| [2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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| [373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| [2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #======================================================================== |
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| 15 | function IGCM_comp_Initialize |
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| 16 | { |
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| [544] | 17 | IGCM_debug_PushStack "IGCM_comp_Initialize" |
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| [2] | 18 | |
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| [778] | 19 | # Debug Print : |
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| [544] | 20 | echo |
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| 21 | IGCM_debug_Print 1 "IGCM_comp_Initialize" |
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| 22 | echo |
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| [2] | 23 | |
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| [544] | 24 | typeset comp compname comptagname CompatibilityTag auxprint card_UserChoices first_option option i j |
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| 25 | for comp in ${config_ListOfComponents[*]} ; do |
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| [2] | 26 | |
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| [902] | 27 | # Define component |
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| [544] | 28 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp} |
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| 29 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 30 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| [457] | 31 | |
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| [615] | 32 | # Debug Print |
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| 33 | IGCM_debug_Print 1 "Initialize ${comp} : ${compname} component." |
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| 34 | |
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| [544] | 35 | # Read libIGCM compatibility version in ${compname}.card |
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| 36 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 37 | IGCM_card_DefineVariableFromOption ${card} Compatibility libIGCM |
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| [2] | 38 | |
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| [778] | 39 | eval CompatibilityTag=\${${compname}_Compatibility_libIGCM} > /dev/null 2>&1 |
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| [544] | 40 | if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then |
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| 41 | IGCM_debug_Exit "${compname}.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ." |
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| 42 | fi |
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| [2] | 43 | |
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| [544] | 44 | # Manage component executable |
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| 45 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card Executable ${comp} |
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| [2] | 46 | |
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| [849] | 47 | # Define all options in section [comp] |
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| 48 | IGCM_debug_Print 3 " DefineArrayFromSection : ${comp}" |
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| 49 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ${comp} |
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| 50 | eval config_comp=\${config_${comp}[*]} > /dev/null 2>&1 |
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| 51 | for option in ${config_comp[*]} ; do |
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| [902] | 52 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} ${option} |
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| [849] | 53 | done |
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| 54 | IGCM_debug_Print 3 " Found in section config_${comp} : ${config_comp[*]} " |
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| 55 | |
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| [544] | 56 | # Debug Print : |
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| 57 | eval auxprint=\${config_${comp}_WriteFrequency} |
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| 58 | IGCM_debug_Print 1 "Write frequency for ${compname} : ${auxprint} " |
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| 59 | #2> /dev/null |
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| [2] | 60 | |
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| [544] | 61 | # Debug Print : |
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| 62 | IGCM_debug_Print 2 "Initialize following component library" |
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| [522] | 63 | |
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| [544] | 64 | # Source drivers in directory DRIVER if it exist |
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| 65 | # else source them from directory COMP |
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| 66 | if [ -d ${SUBMIT_DIR}/DRIVER ] ; then |
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| 67 | IGCM_debug_Print 2 ${SUBMIT_DIR}/DRIVER/${compname}.driver |
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| 68 | # Source component library |
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| 69 | . ${SUBMIT_DIR}/DRIVER/${compname}.driver |
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| 70 | else |
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| 71 | IGCM_debug_Print 2 ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 72 | # Source component library |
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| 73 | . ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 74 | fi |
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| 75 | IGCM_debug_Print 3 "With tag : ${comptagname}" |
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| [2] | 76 | |
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| [544] | 77 | # Debug Print |
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| 78 | IGCM_debug_Print 3 "Initialize ${comp} output directory." |
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| [2] | 79 | |
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| [544] | 80 | # Define ARCHIVED Dirs |
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| 81 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 82 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}} |
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| [2] | 83 | |
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| [544] | 84 | eval R_OUT_${comp}_O=\${R_OUT_${comp}}/Output |
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| 85 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_O} |
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| [2] | 86 | |
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| [544] | 87 | eval R_OUT_${comp}_R=\${R_OUT_${comp}}/Restart |
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| [804] | 88 | [ ${config_Post_PackFrequency} = NONE ] && eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_R} |
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| [2] | 89 | |
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| [544] | 90 | eval R_OUT_${comp}_D=\${R_OUT_${comp}}/Debug |
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| [804] | 91 | [ ${config_Post_PackFrequency} = NONE ] && eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_D} |
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| [2] | 92 | |
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| [544] | 93 | eval R_OUT_${comp}_O_I=\${R_OUT_${comp}_O}/INS |
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| 94 | eval R_OUT_${comp}_O_H=\${R_OUT_${comp}_O}/HF |
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| 95 | eval R_OUT_${comp}_O_D=\${R_OUT_${comp}_O}/DA |
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| 96 | eval R_OUT_${comp}_O_M=\${R_OUT_${comp}_O}/MO |
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| 97 | eval R_OUT_${comp}_O_Y=\${R_OUT_${comp}_O}/YE |
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| 98 | |
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| 99 | # Define BUFFERED Dirs |
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| [1022] | 100 | if ( [ ! ${config_Post_PackFrequency} = NONE ] || [ X${config_UserChoices_SpaceName} = XTEST ] ) ; then |
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| [804] | 101 | eval R_BUF_${comp}=${R_BUFR}/${comp} |
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| 102 | eval IGCM_sys_Mkdir \${R_BUF_${comp}} |
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| [544] | 103 | |
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| [804] | 104 | eval R_BUF_${comp}_O=\${R_BUF_${comp}}/Output |
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| 105 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_O} |
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| [544] | 106 | |
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| [804] | 107 | eval R_BUF_${comp}_R=\${R_BUF_${comp}}/Restart |
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| 108 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_R} |
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| [544] | 109 | |
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| [804] | 110 | eval R_BUF_${comp}_D=\${R_BUF_${comp}}/Debug |
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| 111 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_D} |
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| [544] | 112 | |
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| [804] | 113 | eval R_BUF_${comp}_O_I=\${R_BUF_${comp}_O}/INS |
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| 114 | eval R_BUF_${comp}_O_H=\${R_BUF_${comp}_O}/HF |
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| 115 | eval R_BUF_${comp}_O_D=\${R_BUF_${comp}_O}/DA |
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| 116 | eval R_BUF_${comp}_O_M=\${R_BUF_${comp}_O}/MO |
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| 117 | eval R_BUF_${comp}_O_Y=\${R_BUF_${comp}_O}/YE |
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| 118 | fi |
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| [544] | 119 | |
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| 120 | # Read UserChoices section of component card |
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| 121 | IGCM_debug_Print 2 "DefineArrayFromSection : ${compname}_UserChoices ${card}" |
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| 122 | IGCM_card_DefineArrayFromSection ${card} UserChoices |
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| 123 | eval first_option=\${${compname}_UserChoices[0]} > /dev/null 2>&1 |
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| [804] | 124 | |
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| [544] | 125 | # If section is not empty we define corresponding variables |
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| 126 | if [ X${first_option} != X"Error:" ] ; then |
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| 127 | if [ X${card_UserChoices[0]} != X ] ; then |
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| [778] | 128 | unset card_UserChoices |
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| [544] | 129 | fi |
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| [833] | 130 | eval set +A card_UserChoices -- \${${compname}_UserChoices[*]} > /dev/null 2>&1 |
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| [544] | 131 | IGCM_debug_Print 3 "${compname}_UserChoices_values:" |
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| 132 | for option in ${card_UserChoices[*]} ; do |
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| [778] | 133 | IGCM_card_DefineVariableFromOption ${card} UserChoices ${option} |
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| 134 | eval IGCM_debug_Print 3 "${option}=\${${compname}_UserChoices_${option}}" |
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| [544] | 135 | done |
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| 136 | fi |
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| 137 | |
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| 138 | # Read and Build Output File stuff |
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| 139 | IGCM_debug_Print 2 "DefineArrayFromOption : ${compname}_OutputFiles ${card}" |
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| 140 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 141 | ListFilesName=${compname}_OutputFiles_List |
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| 142 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 143 | # |
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| 144 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 145 | # |
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| 146 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 147 | # |
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| 148 | # INITIALISATION |
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| 149 | # |
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| 150 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 151 | # |
