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source: trunk/libIGCM/libIGCM_comp/libIGCM_comp.ksh @ 1580

Last change on this file since 1580 was 1580, checked in by acosce, 15 months ago
remove test on IPSLCM config for CMIP6 workflow - not useful for redhat8
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
File size: 79.0 KB

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1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip
5	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#========================================================================
15	function IGCM_comp_Initialize
16	{
17	IGCM_debug_PushStack "IGCM_comp_Initialize"
18
19	# Debug Print :
20	echo
21	IGCM_debug_Print 1 "IGCM_comp_Initialize"
22	echo
23
24	typeset comp compname comptagname auxprint card_UserChoices first_option option i j
25	for comp in ${config_ListOfComponents[*]} ; do
26
27	# Define component
28	IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp}
29	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
30	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
31
32	# Debug Print
33	IGCM_debug_Print 1 "Initialize ${comp} : ${compname} component."
34
35	# ${compname}.card PATH
36	card=${SUBMIT_DIR}/COMP/${compname}.card
37
38	# Manage component executable
39	IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card Executable ${comp}
40
41	# Define all options in section [comp]
42	IGCM_debug_Print 3 " DefineArrayFromSection : ${comp}"
43	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ${comp}
44	eval config_comp=\${config_${comp}[*]} > /dev/null 2>&1
45	for option in ${config_comp[*]} ; do
46	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} ${option}
47	done
48	IGCM_debug_Print 3 " Found in section config_${comp} : ${config_comp[*]} "
49
50	# Debug Print :
51	eval auxprint=\${config_${comp}_WriteFrequency}
52	IGCM_debug_Print 1 "Write frequency for ${compname} : ${auxprint} "
53	#2> /dev/null
54
55	# Debug Print :
56	IGCM_debug_Print 2 "Initialize following component library"
57
58	# Source drivers in directory DRIVER if it exist
59	# else source them from directory COMP
60	if [ -d ${SUBMIT_DIR}/DRIVER ] ; then
61	IGCM_debug_Print 2 ${SUBMIT_DIR}/DRIVER/${compname}.driver
62	# Source component library
63	. ${SUBMIT_DIR}/DRIVER/${compname}.driver
64	else
65	IGCM_debug_Print 2 ${SUBMIT_DIR}/COMP/${compname}.driver
66	# Source component library
67	. ${SUBMIT_DIR}/COMP/${compname}.driver
68	fi
69	IGCM_debug_Print 3 "With tag : ${comptagname}"
70
71	# Debug Print
72	IGCM_debug_Print 3 "Initialize ${comp} output directory."
73
74	# Define ARCHIVED Dirs
75	eval R_OUT_${comp}=${R_SAVE}/${comp}
76	eval IGCM_sys_MkdirArchive \${R_OUT_${comp}}
77
78	eval R_OUT_${comp}_O=\${R_OUT_${comp}}/Output
79	eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_O}
80
81	eval R_OUT_${comp}_A=\${R_OUT_${comp}}/Analyse
82	eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_A}
83
84	eval R_OUT_${comp}_R=\${R_OUT_${comp}}/Restart
85	[ ${config_Post_PackFrequency} = NONE ] && eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_R}
86
87	eval R_OUT_${comp}_D=\${R_OUT_${comp}}/Debug
88	[ ${config_Post_PackFrequency} = NONE ] && eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_D}
89
90	eval R_OUT_${comp}_O_H=\${R_OUT_${comp}_O}/HF
91	eval R_OUT_${comp}_O_D=\${R_OUT_${comp}_O}/DA
92	eval R_OUT_${comp}_O_M=\${R_OUT_${comp}_O}/MO
93	eval R_OUT_${comp}_O_Y=\${R_OUT_${comp}_O}/YE
94
95	eval R_OUT_${comp}_A_H=\${R_OUT_${comp}_A}/TS_HF
96	eval R_OUT_${comp}_A_D=\${R_OUT_${comp}_A}/TS_DA
97	eval R_OUT_${comp}_A_M=\${R_OUT_${comp}_A}/TS_MO
98	eval R_OUT_${comp}_A_Y=\${R_OUT_${comp}_A}/TS_YE
99
100	# Define BUFFERED Dirs
101	if ( [ ! ${config_Post_PackFrequency} = NONE ] \|\| [ X${config_UserChoices_SpaceName} = XTEST ] ) ; then
102	eval R_BUF_${comp}=${R_BUFR}/${comp}
103	eval IGCM_sys_Mkdir \${R_BUF_${comp}}
104
105	eval R_BUF_${comp}_O=\${R_BUF_${comp}}/Output
106	eval IGCM_sys_Mkdir \${R_BUF_${comp}_O}
107
108	eval R_BUF_${comp}_A=\${R_BUF_${comp}}/Analyse
109	eval IGCM_sys_Mkdir \${R_BUF_${comp}_A}
110
111	eval R_BUF_${comp}_R=\${R_BUF_${comp}}/Restart
112	eval IGCM_sys_Mkdir \${R_BUF_${comp}_R}
113
114	eval R_BUF_${comp}_D=\${R_BUF_${comp}}/Debug
115	eval IGCM_sys_Mkdir \${R_BUF_${comp}_D}
116
117	eval R_BUF_${comp}_O_H=\${R_BUF_${comp}_O}/HF
118	eval R_BUF_${comp}_O_D=\${R_BUF_${comp}_O}/DA
119	eval R_BUF_${comp}_O_M=\${R_BUF_${comp}_O}/MO
120	eval R_BUF_${comp}_O_Y=\${R_BUF_${comp}_O}/YE
121
122	eval R_BUF_${comp}_A_H=\${R_BUF_${comp}_A}/TS_HF
123	eval R_BUF_${comp}_A_D=\${R_BUF_${comp}_A}/TS_DA
124	eval R_BUF_${comp}_A_M=\${R_BUF_${comp}_A}/TS_MO
125	eval R_BUF_${comp}_A_Y=\${R_BUF_${comp}_A}/TS_YE
126
127	# Define CMIP6 Dirs
128	eval CMIP6_BUF_${comp}=${R_CMIP}/CMIP6/${comp}
129	fi
130
131	# Read UserChoices section of component card
132	IGCM_debug_Print 2 "DefineArrayFromSection : ${compname}_UserChoices ${card}"
133	IGCM_card_DefineArrayFromSection ${card} UserChoices
134	eval first_option=\${${compname}_UserChoices[0]} > /dev/null 2>&1
135
136	# If section is not empty we define corresponding variables
137	if [ X${first_option} != X"Error:" ] ; then
138	if [ X${card_UserChoices[0]} != X ] ; then
139	unset card_UserChoices
140	fi
141	eval set +A card_UserChoices -- \${${compname}_UserChoices[*]} > /dev/null 2>&1
142	IGCM_debug_Print 3 "${compname}_UserChoices_values:"
143	for option in ${card_UserChoices[*]} ; do
144	IGCM_card_DefineVariableFromOption ${card} UserChoices ${option}
145	eval IGCM_debug_Print 3 "${option}=\${${compname}_UserChoices_${option}}"
146	done
147	fi
148
149	# Read and Build Output File stuff
150	IGCM_debug_Print 2 "DefineArrayFromOption : ${compname}_OutputFiles ${card}"
151	IGCM_card_DefineArrayFromOption ${card} OutputFiles List
152	ListFilesName=${compname}_OutputFiles_List
153	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
154	#
155	if [ X${FileName0} != X${NULL_STR} ] ; then
156	#
157	#IGCM_debug_Print 1 "Component : ${compname}"
158	#
159	# INITIALISATION
160	#
161	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
162	#
163	i=2
164	#
165	until [ $i -ge $NbFiles ]; do
166	#
167	eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1
168	#
169	if [ X${flag_post} != XNONE ] ; then
170	#
171	# First of all
172	#
173	IGCM_card_DefineArrayFromSection ${card} ${flag_post}
174	# This section is mandatory
175	if [ "X$( eval echo \${${compname}_${flag_post}[@]} )" = "X" ] ; then
176	IGCM_debug_Print 1 "IGCM_card_DefineArrayFromSection ${card} ${flag_post}"
177	IGCM_debug_Exit "${flag_post} section do not exist in ${card}. Please check your card."
178	IGCM_debug_Verif_Exit
179	fi
180	#
181	# Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default
182	#
183	# variable option allready typeset above
184	for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do
185	if [ ${option} = Seasonal ] ; then
186	FoundSeasonal=true
187	IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal
188	fi
189	done
190	#
191	if [ ! X${FoundSeasonal} = Xtrue ] ; then
192	eval ${compname}_${flag_post}_Seasonal=ON
193	fi
194	#
195	if [ $( eval echo \${${compname}_${flag_post}_Seasonal} ) = ON ] ; then
196	Seasonal=true
197	fi
198
199	# Dimension = vide si vieille card.
200	IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars
201	IGCM_card_DefineArrayFromOption ${card} ${flag_post} Patches
202	if [ X"$( eval echo \${${compname}_${flag_post}_TimeSeriesVars[*]} )" = X"Option not" ] ; then
203	# New TimeSeriesVar description, with 2D, 3D and associate ChunckJob.
