[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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| 5 | # Contact: Sebastien.Denvil@ipsl.jussieu.fr Martial.Mancip@ipsl.jussieu.fr |
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[4] | 6 | # $Date$ |
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[5] | 7 | # $Author$ |
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| 8 | # $Revision$ |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # History: |
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| 12 | # Modification: |
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| 13 | # |
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| 14 | #************************************************************** |
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| 15 | |
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| 16 | #======================================================================== |
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| 17 | function IGCM_comp_Initialize |
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| 18 | { |
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| 19 | IGCM_debug_PushStack "IGCM_comp_Initialize" |
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| 20 | |
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| 21 | # Debug Print : |
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| 22 | echo |
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| 23 | IGCM_debug_Print 1 "IGCM_comp_Initialize :" |
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| 24 | echo |
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| 25 | |
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| 26 | typeset comp compname comptagname CompatibilityTag auxprint card_UserChoices first_option |
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| 27 | for comp in ${config_ListOfComponents[*]} ; do |
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| 28 | # Debug Print |
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| 29 | IGCM_debug_Print 1 ${comp} |
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| 30 | # Define component |
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| 31 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp} |
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| 32 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 33 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 34 | |
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| 35 | # Read libIGCM compatibility version in ${compname}.card |
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| 36 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 37 | IGCM_card_DefineVariableFromOption ${card} Compatibility libIGCM |
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| 38 | eval CompatibilityTag=\${${compname}_Compatibility_libIGCM} > /dev/null 2>&1 |
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| 39 | |
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| 40 | if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then |
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| 41 | IGCM_debug_Exit "${compname}.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ." |
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| 42 | fi |
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| 43 | |
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| 44 | # Manage component executable |
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| 45 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card Executable ${comp} |
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| 46 | |
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| 47 | # Read component Write Frequency in config.card |
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| 48 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} WriteFrequency |
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| 49 | # Debug Print : |
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| 50 | eval auxprint=\${config_${comp}_WriteFrequency} |
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| 51 | IGCM_debug_Print 1 "Write frequency for ${compname} : ${auxprint} " |
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| 52 | #2> /dev/null |
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| 53 | |
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| 54 | # Debug Print : |
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| 55 | IGCM_debug_Print 1 "Initialize following component library :" |
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| 56 | IGCM_debug_Print 1 ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 57 | IGCM_debug_Print 3 "With tag : ${comptagname}" |
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| 58 | # Source component library |
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| 59 | . ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 60 | |
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| 61 | # Debug Print |
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| 62 | IGCM_debug_Print 3 "Initialize ${comp} output directory." |
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| 63 | # Define Dirs |
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| 64 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 65 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}} |
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| 66 | |
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| 67 | eval R_OUT_${comp}_O=\${R_OUT_${comp}}/Output |
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| 68 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_O} |
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| 69 | |
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| 70 | eval R_OUT_${comp}_R=\${R_OUT_${comp}}/Restart |
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| 71 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_R} |
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| 72 | |
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| 73 | eval R_OUT_${comp}_D=\${R_OUT_${comp}}/Debug |
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| 74 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_D} |