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| 152 | i=2 |
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| 153 | # |
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| 154 | until [ $i -ge $NbFiles ]; do |
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| [778] | 155 | # |
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| 156 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 157 | # |
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| 158 | if [ X${flag_post} != XNONE ] ; then |
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| 159 | # |
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| [544] | 160 | # First of all |
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| 161 | # |
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| [778] | 162 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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| [1151] | 163 | # This section is mandatory |
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| 164 | if [ "X$( eval echo \${${compname}_${flag_post}[@]} )" = "X" ] ; then |
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| 165 | IGCM_debug_Print 1 "IGCM_card_DefineArrayFromSection ${card} ${flag_post}" |
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| 166 | IGCM_debug_Exit "${flag_post} section do not exist in ${card}. Please check your card." |
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| 167 | IGCM_debug_Verif_Exit |
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| 168 | fi |
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| [778] | 169 | # |
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| 170 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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| 171 | # |
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| 172 | # variable option allready typeset above |
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| 173 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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| 174 | if [ ${option} = Seasonal ] ; then |
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| 175 | FoundSeasonal=true |
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| 176 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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| 177 | fi |
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| 178 | done |
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| 179 | # |
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| 180 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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| 181 | eval ${compname}_${flag_post}_Seasonal=ON |
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| 182 | fi |
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| 183 | # |
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| 184 | if [ $( eval echo \${${compname}_${flag_post}_Seasonal} ) = ON ] ; then |
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| 185 | Seasonal=true |
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| 186 | fi |
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| 187 | |
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| 188 | # Dimension = vide si vieille card. |
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| 189 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars |
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| 190 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} Patches |
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| 191 | if [ X"$( eval echo \${${compname}_${flag_post}_TimeSeriesVars[*]} )" = X"Option not" ] ; then |
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| 192 | # New TimeSeriesVar description, with 2D, 3D and associate ChunckJob. |
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| 193 | ListDimension[0]=2D |
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| 194 | ListDimension[1]=3D |
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| 195 | TimeSeries=false |
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| 196 | iLoop=${#ListDimension[*]} |
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| 197 | j=0 |
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| 198 | until [ $j -ge ${iLoop} ]; do |
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| 199 | Dimension=${ListDimension[${j}]} |
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| 200 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars${Dimension} |
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| 201 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} ChunckJob${Dimension} |
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| [544] | 202 | # |
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| [778] | 203 | # Time series WITHOUT chunk |
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| 204 | # |
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| 205 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 206 | if [ $( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 207 | IGCM_debug_Print 3 "${Dimension} time series activated for ${flag_post}" |
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| 208 | eval TimeSeries${Dimension}=true |
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| 209 | fi |
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| 210 | fi |
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| 211 | # |
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| 212 | # Time series WITH chunk |
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| 213 | # |
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| 214 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 215 | chunck_size=$( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) |
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| 216 | if [ ! ${chunck_size} = NONE ] && [ ! ${chunck_size} = OFF ] ; then |
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| 217 | IGCM_debug_Print 3 "${Dimension} time series activated with chunck for ${flag_post}" |
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| 218 | eval TimeSeriesChunck${Dimension}=true |
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| [829] | 219 | eval CHUNCK${Dimension}_COMP[\${#CHUNCK${Dimension}_COMP[*]}]=${comp} |
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| 220 | eval CHUNCK${Dimension}_FLAG[\${#CHUNCK${Dimension}_FLAG[*]}]=${i} |
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| 221 | eval CHUNCK${Dimension}_NAME[\${#CHUNCK${Dimension}_NAME[*]}]=${flag_post} |
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| 222 | eval CHUNCK${Dimension}_SIZE[\${#CHUNCK${Dimension}_SIZE[*]}]=${chunck_size} |
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| [778] | 223 | fi |
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| 224 | fi |
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| 225 | (( j=j+1 )) |
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| 226 | done |
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| 227 | else |
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| 228 | ListDimension[0]="" |
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| 229 | TimeSeries=true |
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| 230 | TimeSeries2D=false |
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| 231 | TimeSeries3D=false |
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| 232 | TimeSeriesChunck2D=false |
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| 233 | TimeSeriesChunck3D=false |
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| 234 | fi |
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| 235 | fi |
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| 236 | (( i=i+3 )) |
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| [544] | 237 | done |
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| 238 | fi |
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| 239 | # Debug Print |
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| 240 | IGCM_debug_Print 3 "Initialize ${compname} with driver." |
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| 241 | # INIT component |
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| 242 | ${comp}_Initialize |
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| 243 | echo |
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| 244 | done |
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| [2] | 245 | |
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| [544] | 246 | IGCM_debug_PopStack "IGCM_comp_Initialize" |
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| [2] | 247 | } |
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| 248 | |
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| 249 | #======================================================================= |
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| 250 | function IGCM_comp_PrepareDeletedFiles |
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| 251 | { |
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| [544] | 252 | IGCM_debug_PushStack "IGCM_comp_PrepareDeletedFiles" $@ |
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| [778] | 253 | |
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| [544] | 254 | if [ X${2} != X. ] ; then |
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| 255 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${2} ) > /dev/null 2>&1 |
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| 256 | else |
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| 257 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${1} ) > /dev/null 2>&1 |
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| 258 | fi |
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| [2] | 259 | |
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| [544] | 260 | IGCM_debug_PopStack "IGCM_comp_PrepareDeletedFiles" |
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| [2] | 261 | } |
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| 262 | |
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| 263 | #======================================================================= |
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| 264 | function IGCM_comp_GetInputInitialStateFiles |
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| 265 | { |
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| [544] | 266 | IGCM_debug_PushStack "IGCM_comp_GetInputInitialStateFiles" |
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| [2] | 267 | |
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| [544] | 268 | # Debug Print : |
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| 269 | echo |
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| 270 | IGCM_debug_Print 1 "IGCM_comp_GetInputInitialStateFiles" |
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| 271 | echo |
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| [2] | 272 | |
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| [902] | 273 | # Only the first time step need InitialStateFiles |
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| [544] | 274 | # otherwise it's BoundaryConditions |
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| 275 | if ( ${FirstInitialize} ) ; then |
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| [902] | 276 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 277 | typeset file_in_ file_in file_out_ file_out do_init |
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| [544] | 278 | for comp in ${config_ListOfComponents[*]} ; do |
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| 279 | # Initialize |
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| 280 | do_init="y" |
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| 281 | # Do we need to bring initial state file for this component |
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| 282 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
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| [778] | 283 | eval do_init="n" |
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| [544] | 284 | else |
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| [778] | 285 | # Read component Restarts parameters |
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| 286 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
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| 287 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 288 | if [ "${do_start}" = "y" ] ; then |
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| 289 | do_init="n" |
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| 290 | else |
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| 291 | do_init="y" |
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| 292 | fi |
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| [544] | 293 | fi |
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| [2] | 294 | |
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| [544] | 295 | if [ "${do_init}" = "y" ] ; then |
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| [902] | 296 | # Define component |
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| [778] | 297 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 298 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| [2] | 299 | |
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| [778] | 300 | # Debug Print : |
