[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #======================================================================== |
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| 15 | function IGCM_comp_Initialize |
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| 16 | { |
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| 17 | IGCM_debug_PushStack "IGCM_comp_Initialize" |
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| 18 | |
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| 19 | # Debug Print : |
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| 20 | echo |
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| 21 | IGCM_debug_Print 1 "IGCM_comp_Initialize :" |
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| 22 | echo |
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| 23 | |
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[155] | 24 | typeset comp compname comptagname CompatibilityTag auxprint card_UserChoices first_option i j |
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[2] | 25 | for comp in ${config_ListOfComponents[*]} ; do |
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| 26 | # Debug Print |
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| 27 | IGCM_debug_Print 1 ${comp} |
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| 28 | # Define component |
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| 29 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp} |
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| 30 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 31 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 32 | |
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| 33 | # Read libIGCM compatibility version in ${compname}.card |
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| 34 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 35 | IGCM_card_DefineVariableFromOption ${card} Compatibility libIGCM |
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| 36 | eval CompatibilityTag=\${${compname}_Compatibility_libIGCM} > /dev/null 2>&1 |
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| 37 | |
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| 38 | if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then |
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| 39 | IGCM_debug_Exit "${compname}.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ." |
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| 40 | fi |
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| 41 | |
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| 42 | # Manage component executable |
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| 43 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card Executable ${comp} |
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| 44 | |
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| 45 | # Read component Write Frequency in config.card |
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| 46 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} WriteFrequency |
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| 47 | # Debug Print : |
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| 48 | eval auxprint=\${config_${comp}_WriteFrequency} |
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| 49 | IGCM_debug_Print 1 "Write frequency for ${compname} : ${auxprint} " |
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| 50 | #2> /dev/null |
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| 51 | |
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| 52 | # Debug Print : |
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| 53 | IGCM_debug_Print 1 "Initialize following component library :" |
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| 54 | IGCM_debug_Print 1 ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 55 | IGCM_debug_Print 3 "With tag : ${comptagname}" |
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| 56 | # Source component library |
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| 57 | . ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 58 | |
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| 59 | # Debug Print |
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| 60 | IGCM_debug_Print 3 "Initialize ${comp} output directory." |
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| 61 | # Define Dirs |
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| 62 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 63 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}} |
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| 64 | |
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| 65 | eval R_OUT_${comp}_O=\${R_OUT_${comp}}/Output |
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| 66 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_O} |
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| 67 | |
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| 68 | eval R_OUT_${comp}_R=\${R_OUT_${comp}}/Restart |
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| 69 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_R} |
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| 70 | |
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| 71 | eval R_OUT_${comp}_D=\${R_OUT_${comp}}/Debug |
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| 72 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_D} |
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| 73 | |
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| 74 | eval R_OUT_${comp}_O_I=\${R_OUT_${comp}_O}/INS |
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| 75 | eval R_OUT_${comp}_O_H=\${R_OUT_${comp}_O}/HF |
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| 76 | eval R_OUT_${comp}_O_D=\${R_OUT_${comp}_O}/DA |
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| 77 | eval R_OUT_${comp}_O_M=\${R_OUT_${comp}_O}/MO |
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| 78 | eval R_OUT_${comp}_O_Y=\${R_OUT_${comp}_O}/YE |
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| 79 | |
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| 80 | # Read UserChoices section of component card |
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[149] | 81 | IGCM_debug_Print 1 "DefineArrayFromSection : ${compname}_UserChoices ${card}" |
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[2] | 82 | IGCM_card_DefineArrayFromSection ${card} UserChoices |
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| 83 | eval first_option=\${${compname}_UserChoices[0]} > /dev/null 2>&1 |
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| 84 | if [ X${first_option} != X"Error:" ] ; then |
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| 85 | eval IGCM_debug_Print 2 "${compname}_UserChoices_Options:" \${${compname}_UserChoices[*]} |
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| 86 | if [ X${card_UserChoices[0]} != X ] ; then |
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| 87 | unset card_UserChoices |
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| 88 | fi |
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| 89 | eval set +A card_UserChoices -- \${${compname}_UserChoices[*]} > /dev/null 2>&1 |
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| 90 | typeset option |
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| 91 | for option in ${card_UserChoices[*]} ; do |
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| 92 | IGCM_card_DefineVariableFromOption ${card} UserChoices ${option} |
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[100] | 93 | eval IGCM_debug_Print 3 "${compname}_UserChoices_values: ${option} \${card_UserChoices_${option}}" |
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[2] | 94 | done |
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| 95 | fi |
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| 96 | |
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[149] | 97 | # Read and Build Output File stuff |