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| 75 | |
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| 76 | eval R_OUT_${comp}_O_I=\${R_OUT_${comp}_O}/INS |
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| 77 | eval R_OUT_${comp}_O_H=\${R_OUT_${comp}_O}/HF |
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| 78 | eval R_OUT_${comp}_O_D=\${R_OUT_${comp}_O}/DA |
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| 79 | eval R_OUT_${comp}_O_M=\${R_OUT_${comp}_O}/MO |
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| 80 | eval R_OUT_${comp}_O_Y=\${R_OUT_${comp}_O}/YE |
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| 81 | |
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| 82 | |
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| 83 | # Read UserChoices section of component card |
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| 84 | IGCM_debug_Print 1 "DefineArrayFromOption : ${compname}_UserChoices ${card}" |
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| 85 | IGCM_card_DefineArrayFromSection ${card} UserChoices |
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| 86 | eval first_option=\${${compname}_UserChoices[0]} > /dev/null 2>&1 |
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| 87 | if [ X${first_option} != X"Error:" ] ; then |
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| 88 | eval IGCM_debug_Print 2 "${compname}_UserChoices_Options:" \${${compname}_UserChoices[*]} |
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| 89 | if [ X${card_UserChoices[0]} != X ] ; then |
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| 90 | unset card_UserChoices |
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| 91 | fi |
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| 92 | eval set +A card_UserChoices -- \${${compname}_UserChoices[*]} > /dev/null 2>&1 |
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| 93 | typeset option |
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| 94 | for option in ${card_UserChoices[*]} ; do |
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| 95 | IGCM_card_DefineVariableFromOption ${card} UserChoices ${option} |
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| 96 | eval IGCM_debug_Print 3 "${compname}_UserChoices_values: ${card_UserChoices[*]}" |
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| 97 | done |
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| 98 | fi |
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| 99 | |
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| 100 | # Debug Print |
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| 101 | IGCM_debug_Print 3 "Initialize ${compname} with driver." |
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| 102 | # INIT component |
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| 103 | ${comp}_Initialize |
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| 104 | echo |
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| 105 | done |
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| 106 | echo "-----" |
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| 107 | |
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| 108 | echo |
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| 109 | IGCM_debug_Print 1 "DefineArrayFromOption : ListOfComponents" |
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| 110 | IGCM_debug_PrintVariables 3 config_ListOfComponents |
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| 111 | |
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| 112 | IGCM_debug_PopStack "IGCM_comp_Initialize" |
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| 113 | } |
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| 114 | |
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| 115 | #======================================================================= |
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| 116 | function IGCM_comp_PrepareDeletedFiles |
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| 117 | { |
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| 118 | IGCM_debug_PushStack "IGCM_comp_PrepareDeletedFiles" $@ |
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| 119 | |
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| 120 | if [ X${2} != X. ] ; then |
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| 121 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${2} ) > /dev/null 2>&1 |
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| 122 | else |
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| 123 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${1} ) > /dev/null 2>&1 |
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| 124 | fi |
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| 125 | |
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| 126 | IGCM_debug_PopStack "IGCM_comp_PrepareDeletedFiles" |
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| 127 | } |
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| 128 | |
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| 129 | #======================================================================= |
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| 130 | function IGCM_comp_GetInputInitialStateFiles |
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| 131 | { |
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| 132 | IGCM_debug_PushStack "IGCM_comp_GetInputInitialStateFiles" |
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| 133 | |
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| 134 | # Debug Print : |
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| 135 | echo |
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| 136 | IGCM_debug_Print 1 "IGCM_comp_GetInputInitialStateFiles :" |
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| 137 | echo |
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| 138 | |
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| 139 | # Only the first time step need InitialStateFiles |
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| 140 | # otherwise it's BoundaryConditions |
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| 141 | if ( ${FirstInitialize} ) ; then |