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| 301 | IGCM_debug_Print 3 "Initialisation files ${compname}" |
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| [2] | 302 | |
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| [778] | 303 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| [2] | 304 | |
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| [778] | 305 | IGCM_card_DefineArrayFromOption ${card} InitialStateFiles List |
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| 306 | ListFilesName=${compname}_InitialStateFiles_List |
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| [2] | 307 | |
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| [778] | 308 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 309 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 310 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 311 | (( i=0 )) |
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| 312 | until [ $i -ge $NbFiles ]; do |
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| 313 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 314 | eval file_in=${file_in_} |
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| 315 | (( i_ = i+1 )) |
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| 316 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 317 | eval file_out=${file_out_} |
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| [2] | 318 | |
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| [778] | 319 | IGCM_sys_IsFileArchived ${file_in} |
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| 320 | if [ $? = 0 ] ; then |
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| 321 | IGCM_sys_Get ${file_in} ${file_out} |
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| 322 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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| 323 | else |
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| 324 | IGCM_sys_Cp ${file_in} ${file_out} |
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| 325 | fi |
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| 326 | (( i=i+2 )) |
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| 327 | done |
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| 328 | fi |
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| [544] | 329 | fi |
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| 330 | done |
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| 331 | fi |
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| 332 | IGCM_debug_PopStack "IGCM_comp_GetInputInitialStateFiles" |
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| [2] | 333 | } |
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| 334 | |
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| 335 | #======================================================================= |
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| [247] | 336 | # Definition of Smooth modulo function |
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| [902] | 337 | # usage : |
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| [247] | 338 | # IGCM_SmoothModulo StringModulo value |
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| 339 | # |
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| 340 | # StringModulo : A string of min max and modulo like definition of Scilab vectors. |
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| 341 | # [min]:[modulo:][max] |
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| 342 | # where : |
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| [902] | 343 | # [] value are optionnals; |
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| [247] | 344 | # empty min equal 1 |
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| 345 | # empty max equal infinity |
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| 346 | # modulo not given or empty equal 1 |
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| 347 | # empty string or just ':' equal always. |
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| 348 | # |
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| 349 | # value : the value to test with the definition |
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| 350 | # |
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| [902] | 351 | # return : true(1)/false(0) |
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| [247] | 352 | function IGCM_SmoothModulo |
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| 353 | { |
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| [544] | 354 | IGCM_debug_PushStack "IGCM_SmoothModulo" |
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| 355 | typeset defVector ModValue |
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| [247] | 356 | |
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| [544] | 357 | eval set +A defVector -- $( echo "${1}" | \ |
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| 358 | gawk -F ':' '{print ($1 == "" ? 1 : $1) " " (NF==3 ? ($2 == "" ? 1 : $2) : 1) " " (NF==3 ? ($3 == "" ? -1 : $3) : ($2 == "" ? -1 : $2))}' ) |
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| [247] | 359 | |
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| [544] | 360 | # Save Smooth Min and Max. Needed to call IGCM_sys_Get when appropriate |
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| 361 | arr[1]=${defVector[0]} |
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| 362 | arr[2]=${defVector[2]} |
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| [412] | 363 | |
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| [902] | 364 | # Test limits : |
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| 365 | # ${defVector[0]} <= ${2} <= ${defVector[2]} |
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| [544] | 366 | # or ${defVector[2]} == -1 |
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| 367 | if ( [ ${2} -ge ${defVector[0]} ] && ( [ ${2} -le ${defVector[2]} ] || [ ${defVector[2]} -lt 0 ] ) ) ; then |
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| 368 | # Test modulo |
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| 369 | ModValue=$( expr \( ${2} - ${defVector[0]} \) % ${defVector[1]} ) |
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| 370 | if [ ${ModValue} -eq 0 ] ; then |
|---|
| 371 | arr[3]=true |
|---|
| 372 | echo ${arr[@]} |
|---|
| 373 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
|---|
| 374 | return 1 |
|---|
| [247] | 375 | else |
|---|
| [544] | 376 | arr[3]=false |
|---|
| 377 | echo ${arr[@]} |
|---|
| 378 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
|---|
| 379 | return 0 |
|---|
| [247] | 380 | fi |
|---|
| [544] | 381 | else |
|---|
| 382 | arr[3]=false |
|---|
| 383 | echo ${arr[@]} |
|---|
| 384 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
|---|
| 385 | return 0 |
|---|
| 386 | fi |
|---|
| [247] | 387 | } |
|---|
| 388 | |
|---|
| 389 | #======================================================================= |
|---|
| 390 | function IGCM_comp_GetInputSmoothFiles |
|---|
| 391 | { |
|---|
| [544] | 392 | IGCM_debug_PushStack "IGCM_comp_GetInputSmoothFiles" |
|---|
| [247] | 393 | |
|---|
| [544] | 394 | # Debug Print : |
|---|
| 395 | echo |
|---|
| 396 | IGCM_debug_Print 1 "IGCM_comp_GetInputSmoothFiles" |
|---|
| 397 | echo |
|---|
| [247] | 398 | |
|---|
| [544] | 399 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles j i i_ i__ |
|---|
| 400 | typeset file_in_ file_in file_out_ file_out ret SmoothDef aux val |
|---|
| [247] | 401 | |
|---|
| [544] | 402 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 403 | # Define component |
|---|
| 404 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
|---|
| 405 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
|---|
| [247] | 406 | |
|---|
| [544] | 407 | # Debug Print : |
|---|
| 408 | IGCM_debug_Print 3 "Smooth files ${compname}" |
|---|
| [247] | 409 | |
|---|
| [544] | 410 | card=${SUBMIT_DIR}/COMP/${compname}.card |
|---|
| [247] | 411 | |
|---|
| [544] | 412 | IGCM_card_DefineArrayFromOption ${card} SmoothFiles List |
|---|
| 413 | ListFilesName=${compname}_SmoothFiles_List |
|---|
| 414 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
|---|
| [247] | 415 | |
|---|
| [544] | 416 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != X"Section" ] ) ; then |
|---|
| 417 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| [247] | 418 | |
|---|
| [544] | 419 | (( i=0 )) |
|---|
| 420 | until [ $i -ge $NbFiles ]; do |
|---|
| [778] | 421 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 422 | eval file_in=${file_in_} |
|---|
| 423 | (( i_ = i+1 )) |
|---|
| 424 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 425 | eval file_out=${file_out_} |
|---|
| [247] | 426 | |
|---|
| [778] | 427 | # define CumulPeriod definition for this file |
|---|
| 428 | (( i__ = i+2 )) |
|---|
| 429 | eval SmoothDef=\${${ListFilesName}[$i__]} |
|---|
| 430 | IGCM_debug_Print 3 " ${file_in} ${SmoothDef}" |
|---|
| 431 | aux=$( IGCM_SmoothModulo ${SmoothDef} ${CumulPeriod} ) |
|---|
| 432 | j=1 |
|---|
| 433 | for val in ${aux} ; do |
|---|
| 434 | [ ${j} -eq 1 ] && SmoothMin=${val} |
|---|
| 435 | [ ${j} -eq 2 ] && SmoothMax=${val} |
|---|
| 436 | [ ${j} -eq 3 ] && ret=${val} |
|---|
| 437 | (( j=j+1 )) |
|---|
| 438 | done |
|---|
| 439 | [ ${SmoothMax} -eq -1 ] && SmoothMax=${CumulPeriod} |
|---|
| 440 | if ( [ X${ret} = Xtrue ] || ( [ ${Period} -eq 1 ] && [ ${CumulPeriod} -ge ${SmoothMin} ] && [ ${CumulPeriod} -le ${SmoothMax} ] ) ) ; then |
|---|
| [548] | 441 | |
|---|
| [778] | 442 | IGCM_sys_IsFileArchived ${file_in} |
|---|
| 443 | if [ $? = 0 ] ; then |
|---|
| 444 | IGCM_sys_Get ${file_in} ${file_out} |
|---|
| 445 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
|---|
| 446 | else |
|---|
| 447 | IGCM_sys_Cp ${file_in} ${file_out} |
|---|
| 448 | fi |
|---|
| 449 | fi |
|---|
| 450 | (( i=i+3 )) |
|---|
| [544] | 451 | done |
|---|
| 452 | fi |
|---|
| 453 | done |
|---|
| [778] | 454 | |
|---|
| [544] | 455 | IGCM_debug_PopStack "IGCM_comp_GetInputSmoothFiles" |
|---|
| [247] | 456 | } |
|---|
| 457 | |
|---|
| 458 | #======================================================================= |
|---|
| [2] | 459 | function IGCM_comp_GetInputBoundaryFiles |
|---|
| 460 | { |
|---|
| [544] | 461 | IGCM_debug_PushStack "IGCM_comp_GetInputBoundaryFiles" |
|---|
| [2] | 462 | |
|---|
| [544] | 463 | # Debug Print : |
|---|
| 464 | echo |
|---|
| 465 | IGCM_debug_Print 1 "IGCM_comp_GetInputBoundaryFiles" |
|---|
| 466 | echo |
|---|
| [2] | 467 | |
|---|
| [902] | 468 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
|---|
| 469 | typeset file_in_ file_in file_out_ file_out |
|---|
| [2] | 470 | |
|---|
| [544] | 471 | if [ ${Period} = 1 ]; then |
|---|
| 472 | ListFixBoundary=" " |
|---|
| 473 | fi |
|---|
| [2] | 474 | |
|---|
| [544] | 475 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| [2] | 476 | |
|---|
| [544] | 477 | # Define component |
|---|
| 478 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
|---|
| 479 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
|---|
| [2] | 480 | |
|---|
| [544] | 481 | # Debug Print : |
|---|
| 482 | IGCM_debug_Print 3 "Boundary files ${compname}" |
|---|
| [2] | 483 | |
|---|
| [544] | 484 | card=${SUBMIT_DIR}/COMP/${compname}.card |
|---|
| [2] | 485 | |
|---|
| [544] | 486 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles List |
|---|
| 487 | ListFilesName=${compname}_BoundaryFiles_List |
|---|
| 488 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
|---|
| [2] | 489 | |
|---|
| [544] | 490 | if [ X${FileName0} != X${NULL_STR} ] ; then |
|---|
| 491 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| [2] | 492 | |
|---|
| [544] | 493 | (( i=0 )) |
|---|
| 494 | until [ $i -ge $NbFiles ]; do |
|---|
| [778] | 495 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 496 | eval file_in=${file_in_} |
|---|
| 497 | (( i_ = i+1 )) |
|---|
| 498 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 499 | eval file_out=${file_out_} |
|---|
| [2] | 500 | |
|---|
| [778] | 501 | IGCM_sys_IsFileArchived ${file_in} |
|---|
| 502 | if [ $? = 0 ] ; then |
|---|
| 503 | IGCM_sys_Get ${file_in} ${file_out} |
|---|
| [809] | 504 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
|---|
| [778] | 505 | else |
|---|
| 506 | IGCM_sys_Cp ${file_in} ${file_out} |
|---|
| 507 | fi |
|---|
| [2] | 508 | |
|---|
| [778] | 509 | (( i=i+2 )) |
|---|
| [544] | 510 | done |
|---|
| 511 | fi |
|---|
| [2] | 512 | |
|---|
| [544] | 513 | # Get non deleted files |
|---|
| 514 | if [ ${Period} = 1 ]; then |
|---|
| [2] | 515 | |
|---|
| [544] | 516 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles ListNonDel |
|---|
| 517 | ListFilesName=${compname}_BoundaryFiles_ListNonDel |
|---|
| 518 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
|---|
| [778] | 519 | |
|---|
| [544] | 520 | if [ X${FileName0} != X${NULL_STR} ] ; then |
|---|
| [778] | 521 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| [2] | 522 | |
|---|
| [778] | 523 | (( i=0 )) |
|---|
| 524 | until [ $i -ge $NbFiles ]; do |
|---|
| 525 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 526 | eval file_in=${file_in_} |
|---|
| 527 | (( i_ = i+1 )) |
|---|
| 528 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 529 | eval file_out=${file_out_} |
|---|
| [2] | 530 | |
|---|
| [778] | 531 | IGCM_sys_IsFileArchived ${file_in} |
|---|
| 532 | if [ $? = 0 ] ; then |