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| 98 | IGCM_debug_Print 1 "DefineArrayFromOption : ${compname}_OutputFiles ${card}" |
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| 99 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 100 | ListFilesName=${compname}_OutputFiles_List |
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| 101 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 102 | # |
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| 103 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 104 | # |
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| 105 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 106 | # |
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| 107 | # INITIALISATION |
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| 108 | # |
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| 109 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[365] | 110 | # |
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[155] | 111 | i=2 |
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[149] | 112 | # |
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| 113 | until [ $i -ge $NbFiles ]; do |
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| 114 | # |
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| 115 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 116 | # |
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| 117 | if [ X${flag_post} != XNONE ] ; then |
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[239] | 118 | # |
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| 119 | # First of all |
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| 120 | # |
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| 121 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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| 122 | # |
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| 123 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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| 124 | # |
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| 125 | # variable option allready typeset above |
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| 126 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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| 127 | if [ ${option} = Seasonal ] ; then |
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| 128 | FoundSeasonal=true |
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| 129 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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| 130 | fi |
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| 131 | done |
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| 132 | # |
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| 133 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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| 134 | eval ${compname}_${flag_post}_Seasonal=ON |
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| 135 | fi |
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| 136 | # |
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| 137 | if [ $( eval echo \${${compname}_${flag_post}_Seasonal} ) = ON ] ; then |
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| 138 | Seasonal=true |
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| 139 | fi |
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| 140 | |
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[149] | 141 | # Dimension = vide si vieille card. |
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| 142 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars |
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| 143 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} Patches |
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[247] | 144 | if [ X"$( eval echo \${${compname}_${flag_post}_TimeSeriesVars[*]} )" = X"Option not found ${flag_post}" ] ; then |
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[149] | 145 | # New TimeSeriesVar description, with 2D, 3D and associate ChunckJob. |
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[152] | 146 | ListDimension[0]=2D |
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| 147 | ListDimension[1]=3D |
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[149] | 148 | TimeSeries=false |
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[152] | 149 | iLoop=${#ListDimension[*]} |
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[155] | 150 | j=0 |
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| 151 | until [ $j -ge ${iLoop} ]; do |
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| 152 | Dimension=${ListDimension[${j}]} |
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[149] | 153 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars${Dimension} |
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| 154 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} ChunckJob${Dimension} |
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| 155 | # |
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| 156 | # Time series WITHOUT chunk |
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| 157 | # |
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| 158 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 159 | if [ $( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) = NONE ] ; then |
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[380] | 160 | IGCM_debug_Print 3 "${Dimension} time series activated for ${flag_post}" |
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[149] | 161 | eval TimeSeries${Dimension}=true |
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| 162 | fi |
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| 163 | fi |
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| 164 | # |
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| 165 | # Time series WITH chunk |
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| 166 | # |
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| 167 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 168 | chunck_size=$( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) |
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[237] | 169 | if [ ! ${chunck_size} = NONE ] && [ ! ${chunck_size} = OFF ] ; then |
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[380] | 170 | IGCM_debug_Print 3 "${Dimension} time series activated with chunck for ${flag_post}" |
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[149] | 171 | eval TimeSeriesChunck${Dimension}=true |
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| 172 | eval set +A CHUNCK${Dimension}_COMP \${CHUNCK${Dimension}_COMP[*]} ${comp} |
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| 173 | eval set +A CHUNCK${Dimension}_FLAG \${CHUNCK${Dimension}_FLAG[*]} ${i} |
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[387] | 174 | eval set +A CHUNCK${Dimension}_NAME \${CHUNCK${Dimension}_NAME[*]} ${flag_post} |
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[149] | 175 | eval set +A CHUNCK${Dimension}_SIZE \${CHUNCK${Dimension}_SIZE[*]} ${chunck_size} |
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| 176 | fi |
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| 177 | fi |
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[155] | 178 | (( j=j+1 )) |
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[149] | 179 | done |
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| 180 | else |
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[152] | 181 | ListDimension[0]="" |
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[149] | 182 | TimeSeries=true |
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| 183 | TimeSeries2D=false |
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| 184 | TimeSeries3D=false |
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| 185 | TimeSeriesChunck2D=false |
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| 186 | TimeSeriesChunck3D=false |