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| 142 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 143 | typeset file_in_ file_in file_out_ file_out do_init |
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| 144 | for comp in ${config_ListOfComponents[*]} ; do |
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| 145 | # Initialize |
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| 146 | do_init="y" |
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| 147 | # Do we need to bring initial state file for this component |
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| 148 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
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| 149 | eval do_init="n" |
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| 150 | else |
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| 151 | # Read component Restarts parameters |
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| 152 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
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| 153 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 154 | if [ "${do_start}" = "y" ] ; then |
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| 155 | do_init="n" |
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| 156 | else |
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| 157 | do_init="y" |
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| 158 | fi |
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| 159 | fi |
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| 160 | |
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| 161 | if [ "${do_init}" = "y" ] ; then |
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| 162 | # Define component |
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| 163 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 164 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 165 | |
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| 166 | # Debug Print : |
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| 167 | IGCM_debug_Print 3 "Initialisation files ${compname}" |
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| 168 | |
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| 169 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 170 | |
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| 171 | IGCM_card_DefineArrayFromOption ${card} InitialStateFiles List |
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| 172 | ListFilesName=${compname}_InitialStateFiles_List |
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| 173 | |
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| 174 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 175 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 176 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 177 | |
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| 178 | (( i=0 )) |
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| 179 | until [ $i -ge $NbFiles ]; do |
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| 180 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 181 | eval file_in=${file_in_} |
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| 182 | (( i_ = i+1 )) |
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| 183 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 184 | eval file_out=${file_out_} |
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| 185 | |
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| 186 | IGCM_sys_Get ${file_in} ${file_out} |
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| 187 | |
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| 188 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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| 189 | |
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| 190 | (( i=i+2 )) |
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| 191 | done |
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| 192 | fi |
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| 193 | fi |
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| 194 | done |
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| 195 | fi |
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| 196 | IGCM_debug_PopStack "IGCM_comp_GetInputInitialStateFiles" |
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| 197 | } |
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| 198 | |
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| 199 | #======================================================================= |
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| 200 | function IGCM_comp_GetInputBoundaryFiles |
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| 201 | { |
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| 202 | IGCM_debug_PushStack "IGCM_comp_GetInputBoundaryFiles" |
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| 203 | |
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| 204 | # Debug Print : |
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| 205 | echo |
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| 206 | IGCM_debug_Print 1 "IGCM_comp_GetInputBoundaryFiles :" |
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| 207 | echo |
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| 208 | |
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| 209 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 210 | typeset file_in_ file_in file_out_ file_out |
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| 211 | |
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| 212 | if [ ${Period} = 1 ]; then |
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| 213 | ListFixBoundary=" " |
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| 214 | fi |
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| 215 | |
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| 216 | for comp in ${config_ListOfComponents[*]} ; do |
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| 217 | |
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| 218 | echo "-----" |
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| 219 | # Define component |