|---|
| 533 | IGCM_sys_Get ${file_in} ${file_out} |
|---|
| 534 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
|---|
| 535 | else |
|---|
| 536 | IGCM_sys_Cp ${file_in} ${file_out} |
|---|
| 537 | fi |
|---|
| [2] | 538 | |
|---|
| [778] | 539 | if [ X${file_out} != X. ] ; then |
|---|
| 540 | ListFixBoundary=${ListFixBoundary}" "${file_out} |
|---|
| 541 | else |
|---|
| 542 | ListFixBoundary=${ListFixBoundary}" "$( basename ${file_in} ) |
|---|
| 543 | fi |
|---|
| 544 | |
|---|
| 545 | (( i=i+2 )) |
|---|
| 546 | done |
|---|
| [544] | 547 | fi |
|---|
| 548 | fi |
|---|
| 549 | done |
|---|
| [778] | 550 | |
|---|
| [544] | 551 | IGCM_debug_PopStack "IGCM_comp_GetInputBoundaryFiles" |
|---|
| [2] | 552 | } |
|---|
| 553 | |
|---|
| 554 | #======================================================================= |
|---|
| 555 | function IGCM_comp_DelFixeBoundaryFiles |
|---|
| 556 | { |
|---|
| [544] | 557 | IGCM_debug_PushStack "IGCM_comp_DelFixeBoundaryFiles" |
|---|
| [2] | 558 | |
|---|
| [544] | 559 | # Debug Print : |
|---|
| 560 | echo |
|---|
| 561 | IGCM_debug_Print 1 "IGCM_comp_DelFixeBoundaryFiles" |
|---|
| 562 | echo |
|---|
| [2] | 563 | |
|---|
| [544] | 564 | ls -l ${ListFixBoundary} |
|---|
| 565 | rm -f ${ListFixBoundary} |
|---|
| [2] | 566 | |
|---|
| [544] | 567 | IGCM_debug_PopStack "IGCM_comp_DelFixeBoundaryFiles" |
|---|
| [2] | 568 | } |
|---|
| 569 | |
|---|
| 570 | #======================================================================= |
|---|
| 571 | function IGCM_comp_GetInputParametersFiles |
|---|
| 572 | { |
|---|
| [544] | 573 | IGCM_debug_PushStack "IGCM_comp_GetInputParametersFiles" |
|---|
| [2] | 574 | |
|---|
| [544] | 575 | # Debug Print : |
|---|
| 576 | echo |
|---|
| 577 | IGCM_debug_Print 1 "IGCM_comp_GetInputParametersFiles" |
|---|
| 578 | echo |
|---|
| [2] | 579 | |
|---|
| [544] | 580 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ file_in file_out |
|---|
| 581 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| [902] | 582 | # Define component |
|---|
| [544] | 583 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
|---|
| 584 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
|---|
| [2] | 585 | |
|---|
| [544] | 586 | # Debug Print : |
|---|
| 587 | IGCM_debug_Print 3 "Parameters ${compname}" |
|---|
| [2] | 588 | |
|---|
| [778] | 589 | card=${SUBMIT_DIR}/COMP/${compname}.card |
|---|
| [2] | 590 | |
|---|
| [544] | 591 | IGCM_card_DefineArrayFromOption ${card} ParametersFiles List |
|---|
| 592 | ListFilesName=${compname}_ParametersFiles_List |
|---|
| 593 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
|---|
| [2] | 594 | |
|---|
| [544] | 595 | if [ X${FileName0} != X${NULL_STR} ] ; then |
|---|
| 596 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| [2] | 597 | |
|---|
| [544] | 598 | (( i=0 )) |
|---|
| 599 | until [ $i -ge $NbFiles ]; do |
|---|
| [778] | 600 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 601 | eval file_in=${file_in_} |
|---|
| 602 | (( i_ = i+1 )) |
|---|
| 603 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| [902] | 604 | eval file_out=${file_out_} |
|---|
| [2] | 605 | |
|---|
| [902] | 606 | IGCM_sys_Cp ${file_in} ${file_out} |
|---|
| [778] | 607 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
|---|
| [2] | 608 | |
|---|
| [778] | 609 | (( i=i+2 )) |
|---|
| [544] | 610 | done |
|---|
| 611 | fi |
|---|
| 612 | done |
|---|
| [2] | 613 | |
|---|
| [544] | 614 | IGCM_debug_PopStack "IGCM_comp_GetInputParametersFiles" |
|---|
| [2] | 615 | } |
|---|
| 616 | |
|---|
| 617 | #======================================================================= |
|---|
| 618 | function IGCM_comp_GetInputRestartFiles |
|---|
| 619 | { |
|---|
| [544] | 620 | IGCM_debug_PushStack "IGCM_comp_GetInputRestartFiles" |
|---|
| [2] | 621 | |
|---|
| [544] | 622 | # Debug Print : |
|---|
| 623 | echo |
|---|
| 624 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles" |
|---|
| 625 | echo |
|---|
| [2] | 626 | |
|---|
| [590] | 627 | typeset Date_tmp Date_r Path_r do_start CompOldName Path_OUT Path_BUF |
|---|
| 628 | typeset Buffered Archived Tared PotentialTarFile IsMatching TarFileFound |
|---|
| [902] | 629 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
|---|
| [544] | 630 | typeset file_in file_out file_in_ file_out_ file_in_Name |
|---|
| 631 | typeset -Z4 j4 |
|---|
| [821] | 632 | #BASH declare j4 |
|---|
| [2] | 633 | |
|---|
| [778] | 634 | IsMatching="" |
|---|
| 635 | |
|---|
| [544] | 636 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| [902] | 637 | # Define component |
|---|
| [544] | 638 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
|---|
| 639 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
|---|
| 640 | # |
|---|
| 641 | card=${SUBMIT_DIR}/COMP/${compname}.card |
|---|
| 642 | # |
|---|
| 643 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
|---|
| 644 | ListFilesName=${compname}_RestartFiles_List |
|---|
| 645 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
|---|
| [2] | 646 | |
|---|
| [544] | 647 | # Debug Print : |
|---|
| 648 | IGCM_debug_Print 3 "restart ${compname}" |
|---|
| [2] | 649 | |
|---|
| [544] | 650 | if ( ${FirstInitialize} ) ; then |
|---|
| [2] | 651 | |
|---|
| [544] | 652 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
|---|
| [778] | 653 | eval config_${comp}_Restart="y" |
|---|
| 654 | eval config_${comp}_RestartDate=${config_Restarts_RestartDate} |
|---|
| 655 | eval config_${comp}_RestartJobName=${config_Restarts_RestartJobName} |
|---|
| 656 | eval config_${comp}_RestartPath=${config_Restarts_RestartPath} |
|---|
| 657 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
|---|
| 658 | eval CompOldName=${comp} |
|---|
| [544] | 659 | else |
|---|
| [778] | 660 | # Read component Restarts parameters |
|---|
| 661 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
|---|
| 662 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
|---|
| [2] | 663 | |
|---|
| [778] | 664 | if [ "${do_start}" = "y" ] ; then |
|---|
| 665 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartDate |
|---|
| 666 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartJobName |
|---|
| 667 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartPath |
|---|
| 668 | else |
|---|
| 669 | eval config_${comp}_RestartDate=-1 |
|---|
| 670 | eval config_${comp}_RestartJobName=${NULL_STR} |
|---|
| 671 | eval config_${comp}_RestartPath=${NULL_STR} |
|---|
| 672 | fi |
|---|
| [849] | 673 | |
|---|
| [778] | 674 | eval CompOldName=\${config_${comp}_OldName} |
|---|
| 675 | if [ X${CompOldName} = X ] ; then |
|---|
| 676 | eval CompOldName=${comp} |
|---|
| 677 | fi |
|---|
| 678 | |
|---|
| 679 | # Reinitialize IsMatching to allow searching for a different tar file for each component. |
|---|
| 680 | IsMatching="" |
|---|
| 681 | TarFileFound="" |
|---|
| [544] | 682 | fi |
|---|
| [2] | 683 | |
|---|
| [544] | 684 | if [ "${do_start}" = "y" ] ; then |
|---|
| [2] | 685 | |
|---|
| [672] | 686 | # Restore Restarts files |
|---|
| 687 | #----------------------- |
|---|
| [778] | 688 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
|---|
| 689 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| [2] | 690 | |
|---|
| [778] | 691 | (( i=1 )) |
|---|
| 692 | until [ $i -gt $NbFiles ]; do |
|---|
| 693 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 694 | eval file_in=${file_in_} |
|---|
| 695 | (( i_ = i+1 )) |
|---|
| 696 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 697 | eval file_out=${file_out_} |
|---|
| 698 | |
|---|
| 699 | eval Date_tmp=\${config_${comp}_RestartDate} |
|---|
| 700 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${Date_tmp} ) |
|---|
| [672] | 701 | # will be re-use |
|---|
| 702 | eval RestartPath=\${config_${comp}_RestartPath} |
|---|
| 703 | eval RestartJobName=\${config_${comp}_RestartJobName} |
|---|
| 704 | # |
|---|
| [778] | 705 | Path_r=${RestartPath}/${RestartJobName}/${CompOldName}/Restart |
|---|
| 706 | file_in_Name=${RestartJobName}_${Date_r}_${file_in} |
|---|
| [2] | 707 | |
|---|
| [778] | 708 | extension_in=$( echo ${file_in_Name##*.} ) |
|---|
| 709 | extension_out=$( echo ${file_out##*.} ) |
|---|
| [672] | 710 | |
|---|
| [778] | 711 | generic_restart_file_name_in=$( basename ${file_in_Name} .${extension_in} ) |
|---|
| 712 | generic_restart_file_name_out=$( basename ${file_out} .${extension_out} ) |
|---|
| [2] | 713 | |
|---|
| [778] | 714 | Path_OUT=${Path_r}/${generic_restart_file_name_in} |
|---|
| 715 | |
|---|
| [672] | 716 | if [ $( IGCM_sys_TestFileBuffer ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
|---|
| [897] | 717 | IGCM_debug_Print 3 "Buffered restart ${Path_OUT}*.${extension_in} " |
|---|
| [778] | 718 | Buffered=true |
|---|
| 719 | Archived=false |
|---|
| 720 | Tared=false |
|---|
| 721 | nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_OUT}_????.${extension_in}) |
|---|
| [672] | 722 | elif [ $( IGCM_sys_TestFileArchive ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
|---|
| [897] | 723 | IGCM_debug_Print 3 "Archived restart ${Path_OUT}*.${extension_in}" |
|---|
| [778] | 724 | Buffered=false |
|---|
| 725 | Archived=true |
|---|
| 726 | Tared=false |
|---|
| 727 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.${extension_in}) |
|---|
| [672] | 728 | else |
|---|
| [897] | 729 | IGCM_debug_Print 3 "No restart file in the buffer nor in the archive directory" |
|---|
| 730 | IGCM_debug_Print 3 "${Path_OUT}*.${extension_in} do not exist" |
|---|
| [902] | 731 | IGCM_debug_Print 3 "Restart files will now be searched for in : ${RestartPath}/${RestartJobName}/RESTART" |
|---|
| [778] | 732 | Buffered=false |
|---|
| 733 | Archived=false |
|---|
| 734 | Tared=true |
|---|
| [672] | 735 | # Look after the tar file we want if we did not found it already |
|---|
| [778] | 736 | if [ X${IsMatching} = X ] ; then |
|---|
| [947] | 737 | IGCM_sys_TestDirArchive ${RestartPath}/${RestartJobName}/RESTART |
|---|
| 738 | if [ $? ] ; then |
|---|
| [897] | 739 | for PotentialTarFile in $( IGCM_sys_RshArchive "find ${RestartPath}/${RestartJobName}/RESTART -name "${RestartJobName}_*restart*.tar" -print" ) ; do |
|---|
| 740 | IsMatching=$( echo ${PotentialTarFile##*/} | \ |
|---|
| 741 | sed "s:_restart::" | \ |
|---|
| 742 | sed "s:^${RestartJobName}_::" | \ |
|---|
| 743 | sed "s:\.tar$::" | \ |
|---|
| 744 | gawk -F_ -v restartdate=${Date_r} \ |
|---|
| 745 | '{if (($1 <= restartdate) && ($2 >= restartdate)) {print $1"_"$2}}' ) |
|---|
| 746 | if [ ! X${IsMatching} = X ] ; then |
|---|
| 747 | TarFileFound=${PotentialTarFile} |
|---|
| 748 | break |
|---|
| 749 | fi |
|---|
| 750 | done |
|---|
| [1017] | 751 | fi |
|---|
| 752 | # Stop here if nothing has been found |
|---|
| 753 | if [ X${TarFileFound} = X ] ; then |
|---|
| [902] | 754 | IGCM_debug_Print 3 "Restart files were not found!" |
|---|
| 755 | IGCM_debug_Print 3 "Restart files have been searched for in buffer and archive directory." |
|---|
| 756 | IGCM_debug_Print 3 "They have been searched for in packed and unpacked format." |
|---|
| [897] | 757 | IGCM_debug_Exit "Please double check restart settings in config.card" |
|---|
| 758 | IGCM_debug_Verif_Exit |
|---|
| 759 | fi |
|---|
| [778] | 760 | fi |
|---|
| [918] | 761 | IGCM_sys_PrepareTaredRestart ${TarFileFound} |
|---|
| 762 | TarFileLocation=$( basename ${TarFileFound} ) |
|---|
| [801] | 763 | IGCM_debug_Print 1 "tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in}" |
|---|
| 764 | tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in} |
|---|
| [778] | 765 | nb_restart_file=$( IGCM_sys_CountFileBuffer ${comp}_${generic_restart_file_name_in}_????.${extension_in} ) |
|---|
| 766 | fi |
|---|
| [672] | 767 | |
|---|
| 768 | if [ ${nb_restart_file} -gt 1 ] ; then |
|---|
| [821] | 769 | j=0 # BASH LINE NOT NEEDED |
|---|
| 770 | # BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do |
|---|
| 771 | until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED |
|---|
| 772 | j4=${j} # BASH LINE NOT NEEDED |
|---|
| [778] | 773 | if [ X${Buffered} = Xtrue ] ; then |
|---|
| 774 | IGCM_sys_GetBuffer ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
|---|
| 775 | elif [ X${Archived} = Xtrue ] ; then |
|---|
| 776 | IGCM_sys_Get ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
|---|
| 777 | elif [ X${Tared} = Xtrue ] ; then |
|---|
| 778 | IGCM_sys_Mv ${comp}_${generic_restart_file_name_in}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
|---|
| 779 | fi |
|---|
| [821] | 780 | (( j=j+1 )) #BASH LINE NOT NEEDED |
|---|
| [778] | 781 | done |
|---|
| [740] | 782 | |
|---|
| 783 | if [ X${NUM_PROC_OCE} != X ] ; then |
|---|
| 784 | if [ ${NUM_PROC_OCE} -ne ${nb_restart_file} ] ; then |
|---|
| 785 | IGCM_sys_rebuild ${generic_restart_file_name_out}.${extension_out} ${generic_restart_file_name_out}_????.${extension_out} |
|---|
| 786 | IGCM_sys_Rm ${generic_restart_file_name_out}_????.${extension_out} |
|---|
| 787 | fi |
|---|
| 788 | fi |
|---|
| [778] | 789 | else |
|---|
| 790 | if [ X${Buffered} = Xtrue ] ; then |
|---|
| 791 | IGCM_sys_GetBuffer ${Path_r}/${file_in_Name} ${file_out} |
|---|
| 792 | elif [ X${Archived} = Xtrue ] ; then |
|---|
| 793 | IGCM_sys_Get ${Path_r}/${file_in_Name} ${file_out} |
|---|
| 794 | elif [ X${Tared} = Xtrue ] ; then |
|---|
| 795 | IGCM_sys_Mv ${comp}_${file_in_Name} ${file_out} |
|---|
| 796 | fi |
|---|
| 797 | fi |
|---|
| 798 | (( i=i+3 )) |
|---|
| 799 | done |
|---|
| 800 | else |
|---|