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| 187 | fi |
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| 188 | fi |
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| 189 | (( i=i+3 )) |
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| 190 | done |
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| 191 | fi |
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[2] | 192 | # Debug Print |
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| 193 | IGCM_debug_Print 3 "Initialize ${compname} with driver." |
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| 194 | # INIT component |
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| 195 | ${comp}_Initialize |
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| 196 | echo |
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| 197 | done |
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| 198 | echo "-----" |
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| 199 | echo |
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| 200 | IGCM_debug_Print 1 "DefineArrayFromOption : ListOfComponents" |
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| 201 | IGCM_debug_PrintVariables 3 config_ListOfComponents |
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| 202 | |
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| 203 | IGCM_debug_PopStack "IGCM_comp_Initialize" |
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| 204 | } |
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| 205 | |
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| 206 | #======================================================================= |
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| 207 | function IGCM_comp_PrepareDeletedFiles |
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| 208 | { |
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| 209 | IGCM_debug_PushStack "IGCM_comp_PrepareDeletedFiles" $@ |
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| 210 | |
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| 211 | if [ X${2} != X. ] ; then |
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| 212 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${2} ) > /dev/null 2>&1 |
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| 213 | else |
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| 214 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${1} ) > /dev/null 2>&1 |
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| 215 | fi |
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| 216 | |
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| 217 | IGCM_debug_PopStack "IGCM_comp_PrepareDeletedFiles" |
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| 218 | } |
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| 219 | |
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| 220 | #======================================================================= |
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| 221 | function IGCM_comp_GetInputInitialStateFiles |
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| 222 | { |
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| 223 | IGCM_debug_PushStack "IGCM_comp_GetInputInitialStateFiles" |
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| 224 | |
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| 225 | # Debug Print : |
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| 226 | echo |
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| 227 | IGCM_debug_Print 1 "IGCM_comp_GetInputInitialStateFiles :" |
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| 228 | echo |
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| 229 | |
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| 230 | # Only the first time step need InitialStateFiles |
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| 231 | # otherwise it's BoundaryConditions |
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| 232 | if ( ${FirstInitialize} ) ; then |
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| 233 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 234 | typeset file_in_ file_in file_out_ file_out do_init |
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| 235 | for comp in ${config_ListOfComponents[*]} ; do |
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| 236 | # Initialize |
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| 237 | do_init="y" |
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| 238 | # Do we need to bring initial state file for this component |
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| 239 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
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| 240 | eval do_init="n" |
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| 241 | else |
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| 242 | # Read component Restarts parameters |
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| 243 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
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| 244 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 245 | if [ "${do_start}" = "y" ] ; then |
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| 246 | do_init="n" |
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| 247 | else |
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| 248 | do_init="y" |
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| 249 | fi |
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| 250 | fi |
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| 251 | |
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| 252 | if [ "${do_init}" = "y" ] ; then |
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| 253 | # Define component |
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| 254 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 255 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 256 | |
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| 257 | # Debug Print : |
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| 258 | IGCM_debug_Print 3 "Initialisation files ${compname}" |
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| 259 | |
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| 260 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 261 | |
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| 262 | IGCM_card_DefineArrayFromOption ${card} InitialStateFiles List |
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| 263 | ListFilesName=${compname}_InitialStateFiles_List |
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| 264 | |
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| 265 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 266 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 267 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 268 | (( i=0 )) |
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| 269 | until [ $i -ge $NbFiles ]; do |
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| 270 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 271 | eval file_in=${file_in_} |
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| 272 | (( i_ = i+1 )) |
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| 273 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 274 | eval file_out=${file_out_} |
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| 275 | |
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| 276 | IGCM_sys_Get ${file_in} ${file_out} |
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[159] | 277 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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[2] | 278 | |
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| 279 | (( i=i+2 )) |
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| 280 | done |
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| 281 | fi |
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| 282 | fi |