204	ListDimension[0]=2D
205	ListDimension[1]=3D
206	TimeSeries=false
207	iLoop=${#ListDimension[*]}
208	j=0
209	until [ $j -ge ${iLoop} ]; do
210	Dimension=${ListDimension[${j}]}
211	IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars${Dimension}
212	IGCM_card_DefineVariableFromOption ${card} ${flag_post} ChunckJob${Dimension}
213	#
214	# Time series WITHOUT chunk
215	#
216	if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then
217	if [ $( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) = NONE ] ; then
218	IGCM_debug_Print 3 "${Dimension} time series activated for ${flag_post}"
219	eval TimeSeries${Dimension}=true
220	fi
221	fi
222	#
223	# Time series WITH chunk
224	#
225	if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then
226	chunck_size=$( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} )
227	if [ ! ${chunck_size} = NONE ] && [ ! ${chunck_size} = OFF ] ; then
228	IGCM_debug_Print 3 "${Dimension} time series activated with chunck for ${flag_post}"
229	eval TimeSeriesChunck${Dimension}=true
230	eval CHUNCK${Dimension}_COMP[\${#CHUNCK${Dimension}_COMP[*]}]=${comp}
231	eval CHUNCK${Dimension}_FLAG[\${#CHUNCK${Dimension}_FLAG[*]}]=${i}
232	eval CHUNCK${Dimension}_NAME[\${#CHUNCK${Dimension}_NAME[*]}]=${flag_post}
233	eval CHUNCK${Dimension}_SIZE[\${#CHUNCK${Dimension}_SIZE[*]}]=${chunck_size}
234	fi
235	fi
236	(( j=j+1 ))
237	done
238	else
239	ListDimension[0]=""
240	TimeSeries=true
241	TimeSeries2D=false
242	TimeSeries3D=false
243	TimeSeriesChunck2D=false
244	TimeSeriesChunck3D=false
245	fi
246	fi
247	(( i=i+3 ))
248	done
249	fi
250	# Debug Print
251	IGCM_debug_Print 3 "Initialize ${compname} with driver."
252	# INIT component
253	${comp}_Initialize
254	echo
255	done
256
257	IGCM_debug_PopStack "IGCM_comp_Initialize"
258	}
259
260	#=======================================================================
261	function IGCM_comp_PrepareDeletedFiles
262	{
263	IGCM_debug_PushStack "IGCM_comp_PrepareDeletedFiles" $@
264
265	if [ X${2} != X. ] ; then
266	eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${2} ) > /dev/null 2>&1
267	else
268	eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${1} ) > /dev/null 2>&1
269	fi
270
271	IGCM_debug_PopStack "IGCM_comp_PrepareDeletedFiles"
272	}
273
274	#=======================================================================
275	function IGCM_comp_PrepareXiosFiles
276	{
277	IGCM_debug_PushStack "IGCM_comp_PrepareXiosFiles" $@
278
279	typeset file
280	[ X${2} != X. ] && file=$( basename ${2} ) \|\| file=$( basename ${1} )
281
282	if [ $( echo ${file} \| grep "^field_def_" \| wc -l ) = 1 ] ; then
283	eval FieldDef[${#FieldDef[@]}]=${file} > /dev/null 2>&1
284	fi
285	if [ $( echo ${file} \| grep "^file_def_" \| wc -l ) = 1 ] ; then
286	eval FileDef[${#FileDef[@]}]=${file} > /dev/null 2>&1
287	fi
288	if [ $( echo ${file} \| grep "^timeseries_def_" \| wc -l ) = 1 ] ; then
289	eval FileDef[${#FileDef[@]}]=${file} > /dev/null 2>&1
290	fi
291
292	IGCM_debug_PopStack "IGCM_comp_PrepareXiosFiles"
293	}
294
295	#=======================================================================
296	function IGCM_comp_GetInputInitialStateFiles
297	{
298	IGCM_debug_PushStack "IGCM_comp_GetInputInitialStateFiles"
299
300	# Debug Print :
301	echo
302	IGCM_debug_Print 1 "IGCM_comp_GetInputInitialStateFiles"
303	echo
304
305	# Only the first time step need InitialStateFiles
306	# otherwise it's BoundaryConditions
307	if ( ${FirstInitialize} ) ; then
308	typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_
309	typeset file_in_ file_in file_out_ file_out do_init
310	for comp in ${config_ListOfComponents[*]} ; do
311	# Initialize
312	do_init="y"
313	# Do we need to bring initial state file for this component
314	if ( [ "${config_Restarts_OverRule}" = "y" ] \|\| [ "${config_Restarts_OverRule}" = "Y" ] ) ; then
315	eval do_init="n"
316	else
317	# Read component Restarts parameters
318	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart
319	eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1
320	if [ "${do_start}" = "y" ] ; then
321	do_init="n"
322	else
323	do_init="y"
324	fi
325	fi
326
327	if [ "${do_init}" = "y" ] ; then
328	# Define component
329	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
330	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
331
332	# Debug Print :
333	IGCM_debug_Print 3 "Initialisation files ${compname}"
334
335	card=${SUBMIT_DIR}/COMP/${compname}.card
336
337	IGCM_card_DefineArrayFromOption ${card} InitialStateFiles List
338	ListFilesName=${compname}_InitialStateFiles_List
339
340	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
341	if [ X${FileName0} != X${NULL_STR} ] ; then
342	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
343	(( i=0 ))
344	until [ $i -ge $NbFiles ]; do
345	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
346	eval file_in=${file_in_}
347	(( i_ = i+1 ))
348	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
349	eval file_out=${file_out_}
350
351	IGCM_sys_IsFileArchived ${file_in}
352	if [ $? = 0 ] ; then
353	IGCM_sys_Get ${file_in} ${file_out}
354	#IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out}
355	else
356	IGCM_sys_Cp ${file_in} ${file_out}
357	fi
358	(( i=i+2 ))
359	done
360	fi
361	fi
362	done
363	fi
364	IGCM_debug_PopStack "IGCM_comp_GetInputInitialStateFiles"
365	}
366
367	#=======================================================================
368	# Definition of Smooth modulo function
369	# usage :
370	# IGCM_SmoothModulo StringModulo value
371	#
372	# StringModulo : A string of min max and modulo like definition of Scilab vectors.
373	# [min]:[modulo:][max]
374	# where :
375	# [] value are optionnals;
376	# empty min equal 1
377	# empty max equal infinity
378	# modulo not given or empty equal 1
379	# empty string or just ':' equal always.
380	#
381	# value : the value to test with the definition
382	#
383	# return : true(1)/false(0)
384	function IGCM_SmoothModulo
385	{
386	IGCM_debug_PushStack "IGCM_SmoothModulo"
387	typeset defVector ModValue
388
389	eval set +A defVector -- $( echo "${1}" \| \
390	gawk -F ':' '{print ($1 == "" ? 1 : $1) " " (NF==3 ? ($2 == "" ? 1 : $2) : 1) " " (NF==3 ? ($3 == "" ? -1 : $3) : ($2 == "" ? -1 : $2))}' )
391
392	# Save Smooth Min and Max. Needed to call IGCM_sys_Get when appropriate
393	arr[1]=${defVector[0]}
394	arr[2]=${defVector[2]}
395
396	# Test limits :
397	# ${defVector[0]} <= ${2} <= ${defVector[2]}
398	# or ${defVector[2]} == -1
399	if ( [ ${2} -ge ${defVector[0]} ] && ( [ ${2} -le ${defVector[2]} ] \|\| [ ${defVector[2]} -lt 0 ] ) ) ; then
400	# Test modulo
401	ModValue=$( expr \( ${2} - ${defVector[0]} \) % ${defVector[1]} )
402	if [ ${ModValue} -eq 0 ] ; then
403	arr[3]=true
404	echo ${arr[@]}
405	IGCM_debug_PopStack "IGCM_SmoothModulo"
406	return 1
407	else
408	arr[3]=false
409	echo ${arr[@]}
410	IGCM_debug_PopStack "IGCM_SmoothModulo"
411	return 0
412	fi
413	else
414	arr[3]=false
415	echo ${arr[@]}
416	IGCM_debug_PopStack "IGCM_SmoothModulo"
417	return 0
418	fi
419	}
420
421	#=======================================================================
422	function IGCM_comp_GetInputSmoothFiles
423	{
424	IGCM_debug_PushStack "IGCM_comp_GetInputSmoothFiles"
425
426	# Debug Print :
427	echo
428	IGCM_debug_Print 1 "IGCM_comp_GetInputSmoothFiles"
429	echo
430
431	typeset comp compname comptagname card ListFilesName FileName0 NbFiles j i i_ i__
432	typeset file_in_ file_in file_out_ file_out ret SmoothDef aux val
433
434	for comp in ${config_ListOfComponents[*]} ; do
435	# Define component
436	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
437	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
438
439	# Debug Print :
440	IGCM_debug_Print 3 "Smooth files ${compname}"
441
442	card=${SUBMIT_DIR}/COMP/${compname}.card
443
444	IGCM_card_DefineArrayFromOption ${card} SmoothFiles List
445	ListFilesName=${compname}_SmoothFiles_List
446	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
447
448	if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != X"Section" ] ) ; then
449	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
450
451	(( i=0 ))
452	until [ $i -ge $NbFiles ]; do
453	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
454	eval file_in=${file_in_}
455	(( i_ = i+1 ))
456	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
457	eval file_out=${file_out_}
458
459	# define CumulPeriod definition for this file
460	(( i__ = i+2 ))
461	eval SmoothDef=\${${ListFilesName}[$i__]}
462	IGCM_debug_Print 3 " ${file_in} ${SmoothDef}"
463	aux=$( IGCM_SmoothModulo ${SmoothDef} ${CumulPeriod} )
464	j=1
465	for val in ${aux} ; do
466	[ ${j} -eq 1 ] && SmoothMin=${val}
467	[ ${j} -eq 2 ] && SmoothMax=${val}
468	[ ${j} -eq 3 ] && ret=${val}
469	(( j=j+1 ))
470	done
471	[ ${SmoothMax} -eq -1 ] && SmoothMax=${CumulPeriod}
472	if ( [ X${ret} = Xtrue ] \|\| ( [ ${Period} -eq 1 ] && [ ${CumulPeriod} -ge ${SmoothMin} ] && [ ${CumulPeriod} -le ${SmoothMax} ] ) ) ; then
473
474	IGCM_sys_IsFileArchived ${file_in}
475	if [ $? = 0 ] ; then
476	IGCM_sys_Get ${file_in} ${file_out}
477	#IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out}
478	else
479	IGCM_sys_Cp ${file_in} ${file_out}
480	fi
481	fi
482	(( i=i+3 ))
483	done
484	fi
485	done
486
487	IGCM_debug_PopStack "IGCM_comp_GetInputSmoothFiles"
488	}
489
490	#=======================================================================
491	function IGCM_comp_GetInputBoundaryFiles
492	{
493	IGCM_debug_PushStack "IGCM_comp_GetInputBoundaryFiles"
494
495	# Debug Print :
496	echo
497	IGCM_debug_Print 1 "IGCM_comp_GetInputBoundaryFiles"
498	echo
499
500	typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_
501	typeset file_in_ file_in file_out_ file_out
502
503	if [ ${Period} = 1 ]; then
504	ListFixBoundary=" "
505	fi
506
507	for comp in ${config_ListOfComponents[*]} ; do
508