| 801 | if [ X${FileName0} != XNONE ] ; then |
|---|
| 802 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
|---|
| 803 | else |
|---|
| 804 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
|---|
| 805 | fi |
|---|
| 806 | fi |
|---|
| [544] | 807 | fi |
|---|
| [893] | 808 | elif ( [ ${Period} -eq 1 ] && [ ${DRYRUN} -eq 0 ] ) ; then |
|---|
| [544] | 809 | # if not FirstInitialize and first loop of this job |
|---|
| [2] | 810 | |
|---|
| [544] | 811 | # Restore Restarts files |
|---|
| 812 | #----------------------- |
|---|
| 813 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
|---|
| [778] | 814 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| [2] | 815 | |
|---|
| [778] | 816 | (( i=1 )) |
|---|
| 817 | until [ $i -gt $NbFiles ]; do |
|---|
| 818 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 819 | eval file_in=${file_in_} |
|---|
| 820 | (( i_ = i+1 )) |
|---|
| 821 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 822 | eval file_out=${file_out_} |
|---|
| [2] | 823 | |
|---|
| [1028] | 824 | file_in_Name=${config_UserChoices_JobName}_${LastPeriodDateEnd}_${file_in} |
|---|
| [662] | 825 | |
|---|
| [778] | 826 | extension_in=$( echo ${file_in_Name##*.} ) |
|---|
| 827 | extension_out=$( echo ${file_out##*.} ) |
|---|
| [67] | 828 | |
|---|
| [778] | 829 | generic_restart_file_name_in=$( basename ${file_in_Name} .${extension_in} ) |
|---|
| 830 | generic_restart_file_name_out=$( basename ${file_out} .${extension_out} ) |
|---|
| 831 | |
|---|
| 832 | eval Path_BUF=\${R_BUF_${comp}_R}/${generic_restart_file_name_in} |
|---|
| 833 | eval Path_OUT=\${R_OUT_${comp}_R}/${generic_restart_file_name_in} |
|---|
| 834 | |
|---|
| [662] | 835 | if [ $( IGCM_sys_TestFileBuffer ${Path_BUF}*.${extension_in} ; echo $? ) = 0 ] ; then |
|---|
| [897] | 836 | IGCM_debug_Print 3 "Buffered restart ${Path_BUF}*.${extension_in}" |
|---|
| [778] | 837 | Buffered=true |
|---|
| 838 | Archived=false |
|---|
| 839 | Tared=false |
|---|
| 840 | nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_BUF}_????.${extension_in}) |
|---|
| [672] | 841 | elif [ $( IGCM_sys_TestFileArchive ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
|---|
| [897] | 842 | IGCM_debug_Print 3 "Archived restart ${Path_OUT}*.${extension_in}" |
|---|
| [778] | 843 | Buffered=false |
|---|
| 844 | Archived=true |
|---|
| 845 | Tared=false |
|---|
| 846 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.${extension_in}) |
|---|
| 847 | else |
|---|
| [897] | 848 | IGCM_debug_Print 3 "No restart file in the buffer nor in the archive directory" |
|---|
| [902] | 849 | IGCM_debug_Print 3 "Restart files will now be searched for in : ${R_SAVE}/RESTART" |
|---|
| [778] | 850 | Buffered=false |
|---|
| 851 | Archived=false |
|---|
| 852 | Tared=true |
|---|
| 853 | # Look after the tar file we want if we did not found it already |
|---|
| 854 | if [ X${IsMatching} = X ] ; then |
|---|
| [801] | 855 | for PotentialTarFile in $( IGCM_sys_RshArchive "find ${R_SAVE}/RESTART -name "${config_UserChoices_JobName}_*_restart.tar" -print" ) ; do |
|---|
| [778] | 856 | IsMatching=$( echo ${PotentialTarFile##*/} | sed "s:^${config_UserChoices_JobName}_::" | sed "s:\.restart\.tar$::" | gawk -F_ -v restartdate=${LastPeriodDateEnd} '{if (($1 < restartdate) && ($2 >= restartdate)) {print $1"_"$2}}' ) |
|---|
| 857 | if [ ! X${IsMatching} = X ] ; then |
|---|
| 858 | TarFileFound=${PotentialTarFile} |
|---|
| 859 | break |
|---|
| 860 | fi |
|---|
| 861 | done |
|---|
| 862 | fi |
|---|
| [1017] | 863 | # Stop here if nothing has been found |
|---|
| 864 | if [ X${TarFileFound} = X ] ; then |
|---|
| 865 | IGCM_debug_Print 3 "Restart files were not found!" |
|---|
| 866 | IGCM_debug_Print 3 "Restart files have been searched for in buffer and archive directory." |
|---|
| 867 | IGCM_debug_Print 3 "They have been searched for in packed and unpacked format." |
|---|
| 868 | IGCM_debug_Exit "Please double check restart settings in config.card" |
|---|
| 869 | IGCM_debug_Verif_Exit |
|---|
| 870 | fi |
|---|
| [918] | 871 | IGCM_sys_PrepareTaredRestart ${TarFileFound} |
|---|
| 872 | TarFileLocation=$( basename ${TarFileFound} ) |
|---|
| [801] | 873 | IGCM_debug_Print 1 "tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in}" |
|---|
| 874 | tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in} |
|---|
| [778] | 875 | nb_restart_file=$( IGCM_sys_CountFileBuffer ${comp}_${generic_restart_file_name_in}_????.${extension_in} ) |
|---|
| 876 | fi |
|---|
| [41] | 877 | |
|---|
| [778] | 878 | if [ ${nb_restart_file} -gt 1 ] ; then |
|---|
| [821] | 879 | j=0 # BASH LINE NOT NEEDED |
|---|
| 880 | #BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do |
|---|
| 881 | until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED |
|---|
| 882 | j4=${j} # BASH LINE NOT NEEDED |
|---|
| [778] | 883 | if [ X${Buffered} = Xtrue ] ; then |
|---|
| 884 | IGCM_sys_GetBuffer ${Path_BUF}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
|---|
| 885 | elif [ X${Archived} = Xtrue ] ; then |
|---|
| 886 | IGCM_sys_Get ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
|---|
| 887 | elif [ X${Tared} = Xtrue ] ; then |
|---|
| 888 | IGCM_sys_Mv ${comp}_${generic_restart_file_name_in}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
|---|
| 889 | fi |
|---|
| [821] | 890 | (( j=j+1 )) # BASH LINE NOT NEEDED |
|---|
| [778] | 891 | done |
|---|
| 892 | else |
|---|
| 893 | if [ X${Buffered} = Xtrue ] ; then |
|---|
| 894 | eval IGCM_sys_GetBuffer \${R_BUF_${comp}_R}/${file_in_Name} ${file_out} |
|---|
| 895 | elif [ X${Archived} = Xtrue ] ; then |
|---|
| 896 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${file_in_Name} ${file_out} |
|---|
| 897 | elif [ X${Tared} = Xtrue ] ; then |
|---|
| 898 | IGCM_sys_Mv ${comp}_${file_in_Name} ${file_out} |
|---|
| 899 | fi |
|---|
| 900 | fi |
|---|
| 901 | (( i=i+3 )) |
|---|
| 902 | done |
|---|
| [544] | 903 | else |
|---|
| [778] | 904 | if [ X${FileName0} != XNONE ] ; then |
|---|
| 905 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
|---|
| 906 | else |
|---|
| 907 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
|---|
| 908 | fi |
|---|
| [544] | 909 | fi |
|---|
| [420] | 910 | fi |
|---|
| [544] | 911 | done |
|---|
| [420] | 912 | |
|---|
| [544] | 913 | NbFiles=$( ls * 2> /dev/null | wc -l ) |
|---|
| 914 | if [ ${NbFiles} -gt 0 ] ; then |
|---|
| 915 | IGCM_sys_Chmod u+rw * |
|---|
| 916 | fi |
|---|
| 917 | |
|---|
| 918 | IGCM_debug_PopStack "IGCM_comp_GetInputRestartFiles" |
|---|
| [2] | 919 | } |
|---|
| 920 | |
|---|
| 921 | #======================================================================= |
|---|
| [269] | 922 | function IGCM_comp_PeriodStart |
|---|
| 923 | { |
|---|
| [544] | 924 | IGCM_debug_PushStack "IGCM_comp_PeriodStart" |
|---|
| [269] | 925 | |
|---|
| [544] | 926 | # Debug Print : |
|---|
| 927 | echo |
|---|
| 928 | IGCM_debug_Print 1 "IGCM_comp_PeriodStart" |
|---|
| 929 | echo |
|---|
| [269] | 930 | |
|---|
| [902] | 931 | typeset ExeNameIn ExeNameOut |
|---|
| [544] | 932 | typeset comp compname comptagname |
|---|
| 933 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| [902] | 934 | # Define component |
|---|
| [544] | 935 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
|---|
| 936 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
|---|
| [269] | 937 | |
|---|
| [544] | 938 | # Copy executable for this component |
|---|
| 939 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
|---|
| 940 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
|---|
| [269] | 941 | |
|---|
| [544] | 942 | # Debug Print |
|---|
| 943 | IGCM_debug_Print 3 "PeriodStart ${compname} Driver Function (if any)." |
|---|
| 944 | # UPDATE component |
|---|
| 945 | ${comp}_PeriodStart 2> /dev/null |
|---|
| [269] | 946 | |
|---|
| [544] | 947 | done |
|---|
| [269] | 948 | |
|---|
| [544] | 949 | IGCM_debug_PopStack "IGCM_comp_PeriodStart" |
|---|
| [269] | 950 | } |
|---|
| 951 | |
|---|
| [1166] | 952 | |
|---|
| 953 | |
|---|
| [269] | 954 | #======================================================================= |
|---|
| [1166] | 955 | function IGCM_comp_modifyFile |
|---|
| 956 | { |
|---|
| 957 | # |
|---|
| 958 | # syntax: IGCM_comp_modifyFile filein key [value] |
|---|
| 959 | # |
|---|
| 960 | # For example : IGCM_comp_modifyFile metrics_template.py case_id \'SE_${YEARS}\' |
|---|
| 961 | # |
|---|
| 962 | # This function is used to replace a pattern in a file for a specific variable. |
|---|
| 963 | # |
|---|
| 964 | # Arguments: |
|---|
| 965 | # - filein : the file in run directory in which the variable should be set |
|---|
| 966 | # - key : the variable to modify |
|---|
| 967 | # - value : the value to set the key equal to |
|---|
| 968 | # |
|---|
| 969 | IGCM_debug_PushStack "IGCM_comp_modifyFile" |
|---|
| 970 | |
|---|
| 971 | typeset filein key value pattern |
|---|
| 972 | |
|---|
| 973 | # Set local variables and test the arguments |
|---|
| 974 | if [ $# = 3 ] ; then |
|---|
| 975 | # Normal case with 3 arguments |
|---|
| 976 | filein=$1 ; key=$2 ; value=$3 |
|---|
| 977 | else |
|---|
| 978 | IGCM_debug_Exit "IGCM_comp_modifyFile: Bad number of arguments." |
|---|
| 979 | IGCM_debug_PopStack "IGCM_comp_modifyFile" |
|---|
| 980 | return |
|---|
| 981 | fi |
|---|
| 982 | IGCM_debug_Print 1 "Entering IGCM_comp_modifyFile with arguments: ${filein} ${key} ${value}" |
|---|
| 983 | |
|---|
| 984 | # Test if the file exist |
|---|
| 985 | if [ ! -f ${filein} ] ; then |
|---|
| 986 | IGCM_debug_Exit "IGCM_comp_modifyFile: ${filein} does not exist." |
|---|
| 987 | IGCM_debug_PopStack "IGCM_comp_modifyFile" |
|---|
| 988 | return |
|---|
| 989 | fi |
|---|
| 990 | |
|---|
| 991 | # Read the line with key in the file without the comments |
|---|
| 992 | pattern=$( grep "^ *${key} *=" ${filein} | sed -e "s% *\!.*%%" ) |
|---|
| 993 | |
|---|
| 994 | # Verify the existance of the pattern |
|---|
| 995 | if [ X"${pattern}" = X ] ; then |
|---|
| 996 | # Variable key is not set in filein, stop. |
|---|
| 997 | IGCM_debug_Exit "IGCM_comp_modifyFile : Variable ${key} is not set in correct file. It should be set in ${filein}." |
|---|
| 998 | IGCM_debug_PopStack "IGCM_comp_modifyFile" |
|---|
| 999 | return |
|---|
| 1000 | fi |
|---|
| 1001 | |
|---|
| 1002 | # Now change key in filein |
|---|
| [1176] | 1003 | #sed -e "s:${pattern}:${key}=${value}:" ${filein} > ${filein}.tmp |
|---|
| 1004 | sed -e "s:^ *${key} *=.*:${key}=${value}:" ${filein} > ${filein}.tmp |
|---|
| [1166] | 1005 | IGCM_debug_Print 1 "IGCM_comp_modifyFile: In ${filein} set ${key}=${value}" |
|---|
| 1006 | \mv ${filein}.tmp ${filein} |
|---|
| 1007 | |
|---|
| 1008 | IGCM_debug_PopStack "IGCM_comp_modifyFile" |
|---|
| 1009 | } |
|---|
| 1010 | |
|---|
| 1011 | #======================================================================= |
|---|
| [1069] | 1012 | function IGCM_comp_modifyDefFile |
|---|
| 1013 | { |
|---|
| 1014 | # |
|---|
| 1015 | # syntax: IGCM_comp_modifyDefFile type filein key [value] |
|---|
| 1016 | # |
|---|
| 1017 | # For example : IGCM_comp_modifyDefFile blocker run.def day_step 1200 |
|---|
| 1018 | # |
|---|
| 1019 | # This function is used to modify a parameter file for a specific variable. |
|---|
| [1075] | 1020 | # The file must be a ".def" file, i.e. with IOIPSL parameter file syntax. |
|---|
| 1021 | # This function can be used in the comp.driver files for the components. |
|---|
| [1069] | 1022 | # |
|---|
| [1075] | 1023 | # Arguments: |
|---|
| [1081] | 1024 | # - type : first argument must be blocker, nonblocker or force |
|---|
| [1075] | 1025 | # For "blocker" case, the variable must be attributed the keyworld AUTO |
|---|
| [1069] | 1026 | # otherwise this function will exit. |
|---|
| [1075] | 1027 | # For "nonblocker" case, the user can remove or modify the variable. For |
|---|
| 1028 | # this case, as long as AUTO is not set, no modification will be done. |
|---|
| [1081] | 1029 | # For "force" case, the variable will be modified even if it is not set to AUTO |
|---|
| [1069] | 1030 | # - filein : the file in run directory of .def type in which the variable should be set |
|---|
| 1031 | # - key : the variable to modify |
|---|
| [1075] | 1032 | # - value : the value to set the key equal to, optional. If value is not set or if |
|---|
| [1069] | 1033 | # value=DEFAULT, then a default value must be given in filein using syntax : |
|---|
| 1034 | # key= AUTO : DEFAULT=def_value |
|---|
| 1035 | # |
|---|
| [1075] | 1036 | IGCM_debug_PushStack "IGCM_comp_modifyDefFile" |
|---|
| [1069] | 1037 | |
|---|
| [1166] | 1038 | typeset type filein key value |
|---|
| 1039 | typeset filelist nb_occ modify |
|---|
| 1040 | |
|---|
| [1075] | 1041 | # Set local variables and test the arguments |
|---|
| 1042 | if [ $# = 4 ] ; then |
|---|
| 1043 | # Normal case with 4 arguments |
|---|
| 1044 | type=$1 ; filein=$2 ; key=$3 ; value=$4 |
|---|
| 1045 | elif [ $# = 3 ] ; then |
|---|
| 1046 | # Normal case with 3 arguments |
|---|
| 1047 | type=$1 ; filein=$2 ; key=$3; value="DEFAULT" |
|---|
| 1048 | else |
|---|
| 1049 | IGCM_debug_Exit "IGCM_comp_modifyDefFile: Bad number of arguments." |
|---|
| [1079] | 1050 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
|---|
| [1075] | 1051 | return |
|---|
| 1052 | fi |
|---|
| [1166] | 1053 | IGCM_debug_Print 1 "Entering IGCM_comp_modifyDefFile with arguments: ${type} ${filein} ${key} ${value}" |
|---|
| [1069] | 1054 | |
|---|