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| 283 | done |
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| 284 | fi |
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| 285 | IGCM_debug_PopStack "IGCM_comp_GetInputInitialStateFiles" |
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| 286 | } |
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| 287 | |
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| 288 | #======================================================================= |
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[247] | 289 | # Definition of Smooth modulo function |
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| 290 | # usage : |
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| 291 | # IGCM_SmoothModulo StringModulo value |
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| 292 | # |
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| 293 | # StringModulo : A string of min max and modulo like definition of Scilab vectors. |
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| 294 | # [min]:[modulo:][max] |
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| 295 | # where : |
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| 296 | # [] value are optionnals; |
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| 297 | # empty min equal 1 |
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| 298 | # empty max equal infinity |
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| 299 | # modulo not given or empty equal 1 |
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| 300 | # empty string or just ':' equal always. |
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| 301 | # |
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| 302 | # value : the value to test with the definition |
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| 303 | # |
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| 304 | # return : true(1)/false(0) |
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| 305 | function IGCM_SmoothModulo |
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| 306 | { |
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| 307 | IGCM_debug_PushStack "IGCM_SmoothModulo" |
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| 308 | typeset defVector ModValue |
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| 309 | |
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| 310 | eval set +A defVector -- $( echo "${1}" | \ |
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| 311 | gawk -F ':' '{print ($1 == "" ? 1 : $1) " " (NF==3 ? ($2 == "" ? 1 : $2) : 1) " " (NF==3 ? ($3 == "" ? -1 : $3) : ($2 == "" ? -1 : $2))}' ) |
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| 312 | |
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| 313 | # Test limits : |
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| 314 | # ${defVector[0]} <= ${2} <= ${defVector[2]} |
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| 315 | # or ${defVector[2]} == -1 |
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| 316 | if ( [ ${2} -ge ${defVector[0]} ] && \ |
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| 317 | ( [ ${2} -le ${defVector[2]} ] || \ |
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| 318 | [ ${defVector[2]} -lt 0 ] ) ) ; then |
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| 319 | |
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| 320 | # Test modulo |
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| 321 | ModValue=$( expr \( ${2} - ${defVector[0]} \) % ${defVector[1]} ) |
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| 322 | if [ ${ModValue} -eq 0 ] ; then |
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| 323 | echo true |
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| 324 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 325 | return 1 |
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| 326 | else |
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| 327 | echo false |
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| 328 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 329 | return 0 |
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| 330 | fi |
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| 331 | else |
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| 332 | echo false |
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| 333 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 334 | return 0 |
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| 335 | fi |
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| 336 | } |
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| 337 | |
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| 338 | #======================================================================= |
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| 339 | function IGCM_comp_GetInputSmoothFiles |
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| 340 | { |
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| 341 | IGCM_debug_PushStack "IGCM_comp_GetInputSmoothFiles" |
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| 342 | |
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| 343 | # Debug Print : |
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| 344 | echo |
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| 345 | IGCM_debug_Print 1 "IGCM_comp_GetInputSmoothFiles :" |
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| 346 | echo |
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| 347 | |
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| 348 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ i__ |
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| 349 | typeset file_in_ file_in file_out_ file_out ret SmoothDef |
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| 350 | |
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| 351 | for comp in ${config_ListOfComponents[*]} ; do |
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| 352 | |
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| 353 | echo "-----" |
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| 354 | # Define component |
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| 355 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 356 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 357 | |
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| 358 | # Debug Print : |
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| 359 | IGCM_debug_Print 3 "Smooth files ${compname}" |
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| 360 | |
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| 361 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 362 | |
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| 363 | IGCM_card_DefineArrayFromOption ${card} SmoothFiles List |
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| 364 | ListFilesName=${compname}_SmoothFiles_List |
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| 365 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 366 | |
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[270] | 367 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != X"Section" ] ) ; then |
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[247] | 368 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 369 | |
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| 370 | (( i=0 )) |
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| 371 | until [ $i -ge $NbFiles ]; do |
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| 372 | |
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| 373 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 374 | eval file_in=${file_in_} |
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| 375 | (( i_ = i+1 )) |
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| 376 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 377 | eval file_out=${file_out_} |