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| 220 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 221 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 222 | |
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| 223 | # Debug Print : |
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| 224 | IGCM_debug_Print 3 "Boundary files ${compname}" |
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| 225 | |
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| 226 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 227 | |
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| 228 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles List |
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| 229 | ListFilesName=${compname}_BoundaryFiles_List |
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| 230 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 231 | |
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| 232 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 233 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 234 | |
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| 235 | (( i=0 )) |
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| 236 | until [ $i -ge $NbFiles ]; do |
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| 237 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 238 | eval file_in=${file_in_} |
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| 239 | (( i_ = i+1 )) |
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| 240 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 241 | eval file_out=${file_out_} |
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| 242 | |
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| 243 | IGCM_sys_Get ${file_in} ${file_out} |
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| 244 | |
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| 245 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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| 246 | |
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| 247 | (( i=i+2 )) |
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| 248 | done |
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| 249 | fi |
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| 250 | |
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| 251 | # Get non deleted files |
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| 252 | if [ ${Period} = 1 ]; then |
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| 253 | |
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| 254 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles ListNonDel |
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| 255 | ListFilesName=${compname}_BoundaryFiles_ListNonDel |
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| 256 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 257 | |
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| 258 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 259 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 260 | |
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| 261 | (( i=0 )) |
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| 262 | until [ $i -ge $NbFiles ]; do |
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| 263 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 264 | eval file_in=${file_in_} |
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| 265 | (( i_ = i+1 )) |
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| 266 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 267 | eval file_out=${file_out_} |
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| 268 | |
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| 269 | IGCM_sys_Get ${file_in} ${file_out} |
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| 270 | |
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| 271 | if [ X${file_out} != X. ] ; then |
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| 272 | ListFixBoundary=${ListFixBoundary}" "${file_out} |
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| 273 | else |
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| 274 | ListFixBoundary=${ListFixBoundary}" "$( basename ${file_in} ) |
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| 275 | fi |
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| 276 | |
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| 277 | (( i=i+2 )) |
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| 278 | done |
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| 279 | fi |
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| 280 | fi |
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| 281 | done |
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| 282 | |
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| 283 | IGCM_debug_PopStack "IGCM_comp_GetInputBoundaryFiles" |
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| 284 | } |
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| 285 | |
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| 286 | #======================================================================= |
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| 287 | function IGCM_comp_DelFixeBoundaryFiles |
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| 288 | { |
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| 289 | IGCM_debug_PushStack "IGCM_comp_DelFixeBoundaryFiles" |
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| 290 | |
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| 291 | # Debug Print : |
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| 292 | echo |
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| 293 | IGCM_debug_Print 1 "IGCM_comp_DelFixeBoundaryFiles :" |
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| 294 | echo |
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| 295 | |
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| 296 | ls -l ${ListFixBoundary} |
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| 297 | rm -f ${ListFixBoundary} |
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| 298 | |
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| 299 | IGCM_debug_PopStack "IGCM_comp_DelFixeBoundaryFiles" |
