
---|
1269 | else |
---|
1270 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1271 | break |
---|
1272 | fi |
---|
1273 | (( i = i + 1 )) |
---|
1274 | done |
---|
1275 | |
---|
1276 | if [ ${status} -gt 0 ] ; then |
---|
1277 | echo "IGCM_sys_ncecat : ncecat error" |
---|
1278 | IGCM_debug_Exit "ncecat" |
---|
1279 | fi |
---|
1280 | |
---|
1281 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
1282 | } |
---|
1283 | |
---|
1284 | #D-#================================================== |
---|
1285 | #D-function IGCM_sys_ncflint |
---|
1286 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
1287 | #D-* Examples: |
---|
1288 | #D- |
---|
1289 | function IGCM_sys_ncflint { |
---|
1290 | IGCM_debug_PushStack "IGCM_sys_ncflint" $@ |
---|
1291 | if ( $DEBUG_sys ) ; then |
---|
1292 | echo "IGCM_sys_ncflint :" $@ |
---|
1293 | fi |
---|
1294 | |
---|
1295 | typeset NB_ESSAI DELAI status i |
---|
1296 | # number of tentative |
---|
1297 | NB_ESSAI=3 |
---|
1298 | # time delay between tentative |
---|
1299 | DELAI=2 |
---|
1300 | |
---|
1301 | i=0 |
---|
1302 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1303 | ncflint -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1304 | status=$? |
---|
1305 | if [ ${status} -gt 0 ] ; then |
---|
1306 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
1307 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1308 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1309 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1310 | sleep $DELAI |
---|
1311 | else |
---|
1312 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1313 | break |
---|
1314 | fi |
---|
1315 | (( i = i + 1 )) |
---|
1316 | done |
---|
1317 | |
---|
1318 | if [ ${status} -gt 0 ] ; then |
---|
1319 | echo "IGCM_sys_ncflint : ncflint error" |
---|
1320 | IGCM_debug_Exit "ncflint" |
---|
1321 | fi |
---|
1322 | |
---|
1323 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
1324 | } |
---|
1325 | |
---|
1326 | #D-#================================================== |
---|
1327 | #D-function IGCM_sys_ncks |
---|
1328 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
1329 | #D-* Examples: |
---|
1330 | #D- |
---|
1331 | function IGCM_sys_ncks { |
---|
1332 | IGCM_debug_PushStack "IGCM_sys_ncks" $@ |
---|
1333 | if ( $DEBUG_sys ) ; then |
---|
1334 | echo "IGCM_sys_ncks :" $@ |
---|
1335 | fi |
---|
1336 | |
---|
1337 | typeset NB_ESSAI DELAI status i |
---|
1338 | # number of tentative |
---|
1339 | NB_ESSAI=3 |
---|
1340 | # time delay between tentative |
---|
1341 | DELAI=2 |
---|
1342 | |
---|
1343 | i=0 |
---|
1344 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1345 | ncks -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1346 | status=$? |
---|
1347 | if [ ${status} -gt 0 ] ; then |
---|
1348 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
1349 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1350 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1351 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1352 | sleep $DELAI |
---|
1353 | else |
---|
1354 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1355 | break |
---|
1356 | fi |
---|
1357 | (( i = i + 1 )) |
---|
1358 | done |
---|
1359 | |
---|
1360 | if [ ${status} -gt 0 ] ; then |
---|
1361 | echo "IGCM_sys_ncks : ncks error" |
---|
1362 | IGCM_debug_Exit "ncks" |
---|
1363 | fi |
---|
1364 | |
---|
1365 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
1366 | } |
---|
1367 | |
---|
1368 | #D-#================================================== |
---|
1369 | #D-function IGCM_sys_ncpdq |
---|
1370 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
1371 | #D-* Examples: |
---|
1372 | #D- |
---|
1373 | function IGCM_sys_ncpdq { |
---|
1374 | IGCM_debug_PushStack "IGCM_sys_ncpdq" $@ |
---|
1375 | if ( $DEBUG_sys ) ; then |
---|
1376 | echo "IGCM_sys_ncpdq :" $@ |
---|
1377 | fi |
---|
1378 | |
---|
1379 | typeset NB_ESSAI DELAI status i |
---|
1380 | # number of tentative |
---|
1381 | NB_ESSAI=3 |
---|
1382 | # time delay between tentative |
---|
1383 | DELAI=2 |
---|
1384 | |
---|
1385 | i=0 |
---|
1386 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1387 | ncpdq -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1388 | status=$? |
---|
1389 | if [ ${status} -gt 0 ] ; then |
---|
1390 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
1391 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1392 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1393 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1394 | sleep $DELAI |