| [1075] | 1055 | # Test if first argument is correct |
|---|
| [1166] | 1056 | if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then |
|---|
| [1081] | 1057 | IGCM_debug_Exit "IGCM_comp_modifyDefFile: Error in first argument must be blocker, nonblocker or force" |
|---|
| [1079] | 1058 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
|---|
| [1075] | 1059 | return |
|---|
| 1060 | fi |
|---|
| [1069] | 1061 | |
|---|
| [1075] | 1062 | # Test if the file exist |
|---|
| 1063 | if [ ! -f ${filein} ] ; then |
|---|
| [1166] | 1064 | IGCM_debug_Exit "IGCM_comp_modifyDefFile: ${filein} does not exist." |
|---|
| [1079] | 1065 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
|---|
| [1075] | 1066 | return |
|---|
| 1067 | fi |
|---|
| [1069] | 1068 | |
|---|
| [1102] | 1069 | # Define list of files to test using all files with suffix .def (except used*.def) |
|---|
| 1070 | filelist=$( ls *def | grep -v used ) |
|---|
| [1069] | 1071 | |
|---|
| [1075] | 1072 | # Count number of occurances for the key in all files |
|---|
| [1166] | 1073 | nb_occ=$( grep -w ${key} ${filelist} | grep -v "#" | wc -l ) |
|---|
| [1069] | 1074 | |
|---|
| [1075] | 1075 | # Test if key is set several times |
|---|
| [1166] | 1076 | if [ ${nb_occ} -gt 1 ] ; then |
|---|
| 1077 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : Error in ${filein}: Variable=${key} is set ${nb_occ} times" |
|---|
| [1079] | 1078 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
|---|
| [1075] | 1079 | return |
|---|
| 1080 | fi |
|---|
| 1081 | |
|---|
| 1082 | # Treatement according to different cases |
|---|
| [1166] | 1083 | if [ ${nb_occ} -eq 0 ] && [ ${type} = blocker ] ; then |
|---|
| [1075] | 1084 | # Stop if the key is never set and the function is blocker |
|---|
| [1166] | 1085 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : Error in ${filein}: Variable=${key} has been removed but this function is blocker. " |
|---|
| 1086 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: restore ${filein} for variable ${key}." |
|---|
| 1087 | elif [ ${nb_occ} -eq 0 ] && [ ${type} = nonblocker ] ; then |
|---|
| [1075] | 1088 | # The key is not set but it is a nonblocker call so nothing is done. |
|---|
| [1166] | 1089 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key} is not set in ${filein}. This is a nonblocker call so nothing is done." |
|---|
| 1090 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: Default value for ${key} from the model will be used." |
|---|
| [1081] | 1091 | modify=no |
|---|
| [1166] | 1092 | elif [ $( grep ${key} ${filein} | grep -v "\#" |wc -l ) = 0 ] ; then |
|---|
| [1075] | 1093 | # Variable key is not set in filein, stop. |
|---|
| [1166] | 1094 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : Variable ${key} is not set in correct file. It should be set in ${filein}." |
|---|
| [1081] | 1095 | fi |
|---|
| 1096 | |
|---|
| 1097 | # Check if AUTO is set in the filein on the same line as the key variable |
|---|
| [1166] | 1098 | if [ $( grep -w ${key} ${filein} | grep -v "\#" | grep AUTO | wc -l ) = 1 ] ; then |
|---|
| [1156] | 1099 | # Modification will be done for all cases |
|---|
| 1100 | modify=yes |
|---|
| 1101 | else |
|---|
| 1102 | # The variable was not set to AUTO |
|---|
| [1166] | 1103 | if [ ${type} = blocker ] ; then |
|---|
| [1156] | 1104 | # Exit because this is a blocker call |
|---|
| [1166] | 1105 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : The variable ${key} cannot be modified. It should be set to AUTO." |
|---|
| [1156] | 1106 | return |
|---|
| [1166] | 1107 | elif [ ${type} = nonblocker ] ; then |
|---|
| [1156] | 1108 | # Do nothing. Suppose that the user did set the variable correct |
|---|
| [1166] | 1109 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key} is set by the user. Nothing done." |
|---|
| [1156] | 1110 | modify=no |
|---|
| [1166] | 1111 | elif [ ${type} = force ] ; then |
|---|
| [1156] | 1112 | # Force modification |
|---|
| [1166] | 1113 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile : Variabl=${key} was not set to AUTO. Modification will be forced." |
|---|
| [1081] | 1114 | modify=yes |
|---|
| [1156] | 1115 | fi |
|---|
| [1081] | 1116 | fi |
|---|
| [1069] | 1117 | |
|---|
| [1081] | 1118 | # Do the modifcation now |
|---|
| [1166] | 1119 | if [ ${modify} = yes ] ; then |
|---|
| [1081] | 1120 | |
|---|
| [1156] | 1121 | # For option DEFAULT, read default value from file. |
|---|
| [1166] | 1122 | if [ X"${value}" = XDEFAULT ] || [ X"${value}" = X ] ; then |
|---|
| [1156] | 1123 | # Case to set DEFAULT value |
|---|
| 1124 | # Read default value from filein |
|---|
| [1166] | 1125 | value=$( grep ${key} ${filein} | grep -v "\#" | awk -F"DEFAULT *=" '{print $2}') |
|---|
| [1069] | 1126 | |
|---|
| [1166] | 1127 | if [ X"${value}" = X ] ; then |
|---|
| 1128 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : The variable ${key} needs a DEFAULT value in ${filein}." |
|---|
| 1129 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: The syntax in ${filein} should be:" |
|---|
| 1130 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key}=_AUTO_:DEFAULT=def_value" |
|---|
| [1156] | 1131 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
|---|
| 1132 | return |
|---|
| [1075] | 1133 | fi |
|---|
| [1156] | 1134 | fi |
|---|
| [1069] | 1135 | |
|---|
| [1156] | 1136 | # Now change key in filein |
|---|
| [1166] | 1137 | sed -e "s/^${key}\ *=.*/${key}= ${value}/" ${filein} > ${filein}.tmp |
|---|
| 1138 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: In ${filein} set ${key}=${value}" |
|---|
| 1139 | \mv ${filein}.tmp ${filein} |
|---|
| [1075] | 1140 | fi |
|---|
| [1079] | 1141 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
|---|
| [1069] | 1142 | } |
|---|
| 1143 | |
|---|
| 1144 | #======================================================================= |
|---|
| [1085] | 1145 | function IGCM_comp_modifyNamelist |
|---|
| 1146 | { |
|---|
| 1147 | # |
|---|
| 1148 | # syntax: IGCM_comp_modifyNamelist type filein key [value] |
|---|
| 1149 | # |
|---|
| 1150 | # For example : IGCM_comp_modifyNamelist blocker run.def day_step 1200 |
|---|
| 1151 | # |
|---|
| 1152 | # This function is used to modify a parameter file for a specific variable. |
|---|
| [1155] | 1153 | # The file must be a "namelist" file, i.e. with fortran namelist syntax. |
|---|
| [1085] | 1154 | # This function can be used in the comp.driver files for the components. |
|---|
| 1155 | # |
|---|
| 1156 | # Arguments: |
|---|
| 1157 | # - type : first argument must be blocker, nonblocker or force |
|---|
| 1158 | # For "blocker" case, the variable must be attributed the keyworld AUTO |
|---|
| 1159 | # otherwise this function will exit. |
|---|
| 1160 | # For "nonblocker" case, the user can remove or modify the variable. For |
|---|
| 1161 | # this case, as long as AUTO is not set, no modification will be done. |
|---|
| 1162 | # For "force" case, the variable will be modified even if it is not set to AUTO |
|---|
| 1163 | # - filein : the file in run directory of .def type in which the variable should be set |
|---|
| 1164 | # - key : the variable to modify |
|---|
| 1165 | # - value : the value to set the key equal to, optional. If value is not set or if |
|---|
| 1166 | # value=DEFAULT, then a default value must be given in filein using syntax : |
|---|
| 1167 | # key= AUTO : DEFAULT=def_value |
|---|
| 1168 | # |
|---|
| 1169 | IGCM_debug_PushStack "IGCM_comp_modifyNamelist" |
|---|
| 1170 | |
|---|
| [1166] | 1171 | typeset type filein key value pattern modify |
|---|
| 1172 | |
|---|
| [1085] | 1173 | # Set local variables and test the arguments |
|---|
| 1174 | if [ $# = 4 ] ; then |
|---|
| 1175 | # Normal case with 4 arguments |
|---|
| 1176 | type=$1 ; filein=$2 ; key=$3 ; value=$4 |
|---|
| 1177 | elif [ $# = 3 ] ; then |
|---|
| 1178 | # Normal case with 3 arguments |
|---|
| 1179 | type=$1 ; filein=$2 ; key=$3; value="DEFAULT" |
|---|
| 1180 | else |
|---|
| 1181 | IGCM_debug_Exit "IGCM_comp_modifyNamelist: Bad number of arguments." |
|---|
| 1182 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
|---|
| 1183 | return |
|---|
| 1184 | fi |
|---|
| [1166] | 1185 | IGCM_debug_Print 1 "Entering IGCM_comp_modifyNamelist with arguments: ${type} ${filein} ${key} ${value}" |
|---|
| [1085] | 1186 | |
|---|
| 1187 | # Test if first argument is correct |
|---|
| [1166] | 1188 | if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then |
|---|
| [1085] | 1189 | IGCM_debug_Exit "IGCM_comp_modifyNamelist: Error in first argument must be blocker, nonblocker or force" |
|---|
| 1190 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
|---|
| 1191 | return |
|---|
| 1192 | fi |
|---|
| 1193 | |
|---|
| 1194 | # Test if the file exist |
|---|
| 1195 | if [ ! -f ${filein} ] ; then |
|---|
| [1166] | 1196 | IGCM_debug_Exit "IGCM_comp_modifyNamelist: ${filein} does not exist." |
|---|
| [1085] | 1197 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
|---|
| 1198 | return |
|---|
| 1199 | fi |
|---|
| 1200 | |
|---|
| 1201 | # Read the line with key in the file without the comments |
|---|
| [1166] | 1202 | pattern=$( grep "^ *${key} *=" ${filein} | sed -e "s% *\!.*%%" ) |
|---|
| [1155] | 1203 | |
|---|
| [1085] | 1204 | # Verify the existance of the pattern |
|---|
| 1205 | if [ X"$pattern" = X ] ; then |
|---|
| [1156] | 1206 | # Variable key is not set in filein, stop. |
|---|
| [1166] | 1207 | IGCM_debug_Exit "IGCM_comp_modifyNamelist : Variable ${key} is not set in correct file. It should be set in ${filein}." |
|---|
| [1156] | 1208 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
|---|
| 1209 | return |
|---|
| [1085] | 1210 | fi |
|---|
| [1155] | 1211 | |
|---|
| [1085] | 1212 | # Check if the variable is set to AUTO in the filein |
|---|
| 1213 | if [ $( echo $pattern | grep AUTO | wc -l ) = 1 ] ; then |
|---|
| [1156] | 1214 | # Modification will be done for all cases |
|---|
| 1215 | modify=yes |
|---|
| 1216 | else |
|---|
| 1217 | # The variable was not set to AUTO |
|---|
| [1166] | 1218 | if [ ${type} = blocker ] ; then |
|---|
| [1156] | 1219 | # Exit because this is a blocker call |
|---|
| [1166] | 1220 | IGCM_debug_Exit "IGCM_comp_modifyNamelist : The variable ${key} cannot be modified. It should be set to AUTO." |
|---|
| [1156] | 1221 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
|---|
| 1222 | return |
|---|
| [1166] | 1223 | elif [ ${type} = nonblocker ] ; then |
|---|
| [1156] | 1224 | # Do nothing. Suppose that the user did set the variable correct |
|---|
| [1166] | 1225 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: ${key} is set by the user. Nothing done." |
|---|
| [1156] | 1226 | modify=no |
|---|
| [1166] | 1227 | elif [ ${type} = force ] ; then |
|---|
| [1156] | 1228 | # Force modification |
|---|
| [1166] | 1229 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist : Variabl=${key} was not set to AUTO. Modification will be forced." |
|---|
| [1085] | 1230 | modify=yes |
|---|
| [1156] | 1231 | fi |
|---|
| [1085] | 1232 | fi |
|---|
| 1233 | |
|---|
| 1234 | # Do the modifcation now |
|---|
| [1166] | 1235 | if [ ${modify} = yes ] ; then |
|---|
| [1085] | 1236 | |
|---|
| [1156] | 1237 | # For option DEFAULT, read default value from file. |
|---|
| [1166] | 1238 | if [ X"${value}" = XDEFAULT ] || [ X"${value}" = X ] ; then |
|---|
| [1156] | 1239 | # Case to set DEFAULT value |
|---|
| 1240 | # Read default value from filein |
|---|
| 1241 | value=$( echo $pattern | awk -F"DEFAULT *=" '{print $2}') |
|---|
| [1085] | 1242 | |
|---|
| [1166] | 1243 | if [ X"${value}" = X ] ; then |
|---|
| 1244 | IGCM_debug_Exit "IGCM_comp_modifyNamelist : The variable ${key} needs a DEFAULT value in ${filein}." |
|---|
| 1245 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: The syntax in ${filein} should be:" |
|---|
| 1246 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: ${key}=_AUTO_:DEFAULT=def_value" |
|---|
| [1156] | 1247 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
|---|
| 1248 | return |
|---|
| [1085] | 1249 | fi |
|---|
| [1156] | 1250 | fi |
|---|
| [1085] | 1251 | |
|---|
| [1156] | 1252 | # Now change key in filein |
|---|
| [1166] | 1253 | sed -e "s/${pattern}/ ${key}=${value}/" ${filein} > ${filein}.tmp |
|---|
| 1254 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: In ${filein} set ${key}=${value}" |
|---|
| 1255 | \mv ${filein}.tmp ${filein} |
|---|
| [1085] | 1256 | fi |
|---|
| 1257 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
|---|
| 1258 | } |
|---|
| 1259 | |
|---|
| 1260 | #======================================================================= |
|---|
| [1074] | 1261 | function IGCM_comp_modifyXmlFile |
|---|
| 1262 | { |
|---|
| 1263 | # |
|---|
| 1264 | # syntax: IGCM_comp_modifyXmlFile type filein keyid keyattrib value |
|---|
| 1265 | # |
|---|
| 1266 | # For example : IGCM_comp_modifyXmlFile force file_def_orchidee.xml sechiba2 enabled .TRUE. |
|---|
| 1267 | # or IGCM_comp_modifyXmlFile blocker iodef.xml using_server NONE false |
|---|
| 1268 | # |
|---|
| 1269 | # This function is used to modify the value for a specific attribute and variable id. |
|---|
| [1155] | 1270 | # The file must be a valid xml file. |
|---|
| [1075] | 1271 | # This function can be used in the comp.driver files for the components. |
|---|
| [1074] | 1272 | # |
|---|
| [1075] | 1273 | # Arguments: |
|---|
| 1274 | # - type : first argument must be blocker, nonblocker or force. |