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| 378 | |
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| 379 | # define CumulPeriod definition for this file |
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| 380 | (( i__ = i+2 )) |
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| 381 | eval SmoothDef=\${${ListFilesName}[$i__]} |
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| 382 | IGCM_debug_Print 3 " ${file_in} ${SmoothDef}" |
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| 383 | eval ret=$( IGCM_SmoothModulo ${SmoothDef} ${CumulPeriod} ) |
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[260] | 384 | if ( [ X${ret} = Xtrue ] || [ ${Period} -eq 1 ] ) ; then |
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[247] | 385 | IGCM_sys_Get ${file_in} ${file_out} |
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| 386 | |
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[260] | 387 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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[247] | 388 | fi |
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| 389 | (( i=i+3 )) |
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| 390 | done |
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| 391 | fi |
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| 392 | done |
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| 393 | |
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| 394 | IGCM_debug_PopStack "IGCM_comp_GetInputSmoothFiles" |
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| 395 | } |
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| 396 | |
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| 397 | #======================================================================= |
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[2] | 398 | function IGCM_comp_GetInputBoundaryFiles |
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| 399 | { |
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| 400 | IGCM_debug_PushStack "IGCM_comp_GetInputBoundaryFiles" |
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| 401 | |
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| 402 | # Debug Print : |
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| 403 | echo |
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| 404 | IGCM_debug_Print 1 "IGCM_comp_GetInputBoundaryFiles :" |
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| 405 | echo |
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| 406 | |
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| 407 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 408 | typeset file_in_ file_in file_out_ file_out |
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| 409 | |
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| 410 | if [ ${Period} = 1 ]; then |
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| 411 | ListFixBoundary=" " |
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| 412 | fi |
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| 413 | |
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| 414 | for comp in ${config_ListOfComponents[*]} ; do |
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| 415 | |
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| 416 | echo "-----" |
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| 417 | # Define component |
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| 418 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 419 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 420 | |
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| 421 | # Debug Print : |
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| 422 | IGCM_debug_Print 3 "Boundary files ${compname}" |
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| 423 | |
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| 424 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 425 | |
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| 426 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles List |
---|
| 427 | ListFilesName=${compname}_BoundaryFiles_List |
---|
| 428 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 429 | |
---|
| 430 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 431 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 432 | |
---|
| 433 | (( i=0 )) |
---|
| 434 | until [ $i -ge $NbFiles ]; do |
---|
| 435 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 436 | eval file_in=${file_in_} |
---|
| 437 | (( i_ = i+1 )) |
---|
| 438 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 439 | eval file_out=${file_out_} |
---|
| 440 | |
---|
| 441 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 442 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 443 | |
---|
| 444 | (( i=i+2 )) |
---|
| 445 | done |
---|
| 446 | fi |
---|
| 447 | |
---|
| 448 | # Get non deleted files |
---|
| 449 | if [ ${Period} = 1 ]; then |
---|
| 450 | |
---|
| 451 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles ListNonDel |
---|
| 452 | ListFilesName=${compname}_BoundaryFiles_ListNonDel |
---|
| 453 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 454 | |
---|
| 455 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 456 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 457 | |
---|
| 458 | (( i=0 )) |
---|
| 459 | until [ $i -ge $NbFiles ]; do |
---|
| 460 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 461 | eval file_in=${file_in_} |
---|
| 462 | (( i_ = i+1 )) |
---|
| 463 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 464 | eval file_out=${file_out_} |
---|
| 465 | |
---|
| 466 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 467 | |
---|
| 468 | if [ X${file_out} != X. ] ; then |
---|
| 469 | ListFixBoundary=${ListFixBoundary}" "${file_out} |
---|
| 470 | else |
---|
| 471 | ListFixBoundary=${ListFixBoundary}" "$( basename ${file_in} ) |
---|
| 472 | fi |
---|
| 473 | |
---|
| 474 | (( i=i+2 )) |
---|
| 475 | done |
---|
| 476 | fi |
---|
| 477 | fi |
---|
| 478 | done |
---|
| 479 | |
---|
| 480 | IGCM_debug_PopStack "IGCM_comp_GetInputBoundaryFiles" |
---|
| 481 | } |
---|
| 482 | |
---|
| 483 | #======================================================================= |
---|
| 484 | function IGCM_comp_DelFixeBoundaryFiles |
---|
| 485 | { |
---|
| 486 | IGCM_debug_PushStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
| 487 | |
---|
| 488 | # Debug Print : |
---|
| 489 | echo |
---|
| 490 | IGCM_debug_Print 1 "IGCM_comp_DelFixeBoundaryFiles :" |
---|
| 491 | echo |
---|
| 492 | |
---|
| 493 | ls -l ${ListFixBoundary} |
---|
| 494 | rm -f ${ListFixBoundary} |
---|
| 495 | |
---|
| 496 | IGCM_debug_PopStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
| 497 | } |
---|
| 498 | |
---|
| 499 | #======================================================================= |
---|
| 500 | function IGCM_comp_GetInputParametersFiles |
---|
| 501 | { |
---|
| 502 | IGCM_debug_PushStack "IGCM_comp_GetInputParametersFiles" |
---|
| 503 | |
---|
| 504 | # Debug Print : |
---|
| 505 | echo |
---|
| 506 | IGCM_debug_Print 1 "IGCM_comp_GetInputParametersFiles :" |
---|
| 507 | echo |
---|
| 508 | |
---|
| 509 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ file_in file_out |
---|
| 510 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 511 | # Define component |
---|
| 512 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 513 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 514 | |
---|
| 515 | # Debug Print : |
---|
| 516 | IGCM_debug_Print 3 "Parameters ${compname}" |
---|
| 517 | |
---|
| 518 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 519 | |
---|
| 520 | IGCM_card_DefineArrayFromOption ${card} ParametersFiles List |
---|
| 521 | ListFilesName=${compname}_ParametersFiles_List |
---|
| 522 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 523 | |
---|
| 524 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 525 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 526 | |
---|
| 527 | (( i=0 )) |
---|