---|
1395 | else |
---|
1396 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1397 | break |
---|
1398 | fi |
---|
1399 | (( i = i + 1 )) |
---|
1400 | done |
---|
1401 | |
---|
1402 | if [ ${status} -gt 0 ] ; then |
---|
1403 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
1404 | IGCM_debug_Exit "ncpdq" |
---|
1405 | fi |
---|
1406 | |
---|
1407 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
1408 | } |
---|
1409 | |
---|
1410 | #D-#================================================== |
---|
1411 | #D-function IGCM_sys_ncra |
---|
1412 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
1413 | #D-* Examples: |
---|
1414 | #D- |
---|
1415 | function IGCM_sys_ncra { |
---|
1416 | IGCM_debug_PushStack "IGCM_sys_ncra" $@ |
---|
1417 | if ( $DEBUG_sys ) ; then |
---|
1418 | echo "IGCM_sys_ncra :" $@ |
---|
1419 | fi |
---|
1420 | |
---|
1421 | typeset NB_ESSAI DELAI status i |
---|
1422 | # number of tentative |
---|
1423 | NB_ESSAI=3 |
---|
1424 | # time delay between tentative |
---|
1425 | DELAI=2 |
---|
1426 | |
---|
1427 | i=0 |
---|
1428 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1429 | ncra -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1430 | status=$? |
---|
1431 | if [ ${status} -gt 0 ] ; then |
---|
1432 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
1433 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1434 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1435 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1436 | sleep $DELAI |
---|
1437 | else |
---|
1438 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1439 | break |
---|
1440 | fi |
---|
1441 | (( i = i + 1 )) |
---|
1442 | done |
---|
1443 | |
---|
1444 | if [ ${status} -gt 0 ] ; then |
---|
1445 | echo "IGCM_sys_ncra : ncra error" |
---|
1446 | IGCM_debug_Exit "ncra" |
---|
1447 | fi |
---|
1448 | |
---|
1449 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
1450 | } |
---|
1451 | |
---|
1452 | #D-#================================================== |
---|
1453 | #D-function IGCM_sys_ncrcat |
---|
1454 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
1455 | #D-* Examples: |
---|
1456 | #D- |
---|
1457 | function IGCM_sys_ncrcat { |
---|
1458 | IGCM_debug_PushStack "IGCM_sys_ncrcat" $@ |
---|
1459 | if ( $DEBUG_sys ) ; then |
---|
1460 | echo "IGCM_sys_ncrcat :" $@ |
---|
1461 | fi |
---|
1462 | |
---|
1463 | typeset NB_ESSAI DELAI status i lastArg |
---|
1464 | # number of tentative |
---|
1465 | NB_ESSAI=3 |
---|
1466 | # time delay between tentative |
---|
1467 | DELAI=2 |
---|
1468 | |
---|
1469 | i=0 |
---|
1470 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1471 | ncrcat -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1472 | status=$? |
---|
1473 | if [ ${status} -gt 0 ] ; then |
---|
1474 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
1475 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1476 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1477 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1478 | sleep $DELAI |
---|
1479 | elif ( [ ! "X$( grep "WARNING Intra-file non-monotonicity" ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ )" = "X" ] && [ X${config_Post_IgnoreNonMonotonic} = XFALSE ] ) ; then |
---|
1480 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
1481 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1482 | # remove files having corrupted time axis |
---|
1483 | eval lastArg=\${$#} |
---|
1484 | IGCM_debug_Print 2 "Remove files having corrupted time axis" |
---|
1485 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
1486 | \rm ${lastArg} |
---|
1487 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1488 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1489 | sleep $DELAI |
---|
1490 | else |
---|
1491 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1492 | break |
---|
1493 | fi |
---|
1494 | (( i = i + 1 )) |
---|
1495 | done |
---|
1496 | |
---|
1497 | # Special case for spinup with cyclic time axis: change attribute calendar to none |
---|
1498 | if [ X${config_Post_IgnoreNonMonotonic} = XTRUE ] ; then |
---|
1499 | eval lastArg=\${$#} |
---|
1500 | echo "IGCM_sys_ncrcat : change attribute calendar to none in file:" ${lastArg} |
---|
1501 | IGCM_sys_ncatted -a calendar,time_counter,m,c,none ${lastArg} |
---|
1502 | fi |
---|
1503 | |
---|
1504 | if [ ${status} -gt 0 ] ; then |
---|