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| 300 | } |
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| 301 | |
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| 302 | #======================================================================= |
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| 303 | function IGCM_comp_GetInputParametersFiles |
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| 304 | { |
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| 305 | IGCM_debug_PushStack "IGCM_comp_GetInputParametersFiles" |
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| 306 | |
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| 307 | # Debug Print : |
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| 308 | echo |
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| 309 | IGCM_debug_Print 1 "IGCM_comp_GetInputParametersFiles :" |
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| 310 | echo |
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| 311 | |
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| 312 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ file_in file_out |
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| 313 | for comp in ${config_ListOfComponents[*]} ; do |
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| 314 | # Define component |
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| 315 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 316 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 317 | |
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| 318 | # Debug Print : |
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| 319 | IGCM_debug_Print 3 "Parameters ${compname}" |
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| 320 | |
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| 321 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 322 | |
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| 323 | IGCM_card_DefineArrayFromOption ${card} ParametersFiles List |
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| 324 | ListFilesName=${compname}_ParametersFiles_List |
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| 325 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 326 | |
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| 327 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 328 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 329 | |
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| 330 | (( i=0 )) |
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| 331 | until [ $i -ge $NbFiles ]; do |
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| 332 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 333 | eval file_in=${file_in_} |
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| 334 | (( i_ = i+1 )) |
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| 335 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 336 | eval file_out=${file_out_} |
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| 337 | |
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| 338 | IGCM_sys_Cp ${file_in} ${file_out} |
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| 339 | |
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| 340 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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| 341 | |
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| 342 | (( i=i+2 )) |
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| 343 | done |
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| 344 | fi |
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| 345 | done |
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| 346 | |
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| 347 | IGCM_debug_PopStack "IGCM_comp_GetInputParametersFiles" |
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| 348 | } |
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| 349 | |
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| 350 | #======================================================================= |
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| 351 | function IGCM_comp_GetInputRestartFiles |
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| 352 | { |
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| 353 | IGCM_debug_PushStack "IGCM_comp_GetInputRestartFiles" |
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| 354 | |
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| 355 | # Debug Print : |
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| 356 | echo |
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| 357 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles :" |
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| 358 | echo |
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| 359 | |
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[38] | 360 | typeset Date_tmp Date_r Path_r do_start CompOldName Path_temp |
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[2] | 361 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 362 | typeset file_in file_out file_in_ file_out_ file_in_Name |
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[38] | 363 | typeset -Z4 j4 |
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[2] | 364 | |
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| 365 | for comp in ${config_ListOfComponents[*]} ; do |
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| 366 | # Define component |
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| 367 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 368 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 369 | |
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| 370 | # Debug Print : |
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| 371 | IGCM_debug_Print 3 "restart ${compname}" |
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| 372 | |
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| 373 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 374 | |
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| 375 | if ( ${FirstInitialize} ) ; then |
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| 376 | |
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| 377 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