| 528 | until [ $i -ge $NbFiles ]; do |
---|
| 529 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 530 | eval file_in=${file_in_} |
---|
| 531 | (( i_ = i+1 )) |
---|
| 532 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 533 | eval file_out=${file_out_} |
---|
| 534 | |
---|
| 535 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 536 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 537 | |
---|
| 538 | (( i=i+2 )) |
---|
| 539 | done |
---|
| 540 | fi |
---|
| 541 | done |
---|
| 542 | |
---|
| 543 | IGCM_debug_PopStack "IGCM_comp_GetInputParametersFiles" |
---|
| 544 | } |
---|
| 545 | |
---|
| 546 | #======================================================================= |
---|
| 547 | function IGCM_comp_GetInputRestartFiles |
---|
| 548 | { |
---|
| 549 | IGCM_debug_PushStack "IGCM_comp_GetInputRestartFiles" |
---|
| 550 | |
---|
| 551 | # Debug Print : |
---|
| 552 | echo |
---|
| 553 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles :" |
---|
| 554 | echo |
---|
| 555 | |
---|
[38] | 556 | typeset Date_tmp Date_r Path_r do_start CompOldName Path_temp |
---|
[2] | 557 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
---|
| 558 | typeset file_in file_out file_in_ file_out_ file_in_Name |
---|
[38] | 559 | typeset -Z4 j4 |
---|
[2] | 560 | |
---|
| 561 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 562 | # Define component |
---|
| 563 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 564 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[151] | 565 | # |
---|
| 566 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 567 | # |
---|
| 568 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 569 | ListFilesName=${compname}_RestartFiles_List |
---|
| 570 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 571 | |
---|
| 572 | # Debug Print : |
---|
| 573 | IGCM_debug_Print 3 "restart ${compname}" |
---|
| 574 | |
---|
| 575 | if ( ${FirstInitialize} ) ; then |
---|
| 576 | |
---|
| 577 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
---|
| 578 | eval config_${comp}_Restart="y" |
---|
| 579 | eval config_${comp}_RestartDate=${config_Restarts_RestartDate} |
---|
| 580 | eval config_${comp}_RestartJobName=${config_Restarts_RestartJobName} |
---|
| 581 | eval config_${comp}_RestartPath=${config_Restarts_RestartPath} |
---|
| 582 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
| 583 | eval CompOldName=${comp} |
---|
| 584 | else |
---|
| 585 | # Read component Restarts parameters |
---|
| 586 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
---|
| 587 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
| 588 | |
---|
| 589 | if [ "${do_start}" = "y" ] ; then |
---|
| 590 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartDate |
---|
| 591 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartJobName |
---|
| 592 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartPath |
---|
| 593 | else |
---|
| 594 | eval config_${comp}_RestartDate=-1 |
---|
| 595 | eval config_${comp}_RestartJobName=${NULL_STR} |
---|
| 596 | eval config_${comp}_RestartPath=${NULL_STR} |
---|
| 597 | fi |
---|
| 598 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} OldName |
---|
| 599 | eval CompOldName=\${config_${comp}_OldName} |
---|
| 600 | if [ X${CompOldName} = X ] ; then |
---|
| 601 | eval CompOldName=${comp} |
---|
| 602 | fi |
---|
| 603 | fi |
---|
| 604 | |
---|
| 605 | if [ "${do_start}" = "y" ] ; then |
---|
| 606 | |
---|
| 607 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 608 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 609 | |
---|
| 610 | (( i=1 )) |
---|
| 611 | until [ $i -gt $NbFiles ]; do |
---|
| 612 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 613 | eval file_in=${file_in_} |
---|
| 614 | |
---|
| 615 | (( i_ = i+1 )) |
---|
| 616 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 617 | eval file_out=${file_out_} |
---|
| 618 | |
---|
| 619 | eval Date_tmp=\${config_${comp}_RestartDate} |
---|
| 620 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${Date_tmp} ) |
---|
| 621 | eval Path_r=\${config_${comp}_RestartPath}/\${config_${comp}_RestartJobName}/${CompOldName}/Restart |
---|
| 622 | eval file_in_Name=\${config_${comp}_RestartJobName}_${Date_r}_${file_in} |
---|
| 623 | |
---|
[38] | 624 | generic_restart_file_name_in=$( basename ${file_in_Name} .nc ) |
---|
| 625 | generic_restart_file_name_out=$( basename ${file_out} .nc ) |
---|
| 626 | |
---|
| 627 | eval Path_temp=\${Path_r}/${generic_restart_file_name_in} |
---|
[67] | 628 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_temp}_????.nc) |
---|
[2] | 629 | |
---|
[41] | 630 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 631 | j=0 |
---|
| 632 | until [ $j -ge $nb_restart_file ]; do |
---|
| 633 | j4=${j} |
---|
| 634 | eval IGCM_sys_Get ${Path_r}/${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
[151] | 635 | #IGCM_comp_PrepareDeletedFiles ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 636 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_out}_${j4}.nc" > /dev/null 2>&1 |
---|
[41] | 637 | (( j=j+1 )) |
---|
| 638 | done |
---|
| 639 | else |
---|
[38] | 640 | eval IGCM_sys_Get ${Path_r}/${file_in_Name} ${file_out} |
---|
[151] | 641 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[41] | 642 | fi |
---|
[2] | 643 | |
---|
| 644 | (( i=i+3 )) |
---|
| 645 | done |
---|
| 646 | else |
---|
| 647 | if [ X${FileName0} != XNONE ] ; then |
---|
| 648 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 649 | else |
---|
| 650 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 651 | fi |
---|
| 652 | fi |
---|
| 653 | fi |
---|
[151] | 654 | elif [ ${Period} -eq 1 ] ; then |
---|
| 655 | # if not FirstInitialize and first loop of this job |
---|
[2] | 656 | |
---|
| 657 | # Restore Restarts files |
---|
| 658 | #----------------------- |
---|
| 659 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 660 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 661 | |
---|
| 662 | (( i=1 )) |
---|
| 663 | until [ $i -gt $NbFiles ]; do |
---|
| 664 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 665 | eval file_in=${file_in_} |
---|
| 666 | (( i_ = i+1 )) |
---|
| 667 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 668 | eval file_out=${file_out_} |
---|
| 669 | |
---|
| 670 | file_in_Name=${run_Configuration_OldPrefix}_${file_in} |
---|
| 671 | |
---|
[38] | 672 | generic_restart_file_name_in=$( basename ${file_in_Name} .nc ) |
---|
| 673 | generic_restart_file_name_out=$( basename ${file_out} .nc ) |
---|
[2] | 674 | |
---|
[38] | 675 | eval Path_temp=\${R_OUT_${comp}_R}/${generic_restart_file_name_in} |
---|
[67] | 676 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_temp}_????.nc) |
---|
| 677 | |
---|
[41] | 678 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 679 | j=0 |
---|
| 680 | until [ $j -ge $nb_restart_file ]; do |
---|
| 681 | j4=${j} |
---|
| 682 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
[151] | 683 | #IGCM_comp_PrepareDeletedFiles ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 684 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_out}_${j4}.nc" > /dev/null 2>&1 |
---|
[41] | 685 | |
---|
| 686 | (( j=j+1 )) |
---|
| 687 | done |
---|
| 688 | else |
---|
[38] | 689 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${file_in_Name} ${file_out} |
---|
[151] | 690 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[41] | 691 | fi |
---|
[38] | 692 | |
---|
[2] | 693 | (( i=i+3 )) |
---|
| 694 | done |
---|
| 695 | else |
---|
| 696 | if [ X${FileName0} != XNONE ] ; then |
---|
| 697 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 698 | else |
---|
| 699 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 700 | fi |
---|
| 701 | fi |
---|
| 702 | fi |
---|
| 703 | done |
---|
[92] | 704 | IGCM_sys_Chmod u+rw * |
---|
[2] | 705 | |
---|
| 706 | IGCM_debug_PopStack "IGCM_comp_GetInputRestartFiles" |
---|
| 707 | } |
---|
| 708 | |
---|
| 709 | #======================================================================= |