1505 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
1506 | #IGCM_debug_Exit "ncrcat" |
---|
1507 | fi |
---|
1508 | |
---|
1509 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
1510 | } |
---|
1511 | |
---|
1512 | #D-#================================================== |
---|
1513 | #D-function IGCM_sys_ncrename |
---|
1514 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
1515 | #D-* Examples: |
---|
1516 | #D- |
---|
1517 | function IGCM_sys_ncrename { |
---|
1518 | IGCM_debug_PushStack "IGCM_sys_ncrename" $@ |
---|
1519 | if ( $DEBUG_sys ) ; then |
---|
1520 | echo "IGCM_sys_ncrename :" $@ |
---|
1521 | fi |
---|
1522 | |
---|
1523 | typeset NB_ESSAI DELAI status i |
---|
1524 | # number of tentative |
---|
1525 | NB_ESSAI=3 |
---|
1526 | # time delay between tentative |
---|
1527 | DELAI=2 |
---|
1528 | |
---|
1529 | i=0 |
---|
1530 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1531 | ncrename $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1532 | status=$? |
---|
1533 | if [ ${status} -gt 0 ] ; then |
---|
1534 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
1535 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1536 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1537 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1538 | sleep $DELAI |
---|
1539 | else |
---|
1540 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1541 | break |
---|
1542 | fi |
---|
1543 | (( i = i + 1 )) |
---|
1544 | done |
---|
1545 | |
---|
1546 | if [ ${status} -gt 0 ] ; then |
---|
1547 | echo "IGCM_sys_ncrename : ncrename error" |
---|
1548 | IGCM_debug_Exit "ncrename" |
---|
1549 | fi |
---|
1550 | |
---|
1551 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
1552 | } |
---|
1553 | |
---|
1554 | #D-#================================================== |
---|
1555 | #D-function IGCM_sys_ncwa |
---|
1556 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
1557 | #D-* Examples: |
---|
1558 | #D- |
---|
1559 | function IGCM_sys_ncwa { |
---|
1560 | IGCM_debug_PushStack "IGCM_sys_ncwa" $@ |
---|
1561 | if ( $DEBUG_sys ) ; then |
---|
1562 | echo "IGCM_sys_ncwa :" $@ |
---|
1563 | fi |
---|
1564 | |
---|
1565 | typeset NB_ESSAI DELAI status i |
---|
1566 | # number of tentative |
---|
1567 | NB_ESSAI=3 |
---|
1568 | # time delay between tentative |
---|
1569 | DELAI=2 |
---|
1570 | |
---|
1571 | i=0 |
---|
1572 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1573 | ncwa -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1574 | status=$? |
---|
1575 | if [ ${status} -gt 0 ] ; then |
---|
1576 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
1577 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1578 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1579 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1580 | sleep $DELAI |
---|
1581 | else |
---|
1582 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1583 | break |
---|
1584 | fi |
---|
1585 | (( i = i + 1 )) |
---|
1586 | done |
---|
1587 | |
---|
1588 | if [ ${status} -gt 0 ] ; then |
---|
1589 | echo "IGCM_sys_ncwa : ncwa error" |
---|
1590 | IGCM_debug_Exit "ncwa" |
---|
1591 | fi |
---|
1592 | |
---|
1593 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
1594 | } |
---|
1595 | |
---|
1596 | ############################################################## |
---|
1597 | # CDO OPERATOR |
---|
1598 | |
---|
1599 | #D-#================================================== |
---|
1600 | #D-function IGCM_sys_cdo |
---|
1601 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
1602 | #D-* Examples: |
---|
1603 | #D- |
---|
1604 | function IGCM_sys_cdo { |
---|
1605 | IGCM_debug_PushStack "IGCM_sys_cdo" $@ |
---|
1606 | if ( $DEBUG_sys ) ; then |
---|
1607 | echo "IGCM_sys_cdo :" $@ |
---|
1608 | fi |
---|
1609 | |
---|
1610 | typeset status |
---|
1611 | |
---|
1612 | \cdo $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1613 | status=$? |
---|
1614 | if [ ${status} -gt 0 ] ; then |
---|
1615 | echo "IGCM_sys_cdo : error code ${status}" |
---|
1616 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1617 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1618 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1619 | return 1 |
---|
1620 | else |
---|
1621 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1622 | return 0 |
---|
1623 | fi |
---|
1624 | |
---|
1625 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1626 | } |
---|
1627 | |
---|
1628 | # |
---|