509	# Define component
510	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
511	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
512
513	# Debug Print :
514	IGCM_debug_Print 3 "Boundary files ${compname}"
515
516	card=${SUBMIT_DIR}/COMP/${compname}.card
517
518	IGCM_card_DefineArrayFromOption ${card} BoundaryFiles List
519	ListFilesName=${compname}_BoundaryFiles_List
520	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
521
522	if [ X${FileName0} != X${NULL_STR} ] ; then
523	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
524
525	(( i=0 ))
526	until [ $i -ge $NbFiles ]; do
527	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
528	eval file_in=${file_in_}
529	(( i_ = i+1 ))
530	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
531	eval file_out=${file_out_}
532
533	IGCM_sys_IsFileArchived ${file_in}
534	if [ $? = 0 ] ; then
535	IGCM_sys_Get ${file_in} ${file_out}
536	IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out}
537	else
538	IGCM_sys_Cp ${file_in} ${file_out}
539	fi
540
541	(( i=i+2 ))
542	done
543	fi
544
545	# Get non deleted files
546	if [ ${Period} = 1 ]; then
547
548	IGCM_card_DefineArrayFromOption ${card} BoundaryFiles ListNonDel
549	ListFilesName=${compname}_BoundaryFiles_ListNonDel
550	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
551
552	if [ X${FileName0} != X${NULL_STR} ] ; then
553	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
554
555	(( i=0 ))
556	until [ $i -ge $NbFiles ]; do
557	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
558	eval file_in=${file_in_}
559	(( i_ = i+1 ))
560	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
561	eval file_out=${file_out_}
562
563	IGCM_sys_IsFileArchived ${file_in}
564	if [ $? = 0 ] ; then
565	IGCM_sys_Get ${file_in} ${file_out}
566	#IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out}
567	else
568	IGCM_sys_Cp ${file_in} ${file_out}
569	fi
570
571	if [ X${file_out} != X. ] ; then
572	ListFixBoundary=${ListFixBoundary}" "${file_out}
573	else
574	ListFixBoundary=${ListFixBoundary}" "$( basename ${file_in} )
575	fi
576
577	(( i=i+2 ))
578	done
579	fi
580	fi
581	done
582
583	IGCM_debug_PopStack "IGCM_comp_GetInputBoundaryFiles"
584	}
585
586	#=======================================================================
587	function IGCM_comp_DelFixeBoundaryFiles
588	{
589	IGCM_debug_PushStack "IGCM_comp_DelFixeBoundaryFiles"
590
591	# Debug Print :
592	echo
593	IGCM_debug_Print 1 "IGCM_comp_DelFixeBoundaryFiles"
594	echo
595
596	ls -l ${ListFixBoundary}
597	rm -f ${ListFixBoundary}
598
599	IGCM_debug_PopStack "IGCM_comp_DelFixeBoundaryFiles"
600	}
601
602	#=======================================================================
603	function IGCM_comp_GetInputParametersFiles
604	{
605	IGCM_debug_PushStack "IGCM_comp_GetInputParametersFiles"
606
607	# Debug Print :
608	echo
609	IGCM_debug_Print 1 "IGCM_comp_GetInputParametersFiles"
610	echo
611
612	typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ file_in file_out
613	for comp in ${config_ListOfComponents[*]} ; do
614	# Define component
615	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
616	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
617
618	# Initialize array hosting file_def and field_def files to check and/or modify
619	unset FieldDef
620	unset FileDef
621
622	# Debug Print :
623	IGCM_debug_Print 3 "Parameters ${compname}"
624
625	card=${SUBMIT_DIR}/COMP/${compname}.card
626
627	IGCM_card_DefineArrayFromOption ${card} ParametersFiles List
628	ListFilesName=${compname}_ParametersFiles_List
629	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
630
631	if [ X${FileName0} != X${NULL_STR} ] ; then
632	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
633
634	(( i=0 ))
635	until [ $i -ge $NbFiles ]; do
636	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
637	eval file_in=${file_in_}
638	(( i_ = i+1 ))
639	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
640	eval file_out=${file_out_}
641
642	IGCM_sys_Cp ${file_in} ${file_out}
643	IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out}
644	IGCM_comp_PrepareXiosFiles ${file_in} ${file_out}
645
646	(( i=i+2 ))
647	done
648	fi
649
650	done
651
652	IGCM_debug_PopStack "IGCM_comp_GetInputParametersFiles"
653	}
654
655	#=======================================================================
656	function IGCM_comp_GetInputRestartFiles
657	{
658	IGCM_debug_PushStack "IGCM_comp_GetInputRestartFiles"
659
660	# Debug Print :
661	echo
662	IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles"
663	echo
664
665	typeset Date_tmp Date_r Path_r do_start CompOldName Path_OUT Path_BUF
666	typeset Buffered Archived Tared PotentialTarFile IsMatching TarFileFound
667	typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_
668	typeset file_in file_out file_in_ file_out_ file_in_Name
669	typeset -Z4 j4
670	#BASH declare j4
671
672	IsMatching=""
673
674	for comp in ${config_ListOfComponents[*]} ; do
675	# Define component
676	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
677	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
678	#
679	card=${SUBMIT_DIR}/COMP/${compname}.card
680	#
681	IGCM_card_DefineArrayFromOption ${card} RestartFiles List
682	ListFilesName=${compname}_RestartFiles_List
683	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
684
685	# Debug Print :
686	IGCM_debug_Print 3 "restart ${compname}"
687
688	if ( ${FirstInitialize} ) ; then
689
690	if ( [ "${config_Restarts_OverRule}" = "y" ] \|\| [ "${config_Restarts_OverRule}" = "Y" ] ) ; then
691	# Adhoc exception for CMIP6 : exclude XIOS from the restart overrule mechanism.
692	if ( [ X${comp} = XIOS ] ) && ( [ X"$( echo ${config_UserChoices_ExpType} \| grep CMIP6 )" != "X" ] \|\| [ X${config_Post_dr2xmlIPSL} = XTRUE ] ) ; then
693	CompOldName=IOS
694	config_IOS_Restart="n"
695	do_start="n"
696	config_IOS_RestartDate=-1
697	config_IOS_RestartJobName=${NULL_STR}
698	config_IOS_RestartPath=${NULL_STR}
699	else
700	eval config_${comp}_Restart="y"
701	eval config_${comp}_RestartDate=${config_Restarts_RestartDate}
702	eval config_${comp}_RestartJobName=${config_Restarts_RestartJobName}
703	eval config_${comp}_RestartPath=${config_Restarts_RestartPath}
704	eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1
705	eval CompOldName=${comp}
706	fi
707	else
708	# Read component Restarts parameters
709	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart
710	eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1
711
712	if [ "${do_start}" = "y" ] ; then
713	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartDate
714	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartJobName
715	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartPath
716	else
717	eval config_${comp}_RestartDate=-1
718	eval config_${comp}_RestartJobName=${NULL_STR}
719	eval config_${comp}_RestartPath=${NULL_STR}
720	fi
721
722	eval CompOldName=\${config_${comp}_OldName}
723	if [ X${CompOldName} = X ] ; then
724	eval CompOldName=${comp}
725	fi
726
727	# Reinitialize IsMatching to allow searching for a different tar file for each component.
728	IsMatching=""
729	TarFileFound=""
730	fi
731
732	if [ "${do_start}" = "y" ] ; then
733
734	# Restore Restarts files
735	#-----------------------
736	if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then
737	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
738
739	(( i=1 ))
740	until [ $i -gt $NbFiles ]; do
741	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
742	eval file_in=${file_in_}
743	(( i_ = i+1 ))
744	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
745	eval file_out=${file_out_}
746
747	eval Date_tmp=\${config_${comp}_RestartDate}
748	Date_r=$( IGCM_date_ConvertFormatToGregorian ${Date_tmp} )
749	# will be re-use
750	eval RestartPath=\${config_${comp}_RestartPath}
751	eval RestartJobName=\${config_${comp}_RestartJobName}
752	#
753	Path_r=${RestartPath}/${RestartJobName}/${CompOldName}/Restart
754	file_in_Name=${RestartJobName}_${Date_r}_${file_in}
755
756	extension_in=$( echo ${file_in_Name##*.} )
757	extension_out=$( echo ${file_out##*.} )
758
759	generic_restart_file_name_in=$( basename ${file_in_Name} .${extension_in} )
760	generic_restart_file_name_out=$( basename ${file_out} .${extension_out} )
761
762	Path_OUT=${Path_r}/${generic_restart_file_name_in}
763
764	if [ $( IGCM_sys_TestFileBuffer ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then
765	IGCM_debug_Print 3 "Buffered restart ${Path_OUT}*.${extension_in} "
766	Buffered=true
767	Archived=false
768	Tared=false
769	nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_OUT}_????.${extension_in})
770	elif [ $( IGCM_sys_TestFileArchive ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then
771	IGCM_debug_Print 3 "Archived restart ${Path_OUT}*.${extension_in}"
772	Buffered=false
773	Archived=true
774	Tared=false
775	nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.${extension_in})
776	else
777	IGCM_debug_Print 3 "No restart file in the buffer nor in the archive directory"
778	IGCM_debug_Print 3 "${Path_OUT}*.${extension_in} do not exist"
779	IGCM_debug_Print 3 "Restart files will now be searched for in : ${RestartPath}/${RestartJobName}/RESTART"
780	Buffered=false
781	Archived=false
782	Tared=true
783	# Look after the tar file we want if we did not found it already
784	if [ X${IsMatching} = X ] ; then
785	IGCM_sys_TestDirArchive ${RestartPath}/${RestartJobName}/RESTART
786	if [ $? ] ; then
787	for PotentialTarFile in $( IGCM_sys_RshArchive "find ${RestartPath}/${RestartJobName}/RESTART -name "${RestartJobName}_restart.tar" -print" ) ; do
788	IsMatching=$( echo ${PotentialTarFile##*/} \| \
789	sed "s:_restart::" \| \
790	sed "s:^${RestartJobName}_::" \| \
791	sed "s:\.tar$::" \| \
792	gawk -F_ -v restartdate=${Date_r} \
793	'{if (($1 <= restartdate) && ($2 >= restartdate)) {print $1"_"$2}}' )