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| 378 | eval config_${comp}_Restart="y" |
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| 379 | eval config_${comp}_RestartDate=${config_Restarts_RestartDate} |
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| 380 | eval config_${comp}_RestartJobName=${config_Restarts_RestartJobName} |
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| 381 | eval config_${comp}_RestartPath=${config_Restarts_RestartPath} |
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| 382 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 383 | eval CompOldName=${comp} |
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| 384 | else |
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| 385 | # Read component Restarts parameters |
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| 386 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
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| 387 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 388 | |
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| 389 | if [ "${do_start}" = "y" ] ; then |
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| 390 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartDate |
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| 391 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartJobName |
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| 392 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartPath |
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| 393 | else |
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| 394 | eval config_${comp}_RestartDate=-1 |
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| 395 | eval config_${comp}_RestartJobName=${NULL_STR} |
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| 396 | eval config_${comp}_RestartPath=${NULL_STR} |
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| 397 | fi |
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| 398 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} OldName |
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| 399 | eval CompOldName=\${config_${comp}_OldName} |
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| 400 | if [ X${CompOldName} = X ] ; then |
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| 401 | eval CompOldName=${comp} |
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| 402 | fi |
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| 403 | fi |
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| 404 | |
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| 405 | if [ "${do_start}" = "y" ] ; then |
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| 406 | |
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| 407 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
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| 408 | ListFilesName=${compname}_RestartFiles_List |
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| 409 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 410 | |
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| 411 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
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| 412 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 413 | |
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| 414 | (( i=1 )) |
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| 415 | until [ $i -gt $NbFiles ]; do |
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| 416 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 417 | eval file_in=${file_in_} |
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| 418 | |
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| 419 | (( i_ = i+1 )) |
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| 420 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 421 | eval file_out=${file_out_} |
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| 422 | |
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| 423 | eval Date_tmp=\${config_${comp}_RestartDate} |
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| 424 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${Date_tmp} ) |
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| 425 | eval Path_r=\${config_${comp}_RestartPath}/\${config_${comp}_RestartJobName}/${CompOldName}/Restart |
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| 426 | eval file_in_Name=\${config_${comp}_RestartJobName}_${Date_r}_${file_in} |
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| 427 | |
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[38] | 428 | generic_restart_file_name_in=$( basename ${file_in_Name} .nc ) |
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| 429 | generic_restart_file_name_out=$( basename ${file_out} .nc ) |
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| 430 | |
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| 431 | eval Path_temp=\${Path_r}/${generic_restart_file_name_in} |
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[41] | 432 | nb_restart_file=$(IGCM_sys_Nb_files_archive ${Path_temp}_????.nc) |
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[2] | 433 | |
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[41] | 434 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 435 | j=0 |
---|
| 436 | until [ $j -ge $nb_restart_file ]; do |
---|
| 437 | j4=${j} |
---|
| 438 | eval IGCM_sys_Get ${Path_r}/${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 439 | IGCM_comp_PrepareDeletedFiles ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 440 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_out}_${j4}.nc" > /dev/null 2>&1 |
---|
| 441 | (( j=j+1 )) |
---|
| 442 | done |
---|
| 443 | else |
---|
[38] | 444 | eval IGCM_sys_Get ${Path_r}/${file_in_Name} ${file_out} |
---|
| 445 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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[41] | 446 | fi |
---|
[2] | 447 | |
---|
| 448 | (( i=i+3 )) |
---|
| 449 | done |
---|
| 450 | else |
---|
| 451 | if [ X${FileName0} != XNONE ] ; then |
---|
| 452 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 453 | else |
---|
| 454 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 455 | fi |
