| 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Jacques Belier |
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| 5 | # Contact: |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | #--------------------------------------------------------------------- |
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| 14 | #- Installation of jobs according to environment |
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| 15 | #--------------------------------------------------------------------- |
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| 16 | function ins_job_Usage |
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| 17 | { |
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| 18 | print - " |
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| 19 | ins_job installs the jobs in the directories |
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| 20 | which contain a file config.card |
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| 21 | |
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| 22 | ins_job must be launched on the host |
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| 23 | on which the job will be submitted |
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| 24 | |
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| 25 | Usage : |
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| 26 | ${b_n} [-h] [-v] [-e] |
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| 27 | or on curie/TGCC : |
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| 28 | ${b_n} [-h] [-v] [-e] [-p project] [-c number of cores] |
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| 29 | |
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| 30 | Options : |
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| 31 | -h : help |
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| 32 | -v : verbose mode |
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| 33 | -e : turn on ensemble mode (hindcast/forecast or date restart) |
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| 34 | on curie only : |
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| 35 | -p project : add default project on curie |
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| 36 | -c number of cores : add default number of cores for postprocessing on curie 1-16 or 1-128 |
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| 37 | " |
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| 38 | } |
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| 39 | function ins_job_Warning |
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| 40 | { |
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| 41 | [[ ${x_v} = 'verbose' ]] && print - "\n############### WARNING ###############"; |
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| 42 | [[ ${x_v} = 'verbose' ]] && print - "File ${n_f} already exists\nin directory ${j}"; |
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| 43 | [[ ${x_v} = 'verbose' ]] && print - "You must delete this file to update !"; |
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| 44 | } |
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| 45 | |
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| 46 | function ins_job_Check_JobName |
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| 47 | { |
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| 48 | verif=${JobName##[a-zA-Z]*(?([.\-])[a-zA-Z0-9])} |
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| 49 | |
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| 50 | if [ ${#verif} -ne 0 ] ; then |
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| 51 | echo "################ ERROR ################" |
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| 52 | echo "${JobName} is invalid." |
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| 53 | echo "- JobName can only contain alphanumeric characters, \".\" and \"-\"" |
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| 54 | echo "- JobName must start with a letter" |
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| 55 | |
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| 56 | ((NbErr=NbErr+1)) |
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| 57 | |
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| 58 | Status=1 |
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| 59 | else |
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| 60 | Status=0 |
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| 61 | fi |
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| 62 | |
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| 63 | return ${Status} |
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| 64 | } |
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| 65 | |
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| 66 | #- |
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| 67 | # dirname and basename |
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| 68 | #- |
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| 69 | d_n=$(dirname ${0}); b_n=$(basename ${0}); |
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| 70 | #- |
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| 71 | # Retrieving and validation of the options |
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| 72 | #- |
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| 73 | x_v='silencious'; |
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| 74 | x_e=false; |
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| 75 | x_p=false; |
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| 76 | x_q=false; |
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| 77 | x_c=false; |
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| 78 | while getopts :hvec:p:q: V ; do |
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| 79 | case $V in |
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| 80 | (h) ins_job_Usage; exit 0;; |
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| 81 | (v) x_v='verbose';; |
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| 82 | (e) x_e=true;; |
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| 83 | (p) x_p=true |
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| 84 | ProjectID=${OPTARG} ;; |
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| 85 | (c) x_c=true |
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| 86 | ProjectCore=${OPTARG} ;; |
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| 87 | (:) echo ${b_n}" : -"${OPTARG}" option : missing value" 1>&2; |
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| 88 | exit 2;; |
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| 89 | (\?) echo ${b_n}" : -"${OPTARG}" option : not supported" 1>&2; |
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| 90 | exit 2;; |
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| 91 | esac |
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| 92 | done |
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| 93 | [ ${x_v} = 'silencious' ] && export DEBUG_sys=false |
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| 94 | shift $(($OPTIND-1)); |
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| 95 | #- |
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| 96 | # Define working files |
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| 97 | #- |
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| 98 | F_MOD=$(cd ${d_n}'/..';/bin/pwd;) |
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| 99 | # [[ ${F_MOD##*/} != 'modipsl' ]] && \ |
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| 100 | # { print - "directory 'modipsl' unreachable"; exit 3; } |
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| 101 | W_W=${d_n}'/../libIGCM' |
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| 102 | [[ ! -d ${W_W} ]] && { print - "${W_W} unreachable"; exit 3; } |
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| 103 | libIGCM=$(cd ${W_W};/bin/pwd;) |
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| 104 | F_JOB=${libIGCM}'/AA_job'; |
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| 105 | [[ ! -f ${F_JOB} ]] && { print - "${F_JOB} unreachable"; exit 3; } |
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| 106 | F_RCI=${libIGCM}'/run.card.init'; |
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| 107 | [[ ! -f ${F_RCI} ]] && { print - "${F_RCI} unreachable"; exit 3; } |
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| 108 | #- |
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| 109 | # Accessing to functions (without stack) |
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| 110 | #- |