794	if [ ! X${IsMatching} = X ] ; then
795	TarFileFound=${PotentialTarFile}
796	break
797	fi
798	done
799	fi
800	# Stop here if nothing has been found
801	if [ X${TarFileFound} = X ] ; then
802	IGCM_debug_Print 3 "Restart files were not found!"
803	IGCM_debug_Print 3 "Restart files have been searched for in buffer and archive directory."
804	IGCM_debug_Print 3 "They have been searched for in packed and unpacked format."
805	IGCM_debug_Exit "Please double check restart settings in config.card"
806	IGCM_debug_Verif_Exit
807	fi
808	fi
809	IGCM_sys_PrepareTaredRestart ${TarFileFound}
810	TarFileLocation=$( basename ${TarFileFound} )
811	IGCM_debug_Print 1 "tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in}"
812	tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in}
813	nb_restart_file=$( IGCM_sys_CountFileBuffer ${comp}_${generic_restart_file_name_in}_????.${extension_in} )
814	fi
815
816	if [ ${nb_restart_file} -gt 1 ] ; then
817	j=0 # BASH LINE NOT NEEDED
818	# BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do
819	until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED
820	j4=${j} # BASH LINE NOT NEEDED
821	if [ X${Buffered} = Xtrue ] ; then
822	IGCM_sys_GetBuffer ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out}
823	elif [ X${Archived} = Xtrue ] ; then
824	IGCM_sys_Get ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out}
825	elif [ X${Tared} = Xtrue ] ; then
826	IGCM_sys_Mv ${comp}_${generic_restart_file_name_in}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out}
827	fi
828	(( j=j+1 )) #BASH LINE NOT NEEDED
829	done
830
831	# OCE SPECIFIC TO REBUILD RESTART WHEN NUMBER OF RESTART FILES DONT MATCH MPI PROCESS
832	if [ X${OCE_PROC_MPI} != X ] ; then
833	if [ ${OCE_PROC_MPI} -ne ${nb_restart_file} ] ; then
834	IGCM_sys_rebuild_nemo ${generic_restart_file_name_out} ${nb_restart_file} ${extension_out} ${generic_restart_file_name_out}_????.${extension_out}
835	IGCM_sys_Rm ${generic_restart_file_name_out}_????.${extension_out}
836	fi
837	fi
838	else
839	if [ X${Buffered} = Xtrue ] ; then
840	IGCM_sys_GetBuffer ${Path_r}/${file_in_Name} ${file_out}
841	elif [ X${Archived} = Xtrue ] ; then
842	IGCM_sys_Get ${Path_r}/${file_in_Name} ${file_out}
843	elif [ X${Tared} = Xtrue ] ; then
844	IGCM_sys_Mv ${comp}_${file_in_Name} ${file_out}
845	fi
846	fi
847	(( i=i+3 ))
848	done
849	else
850	if [ X${FileName0} != XNONE ] ; then
851	IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}."
852	else
853	IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}."
854	fi
855	fi
856	fi
857	elif ( [ ${Period} -eq 1 ] && [ ${DRYRUN} -eq 0 ] ) ; then
858	# if not FirstInitialize and first loop of this job
859
860	# Restore Restarts files
861	#-----------------------
862	if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then
863	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
864
865	(( i=1 ))
866	until [ $i -gt $NbFiles ]; do
867	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
868	eval file_in=${file_in_}
869	(( i_ = i+1 ))
870	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
871	eval file_out=${file_out_}
872
873	file_in_Name=${config_UserChoices_JobName}_${LastPeriodDateEnd}_${file_in}
874
875	extension_in=$( echo ${file_in_Name##*.} )
876	extension_out=$( echo ${file_out##*.} )
877
878	generic_restart_file_name_in=$( basename ${file_in_Name} .${extension_in} )
879	generic_restart_file_name_out=$( basename ${file_out} .${extension_out} )
880
881	eval Path_BUF=\${R_BUF_${comp}_R}/${generic_restart_file_name_in}
882	eval Path_OUT=\${R_OUT_${comp}_R}/${generic_restart_file_name_in}
883
884	if [ $( IGCM_sys_TestFileBuffer ${Path_BUF}*.${extension_in} ; echo $? ) = 0 ] ; then
885	IGCM_debug_Print 3 "Buffered restart ${Path_BUF}*.${extension_in}"
886	Buffered=true
887	Archived=false
888	Tared=false
889	nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_BUF}_????.${extension_in})
890	elif [ $( IGCM_sys_TestFileArchive ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then
891	IGCM_debug_Print 3 "Archived restart ${Path_OUT}*.${extension_in}"
892	Buffered=false
893	Archived=true
894	Tared=false
895	nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.${extension_in})
896	else
897	IGCM_debug_Print 3 "No restart file in the buffer nor in the archive directory"
898	IGCM_debug_Print 3 "Restart files will now be searched for in : ${R_SAVE}/RESTART"
899	Buffered=false
900	Archived=false
901	Tared=true
902	# Look after the tar file we want if we did not found it already
903	if [ X${IsMatching} = X ] ; then
904	for PotentialTarFile in $( IGCM_sys_RshArchive "find ${R_SAVE}/RESTART -name "${config_UserChoices_JobName}_*_restart.tar" -print" ) ; do
905	IsMatching=$( echo ${PotentialTarFile##*/} \| sed "s:^${config_UserChoices_JobName}_::" \| sed "s:\.restart\.tar$::" \| gawk -F_ -v restartdate=${LastPeriodDateEnd} '{if (($1 < restartdate) && ($2 >= restartdate)) {print $1"_"$2}}' )
906	if [ ! X${IsMatching} = X ] ; then
907	TarFileFound=${PotentialTarFile}
908	break
909	fi
910	done
911	fi
912	# Stop here if nothing has been found
913	if [ X${TarFileFound} = X ] ; then
914	IGCM_debug_Print 3 "Restart files were not found!"
915	IGCM_debug_Print 3 "Restart files have been searched for in buffer and archive directory."
916	IGCM_debug_Print 3 "They have been searched for in packed and unpacked format."
917	IGCM_debug_Exit "Please double check restart settings in config.card"
918	IGCM_debug_Verif_Exit
919	fi
920	IGCM_sys_PrepareTaredRestart ${TarFileFound}
921	TarFileLocation=$( basename ${TarFileFound} )
922	IGCM_debug_Print 1 "tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in}"
923	tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in}
924	nb_restart_file=$( IGCM_sys_CountFileBuffer ${comp}_${generic_restart_file_name_in}_????.${extension_in} )
925	fi
926
927	if [ ${nb_restart_file} -gt 1 ] ; then
928	j=0 # BASH LINE NOT NEEDED
929	#BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do
930	until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED
931	j4=${j} # BASH LINE NOT NEEDED
932	if [ X${Buffered} = Xtrue ] ; then
933	IGCM_sys_GetBuffer ${Path_BUF}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out}
934	elif [ X${Archived} = Xtrue ] ; then
935	IGCM_sys_Get ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out}
936	elif [ X${Tared} = Xtrue ] ; then
937	IGCM_sys_Mv ${comp}_${generic_restart_file_name_in}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out}
938	fi
939	(( j=j+1 )) # BASH LINE NOT NEEDED
940	done
941	else
942	if [ X${Buffered} = Xtrue ] ; then
943	eval IGCM_sys_GetBuffer \${R_BUF_${comp}_R}/${file_in_Name} ${file_out}
944	elif [ X${Archived} = Xtrue ] ; then
945	eval IGCM_sys_Get \${R_OUT_${comp}_R}/${file_in_Name} ${file_out}
946	elif [ X${Tared} = Xtrue ] ; then
947	IGCM_sys_Mv ${comp}_${file_in_Name} ${file_out}
948	fi
949	fi
950	(( i=i+3 ))
951	done
952	else
953	if [ X${FileName0} != XNONE ] ; then
954	IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}."
955	else
956	IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}."
957	fi
958	fi
959	fi
960	done
961
962	NbFiles=$( ls * 2> /dev/null \| wc -l )
963	if [ ${NbFiles} -gt 0 ] ; then
964	IGCM_sys_Chmod u+rw *
965	fi
966
967	IGCM_debug_PopStack "IGCM_comp_GetInputRestartFiles"
968	}
969
970	#=======================================================================
971	function IGCM_comp_GetInputBinaryFiles
972	{
973	IGCM_debug_PushStack "IGCM_comp_GetInputBinaryFiles"
974
975	# Debug Print :
976	echo
977	IGCM_debug_Print 1 "IGCM_comp_GetInputBinaryFiles"
978	echo
979
980	# Clean up previous pass
981	[ -f ${RUN_DIR}/compiler.txt ] && rm -f ${RUN_DIR}/compiler.txt
982
983	typeset comp ExeNameIn ExeNameOut byPass
984	typeset compilerNmbr compilerUnit compilerFull
985	byPass=false
986	for comp in ${config_ListOfComponents[*]} ; do
987	# Define component
988
989	# Copy executable for this component
990	eval ExeNameIn=\${config_Executable_${comp}[0]}
991	eval ExeNameOut=\${config_Executable_${comp}[1]}
992	# Test if missing executable and DRYRUN is set to 0 or 1, then stop!
993	if [ ${DRYRUN} -le 1 ] && [ X${ExeNameIn} != X\"\" ] ; then
994	# The executable is set in config.card and is different from ""
995	# Use eval to expand ExeNameIn if variables are used in the name
996	eval ExeNameIn=${ExeNameIn}
997	if [ ! -f ${R_EXE}/${ExeNameIn} ] ; then
998	IGCM_debug_Exit "IGCM_comp_GetInputBinaryFiles missing executable ${ExeNameIn}"
999	fi
1000	fi
1001
1002	if [ ${Period} -eq 1 ] && [ -f ${R_EXE}/${ExeNameIn} ] ; then
1003	eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut}
1004	if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then
1005	eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut}
1006	fi
1007	elif [ -f ${R_EXE}/${ExeNameIn} ] && [ ! -f ${RUN_DIR}/${ExeNameOut} ] ; then
1008	eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut}
1009	if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then
1010	eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut}
1011	fi
1012	fi
1013
1014	if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then
1015	# Get the compiler version
1016	compilerFull=$( strings ${RUN_DIR}/${ExeNameOut} \| grep "RTL Message Catalog" \| gawk '{print $6}' \| gawk -F. '{print $1}' )
1017	compilerVersion=$( strings ${RUN_DIR}/${ExeNameOut} \| grep "RTL Message Catalog" \| gawk '{print $6}' \| gawk -F. '{print $1}' )
1018	# Save it
1019	echo $compilerFull >> ${RUN_DIR}/compiler.txt
1020	[ X${compilerFull} = X ] && byPass=true
1021	IGCM_debug_Print 1 "${RUN_DIR}/${ExeNameOut} has been compiled with ${compilerFull}"
1022	IGCM_debug_Print 1 "Compiler is ${compilerVersion}"
1023	fi
1024	done
1025
1026	compilerNmbr=$( cat ${RUN_DIR}/compiler.txt \| wc -l )
1027	compilerUnit=$( cat ${RUN_DIR}/compiler.txt \| sort \| uniq -c )
1028
1029	if ( [ ${compilerNmbr} -ne ${compilerUnit} ] && [ ! X${byPass} = Xtrue ] ); then
1030	IGCM_debug_Exit "Binaries has not been compiled with the same compiler version"
1031	fi
1032
1033
1034	IGCM_debug_PopStack "IGCM_comp_GetInputBinaryFiles"
1035	}
1036
1037	#=======================================================================
1038	function IGCM_comp_PeriodStart
1039	{
1040	IGCM_debug_PushStack "IGCM_comp_PeriodStart"
1041
1042	# Debug Print :
1043	echo
1044	IGCM_debug_Print 1 "IGCM_comp_PeriodStart"
1045	echo
1046
1047	typeset ExeNameIn ExeNameOut
1048	typeset comp compname comptagname
1049	for comp in ${config_ListOfComponents[*]} ; do
1050	# Define component
1051	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
1052	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
1053
1054	# Copy executable for this component
1055	eval ExeNameIn=\${config_Executable_${comp}[0]}
1056	eval ExeNameIn=${ExeNameIn}
1057	eval ExeNameOut=\${config_Executable_${comp}[1]}
1058
1059	# Debug Print
1060	IGCM_debug_Print 3 "PeriodStart ${compname} Driver Function (if any)."
1061	# UPDATE component
1062	${comp}_PeriodStart 2> /dev/null
1063
1064	done
1065
1066	IGCM_debug_PopStack "IGCM_comp_PeriodStart"
1067	}
1068
1069
1070
1071	#=======================================================================
1072	function IGCM_comp_modifyFile
1073	{
1074	#
1075	# syntax: IGCM_comp_modifyFile filein key [value]
1076	#
1077	# For example : IGCM_comp_modifyFile metrics_template.py case_id \'SE_${YEARS}\'
1078	#
1079	# This function is used to replace a pattern in a file for a specific variable.