|---|
| 1275 | # For "blocker" case, the variable must be attributed the keyworld AUTO |
|---|
| [1074] | 1276 | # otherwise this function will exit. |
|---|
| [1075] | 1277 | # For "nonblocker" case, the user can remove or modify the variable. For |
|---|
| [1074] | 1278 | # this case, as long as AUTO is not set, no modification will be done. |
|---|
| [1075] | 1279 | # For "force" case, the variable will be modified even if it is not set to AUTO |
|---|
| [1074] | 1280 | # - filein : the file in run directory of .xml type in which the variable should be set |
|---|
| 1281 | # - keyid : the variable to modify |
|---|
| 1282 | # - keyattrib : the attribute name to modify. If NONE, then the variable itself will be modified |
|---|
| 1283 | # - value : the value to set in the filein |
|---|
| 1284 | # |
|---|
| [1075] | 1285 | IGCM_debug_PushStack "IGCM_comp_modifyXmlFile" |
|---|
| [1074] | 1286 | |
|---|
| [1166] | 1287 | typeset type filein keyid keyattrib value modify |
|---|
| 1288 | |
|---|
| [1075] | 1289 | # Set local variables and test the arguments |
|---|
| 1290 | if [ $# = 5 ] ; then |
|---|
| 1291 | # Normal case with 4 arguments |
|---|
| 1292 | type=$1 ; filein=$2 ; keyid=$3 ; keyattrib=$4 ; value=$5 |
|---|
| 1293 | else |
|---|
| 1294 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile: Bad number of arguments." |
|---|
| [1089] | 1295 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
|---|
| [1075] | 1296 | return |
|---|
| 1297 | fi |
|---|
| [1166] | 1298 | IGCM_debug_Print 1 "Entering IGCM_comp_modifyXmlFile with arguments: type=${type} file=${filein}, id=${keyid} attribute=${keyattrib}, value=${value}" |
|---|
| [1074] | 1299 | |
|---|
| [1075] | 1300 | # Test if first argument is correct |
|---|
| [1166] | 1301 | if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then |
|---|
| [1075] | 1302 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile: Error in first argument must be blocker, nonblocker or force" |
|---|
| [1089] | 1303 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
|---|
| [1075] | 1304 | return |
|---|
| 1305 | fi |
|---|
| [1074] | 1306 | |
|---|
| [1075] | 1307 | # Test if the file exist |
|---|
| 1308 | if [ ! -f ${filein} ] ; then |
|---|
| [1166] | 1309 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile: ${filein} does not exist." |
|---|
| [1089] | 1310 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
|---|
| [1075] | 1311 | return |
|---|
| 1312 | fi |
|---|
| 1313 | |
|---|
| 1314 | # Test if keyid is set in filein, otherwise exit |
|---|
| [1166] | 1315 | if [ $( grep -w ${keyid} ${filein} | wc -l ) = 0 ] ; then |
|---|
| [1075] | 1316 | # Variable key is not set in filein, stop. |
|---|
| [1166] | 1317 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile : ${keyid} is not set in the file. Bad syntax of ${filein} file." |
|---|
| [1089] | 1318 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
|---|
| [1075] | 1319 | return |
|---|
| 1320 | fi |
|---|
| 1321 | |
|---|
| 1322 | # Check if AUTO is set on the same line as keyid and keyattrib |
|---|
| [1166] | 1323 | if [ $( grep -w ${keyid} ${filein} | grep AUTO | wc -l ) = 1 ] ; then |
|---|
| [1075] | 1324 | # Modifification will be done |
|---|
| 1325 | modify=yes |
|---|
| 1326 | else |
|---|
| [1166] | 1327 | if [ ${type} = blocker ] ; then |
|---|
| [1075] | 1328 | # Exit, the variable must be set to AUTO |
|---|
| [1166] | 1329 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile : blocker function. The ${keyattrib} for ${keyid} must be set to AUTO in ${filein}." |
|---|
| [1089] | 1330 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
|---|
| [1075] | 1331 | return |
|---|
| [1166] | 1332 | elif [ ${type} = nonblocker ] ; then |
|---|
| [1075] | 1333 | # Nothing will be done |
|---|
| 1334 | IGCM_debug_Print 1 "Nonblocker nothing is done for ${filein}, id=${keyid} and attribute ${keyattrib}" |
|---|
| 1335 | modify=no |
|---|
| [1166] | 1336 | elif [ ${type} = force ] ; then |
|---|
| [1075] | 1337 | # Force modification |
|---|
| [1166] | 1338 | IGCM_debug_Print 1 "IGCM_comp_modifyXmlFile : Attribute=${keyattrib} for id=${keyid} was not set to AUTO. Modification will be forced." |
|---|
| [1075] | 1339 | modify=yes |
|---|
| [1074] | 1340 | fi |
|---|
| [1075] | 1341 | fi |
|---|
| [1074] | 1342 | |
|---|
| [1075] | 1343 | # Do the modifcation now |
|---|
| [1166] | 1344 | if [ ${modify} = yes ] ; then |
|---|
| 1345 | if [ ${keyattrib} = NONE ] ; then |
|---|
| [1075] | 1346 | # Case to modify the variable itself |
|---|
| 1347 | IGCM_debug_Print 1 "Now modify ${filein} for id=${keyid} by setting the variable=${value}" |
|---|
| [1166] | 1348 | sed -e "s/\(<[^\"]*\"${keyid}\".*>\)\([^<]*\)\(<[^>]*\)/\1${value}\3/" ${filein} > ${filein}.tmp |
|---|
| [1074] | 1349 | else |
|---|
| [1156] | 1350 | # Check if keyattrib is set on the same line as keyid |
|---|
| [1166] | 1351 | if [ $( grep -w ${keyid} ${filein} | grep ${keyattrib} | wc -l ) = 1 ] ; then |
|---|
| [1156] | 1352 | # Case to modify the attribute value |
|---|
| 1353 | IGCM_debug_Print 1 "Now modify ${filein} for id=${keyid} by setting attribute to ${keyattrib}=${value}" |
|---|
| [1166] | 1354 | sed -e "/id=\"${keyid}\"/s/\(${keyattrib}=\"\)[^\"]*\(\"\)/\1${value}\2/" ${filein} > ${filein}.tmp |
|---|
| [1156] | 1355 | else |
|---|
| 1356 | # Case to add the attribute and its value |
|---|
| 1357 | IGCM_debug_Print 1 "Now add in ${filein} for id=${keyid} the attribute ${keyattrib} to the value ${value}" |
|---|
| [1166] | 1358 | sed -e "/id=\"${keyid}\"/s/\/>/ ${keyattrib}=\"${value}\"\/>/" ${filein} > ${filein}.tmp |
|---|
| [1156] | 1359 | fi |
|---|
| [1074] | 1360 | fi |
|---|
| [1166] | 1361 | \mv ${filein}.tmp ${filein} |
|---|
| [1075] | 1362 | fi |
|---|
| 1363 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
|---|
| [1074] | 1364 | } |
|---|
| 1365 | |
|---|
| 1366 | #======================================================================= |
|---|
| [2] | 1367 | function IGCM_comp_Update |
|---|
| 1368 | { |
|---|
| [544] | 1369 | IGCM_debug_PushStack "IGCM_comp_Update" |
|---|
| [2] | 1370 | |
|---|
| 1371 | # Debug Print : |
|---|
| [544] | 1372 | echo |
|---|
| 1373 | IGCM_debug_Print 1 "IGCM_comp_Update" |
|---|
| 1374 | echo |
|---|
| [2] | 1375 | |
|---|
| [902] | 1376 | typeset ExeNameIn ExeNameOut |
|---|
| [544] | 1377 | typeset comp compname comptagname |
|---|
| 1378 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| [902] | 1379 | # Define component |
|---|
| [544] | 1380 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
|---|
| 1381 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
|---|
| [2] | 1382 | |
|---|
| [544] | 1383 | # Copy executable for this component |
|---|
| 1384 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
|---|
| 1385 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
|---|
| [151] | 1386 | |
|---|
| [622] | 1387 | # If missing executable and DRYRUN is set to 0 or 1 then stop! |
|---|
| 1388 | if [ ${DRYRUN} -le 1 ] && [ X${ExeNameIn} != X\"\" ] && [ ! -f ${R_EXE}/${ExeNameIn} ] ; then |
|---|
| 1389 | IGCM_debug_Exit "IGCM_comp_Update missing executable ${ExeNameIn}" |
|---|
| [778] | 1390 | fi |
|---|
| [236] | 1391 | |
|---|
| [544] | 1392 | if [ ${Period} -eq 1 ] && [ -f ${R_EXE}/${ExeNameIn} ] ; then |
|---|
| 1393 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
|---|
| 1394 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
|---|
| 1395 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
|---|
| 1396 | fi |
|---|
| 1397 | elif [ -f ${R_EXE}/${ExeNameIn} ] && [ ! -f ${RUN_DIR}/${ExeNameOut} ] ; then |
|---|
| 1398 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
|---|
| 1399 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
|---|
| 1400 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
|---|
| 1401 | fi |
|---|
| 1402 | fi |
|---|
| [2] | 1403 | |
|---|
| [544] | 1404 | # Debug Print |
|---|
| 1405 | IGCM_debug_Print 1 "Update ${compname} Parameter Files." |
|---|
| 1406 | # UPDATE component |
|---|
| 1407 | ${comp}_Update |
|---|
| [2] | 1408 | |
|---|
| [544] | 1409 | done |
|---|
| [2] | 1410 | |
|---|
| [544] | 1411 | IGCM_debug_PopStack "IGCM_comp_Update" |
|---|
| [2] | 1412 | } |
|---|
| 1413 | |
|---|
| 1414 | #======================================================================= |
|---|
| 1415 | function IGCM_comp_Finalize |
|---|
| 1416 | { |
|---|
| [544] | 1417 | IGCM_debug_PushStack "IGCM_comp_Finalize" |
|---|
| [2] | 1418 | |
|---|
| [544] | 1419 | # Debug Print : |
|---|
| 1420 | echo |
|---|
| 1421 | IGCM_debug_Print 1 "IGCM_comp_Finalize" |
|---|
| 1422 | echo |
|---|
| [2] | 1423 | |
|---|
| [544] | 1424 | typeset ListTextName TextName0 |
|---|
| 1425 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles SaveOnArchive |
|---|
| 1426 | typeset i i_ file_in file_in_ file_out file_out_ file_outin file_outin_ generic_file_name nb_rebuild_file |
|---|
| [1165] | 1427 | typeset -Z4 j4 #BASH declare j4 |
|---|
| [544] | 1428 | typeset list_file nlist_file |
|---|
| 1429 | typeset compactoutputs |
|---|
| [429] | 1430 | |
|---|
| [1165] | 1431 | # Initialize array hosting list of rebuilded files to copy |
|---|
| 1432 | unset rebuildedActionsList |
|---|
| 1433 | |
|---|
| 1434 | # Text compacting options |
|---|
| [544] | 1435 | compactoutputs=false |
|---|
| 1436 | if [ X${JobType} != XRUN ] ; then |
|---|
| 1437 | compactoutputs=true |
|---|
| 1438 | elif [ X${config_UserChoices_CompactText} != Xn ] ; then |
|---|
| 1439 | compactoutputs=true |
|---|
| 1440 | fi |
|---|
| [433] | 1441 | |
|---|
| [1043] | 1442 | # Prepare headers for the shell dedicated to offline rebuild |
|---|
| 1443 | if [ X${AsynchronousRebuild} = Xtrue ] ; then |
|---|
| 1444 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
|---|
| 1445 | if [ ${DRYRUN} -le 1 ] ; then |
|---|
| 1446 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1447 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1448 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1449 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1450 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1451 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1452 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1453 | echo "export R_SAVE=${R_SAVE} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1454 | echo "export R_BUFR=${R_BUFR} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1455 | echo "export R_OUT_KSH=${R_OUT_KSH} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1456 | echo "export R_BUF_KSH=${R_BUF_KSH} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1457 | echo "export config_UserChoices_JobName=${config_UserChoices_JobName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1458 | echo "export config_UserChoices_SpaceName=${config_UserChoices_SpaceName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1459 | fi |
|---|
| 1460 | fi |
|---|
| 1461 | |
|---|
| [544] | 1462 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| [902] | 1463 | # Define component |
|---|
| [544] | 1464 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
|---|
| 1465 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
|---|
| [2] | 1466 | |
|---|
| [544] | 1467 | # Debug Print |
|---|
| 1468 | IGCM_debug_Print 1 "Finalize ${comp} : ${compname} component." |
|---|
| 1469 | # FINALIZE component |
|---|
| 1470 | ${comp}_Finalize |
|---|
| [2] | 1471 | |
|---|
| [778] | 1472 | card=${SUBMIT_DIR}/COMP/${compname}.card |
|---|
| [2] | 1473 | |
|---|
| [804] | 1474 | # Save Output Text files of models |
|---|
| 1475 | #--------------------------------- |
|---|
| 1476 | IGCM_debug_Print 2 "Save Output Text files for ${comp} : ${compname} component." |
|---|
| 1477 | IGCM_card_DefineArrayFromOption ${card} OutputText List |
|---|
| 1478 | ListTextName=${compname}_OutputText_List |
|---|
| 1479 | |
|---|
| 1480 | eval TextName0=\${${ListTextName}[0]} > /dev/null 2>&1 |
|---|
| 1481 | if [ X${TextName0} != X${NULL_STR} ] ; then |
|---|
| 1482 | eval NbFiles=\${#${ListTextName}[@]} > /dev/null 2>&1 |
|---|
| 1483 | |
|---|
| 1484 | (( i=0 )) |
|---|
| 1485 | until [ $i -eq $NbFiles ]; do |
|---|
| 1486 | eval file_in=\${${ListTextName}[$i]} > /dev/null 2>&1 |
|---|
| 1487 | eval file_out=${PREFIX}_${file_in} |
|---|
| 1488 | |
|---|
| 1489 | (( i=i+1 )) |
|---|
| 1490 | |
|---|
| 1491 | unset list_file |
|---|
| 1492 | #set +A list_file -- $( ls ${file_in}* | sort 2>/dev/null ) |
|---|
| 1493 | # result for a a1 a10 a2 with file_in=a a a1 a2 a10 |
|---|
| 1494 | set +A list_file -- $( [ -f ${file_in} ] && ls ${file_in} ; for i in $(ls ${file_in}* 2>/dev/null | sed "s/${file_in}//" | sort -n) ; do ls ${file_in}$i ; done ) |
|---|
| 1495 | nlist_file=${#list_file[@]} |
|---|
| 1496 | if [ ${nlist_file} -gt 1 ] ; then |
|---|
| 1497 | if ( ${compactoutputs} ) ; then |
|---|
| 1498 | IGCM_debug_Print 2 "Parallelism of Text Output with ${nlist_file} files." |
|---|
| 1499 | IGCM_debug_Print 2 "Compact files in ${file_out} : " ${list_file[*]} |
|---|
| 1500 | echo ${list_file[*]} > ${file_out} |
|---|
| 1501 | echo "" >> ${file_out} |
|---|
| 1502 | |
|---|
| 1503 | (( i_ = 0 )) |
|---|
| [1080] | 1504 | for file in ${list_file[@]} ; do |
|---|
| [804] | 1505 | echo "_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ " >> ${file_out} |
|---|
| 1506 | echo "| " ${i_} " " ${file} >> ${file_out} |
|---|
| 1507 | echo "- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - " >> ${file_out} |