---|
| 456 | fi |
---|
| 457 | fi |
---|
| 458 | else |
---|
| 459 | # if not FirstInitialize |
---|
| 460 | |
---|
| 461 | # Restore Restarts files |
---|
| 462 | #----------------------- |
---|
| 463 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
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| 464 | ListFilesName=${compname}_RestartFiles_List |
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| 465 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 466 | |
---|
| 467 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 468 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 469 | |
---|
| 470 | (( i=1 )) |
---|
| 471 | until [ $i -gt $NbFiles ]; do |
---|
| 472 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 473 | eval file_in=${file_in_} |
---|
| 474 | (( i_ = i+1 )) |
---|
| 475 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 476 | eval file_out=${file_out_} |
---|
| 477 | |
---|
| 478 | file_in_Name=${run_Configuration_OldPrefix}_${file_in} |
---|
| 479 | |
---|
[38] | 480 | generic_restart_file_name_in=$( basename ${file_in_Name} .nc ) |
---|
| 481 | generic_restart_file_name_out=$( basename ${file_out} .nc ) |
---|
[2] | 482 | |
---|
[38] | 483 | eval Path_temp=\${R_OUT_${comp}_R}/${generic_restart_file_name_in} |
---|
[41] | 484 | IGCM_sys_Nb_files_archive ${Path_temp}_????.nc |
---|
| 485 | nb_restart_file=$(IGCM_sys_Nb_files_archive ${Path_temp}_????.nc) |
---|
| 486 | IGCM_debug_Print 1 "nb_restart_file=${nb_restart_file}" |
---|
| 487 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 488 | j=0 |
---|
| 489 | until [ $j -ge $nb_restart_file ]; do |
---|
| 490 | j4=${j} |
---|
| 491 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 492 | IGCM_comp_PrepareDeletedFiles ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 493 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_out}_${j4}.nc" > /dev/null 2>&1 |
---|
| 494 | |
---|
| 495 | (( j=j+1 )) |
---|
| 496 | done |
---|
| 497 | else |
---|
[38] | 498 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${file_in_Name} ${file_out} |
---|
| 499 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[41] | 500 | fi |
---|
[38] | 501 | |
---|
[2] | 502 | (( i=i+3 )) |
---|
| 503 | done |
---|
| 504 | else |
---|
| 505 | if [ X${FileName0} != XNONE ] ; then |
---|
| 506 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 507 | else |
---|
| 508 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 509 | fi |
---|
| 510 | fi |
---|
| 511 | fi |
---|
| 512 | done |
---|
| 513 | IGCM_sys_Chmod -R u+rw . |
---|
| 514 | |
---|
| 515 | IGCM_debug_PopStack "IGCM_comp_GetInputRestartFiles" |
---|
| 516 | } |
---|
| 517 | |
---|
| 518 | #======================================================================= |
---|
| 519 | function IGCM_comp_Update |
---|
| 520 | { |
---|
| 521 | IGCM_debug_PushStack "IGCM_comp_Update" |
---|
| 522 | |
---|
| 523 | # Debug Print : |
---|
| 524 | echo |
---|
| 525 | IGCM_debug_Print 1 "IGCM_comp_Update :" |
---|
| 526 | echo |
---|
| 527 | |
---|
| 528 | typeset ExeNameIn ExeNameOut |
---|
| 529 | typeset comp compname comptagname |
---|
| 530 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 531 | # Define component |
---|
| 532 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 533 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 534 | |
---|
| 535 | # Copy executable for this component |
---|
| 536 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 537 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 538 | if [ -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 539 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 540 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 541 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 542 | fi |
---|
| 543 | fi |
---|
| 544 | |
---|
| 545 | # Debug Print |
---|
| 546 | IGCM_debug_Print 3 "Update ${compname} Parameter Files." |
---|
| 547 | # UPDATE component |
---|
| 548 | ${comp}_Update |
---|
| 549 | |
---|
| 550 | done |
---|
| 551 | |
---|
| 552 | IGCM_debug_PopStack "IGCM_comp_Update" |
---|
| 553 | } |
---|
| 554 | |
---|
| 555 | #======================================================================= |
---|
| 556 | function IGCM_comp_Finalize |
---|
| 557 | { |
---|
| 558 | IGCM_debug_PushStack "IGCM_comp_Finalize" |
---|
| 559 | |
---|
| 560 | # Debug Print : |
---|
| 561 | echo |
---|
| 562 | IGCM_debug_Print 1 "IGCM_comp_Finalize :" |
---|
| 563 | echo |
---|
| 564 | |
---|
| 565 | typeset ListTextName TextName0 |
---|
[22] | 566 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles SaveOnArchive |
---|
[2] | 567 | typeset i i_ file_in file_in_ file_out file_out_ generic_file_name nb_rebuild_file |
---|
[38] | 568 | typeset -Z4 j4 |
---|
[2] | 569 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 570 | # Define component |
---|
| 571 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 572 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 573 | |
---|
| 574 | # Debug Print |
---|
| 575 | IGCM_debug_Print 1 "Finalize ${compname} component." |
---|
| 576 | # FINALIZE component |
---|
| 577 | ${comp}_Finalize |
---|
| 578 | |
---|
| 579 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 580 | |
---|
| 581 | # Save Restarts files |
---|
| 582 | #-------------------- |
---|
| 583 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 584 | ListFilesName=${compname}_RestartFiles_List |
---|
| 585 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 586 | |
---|
| 587 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 588 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 589 | |
---|
| 590 | (( i=0 )) |
---|
| 591 | until [ $i -ge $NbFiles ]; do |
---|
| 592 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 593 | eval file_in=${file_in_} |
---|
| 594 | |
---|
| 595 | (( i_ = i+1 )) |
---|
| 596 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 597 | eval file_out=${file_out_} |
---|
| 598 | |
---|
[38] | 599 | generic_restart_file_name_in=$( basename ${file_in} .nc ) |
---|
| 600 | generic_restart_file_name_out=$( basename ${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} .nc ) |
---|
| 601 | |
---|
[41] | 602 | nb_restart_file=$(IGCM_sys_Nb_files_archive ${Path_temp}_????.nc) |