1080	#
1081	# Arguments:
1082	# - filein : the file in run directory in which the variable should be set
1083	# - key : the variable to modify
1084	# - value : the value to set the key equal to
1085	#
1086	IGCM_debug_PushStack "IGCM_comp_modifyFile"
1087
1088	typeset filein key value pattern
1089
1090	# Set local variables and test the arguments
1091	if [ $# = 3 ] ; then
1092	# Normal case with 3 arguments
1093	filein=$1 ; key=$2 ; value=$3
1094	else
1095	IGCM_debug_Exit "IGCM_comp_modifyFile: Bad number of arguments."
1096	IGCM_debug_PopStack "IGCM_comp_modifyFile"
1097	return
1098	fi
1099	IGCM_debug_Print 1 "Entering IGCM_comp_modifyFile with arguments: ${filein} ${key} ${value}"
1100
1101	# Test if the file exist
1102	if [ ! -f ${filein} ] ; then
1103	IGCM_debug_Exit "IGCM_comp_modifyFile: ${filein} does not exist."
1104	IGCM_debug_PopStack "IGCM_comp_modifyFile"
1105	return
1106	fi
1107
1108	# Read the line with key in the file without the comments
1109	pattern=$( grep "^ ${key} =" ${filein} \| sed -e "s% \!.%%" )
1110
1111	# Verify the existance of the pattern
1112	if [ X"${pattern}" = X ] ; then
1113	# Variable key is not set in filein, stop.
1114	IGCM_debug_Exit "IGCM_comp_modifyFile : Variable ${key} is not set in correct file. It should be set in ${filein}."
1115	IGCM_debug_PopStack "IGCM_comp_modifyFile"
1116	return
1117	fi
1118
1119	# Now change key in filein
1120	#sed -e "s:${pattern}:${key}=${value}:" ${filein} > ${filein}.tmp
1121	sed -e "s:^ ${key} =.*:${key}=${value}:" ${filein} > ${filein}.tmp
1122	IGCM_debug_Print 1 "IGCM_comp_modifyFile: In ${filein} set ${key}=${value}"
1123	\mv ${filein}.tmp ${filein}
1124
1125	IGCM_debug_PopStack "IGCM_comp_modifyFile"
1126	}
1127
1128	#=======================================================================
1129	function IGCM_comp_modifyDefFile
1130	{
1131	#
1132	# syntax: IGCM_comp_modifyDefFile type filein key [value]
1133	#
1134	# For example : IGCM_comp_modifyDefFile blocker run.def day_step 1200
1135	#
1136	# This function is used to modify a parameter file for a specific variable.
1137	# The file must be a ".def" file, i.e. with IOIPSL parameter file syntax.
1138	# This function can be used in the comp.driver files for the components.
1139	#
1140	# Arguments:
1141	# - type : first argument must be blocker, nonblocker or force
1142	# For "blocker" case, the variable must be attributed the keyworld AUTO
1143	# otherwise this function will exit.
1144	# For "nonblocker" case, the user can remove or modify the variable. For
1145	# this case, as long as AUTO is not set, no modification will be done.
1146	# For "force" case, the variable will be modified even if it is not set to AUTO
1147	# - filein : the file in run directory of .def type in which the variable should be set
1148	# - key : the variable to modify
1149	# - value : the value to set the key equal to, optional. If value is not set or if
1150	# value=DEFAULT, then a default value must be given in filein using syntax :
1151	# key= AUTO : DEFAULT=def_value
1152	#
1153	IGCM_debug_PushStack "IGCM_comp_modifyDefFile"
1154
1155	typeset type filein key value
1156	typeset filelist nb_occ modify
1157
1158	# Set local variables and test the arguments
1159	if [ $# = 4 ] ; then
1160	# Normal case with 4 arguments
1161	type=$1 ; filein=$2 ; key=$3 ; value=$4
1162	elif [ $# = 3 ] ; then
1163	# Normal case with 3 arguments
1164	type=$1 ; filein=$2 ; key=$3; value="DEFAULT"
1165	else
1166	IGCM_debug_Exit "IGCM_comp_modifyDefFile: Bad number of arguments."
1167	IGCM_debug_PopStack "IGCM_comp_modifyDefFile"
1168	return
1169	fi
1170	IGCM_debug_Print 1 "Entering IGCM_comp_modifyDefFile with arguments: ${type} ${filein} ${key} ${value}"
1171
1172	# Test if first argument is correct
1173	if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then
1174	IGCM_debug_Exit "IGCM_comp_modifyDefFile: Error in first argument must be blocker, nonblocker or force"
1175	IGCM_debug_PopStack "IGCM_comp_modifyDefFile"
1176	return
1177	fi
1178
1179	# Test if the file exist.
1180	# Exit with error if the file does not exist for the case blocker or force.
1181	# Only return for the case nonblocker.
1182	if [ ! -f ${filein} ] ; then
1183	if [ ${type} = blocker ] \|\| [ ${type} = force ] ; then
1184	IGCM_debug_Exit "IGCM_comp_modifyDefFile: ${filein} does not exist."
1185	else
1186	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${filein} does not exist. Nothing will be done for this file."
1187	fi
1188	IGCM_debug_PopStack "IGCM_comp_modifyDefFile"
1189	return
1190	fi
1191
1192	# Define list of files to test using all files with suffix .def (except used*.def)
1193	filelist=$( ls *def \| grep -v used )
1194
1195	# Count number of occurances for the key in all files
1196	nb_occ=$( grep -w ${key} ${filelist} \| grep -v "#" \| wc -l )
1197
1198	# Test if key is set several times
1199	if [ ${nb_occ} -gt 1 ] ; then
1200	IGCM_debug_Exit "IGCM_comp_modifyDefFile : Error in ${filein}: Variable=${key} is set ${nb_occ} times"
1201	IGCM_debug_PopStack "IGCM_comp_modifyDefFile"
1202	return
1203	fi
1204
1205	# Treatement according to different cases
1206	if [ ${nb_occ} -eq 0 ] && [ ${type} = blocker ] ; then
1207	# Stop if the key is never set and the function is blocker
1208	IGCM_debug_Exit "IGCM_comp_modifyDefFile : Error in ${filein}: Variable=${key} has been removed but this function is blocker. "
1209	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: restore ${filein} for variable ${key}."
1210	elif [ ${nb_occ} -eq 0 ] && [ ${type} = nonblocker ] ; then
1211	# The key is not set but it is a nonblocker call so nothing is done.
1212	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key} is not set in ${filein}. This is a nonblocker call so nothing is done."
1213	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: Default value for ${key} from the model will be used."
1214	modify=no
1215	elif [ $( grep ${key} ${filein} \| grep -v "\#" \|wc -l ) = 0 ] ; then
1216	# Variable key is not set in filein, stop.
1217	IGCM_debug_Exit "IGCM_comp_modifyDefFile : Variable ${key} is not set in correct file. It should be set in ${filein}."
1218	fi
1219
1220	# Check if AUTO is set in the filein on the same line as the key variable
1221	if [ $( grep -w ${key} ${filein} \| grep -v "\#" \| grep AUTO \| wc -l ) = 1 ] ; then
1222	# Modification will be done for all cases
1223	modify=yes
1224	else
1225	# The variable was not set to AUTO
1226	if [ ${type} = blocker ] ; then
1227	# Exit because this is a blocker call
1228	IGCM_debug_Exit "IGCM_comp_modifyDefFile : The variable ${key} cannot be modified. It should be set to AUTO."
1229	IGCM_debug_PopStack "IGCM_comp_modifyDefFile"
1230	return
1231	elif [ ${type} = nonblocker ] ; then
1232	# Do nothing. Suppose that the user did set the variable correct
1233	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key} is set by the user. Nothing done."
1234	modify=no
1235	elif [ ${type} = force ] ; then
1236	# Force modification
1237	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile : Variabl=${key} was not set to AUTO. Modification will be forced."
1238	modify=yes
1239	fi
1240	fi
1241
1242	# Do the modifcation now
1243	if [ ${modify} = yes ] ; then
1244
1245	# For option DEFAULT, read default value from file.
1246	if [ X"${value}" = XDEFAULT ] \|\| [ X"${value}" = X ] ; then
1247	# Case to set DEFAULT value
1248	# Read default value from filein
1249	value=$( grep -w ${key} ${filein} \| grep -v "\#" \| awk -F"DEFAULT *=" '{print $2}')
1250
1251	if [ X"${value}" = X ] ; then
1252	IGCM_debug_Exit "IGCM_comp_modifyDefFile : The variable ${key} needs a DEFAULT value in ${filein}."
1253	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: The syntax in ${filein} should be:"
1254	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key}=_AUTO_:DEFAULT=def_value"
1255	IGCM_debug_PopStack "IGCM_comp_modifyDefFile"
1256	return
1257	fi
1258	fi
1259
1260	# Now change key in filein
1261	sed -e "s/^${key}\ =./${key}= ${value}/" ${filein} > ${filein}.tmp
1262	IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: In ${filein} set ${key}=${value}"
1263	\mv ${filein}.tmp ${filein}
1264	fi
1265	IGCM_debug_PopStack "IGCM_comp_modifyDefFile"
1266	}
1267
1268	#=======================================================================
1269	function IGCM_comp_modifyNamelist
1270	{
1271	#
1272	# syntax: IGCM_comp_modifyNamelist type filein key [value]
1273	#
1274	# For example : IGCM_comp_modifyNamelist blocker run.def day_step 1200
1275	#
1276	# This function is used to modify a parameter file for a specific variable.
1277	# The file must be a "namelist" file, i.e. with fortran namelist syntax.