---|
[269] | 710 | function IGCM_comp_PeriodStart |
---|
| 711 | { |
---|
| 712 | IGCM_debug_PushStack "IGCM_comp_PeriodStart" |
---|
| 713 | |
---|
| 714 | # Debug Print : |
---|
| 715 | echo |
---|
| 716 | IGCM_debug_Print 1 "IGCM_comp_PeriodStart :" |
---|
| 717 | echo |
---|
| 718 | |
---|
| 719 | typeset ExeNameIn ExeNameOut |
---|
| 720 | typeset comp compname comptagname |
---|
| 721 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 722 | # Define component |
---|
| 723 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 724 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 725 | |
---|
| 726 | # Copy executable for this component |
---|
| 727 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 728 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 729 | |
---|
| 730 | # Debug Print |
---|
| 731 | IGCM_debug_Print 3 "PeriodStart ${compname} Driver Function (if any)." |
---|
| 732 | # UPDATE component |
---|
| 733 | ${comp}_PeriodStart 2> /dev/null |
---|
| 734 | |
---|
| 735 | done |
---|
| 736 | |
---|
| 737 | IGCM_debug_PopStack "IGCM_comp_PeriodStart" |
---|
| 738 | } |
---|
| 739 | |
---|
| 740 | #======================================================================= |
---|
[2] | 741 | function IGCM_comp_Update |
---|
| 742 | { |
---|
| 743 | IGCM_debug_PushStack "IGCM_comp_Update" |
---|
| 744 | |
---|
| 745 | # Debug Print : |
---|
| 746 | echo |
---|
| 747 | IGCM_debug_Print 1 "IGCM_comp_Update :" |
---|
| 748 | echo |
---|
| 749 | |
---|
| 750 | typeset ExeNameIn ExeNameOut |
---|
| 751 | typeset comp compname comptagname |
---|
| 752 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 753 | # Define component |
---|
| 754 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 755 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 756 | |
---|
| 757 | # Copy executable for this component |
---|
| 758 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 759 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[151] | 760 | |
---|
[236] | 761 | # If missing executable then stop! |
---|
[237] | 762 | #if [ ! X${ExeNameIn} = X ] && [ ! -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 763 | # IGCM_debug_Exit "IGCM_comp_Update missing executable ${ExeNameIn}" |
---|
| 764 | #fi |
---|
[236] | 765 | |
---|
[151] | 766 | if [ ${Period} -eq 1 ] && [ -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
[2] | 767 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 768 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 769 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
[151] | 770 | fi |
---|
| 771 | elif [ -f ${R_EXE}/${ExeNameIn} ] && [ ! -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 772 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 773 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 774 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 775 | fi |
---|
[2] | 776 | fi |
---|
| 777 | |
---|
| 778 | # Debug Print |
---|
| 779 | IGCM_debug_Print 3 "Update ${compname} Parameter Files." |
---|
| 780 | # UPDATE component |
---|
| 781 | ${comp}_Update |
---|
| 782 | |
---|
| 783 | done |
---|
| 784 | |
---|
| 785 | IGCM_debug_PopStack "IGCM_comp_Update" |
---|
| 786 | } |
---|
| 787 | |
---|
| 788 | #======================================================================= |
---|
| 789 | function IGCM_comp_Finalize |
---|
| 790 | { |
---|
| 791 | IGCM_debug_PushStack "IGCM_comp_Finalize" |
---|
| 792 | |
---|
| 793 | # Debug Print : |
---|
| 794 | echo |
---|
| 795 | IGCM_debug_Print 1 "IGCM_comp_Finalize :" |
---|
| 796 | echo |
---|
| 797 | |
---|
| 798 | typeset ListTextName TextName0 |
---|
[22] | 799 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles SaveOnArchive |
---|
[151] | 800 | typeset i i_ file_in file_in_ file_out file_out_ file_outin file_outin_ generic_file_name nb_rebuild_file |
---|
[38] | 801 | typeset -Z4 j4 |
---|
[2] | 802 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 803 | # Define component |
---|
| 804 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 805 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 806 | |
---|
| 807 | # Debug Print |
---|
| 808 | IGCM_debug_Print 1 "Finalize ${compname} component." |
---|
| 809 | # FINALIZE component |
---|
| 810 | ${comp}_Finalize |
---|
| 811 | |
---|
| 812 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 813 | |
---|
| 814 | # Save Restarts files |
---|
| 815 | #-------------------- |
---|
| 816 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 817 | ListFilesName=${compname}_RestartFiles_List |
---|
| 818 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 819 | |
---|
| 820 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 821 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 822 | |
---|
| 823 | (( i=0 )) |
---|
| 824 | until [ $i -ge $NbFiles ]; do |
---|
| 825 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 826 | eval file_in=${file_in_} |
---|
| 827 | |
---|
| 828 | (( i_ = i+1 )) |
---|
| 829 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 830 | eval file_out=${file_out_} |
---|
[151] | 831 | |
---|
| 832 | (( i_ = i+2 )) |
---|
| 833 | eval file_outin_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 834 | eval file_outin=${file_outin_} |
---|
| 835 | |
---|
| 836 | generic_restart_file_name_in=$( basename ${file_in} .nc ) |
---|
| 837 | generic_restart_file_name_out=$( basename ${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} .nc ) |
---|
| 838 | generic_restart_file_name_outin=$( basename ${file_outin} .nc ) |
---|
[38] | 839 | |
---|
[42] | 840 | nb_restart_file=$( ls ${generic_restart_file_name_in}_????.nc 2>/dev/null | wc -l ) |
---|
[41] | 841 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 842 | j=0 |
---|
| 843 | until [ $j -ge $nb_restart_file ]; do |
---|
| 844 | j4=${j} |
---|
| 845 | eval IGCM_sys_Put_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_OUT_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
[296] | 846 | if [ ! ${file_in} = ${file_outin} ] ; then |
---|
| 847 | if ( ${ExitFlag} ) ; then |
---|
| 848 | echo "IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc not executed." |
---|
| 849 | else |
---|
| 850 | IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc |
---|
| 851 | fi |
---|
| 852 | fi |
---|
[151] | 853 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_in}_${j4}.nc" > /dev/null 2>&1 |
---|
[41] | 854 | (( j=j+1 )) |
---|
| 855 | done |
---|
| 856 | else |
---|
[38] | 857 | eval IGCM_sys_Put_Rest ${file_in} \${R_OUT_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
[296] | 858 | if [ ! ${file_in} = ${file_outin} ] ; then |
---|
| 859 | if ( ${ExitFlag} ) ; then |
---|
| 860 | echo "IGCM_sys_Mv ${file_in} ${file_outin} not executed." |
---|
| 861 | else |
---|
| 862 | IGCM_sys_Mv ${file_in} ${file_outin} |
---|
| 863 | fi |
---|
| 864 | fi |
---|
[151] | 865 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
[41] | 866 | fi |
---|
[2] | 867 | |
---|
| 868 | (( i=i+3 )) |
---|
| 869 | done |
---|
| 870 | else |
---|
| 871 | if [ X${FileName0} != XNONE ] ; then |
---|
| 872 | IGCM_debug_Exit "IGCM_comp_Finalize : No file in restart list for ${compname}." |
---|
| 873 | else |
---|
| 874 | IGCM_debug_Print 1 "IGCM_comp_Finalize : NONE specified in Restart List ${compname}." |
---|
| 875 | fi |
---|
| 876 | fi |
---|
| 877 | |
---|
| 878 | # Save Output files |
---|
| 879 | #------------------ |
---|
| 880 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 881 | ListFilesName=${compname}_OutputFiles_List |
---|
| 882 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 883 | |
---|
| 884 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 885 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 886 | |
---|
| 887 | (( i=0 )) |
---|
| 888 | until [ $i -ge $NbFiles ]; do |
---|
[22] | 889 | SaveOnArchive=true |
---|
[2] | 890 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 891 | eval file_in=${file_in_} |
---|
| 892 | (( i_ = i+1 )) |
---|
| 893 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 894 | eval file_out=${file_out_} |