---|
| 603 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 604 | j=0 |
---|
| 605 | until [ $j -ge $nb_restart_file ]; do |
---|
| 606 | j4=${j} |
---|
| 607 | eval IGCM_sys_Put_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_OUT_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
| 608 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_in}_${j4}.nc" > /dev/null 2>&1 |
---|
| 609 | (( j=j+1 )) |
---|
| 610 | done |
---|
| 611 | else |
---|
[38] | 612 | eval IGCM_sys_Put_Rest ${file_in} \${R_OUT_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
| 613 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
[41] | 614 | fi |
---|
[2] | 615 | |
---|
| 616 | (( i=i+3 )) |
---|
| 617 | done |
---|
| 618 | else |
---|
| 619 | if [ X${FileName0} != XNONE ] ; then |
---|
| 620 | IGCM_debug_Exit "IGCM_comp_Finalize : No file in restart list for ${compname}." |
---|
| 621 | else |
---|
| 622 | IGCM_debug_Print 1 "IGCM_comp_Finalize : NONE specified in Restart List ${compname}." |
---|
| 623 | fi |
---|
| 624 | fi |
---|
| 625 | |
---|
| 626 | # Save Output files |
---|
| 627 | #------------------ |
---|
| 628 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 629 | ListFilesName=${compname}_OutputFiles_List |
---|
| 630 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 631 | |
---|
| 632 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 633 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 634 | |
---|
| 635 | (( i=0 )) |
---|
| 636 | until [ $i -ge $NbFiles ]; do |
---|
[22] | 637 | SaveOnArchive=true |
---|
[2] | 638 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 639 | eval file_in=${file_in_} |
---|
| 640 | (( i_ = i+1 )) |
---|
| 641 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 642 | eval file_out=${file_out_} |
---|
[22] | 643 | # |
---|
[2] | 644 | generic_file_name=$( basename ${file_in} .nc ) |
---|
| 645 | nb_rebuild_file=$( ls | grep "${generic_file_name}[_0-9]*.nc" | wc -l ) |
---|
[22] | 646 | # |
---|
| 647 | if ( [ ${nb_rebuild_file} -eq 1 ] && [ -f ${generic_file_name}_0000.nc ] ) ; then |
---|
| 648 | IGCM_debug_Print 2 "Parallelism with 1 process. Rebuilding ${file_in} not needed" |
---|
[2] | 649 | IGCM_sys_Mv ${generic_file_name}_0000.nc ${file_in} |
---|
[22] | 650 | elif [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 651 | IGCM_debug_Print 2 "Parallelism detected rebuilding ${file_in} is needed" |
---|
| 652 | if ( [ X${config_Post_RebuildFrequency} = X${NULL_STR} ] || [ X${config_Post_RebuildFrequency} = XNONE ] ) ; then |
---|
| 653 | IGCM_debug_Print 2 "Rebuilding ${file_in} online" |
---|
| 654 | IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc |
---|
| 655 | else |
---|
| 656 | IGCM_debug_Print 2 "Preparing offline rebuild for ${file_in}" |
---|
[34] | 657 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
[22] | 658 | IGCM_sys_Mv ${generic_file_name}_????.nc ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 659 | # Prepare headers for the shell dedicated to offline rebuild |
---|
| 660 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
| 661 | echo \#!/bin/ksh > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 662 | echo function IGCM_FlushRebuild >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 663 | echo { >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 664 | echo IGCM_debug_PushStack "IGCM_FlushRebuild" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 665 | echo echo >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 666 | echo IGCM_debug_Print 1 "IGCM_FlushRebuild :" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 667 | echo echo >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 668 | fi |
---|
| 669 | # Prepare the shell dedicated to offline rebuild |
---|
| 670 | echo IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 671 | echo IGCM_sys_Put_Out ${file_in} ${file_out} >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 672 | echo IGCM_sys_Rm ${generic_file_name}_*.nc >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 673 | SaveOnArchive=false |
---|
| 674 | fi |
---|
[2] | 675 | fi |
---|
[22] | 676 | # |
---|
| 677 | if [ ${SaveOnArchive} = true ] ; then |
---|
| 678 | IGCM_sys_Put_Out ${file_in} ${file_out} |
---|
| 679 | [ $? -eq 0 ] && eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
[2] | 680 | if [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
[22] | 681 | for DelFile in $( ls | grep "${generic_file_name}[_0-9]*.nc" ) ; do |
---|
| 682 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${DelFile} > /dev/null 2>&1 |
---|
| 683 | done |
---|
[2] | 684 | fi |
---|
| 685 | fi |
---|
| 686 | (( i=i+3 )) |
---|
| 687 | done |
---|
| 688 | fi |
---|
| 689 | |
---|
| 690 | # Save Output Text files of models |
---|
| 691 | #--------------------------------- |
---|
| 692 | |
---|
| 693 | IGCM_card_DefineArrayFromOption ${card} OutputText List |
---|
| 694 | ListTextName=${compname}_OutputText_List |
---|
| 695 | |
---|
| 696 | eval TextName0=\${${ListTextName}[0]} > /dev/null 2>&1 |
---|
| 697 | if [ X${TextName0} != X${NULL_STR} ] ; then |
---|
| 698 | eval NbFiles=\${#${ListTextName}[@]} > /dev/null 2>&1 |
---|
| 699 | |
---|
| 700 | (( i=0 )) |
---|
| 701 | until [ $i -eq $NbFiles ]; do |
---|
| 702 | eval file_in=\${${ListTextName}[$i]} > /dev/null 2>&1 |
---|
| 703 | (( i=i+1 )) |
---|
| 704 | |
---|
| 705 | nb_text_file=$( ls ${file_in}* 2>/dev/null | wc -l ) |
---|
| 706 | if [ ${nb_text_file} -gt 1 ] ; then |
---|
| 707 | list_file=$( ls ${file_in}* ) |
---|
| 708 | for file in ${list_file} |
---|
| 709 | do |
---|
| 710 | eval IGCM_sys_Put_Out ${file} \${R_OUT_${comp}_D}/${PREFIX}_${file} |
---|
| 711 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
---|
| 712 | done |
---|
| 713 | else |
---|
| 714 | if ( [ -f ${file_in}_0000 ] || [ -f ${file_in}0 ] ) ; then |
---|
| 715 | eval IGCM_sys_Mv ${file_in}* ${file_in} |
---|
| 716 | fi |
---|
| 717 | eval IGCM_sys_Put_Out ${file_in} \${R_OUT_${comp}_D}/${PREFIX}_${file_in} |
---|
| 718 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
| 719 | fi |
---|
| 720 | done |
---|
| 721 | fi |
---|
| 722 | done |
---|
| 723 | |
---|
| 724 | IGCM_debug_PopStack "IGCM_comp_Finalize" |
---|
| 725 | } |
---|