1278	# This function can be used in the comp.driver files for the components.
1279	#
1280	# Arguments:
1281	# - type : first argument must be blocker, nonblocker or force
1282	# For "blocker" case, the variable must be attributed the keyworld AUTO
1283	# otherwise this function will exit.
1284	# For "nonblocker" case, the user can remove or modify the variable. For
1285	# this case, as long as AUTO is not set, no modification will be done.
1286	# For "force" case, the variable will be modified even if it is not set to AUTO
1287	# - filein : the file in run directory of .def type in which the variable should be set
1288	# - key : the variable to modify
1289	# - value : the value to set the key equal to, optional. If value is not set or if
1290	# value=DEFAULT, then a default value must be given in filein using syntax :
1291	# key= AUTO : DEFAULT=def_value
1292	#
1293	IGCM_debug_PushStack "IGCM_comp_modifyNamelist"
1294
1295	typeset type filein key value pattern modify
1296
1297	# Set local variables and test the arguments
1298	if [ $# = 4 ] ; then
1299	# Normal case with 4 arguments
1300	type=$1 ; filein=$2 ; key=$3 ; value=$4
1301	elif [ $# = 3 ] ; then
1302	# Normal case with 3 arguments
1303	type=$1 ; filein=$2 ; key=$3; value="DEFAULT"
1304	else
1305	IGCM_debug_Exit "IGCM_comp_modifyNamelist: Bad number of arguments."
1306	IGCM_debug_PopStack "IGCM_comp_modifyNamelist"
1307	return
1308	fi
1309	IGCM_debug_Print 1 "Entering IGCM_comp_modifyNamelist with arguments: ${type} ${filein} ${key} ${value}"
1310
1311	# Test if first argument is correct
1312	if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then
1313	IGCM_debug_Exit "IGCM_comp_modifyNamelist: Error in first argument must be blocker, nonblocker or force"
1314	IGCM_debug_PopStack "IGCM_comp_modifyNamelist"
1315	return
1316	fi
1317
1318	# Test if the file exist.
1319	# Exit with error if the file does not exist for the case blocker or force.
1320	# Only return for the case nonblocker.
1321	if [ ! -f ${filein} ] ; then
1322	if [ ${type} = blocker ] \|\| [ ${type} = force ] ; then
1323	IGCM_debug_Exit "IGCM_comp_modifyNamelist: ${filein} does not exist."
1324	else
1325	IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: ${filein} does not exist. Nothing will be done for this file."
1326	fi
1327	IGCM_debug_PopStack "IGCM_comp_modifyNamelist"
1328	return
1329	fi
1330
1331	# Read the line with key in the file without the comments
1332	pattern=$( grep "^ ${key} =" ${filein} \| sed -e "s% \!.%%" )
1333
1334	# Verify the existance of the pattern
1335	if [ X"$pattern" = X ] ; then
1336	# Variable key is not set in filein, stop.
1337	IGCM_debug_Exit "IGCM_comp_modifyNamelist : Variable ${key} is not set in correct file. It should be set in ${filein}."
1338	IGCM_debug_PopStack "IGCM_comp_modifyNamelist"
1339	return
1340	fi
1341
1342	# Check if the variable is set to AUTO in the filein
1343	if [ $( echo $pattern \| grep AUTO \| wc -l ) = 1 ] ; then
1344	# Modification will be done for all cases
1345	modify=yes
1346	else
1347	# The variable was not set to AUTO
1348	if [ ${type} = blocker ] ; then
1349	# Exit because this is a blocker call
1350	IGCM_debug_Exit "IGCM_comp_modifyNamelist : The variable ${key} cannot be modified. It should be set to AUTO."
1351	IGCM_debug_PopStack "IGCM_comp_modifyNamelist"
1352	return
1353	elif [ ${type} = nonblocker ] ; then
1354	# Do nothing. Suppose that the user did set the variable correct
1355	IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: ${key} is set by the user. Nothing done."
1356	modify=no
1357	elif [ ${type} = force ] ; then
1358	# Force modification
1359	IGCM_debug_Print 1 "IGCM_comp_modifyNamelist : Variabl=${key} was not set to AUTO. Modification will be forced."
1360	modify=yes
1361	fi
1362	fi
1363
1364	# Do the modifcation now
1365	if [ ${modify} = yes ] ; then
1366
1367	# For option DEFAULT, read default value from file.
1368	if [ X"${value}" = XDEFAULT ] \|\| [ X"${value}" = X ] ; then
1369	# Case to set DEFAULT value
1370	# Read default value from filein
1371	value=$( echo $pattern \| awk -F"DEFAULT *=" '{print $2}')
1372
1373	if [ X"${value}" = X ] ; then
1374	IGCM_debug_Exit "IGCM_comp_modifyNamelist : The variable ${key} needs a DEFAULT value in ${filein}."
1375	IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: The syntax in ${filein} should be:"
1376	IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: ${key}=_AUTO_:DEFAULT=def_value"
1377	IGCM_debug_PopStack "IGCM_comp_modifyNamelist"
1378	return
1379	fi
1380	fi
1381
1382	# Now change key in filein
1383	sed -e "s/${pattern}/ ${key}=${value}/" ${filein} > ${filein}.tmp
1384	IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: In ${filein} set ${key}=${value}"
1385	\mv ${filein}.tmp ${filein}
1386	fi
1387	IGCM_debug_PopStack "IGCM_comp_modifyNamelist"
1388	}
1389
1390	#=======================================================================
1391	function IGCM_comp_modifyXmlFile
1392	{
1393	#
1394	# syntax: IGCM_comp_modifyXmlFile type filein keyid keyattrib value
1395	#
1396	# For example : IGCM_comp_modifyXmlFile force file_def_orchidee.xml sechiba2 enabled .TRUE.
1397	# or IGCM_comp_modifyXmlFile blocker iodef.xml using_server NONE false
1398	#
1399	# This function is used to modify the value for a specific attribute and variable id.
1400	# The file must be a valid xml file.
1401	# This function can be used in the comp.driver files for the components.
1402	#
1403	# Arguments:
1404	# - type : first argument must be blocker, nonblocker or force.
1405	# For "blocker" case, the variable must be attributed the keyworld AUTO
1406	# otherwise this function will exit.
1407	# For "nonblocker" case, the user can remove or modify the variable. For
1408	# this case, as long as AUTO is not set, no modification will be done.
1409	# For "force" case, the variable will be modified even if it is not set to AUTO
1410	# - filein : the file in run directory of .xml type in which the variable should be set
1411	# - keyid : the variable to modify
1412	# - keyattrib : the attribute name to modify. If NONE, then the variable itself will be modified
1413	# - value : the value to set in the filein
1414	#
1415	IGCM_debug_PushStack "IGCM_comp_modifyXmlFile"
1416
1417	typeset type filein keyid keyattrib value modify
1418
1419	# Set local variables and test the arguments
1420	if [ $# = 5 ] ; then
1421	# Normal case with 4 arguments
1422	type=$1 ; filein=$2 ; keyid=$3 ; keyattrib=$4 ; value=$5
1423	else
1424	IGCM_debug_Exit "IGCM_comp_modifyXmlFile: Bad number of arguments."
1425	IGCM_debug_PopStack "IGCM_comp_modifyXmlFile"
1426	return
1427	fi
1428	IGCM_debug_Print 1 "Entering IGCM_comp_modifyXmlFile with arguments: type=${type} file=${filein}, id=${keyid} attribute=${keyattrib}, value=${value}"
1429
1430	# Test if first argument is correct
1431	if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then
1432	IGCM_debug_Exit "IGCM_comp_modifyXmlFile: Error in first argument must be blocker, nonblocker or force"
1433	IGCM_debug_PopStack "IGCM_comp_modifyXmlFile"
1434	return
1435	fi
1436
1437	# Test if the file exist.
1438	# Exit with error if the file does not exist for the case blocker or force.
1439	# Only return for the case nonblocker.
1440	if [ ! -f ${filein} ] ; then
1441	if [ ${type} = blocker ] \|\| [ ${type} = force ] ; then
1442	IGCM_debug_Exit "IGCM_comp_modifyXmlFile: ${filein} does not exist."
1443	else
1444	IGCM_debug_Print 1 "IGCM_comp_modifyXmlFile: ${filein} does not exist. Nothing will be done for this file."
1445	fi
1446	IGCM_debug_PopStack "IGCM_comp_modifyXmlFile"
1447	return
1448	fi
1449
1450	# Test if keyid is set in filein. If not exit for case all cases(blocker, force) except nonblocker.
1451	if [ $( grep -w ${keyid} ${filein} \| wc -l ) = 0 ] ; then
1452	if [ ${type} = nonblocker ] ; then
1453	# This is a nonblocker case, print warning but do nothing else
1454	IGCM_debug_Print 1 "IGCM_comp_modifyXmlFile: ${keyid} is not set in ${filein}. This is a nonblocker call so nothing is done."
1455	else
1456	# This is a blocker or force case : stop now
1457	IGCM_debug_Exit "IGCM_comp_modifyXmlFile : ${keyid} is not set in the file. Bad syntax of ${filein} file."
1458	IGCM_debug_PopStack "IGCM_comp_modifyXmlFile"
1459	return
1460	fi
1461	fi
1462
1463	# Check if AUTO is set on the same line as keyid and keyattrib
1464	if [ $( grep -w ${keyid} ${filein} \| grep AUTO \| wc -l ) = 1 ] ; then
1465	# Modification will be done
1466	modify=yes
1467	else
1468	if [ ${type} = blocker ] ; then
1469	# Exit, the variable must be set to AUTO
1470	IGCM_debug_Exit "IGCM_comp_modifyXmlFile : blocker function. The ${keyattrib} for ${keyid} must be set to AUTO in ${filein}."
1471	IGCM_debug_PopStack "IGCM_comp_modifyXmlFile"
1472	return
1473	elif [ ${type} = nonblocker ] ; then
1474	# Nothing will be done
1475	IGCM_debug_Print 1 "Nonblocker nothing is done for ${filein}, id=${keyid} and attribute ${keyattrib}"
1476	modify=no
1477	elif [ ${type} = force ] ; then
1478	# Force modification
1479	IGCM_debug_Print 1 "IGCM_comp_modifyXmlFile : Attribute=${keyattrib} for id=${keyid} was not set to AUTO. Modification will be forced."