|---|
| [999] | 1508 | cat ${file} | sed "s/\(.*\)/${i_}\1/" >> ${file_out} |
|---|
| [804] | 1509 | echo "" >> ${file_out} |
|---|
| 1510 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
|---|
| 1511 | (( i_ = i_ + 1 )) |
|---|
| 1512 | done |
|---|
| [1080] | 1513 | if ( ${ExecutionFail} ) ; then |
|---|
| 1514 | IGCM_sys_Cp ${file_out} ${SUBMIT_DIR}/Debug |
|---|
| 1515 | fi |
|---|
| 1516 | |
|---|
| [804] | 1517 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1518 | eval IGCM_sys_PutBuffer_Out ${file_out} \${R_BUF_${comp}_D}/${file_out} |
|---|
| 1519 | else |
|---|
| 1520 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}_D}/${file_out} |
|---|
| 1521 | fi |
|---|
| [1080] | 1522 | |
|---|
| [804] | 1523 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_out}" > /dev/null 2>&1 |
|---|
| [1080] | 1524 | else |
|---|
| 1525 | for file in ${list_file[@]} ; do |
|---|
| 1526 | if ( ${ExecutionFail} ) ; then |
|---|
| 1527 | IGCM_sys_Cp ${file} ${SUBMIT_DIR}/Debug/${PREFIX}_${file} |
|---|
| 1528 | fi |
|---|
| [804] | 1529 | |
|---|
| 1530 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1531 | eval IGCM_sys_PutBuffer_Out ${file} \${R_BUF_${comp}_D}/${PREFIX}_${file} |
|---|
| 1532 | else |
|---|
| 1533 | eval IGCM_sys_Put_Out ${file} \${R_OUT_${comp}_D}/${PREFIX}_${file} |
|---|
| 1534 | fi |
|---|
| [1080] | 1535 | |
|---|
| [804] | 1536 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
|---|
| 1537 | done |
|---|
| 1538 | fi |
|---|
| 1539 | else |
|---|
| 1540 | if ( [ -f ${file_in}_0000 ] || [ -f ${file_in}0 ] ) ; then |
|---|
| 1541 | eval IGCM_sys_Mv ${file_in}* ${file_in} |
|---|
| 1542 | fi |
|---|
| [1080] | 1543 | |
|---|
| 1544 | if ( ${ExecutionFail} ) ; then |
|---|
| 1545 | IGCM_sys_Cp ${file_in} ${SUBMIT_DIR}/Debug/${file_out} |
|---|
| 1546 | fi |
|---|
| 1547 | |
|---|
| [804] | 1548 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1549 | eval IGCM_sys_PutBuffer_Out ${file_in} \${R_BUF_${comp}_D}/${file_out} |
|---|
| 1550 | else |
|---|
| 1551 | eval IGCM_sys_Put_Out ${file_in} \${R_OUT_${comp}_D}/${file_out} |
|---|
| 1552 | fi |
|---|
| 1553 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
|---|
| 1554 | fi |
|---|
| 1555 | done |
|---|
| 1556 | fi |
|---|
| 1557 | |
|---|
| [544] | 1558 | # Save Restarts files |
|---|
| 1559 | #-------------------- |
|---|
| 1560 | IGCM_debug_Print 2 "Save Restart files for ${comp} : ${compname} component." |
|---|
| 1561 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
|---|
| 1562 | ListFilesName=${compname}_RestartFiles_List |
|---|
| 1563 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
|---|
| [778] | 1564 | |
|---|
| [544] | 1565 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
|---|
| 1566 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| [778] | 1567 | |
|---|
| [544] | 1568 | (( i=0 )) |
|---|
| 1569 | until [ $i -ge $NbFiles ]; do |
|---|
| [778] | 1570 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 1571 | eval file_in=${file_in_} |
|---|
| [2] | 1572 | |
|---|
| [778] | 1573 | (( i_ = i+1 )) |
|---|
| 1574 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 1575 | eval file_out=${file_out_} |
|---|
| [151] | 1576 | |
|---|
| [778] | 1577 | (( i_ = i+2 )) |
|---|
| 1578 | eval file_outin_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 1579 | eval file_outin=${file_outin_} |
|---|
| [151] | 1580 | |
|---|
| [778] | 1581 | generic_restart_file_name_in=$( basename ${file_in} .nc ) |
|---|
| 1582 | generic_restart_file_name_out=$( basename ${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} .nc ) |
|---|
| 1583 | generic_restart_file_name_outin=$( basename ${file_outin} .nc ) |
|---|
| [2] | 1584 | |
|---|
| [902] | 1585 | nb_restart_file=$( ls ${generic_restart_file_name_in}_????.nc 2>/dev/null | wc -l ) |
|---|
| [778] | 1586 | if [ ${nb_restart_file} -gt 1 ] ; then |
|---|
| [821] | 1587 | j=0 # BASH LINE NOT NEEDED |
|---|
| 1588 | # BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do |
|---|
| 1589 | until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED |
|---|
| 1590 | j4=${j} # BASH LINE NOT NEEDED |
|---|
| [778] | 1591 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1592 | eval IGCM_sys_PutBuffer_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_BUF_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
|---|
| 1593 | else |
|---|
| 1594 | eval IGCM_sys_Put_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_OUT_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
|---|
| 1595 | fi |
|---|
| 1596 | if [ ! ${file_in} = ${file_outin} ] ; then |
|---|
| 1597 | if ( ${ExitFlag} ) ; then |
|---|
| 1598 | echo "IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc not executed." |
|---|
| 1599 | else |
|---|
| 1600 | IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc |
|---|
| 1601 | fi |
|---|
| 1602 | fi |
|---|
| [821] | 1603 | (( j=j+1 )) # BASH LINE NOT NEEDED |
|---|
| [778] | 1604 | done |
|---|
| 1605 | else |
|---|
| 1606 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1607 | eval IGCM_sys_PutBuffer_Rest ${file_in} \${R_BUF_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
|---|
| 1608 | else |
|---|
| 1609 | eval IGCM_sys_Put_Rest ${file_in} \${R_OUT_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
|---|
| 1610 | fi |
|---|
| 1611 | if [ ! ${file_in} = ${file_outin} ] ; then |
|---|
| 1612 | if ( ${ExitFlag} ) ; then |
|---|
| 1613 | echo "IGCM_sys_Mv ${file_in} ${file_outin} not executed." |
|---|
| 1614 | else |
|---|
| 1615 | IGCM_sys_Mv ${file_in} ${file_outin} |
|---|
| 1616 | fi |
|---|
| 1617 | fi |
|---|
| 1618 | fi |
|---|
| 1619 | |
|---|
| 1620 | (( i=i+3 )) |
|---|
| [544] | 1621 | done |
|---|
| 1622 | else |
|---|
| 1623 | if [ X${FileName0} != XNONE ] ; then |
|---|
| [778] | 1624 | IGCM_debug_Exit "IGCM_comp_Finalize : No file in restart list for ${compname}." |
|---|
| [544] | 1625 | else |
|---|
| [778] | 1626 | IGCM_debug_Print 1 "IGCM_comp_Finalize : NONE specified in Restart List ${compname}." |
|---|
| [544] | 1627 | fi |
|---|
| 1628 | fi |
|---|
| [2] | 1629 | |
|---|
| [544] | 1630 | # Save Output files |
|---|
| 1631 | #------------------ |
|---|
| 1632 | IGCM_debug_Print 2 "Save Output files for ${comp} : ${compname} component." |
|---|
| 1633 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
|---|
| 1634 | ListFilesName=${compname}_OutputFiles_List |
|---|
| 1635 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
|---|
| [2] | 1636 | |
|---|
| [544] | 1637 | if [ X${FileName0} != X${NULL_STR} ] ; then |
|---|
| 1638 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| [149] | 1639 | |
|---|
| [544] | 1640 | (( i=0 )) |
|---|
| 1641 | until [ $i -ge $NbFiles ]; do |
|---|
| [778] | 1642 | SaveOnArchive=true |
|---|
| 1643 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 1644 | eval file_in=${file_in_} |
|---|
| 1645 | (( i_ = i+1 )) |
|---|
| 1646 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 1647 | eval file_out=${file_out_} |
|---|
| 1648 | # |
|---|
| 1649 | # Override file_out path remplacing R_SAVE by R_BUFR |
|---|
| 1650 | # |
|---|
| 1651 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1652 | file_out=$( echo $file_out | sed "s:^$R_SAVE:$R_BUFR:" ) |
|---|
| 1653 | fi |
|---|
| 1654 | # |
|---|
| 1655 | # Not necessarily the best option. /!\ Potential side effects /!\ |
|---|
| 1656 | # |
|---|
| 1657 | (( i_ = i+2 )) |
|---|
| 1658 | eval flag_post=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
|---|
| 1659 | # |
|---|
| 1660 | generic_file_name=$( basename ${file_in} .nc ) |
|---|
| 1661 | nb_rebuild_file=$( ls | grep "^${generic_file_name}_[0-9]*.nc" | wc -l ) |
|---|
| 1662 | # |
|---|
| 1663 | if ( [ ${nb_rebuild_file} -eq 1 ] && [ -f ${generic_file_name}_0000.nc ] ) ; then |
|---|
| [804] | 1664 | IGCM_debug_Print 2 "Parallelism with 1 file. Rebuilding ${file_in} not needed" |
|---|
| [778] | 1665 | IGCM_sys_Mv ${generic_file_name}_0000.nc ${file_in} |
|---|
| 1666 | elif [ ${nb_rebuild_file} -gt 1 ] ; then |
|---|
| [804] | 1667 | IGCM_debug_Print 2 "Parallelism detected and rebuilding ${file_in} is needed" |
|---|
| [778] | 1668 | if [ X${AsynchronousRebuild} = Xfalse ] ; then |
|---|
| 1669 | IGCM_debug_Print 2 "Rebuilding ${file_in} online" |
|---|
| [980] | 1670 | IGCM_sys_rebuild ${file_in} ${generic_file_name}_[0-9]*.nc |
|---|
| [778] | 1671 | else |
|---|
| 1672 | IGCM_debug_Print 2 "Preparing offline rebuild for ${file_in}" |
|---|
| [980] | 1673 | IGCM_sys_Mv ${generic_file_name}_[0-9]*.nc ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
|---|
| [544] | 1674 | |
|---|
| [778] | 1675 | # Prepare the shell dedicated to offline rebuild |
|---|
| 1676 | if [ $DRYRUN -le 1 ]; then |
|---|
| [694] | 1677 | if [ ${file_in} = histstn.nc ] ; then |
|---|
| 1678 | echo "IGCM_sys_rebuild_station ${file_in} ${generic_file_name}_*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1679 | else |
|---|
| [980] | 1680 | echo "IGCM_sys_rebuild ${file_in} ${generic_file_name}_[0-9]*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| [694] | 1681 | fi |
|---|
| 1682 | echo "IGCM_debug_Verif_Exit_Post" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| [778] | 1683 | fi |
|---|
| 1684 | # |
|---|
| 1685 | # Load Patch we need to apply and apply |
|---|
| 1686 | if [ $DRYRUN -le 1 ]; then |
|---|
| 1687 | if [ X$( eval echo \${${compname}_${flag_post}_Patches[0]} ) != X${NULL_STR} ]; then |
|---|
| [1080] | 1688 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ) ; do |
|---|
| [778] | 1689 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1690 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1691 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1692 | done |
|---|
| 1693 | fi |
|---|
| 1694 | fi |
|---|
| 1695 | # |
|---|
| 1696 | if [ $DRYRUN -le 1 ]; then |
|---|
| 1697 | if [ X${Pack} = Xtrue ] ; then |
|---|
| [1165] | 1698 | rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_sys_PutBuffer_Out ${file_in} ${file_out}" |
|---|
| [778] | 1699 | else |
|---|
| [1165] | 1700 | rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_sys_Put_Out ${file_in} ${file_out}" |
|---|
| [778] | 1701 | fi |
|---|
| [1165] | 1702 | rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_debug_Verif_Exit_Post" |
|---|
| 1703 | rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_sys_Rm ${generic_file_name}_[0-9]*.nc" |
|---|
| [778] | 1704 | fi |
|---|
| 1705 | SaveOnArchive=false |
|---|
| 1706 | fi |
|---|
| 1707 | fi |
|---|
| 1708 | # |
|---|
| 1709 | if [ ${SaveOnArchive} = true ] ; then |
|---|
| 1710 | # |
|---|
| 1711 | # Rebuild has been done online or it was not needed |
|---|
| 1712 | # |
|---|
| 1713 | # If we need to apply a patch we use TMP DIRECTORY before ARCHIVING if asynchronous rebuild is on |
|---|
| 1714 | # |
|---|
| 1715 | thereisapatch=$( eval echo \${${compname}_${flag_post}_Patches[0]} ) |
|---|
| 1716 | if ( [ ! X${thereisapatch} = X${NULL_STR} ] && [ X${AsynchronousRebuild} = Xtrue ] && [ -f ${file_in} ] ) ; then |
|---|
| 1717 | IGCM_sys_Mv ${file_in} ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
|---|
| 1718 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=REBUILD_${PeriodDateBegin}/${file_in} > /dev/null 2>&1 |
|---|
| 1719 | # |
|---|
| 1720 | if [ $DRYRUN -le 1 ]; then |
|---|
| [1080] | 1721 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ) ; do |
|---|
| [778] | 1722 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1723 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1724 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1725 | done |
|---|
| 1726 | # |
|---|
| 1727 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1728 | echo "IGCM_sys_PutBuffer_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1729 | else |
|---|
| 1730 | echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1731 | fi |
|---|
| 1732 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1733 | # |
|---|
| 1734 | fi |
|---|
| 1735 | else |
|---|
| 1736 | # |
|---|
| 1737 | # No Patch, No Asynchronous rebuild, online rebuild has been done or was not needed |
|---|
| 1738 | # |
|---|
| 1739 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1740 | IGCM_sys_PutBuffer_Out ${file_in} ${file_out} |
|---|
| 1741 | else |
|---|
| 1742 | IGCM_sys_Put_Out ${file_in} ${file_out} |
|---|
| 1743 | fi |
|---|
| 1744 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
|---|
| 1745 | if [ ${nb_rebuild_file} -gt 1 ] ; then |
|---|
| 1746 | for DelFile in $( ls | grep "${generic_file_name}[_0-9]*.nc" ) ; do |
|---|
| 1747 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${DelFile} > /dev/null 2>&1 |
|---|
| 1748 | done |
|---|
| 1749 | fi |
|---|
| 1750 | fi |
|---|
| 1751 | fi |
|---|
| 1752 | (( i=i+3 )) |
|---|
| [544] | 1753 | done |
|---|
| 1754 | fi |
|---|
| 1755 | echo |
|---|
| 1756 | done |
|---|
| [1165] | 1757 | # Append the sync call and the copy sequence to the IGCM_FlushRebuild function if needed |
|---|
| 1758 | if [ ${#rebuildedActionsList[*]} -ne 0 ] ; then |
|---|
| [1166] | 1759 | echo "IGCM_sys_sync " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| [1165] | 1760 | i=0 |
|---|
| 1761 | until [ ${i} -ge ${#rebuildedActionsList[*]} ]; do |
|---|
| 1762 | echo ${rebuildedActionsList[$i]} >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
|---|
| 1763 | (( i=i+1 )) |
|---|
| 1764 | done |
|---|
| 1765 | fi |
|---|
| [544] | 1766 | IGCM_debug_PopStack "IGCM_comp_Finalize" |
|---|
| [2] | 1767 | } |
|---|