---|
[149] | 895 | (( i_ = i+2 )) |
---|
| 896 | eval flag_post=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
[22] | 897 | # |
---|
[2] | 898 | generic_file_name=$( basename ${file_in} .nc ) |
---|
[306] | 899 | nb_rebuild_file=$( ls | grep "^${generic_file_name}_[0-9]*.nc" | wc -l ) |
---|
[22] | 900 | # |
---|
| 901 | if ( [ ${nb_rebuild_file} -eq 1 ] && [ -f ${generic_file_name}_0000.nc ] ) ; then |
---|
| 902 | IGCM_debug_Print 2 "Parallelism with 1 process. Rebuilding ${file_in} not needed" |
---|
[2] | 903 | IGCM_sys_Mv ${generic_file_name}_0000.nc ${file_in} |
---|
[22] | 904 | elif [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 905 | IGCM_debug_Print 2 "Parallelism detected rebuilding ${file_in} is needed" |
---|
| 906 | if ( [ X${config_Post_RebuildFrequency} = X${NULL_STR} ] || [ X${config_Post_RebuildFrequency} = XNONE ] ) ; then |
---|
| 907 | IGCM_debug_Print 2 "Rebuilding ${file_in} online" |
---|
| 908 | IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc |
---|
| 909 | else |
---|
| 910 | IGCM_debug_Print 2 "Preparing offline rebuild for ${file_in}" |
---|
[34] | 911 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
[22] | 912 | IGCM_sys_Mv ${generic_file_name}_????.nc ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
[149] | 913 | |
---|
[238] | 914 | # Prepare headers for the shell dedicated to offline rebuild |
---|
[22] | 915 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
[238] | 916 | if [ $DRYRUN -le 1 ]; then |
---|
[309] | 917 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[296] | 918 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 919 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[306] | 920 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[296] | 921 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[306] | 922 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[296] | 923 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[380] | 924 | echo "export R_SAVE=${R_SAVE} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 925 | echo "export config_UserChoices_JobName=${config_UserChoices_JobName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[238] | 926 | fi |
---|
[22] | 927 | fi |
---|
| 928 | # Prepare the shell dedicated to offline rebuild |
---|
[238] | 929 | if [ $DRYRUN -le 1 ]; then |
---|
[296] | 930 | echo "IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 931 | echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[238] | 932 | fi |
---|
[149] | 933 | # |
---|
| 934 | # Load Patch we need to apply and apply |
---|
[238] | 935 | if [ $DRYRUN -le 1 ]; then |
---|
| 936 | if [ X$( eval echo \${${compname}_${flag_post}_Patches[0]} ) != X${NULL_STR} ]; then |
---|
| 937 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ); do |
---|
[296] | 938 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 939 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[238] | 940 | done |
---|
| 941 | fi |
---|
[149] | 942 | fi |
---|
| 943 | # |
---|
[238] | 944 | if [ $DRYRUN -le 1 ]; then |
---|
[296] | 945 | echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 946 | echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 947 | echo "IGCM_sys_Rm ${generic_file_name}_*.nc " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[238] | 948 | fi |
---|
[22] | 949 | SaveOnArchive=false |
---|
| 950 | fi |
---|
[2] | 951 | fi |
---|
[22] | 952 | # |
---|
| 953 | if [ ${SaveOnArchive} = true ] ; then |
---|
[149] | 954 | # |
---|
| 955 | # If we need to apply a patch we use TMP DIRECTORY before ARCHIVING if asynchronous rebuild is on |
---|
| 956 | # |
---|
[307] | 957 | thereisapatch=$( eval echo \${${compname}_${flag_post}_Patches[0]} ) |
---|
| 958 | |
---|
| 959 | if ( [ ! X${thereisapatch} = X${NULL_STR} ] && [ ! X${config_Post_RebuildFrequency} = X ] && [ ! X${config_Post_RebuildFrequency} = XNONE ] ) ; then |
---|
[149] | 960 | if [ -f ${file_in} ] ; then |
---|
[307] | 961 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 962 | |
---|
[149] | 963 | IGCM_sys_Mv ${file_in} ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 964 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=REBUILD_${PeriodDateBegin}/${file_in} > /dev/null 2>&1 |
---|
| 965 | # |
---|
[238] | 966 | if [ $DRYRUN -le 1 ]; then |
---|
[307] | 967 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
[318] | 968 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[307] | 969 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 970 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 971 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 972 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 973 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 974 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 975 | fi |
---|
| 976 | # |
---|
[238] | 977 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ); do |
---|
[296] | 978 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 979 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[238] | 980 | done |
---|
| 981 | # |
---|
[296] | 982 | echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 983 | echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[238] | 984 | # |
---|
| 985 | fi |
---|
[149] | 986 | fi |
---|
| 987 | else |
---|
[307] | 988 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 989 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
[318] | 990 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[307] | 991 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 992 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 993 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 994 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 995 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 996 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 997 | fi |
---|
| 998 | |
---|
[149] | 999 | IGCM_sys_Put_Out ${file_in} ${file_out} |
---|
| 1000 | [ $? -eq 0 ] && eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
| 1001 | if [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 1002 | for DelFile in $( ls | grep "${generic_file_name}[_0-9]*.nc" ) ; do |
---|
| 1003 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${DelFile} > /dev/null 2>&1 |
---|
| 1004 | done |
---|
| 1005 | fi |
---|
[2] | 1006 | fi |
---|
| 1007 | fi |
---|
| 1008 | (( i=i+3 )) |
---|
| 1009 | done |
---|
| 1010 | fi |
---|
| 1011 | |
---|
| 1012 | # Save Output Text files of models |
---|
| 1013 | #--------------------------------- |
---|
| 1014 | |
---|
| 1015 | IGCM_card_DefineArrayFromOption ${card} OutputText List |
---|
| 1016 | ListTextName=${compname}_OutputText_List |
---|
| 1017 | |
---|
| 1018 | eval TextName0=\${${ListTextName}[0]} > /dev/null 2>&1 |
---|
| 1019 | if [ X${TextName0} != X${NULL_STR} ] ; then |
---|
| 1020 | eval NbFiles=\${#${ListTextName}[@]} > /dev/null 2>&1 |
---|
| 1021 | |
---|
| 1022 | (( i=0 )) |
---|
| 1023 | until [ $i -eq $NbFiles ]; do |
---|
| 1024 | eval file_in=\${${ListTextName}[$i]} > /dev/null 2>&1 |
---|
| 1025 | (( i=i+1 )) |
---|
| 1026 | |
---|
| 1027 | nb_text_file=$( ls ${file_in}* 2>/dev/null | wc -l ) |
---|
| 1028 | if [ ${nb_text_file} -gt 1 ] ; then |
---|
| 1029 | list_file=$( ls ${file_in}* ) |
---|
| 1030 | for file in ${list_file} |
---|
| 1031 | do |
---|
| 1032 | eval IGCM_sys_Put_Out ${file} \${R_OUT_${comp}_D}/${PREFIX}_${file} |
---|
| 1033 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
---|
| 1034 | done |
---|
| 1035 | else |
---|
| 1036 | if ( [ -f ${file_in}_0000 ] || [ -f ${file_in}0 ] ) ; then |
---|
| 1037 | eval IGCM_sys_Mv ${file_in}* ${file_in} |
---|
| 1038 | fi |
---|
| 1039 | eval IGCM_sys_Put_Out ${file_in} \${R_OUT_${comp}_D}/${PREFIX}_${file_in} |
---|
[52] | 1040 | [ $? -eq 0 ] && eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
[2] | 1041 | fi |
---|
| 1042 | done |
---|
| 1043 | fi |
---|
| 1044 | done |
---|
| 1045 | |
---|
| 1046 | IGCM_debug_PopStack "IGCM_comp_Finalize" |
---|
| 1047 | } |
---|