1480	modify=yes
1481	fi
1482	fi
1483
1484	# Do the modifcation now
1485	if [ ${modify} = yes ] ; then
1486	if [ ${keyattrib} = NONE ] ; then
1487	# Case to modify the variable itself
1488	IGCM_debug_Print 1 "Now modify ${filein} for id=${keyid} by setting the variable=${value}"
1489	sed -e "s/\(<[^\"]\"${keyid}\".>\)\([^<]\)\(<[^>]\)/\1${value}\3/" ${filein} > ${filein}.tmp
1490	else
1491	# Check if keyattrib is set on the same line as keyid
1492	if [ $( grep -w ${keyid} ${filein} \| grep ${keyattrib} \| wc -l ) = 1 ] ; then
1493	# Case to modify the attribute value
1494	IGCM_debug_Print 1 "Now modify ${filein} for id=${keyid} by setting attribute to ${keyattrib}=${value}"
1495	sed -e "/id=\"${keyid}\"/s/\(${keyattrib}=\"\)[^\"]*\(\"\)/\1${value}\2/" ${filein} > ${filein}.tmp
1496	else
1497	# Case to add the attribute and its value
1498	IGCM_debug_Print 1 "Now add in ${filein} for id=${keyid} the attribute ${keyattrib} to the value ${value}"
1499	sed -e "/id=\"${keyid}\"/s/\/>/ ${keyattrib}=\"${value}\"\/>/" ${filein} > ${filein}.tmp
1500	fi
1501	fi
1502	\mv ${filein}.tmp ${filein}
1503	fi
1504	IGCM_debug_PopStack "IGCM_comp_modifyXmlFile"
1505	}
1506
1507	#=======================================================================
1508	function IGCM_comp_Update
1509	{
1510	IGCM_debug_PushStack "IGCM_comp_Update"
1511
1512	# Debug Print :
1513	echo
1514	IGCM_debug_Print 1 "IGCM_comp_Update"
1515	echo
1516
1517	typeset comp compname comptagname
1518	for comp in ${config_ListOfComponents[*]} ; do
1519	# Define component
1520	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
1521	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
1522
1523	# Debug Print
1524	IGCM_debug_Print 1 "Update ${compname} Parameter Files."
1525	# UPDATE component
1526	${comp}_Update
1527
1528	# Read TimeSeries information from XML files, prepare TS directories and do modifications in timeseries_def_${compname}.xml
1529	if [ -f timeseries_def_${compname}.xml ]; then
1530	${libIGCM}/libIGCM_post/xios_parser.py tsquery --file timeseries_def_${compname}.xml > ts.temp.${compname}.txt
1531	for line in $( cat ts.temp.${compname}.txt ); do
1532	output_freq=$( echo ${line} \| awk -F "," '{print $1}' \| awk -F "=" '{print $2}' )
1533	id=$( echo ${line} \| awk -F "," '{print $2}' \| awk -F "=" '{print $2}' )
1534	case ${output_freq} in
1535	Y\|y)
1536	eval IGCM_sys_Mkdir \${R_BUF_${comp}_A_Y}
1537	eval IGCM_comp_modifyXmlFile nonblocker timeseries_def_${compname}.xml ${id} ts_prefix \${R_BUF_${comp}_A_Y}/${config_UserChoices_JobName}
1538	;;
1539	MO\|mo)
1540	eval IGCM_sys_Mkdir \${R_BUF_${comp}_A_M}
1541	eval IGCM_comp_modifyXmlFile nonblocker timeseries_def_${compname}.xml ${id} ts_prefix \${R_BUF_${comp}_A_M}/${config_UserChoices_JobName}
1542	;;
1543	D\|d)
1544	eval IGCM_sys_Mkdir \${R_BUF_${comp}_A_D}
1545	eval IGCM_comp_modifyXmlFile nonblocker timeseries_def_${compname}.xml ${id} ts_prefix \${R_BUF_${comp}_A_D}/${config_UserChoices_JobName}
1546	;;
1547	S\|s)
1548	eval IGCM_sys_Mkdir \${R_BUF_${comp}_A_H}
1549	eval IGCM_comp_modifyXmlFile nonblocker timeseries_def_${compname}.xml ${id} ts_prefix \${R_BUF_${comp}_A_H}/${config_UserChoices_JobName}
1550	;;
1551	esac
1552	done
1553	fi
1554
1555	# Read TimeSeries information from XML files, prepare CMIP6 TS directories and do modifications in dr2xml_${compname}.xml
1556	if [ -f dr2xml_${compname}.xml ]; then
1557	if ( [ X"$( echo ${config_UserChoices_ExpType} \| grep CMIP6 )" != "X" ] \|\| [ X${config_Post_dr2xmlIPSL} = XTRUE ] ) ; then
1558	eval IGCM_sys_Mkdir \${CMIP6_BUF_${comp}}
1559	eval CMIP6_DIR=\${CMIP6_BUF_${comp}}
1560	# Modify path from dr2xml_{compname}.xml
1561	if [ X${config_Post_dr2xmlIPSL} = XTRUE ]; then
1562	${libIGCM}/libIGCM_post/xios_parser.py -v modifydr2xmlIPSL --newPath ${CMIP6_DIR} --splitLastDate ${EndYear_p1} --JobName ${config_UserChoices_JobName} --ModelName ${config_UserChoices_ModelName} --ModelVersion ${config_UserChoices_LongName} --ExperimentName ${config_UserChoices_ExperimentName} --file dr2xml_${compname}.xml
1563	else
1564	${libIGCM}/libIGCM_post/xios_parser.py -v modifyPath --newPath ${CMIP6_DIR} --file dr2xml_${compname}.xml
1565	fi
1566	# Overwrite the original file
1567	IGCM_sys_Mv modified.dr2xml_${compname}.xml dr2xml_${compname}.xml
1568	fi
1569	fi
1570	done
1571
1572	IGCM_debug_PopStack "IGCM_comp_Update"
1573	}
1574
1575	#=======================================================================
1576	function IGCM_comp_Finalize
1577	{
1578	IGCM_debug_PushStack "IGCM_comp_Finalize"
1579
1580	# Debug Print :
1581	echo
1582	IGCM_debug_Print 1 "IGCM_comp_Finalize"
1583	echo
1584
1585	typeset ListTextName TextName0
1586	typeset comp compname comptagname card ListFilesName FileName0 NbFiles SaveOnArchive
1587	typeset i i_ file_in file_in_ file_out file_out_ file_outin file_outin_ generic_file_name nb_rebuild_file
1588	typeset -Z4 j4 #BASH declare j4
1589	typeset list_file nlist_file
1590	typeset compactoutputs
1591
1592	# Initialize array hosting list of rebuilded files to copy
1593	unset rebuildedActionsList
1594
1595	# Text compacting options
1596	compactoutputs=false
1597	if [ X${JobType} != XRUN ] ; then
1598	compactoutputs=true
1599	elif [ X${config_UserChoices_CompactText} != Xn ] ; then
1600	compactoutputs=true
1601	fi
1602
1603	# Prepare headers for the shell dedicated to offline rebuild
1604	if [ X${AsynchronousRebuild} = Xtrue ] ; then
1605	[ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin}
1606	if [ ${DRYRUN} -le 1 ] ; then
1607	echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1608	echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1609	echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1610	echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1611	echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1612	echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1613	echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1614	echo "export R_SAVE=${R_SAVE} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1615	echo "export R_BUFR=${R_BUFR} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1616	echo "export R_OUT_KSH=${R_OUT_KSH} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1617	echo "export R_BUF_KSH=${R_BUF_KSH} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1618	echo "export config_UserChoices_JobName=${config_UserChoices_JobName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1619	echo "export config_UserChoices_SpaceName=${config_UserChoices_SpaceName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1620	fi
1621	fi
1622
1623	for comp in ${config_ListOfComponents[*]} ; do
1624	# Define component
1625	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
1626	eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1
1627
1628	# Debug Print
1629	IGCM_debug_Print 1 "Finalize ${comp} : ${compname} component."
1630	# FINALIZE component
1631	${comp}_Finalize
1632
1633	card=${SUBMIT_DIR}/COMP/${compname}.card
1634
1635	# Save Output Text files of models
1636	#---------------------------------
1637	IGCM_debug_Print 2 "Save Output Text files for ${comp} : ${compname} component."
1638	IGCM_card_DefineArrayFromOption ${card} OutputText List
1639	ListTextName=${compname}_OutputText_List
1640
1641	eval TextName0=\${${ListTextName}[0]} > /dev/null 2>&1
1642	if [ X${TextName0} != X${NULL_STR} ] ; then
1643	eval NbFiles=\${#${ListTextName}[@]} > /dev/null 2>&1
1644
1645	(( i=0 ))
1646	until [ $i -eq $NbFiles ]; do
1647	eval file_in=\${${ListTextName}[$i]} > /dev/null 2>&1
1648	eval file_out=${PREFIX}_${file_in}
1649
1650	(( i=i+1 ))
1651
1652	unset list_file
1653	#set +A list_file -- $( ls ${file_in}* \| sort 2>/dev/null )
1654	# result for a a1 a10 a2 with file_in=a a a1 a2 a10
1655	set +A list_file -- $( [ -f ${file_in} ] && ls ${file_in} ; for i in $(ls ${file_in}* 2>/dev/null \| sed "s/${file_in}//" \| sort -n) ; do ls ${file_in}$i ; done )
1656	nlist_file=${#list_file[@]}
1657	if [ ${nlist_file} -gt 1 ] ; then
1658	if ( ${compactoutputs} ) ; then
1659	IGCM_debug_Print 2 "Parallelism of Text Output with ${nlist_file} files."
1660	IGCM_debug_Print 2 "Compact files in ${file_out} : " ${list_file[*]}
1661	echo ${list_file[*]} > ${file_out}
1662	echo "" >> ${file_out}
1663
1664	(( i_ = 0 ))
1665	for file in ${list_file[@]} ; do
1666	echo "_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ " >> ${file_out}
1667	echo "\| " ${i_} " " ${file} >> ${file_out}
1668	echo "- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - " >> ${file_out}
1669	cat ${file} \| sed "s/\(.*\)/${i_}\1/" >> ${file_out}
1670	echo "" >> ${file_out}
1671	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1
1672	(( i_ = i_ + 1 ))
1673	done
1674	if ( ${ExecutionFail} ) ; then
1675	IGCM_sys_Cp ${file_out} ${SUBMIT_DIR}/Debug
1676	fi
1677
1678	if [ X${Pack} = Xtrue ] ; then
1679	eval IGCM_sys_PutBuffer_Out ${file_out} \${R_BUF_${comp}_D}/${file_out}
1680	else
1681	eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}_D}/${file_out}
1682	fi
1683
1684	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_out}" > /dev/null 2>&1
1685	else
1686	for file in ${list_file[@]} ; do
1687	if ( ${ExecutionFail} ) ; then
1688	IGCM_sys_Cp ${file} ${SUBMIT_DIR}/Debug/${PREFIX}_${file}
1689	fi
1690
1691	if [ X${Pack} = Xtrue ] ; then
1692	eval IGCM_sys_PutBuffer_Out ${file} \${R_BUF_${comp}_D}/${PREFIX}_${file}
1693	else
1694	eval IGCM_sys_Put_Out ${file} \${R_OUT_${comp}_D}/${PREFIX}_${file}
1695	fi
1696
1697	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1
1698	done
1699	fi
1700	else
1701	if ( [ -f ${file_in}_0000 ] \|\| [ -f ${file_in}0 ] ) ; then
1702	eval IGCM_sys_Mv ${file_in}* ${file_in}
1703	fi
1704
1705	if ( ${ExecutionFail} ) ; then
1706	IGCM_sys_Cp ${file_in} ${SUBMIT_DIR}/Debug/${file_out}
1707	fi
1708
1709	if [ X${Pack} = Xtrue ] ; then
1710	eval IGCM_sys_PutBuffer_Out ${file_in} \${R_BUF_${comp}_D}/${file_out}
1711	else
1712	eval IGCM_sys_Put_Out ${file_in} \${R_OUT_${comp}_D}/${file_out}
1713	fi
1714	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1
1715	fi
1716	done
1717	fi
1718
1719	# Save Restarts files
1720	#--------------------
1721	IGCM_debug_Print 2 "Save Restart files for ${comp} : ${compname} component."
1722	IGCM_card_DefineArrayFromOption ${card} RestartFiles List
1723	ListFilesName=${compname}_RestartFiles_List
1724	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
1725
1726	if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then
1727	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
1728
1729	(( i=0 ))
1730	until [ $i -ge $NbFiles ]; do
1731	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
1732	eval file_in=${file_in_}
1733
1734	(( i_ = i+1 ))
1735	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
1736	eval file_out=${file_out_}
1737
1738	(( i_ = i+2 ))
1739	eval file_outin_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
1740	eval file_outin=${file_outin_}
1741
1742	generic_restart_file_name_in=$( basename ${file_in} .nc )
1743	generic_restart_file_name_out=$( basename ${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} .nc )
1744	generic_restart_file_name_outin=$( basename ${file_outin} .nc )
1745
1746	nb_restart_file=$( ls ${generic_restart_file_name_in}_????.nc 2>/dev/null \| wc -l )
1747	if [ ${nb_restart_file} -gt 1 ] ; then
1748	j=0 # BASH LINE NOT NEEDED
1749	# BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do
1750	until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED
1751	j4=${j} # BASH LINE NOT NEEDED
1752	if [ X${Pack} = Xtrue ] ; then
1753	eval IGCM_sys_PutBuffer_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_BUF_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc
1754	else
1755	eval IGCM_sys_Put_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_OUT_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc
1756	fi
1757	if [ ! ${file_in} = ${file_outin} ] ; then
1758	if ( ${ExitFlag} ) ; then
1759	echo "IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc not executed."
1760	else
1761	IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc
1762	fi
1763	fi
1764	(( j=j+1 )) # BASH LINE NOT NEEDED
1765	done
1766	else
1767	if [ X${Pack} = Xtrue ] ; then
1768	eval IGCM_sys_PutBuffer_Rest ${file_in} \${R_BUF_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out}
1769	else
1770	eval IGCM_sys_Put_Rest ${file_in} \${R_OUT_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out}
1771	fi
1772	if [ ! ${file_in} = ${file_outin} ] ; then
1773	if ( ${ExitFlag} ) ; then
1774	echo "IGCM_sys_Mv ${file_in} ${file_outin} not executed."
1775	else
1776	IGCM_sys_Mv ${file_in} ${file_outin}
1777	fi
1778	fi
1779	fi
1780
1781	(( i=i+3 ))
1782	done
1783	else
1784	if [ X${FileName0} != XNONE ] ; then
1785	IGCM_debug_Exit "IGCM_comp_Finalize : No file in restart list for ${compname}."
1786	else
1787	IGCM_debug_Print 1 "IGCM_comp_Finalize : NONE specified in Restart List ${compname}."
1788	fi
1789	fi
1790
1791	# Save Output files
1792	#------------------
1793	IGCM_debug_Print 2 "Save Output files for ${comp} : ${compname} component."
1794	IGCM_card_DefineArrayFromOption ${card} OutputFiles List
1795	ListFilesName=${compname}_OutputFiles_List
1796	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
1797
1798	if [ X${FileName0} != X${NULL_STR} ] ; then
1799	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
1800
1801	(( i=0 ))
1802	until [ $i -ge $NbFiles ]; do
1803	SaveOnArchive=true
1804	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
1805	eval file_in=${file_in_}
1806	(( i_ = i+1 ))
1807	eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
1808	eval file_out=${file_out_}
1809	#
1810	# Override file_out path remplacing R_SAVE by R_BUFR
1811	#
1812	if [ X${Pack} = Xtrue ] ; then
1813	file_out=$( echo $file_out \| sed "s:^$R_SAVE:$R_BUFR:" )
1814	fi
1815	#
1816	# Not necessarily the best option. /!\ Potential side effects /!\
1817	#
1818	(( i_ = i+2 ))
1819	eval flag_post=\${${ListFilesName}[$i_]} > /dev/null 2>&1
1820	#
1821	generic_file_name=$( basename ${file_in} .nc )
1822	nb_rebuild_file=$( ls \| grep "^${generic_file_name}_[0-9]*.nc" \| wc -l )
1823	#
1824	if ( [ ${nb_rebuild_file} -eq 1 ] && [ -f ${generic_file_name}_0000.nc ] ) ; then
1825	IGCM_debug_Print 2 "Parallelism with 1 file. Rebuilding ${file_in} not needed"
1826	IGCM_sys_Mv ${generic_file_name}_0000.nc ${file_in}
1827	elif [ ${nb_rebuild_file} -gt 1 ] ; then
1828	IGCM_debug_Print 2 "Parallelism detected and rebuilding ${file_in} is needed"
1829	if [ X${AsynchronousRebuild} = Xfalse ] ; then
1830	IGCM_debug_Print 2 "Rebuilding ${file_in} online"
1831	#
1832	# for output.abort file, let use rebuild_NEMO : 13s instead of 20 mn.
1833	if [ ${file_in} = output.abort.nc ] ; then
1834	IGCM_sys_rebuild_nemo ${generic_file_name} ${nb_rebuild_file} "nc" ${generic_file_name}_[0-9]*.nc
1835	else
1836	IGCM_sys_rebuild ${file_in} ${generic_file_name}_????.nc
1837	fi
1838	else
1839	IGCM_debug_Print 2 "Preparing offline rebuild for ${file_in}"
1840	IGCM_sys_Mv ${generic_file_name}_????.nc ${RUN_DIR}/REBUILD_${PeriodDateBegin}
1841
1842	# Prepare the shell dedicated to offline rebuild
1843	if [ $DRYRUN -le 1 ]; then
1844	if [ ${file_in} = histstn.nc ] ; then
1845	echo "IGCM_sys_rebuild_station ${file_in} ${generic_file_name}_*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1846	else
1847	echo "IGCM_sys_rebuild ${file_in} ${generic_file_name}_[0-9]*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1848	fi
1849	echo "IGCM_debug_Verif_Exit" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1850	fi
1851	#
1852	# Load Patch we need to apply and apply
1853	if [ $DRYRUN -le 1 ]; then
1854	if [ X$( eval echo \${${compname}_${flag_post}_Patches[0]} ) != X${NULL_STR} ]; then
1855	for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ) ; do
1856	echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1857	echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1858	echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1859	done
1860	fi
1861	fi
1862	#
1863	if [ $DRYRUN -le 1 ]; then
1864	if [ X${Pack} = Xtrue ] ; then
1865	rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_sys_PutBuffer_Out ${file_in} ${file_out}"
1866	else
1867	rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_sys_Put_Out ${file_in} ${file_out}"
1868	fi
1869	rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_debug_Verif_Exit"
1870	rebuildedActionsList[${#rebuildedActionsList[]}]="IGCM_sys_Rm ${generic_file_name}_[0-9].nc"
1871	fi
1872	SaveOnArchive=false
1873	fi
1874	fi
1875	#
1876	if [ ${SaveOnArchive} = true ] ; then
1877	#
1878	# Rebuild has been done online or it was not needed
1879	#
1880	# If we need to apply a patch we use TMP DIRECTORY before ARCHIVING if asynchronous rebuild is on
1881	#
1882	thereisapatch=$( eval echo \${${compname}_${flag_post}_Patches[0]} )
1883	if ( [ ! X${thereisapatch} = X${NULL_STR} ] && [ ! X${thereisapatch} = X ] && [ X${AsynchronousRebuild} = Xtrue ] && [ -f ${file_in} ] ) ; then
1884	IGCM_sys_Mv ${file_in} ${RUN_DIR}/REBUILD_${PeriodDateBegin}
1885	eval FileToBeDeleted[${#FileToBeDeleted[@]}]=REBUILD_${PeriodDateBegin}/${file_in} > /dev/null 2>&1
1886	#
1887	if [ $DRYRUN -le 1 ]; then
1888	for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ) ; do
1889	echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1890	echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1891	echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1892	done
1893	#
1894	if [ X${Pack} = Xtrue ] ; then
1895	echo "IGCM_sys_PutBuffer_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1896	else
1897	echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1898	fi
1899	echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1900	#
1901	fi
1902	else
1903	#
1904	# No Patch, No Asynchronous rebuild, online rebuild has been done or was not needed
1905	#
1906	if [ X${Pack} = Xtrue ] ; then
1907	IGCM_sys_PutBuffer_Out ${file_in} ${file_out}
1908	else
1909	IGCM_sys_Put_Out ${file_in} ${file_out}
1910	fi
1911	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1
1912	if [ ${nb_rebuild_file} -gt 1 ] ; then
1913	for DelFile in $( ls \| grep "${generic_file_name}[_0-9]*.nc" ) ; do
1914	eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${DelFile} > /dev/null 2>&1
1915	done
1916	fi
1917	fi
1918	fi
1919	(( i=i+3 ))
1920	done
1921	fi
1922	echo
1923	done
1924	# Append the sync call and the copy sequence to the IGCM_FlushRebuild function if needed
1925	if [ ${#rebuildedActionsList[*]} -ne 0 ] ; then
1926	echo "IGCM_sys_sync " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1927	i=0
1928	until [ ${i} -ge ${#rebuildedActionsList[*]} ]; do
1929	echo ${rebuildedActionsList[$i]} >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh
1930	(( i=i+1 ))
1931	done
1932	fi
1933	IGCM_debug_PopStack "IGCM_comp_Finalize"
1934	}

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