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| 111 | # No verbosity (0, 1, 2, 3) |
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| 112 | Verbosity=0 |
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| 113 | # No de debug |
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| 114 | DEBUG_debug=false |
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| 115 | # Dont move libIGCM |
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| 116 | MirrorlibIGCM=false |
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| 117 | # Behave like computing job |
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| 118 | TaskType=computing |
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| 119 | # Source libIGCM |
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| 120 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 121 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 122 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 123 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 124 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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| 125 | if [ $x_e = 'true' ] ; then |
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| 126 | . ${libIGCM}/libIGCM_ensemble/libIGCM_ensemble.ksh |
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| 127 | fi |
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| 128 | |
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| 129 | #- |
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| 130 | [[ ${x_v} = 'verbose' ]] && \ |
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| 131 | { |
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| 132 | print - ""; |
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| 133 | print - '--- Host : '${SYSTEM}; |
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| 134 | print - '--- modipsl : '${F_MOD}; |
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| 135 | print - '--- libIGCM : '${libIGCM}; |
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| 136 | print - '--- basic job : '${F_JOB}; |
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| 137 | print - '--- basic card : '${F_RCI}; |
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| 138 | } |
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| 139 | #- |
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| 140 | [[ ${x_v} = 'verbose' ]] && print - "\nInstallation of jobs for '${SYSTEM}'"; |
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| 141 | #- |
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| 142 | |
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| 143 | NbErr=0 |
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| 144 | |
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| 145 | #- |
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| 146 | # Define Project parameters to set up jobs header for Curie (TGCC) |
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| 147 | # on curie define ProjectID and ProjectCore : option or answer |
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| 148 | # on curie ProjectNode forced to standard since 16/3/2016 |
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| 149 | #- |
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| 150 | |
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| 151 | if [ X"${SYSTEM}" == "Xcurie" ] ; then |
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| 152 | if ( ! ${x_p} ) ; then |
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| 153 | ProjectID=$( ccc_myproject | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | head -n 1 ) |
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| 154 | ProjectID=${ProjectID:="gencmip6"} |
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| 155 | answer="" |
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| 156 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u ) ) :" |
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| 157 | read answer |
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| 158 | |
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| 159 | if [ "X${answer}" != "X" ] ; then |
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| 160 | ProjectID=${answer} |
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| 161 | fi |
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| 162 | fi # if ( ! ${x_p} ) |
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| 163 | |
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| 164 | #- ProjectNode forced to standard since 16/3/2016 |
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| 165 | ProjectNode="standard" |
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| 166 | |
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| 167 | echo ProjectID is ${ProjectID} and ProjectNode for PostProcessing is ${ProjectNode} |
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| 168 | |
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| 169 | #- ProjectNode is known (standard since 16/3/2016) set ProjectCoreMax |
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| 170 | ProjectCoreMax="16" |
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| 171 | |
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| 172 | if ( ! ${x_c} ) ; then |
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| 173 | #- ProjectNode is known (standard since 16/3/2016), set ProjectCore to default or answer |
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| 174 | ProjectCore="4" |
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| 175 | answerOK=false |
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| 176 | |
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| 177 | while ( ! ${answerOK} ) ; do |
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| 178 | answer="" |
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| 179 | print - "Hit Enter or give NUMBER OF CORES required for post-processing (default is \"${ProjectCore}\"), possible numbers of cores are \"1\" to \"${ProjectCoreMax}\" : " |
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| 180 | read answer |
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| 181 | [ "X${answer}" == "X" ] || [ ${answer} -ge 1 -a ${answer} -le ${ProjectCoreMax} ] && answerOK=true |
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| 182 | done |
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| 183 | |
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| 184 | if [ "X${answer}" != "X" ] ; then |
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| 185 | ProjectCore=${answer} |
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| 186 | fi |
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| 187 | |
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| 188 | fi # if ( ! ${x_c} ) |
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| 189 | |
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| 190 | echo ProjectCore is ${ProjectCore} |
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| 191 | #- ProjectCore is set (option or answer) |
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| 192 | |
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| 193 | else |
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| 194 | echo No option for Header regarding ProjectID, ProjectNode and ProjectCore because we are not on curie |
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| 195 | fi # if [ X"${SYSTEM}" == "Xcurie" ] |
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| 196 | |
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| 197 | #- |
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| 198 | # Define the pattern string to substitute |
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| 199 | #- |
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| 200 | W_P='#-Q- '; W_W=${W_P}${SYSTEM}; |
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| 201 | #- |
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| 202 | # Extract list of 'config.card' files |
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| 203 | # and create jobs with AA_job |
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| 204 | #- |
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| 205 | F_CFG='config.card'; |
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| 206 | F_CFG_ENS='ensemble.card'; |
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| 207 | SUBMIT_DIR_ENS=$( pwd ) |
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| 208 | for i in $( pwd )/config.card |
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| 209 | do |
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| 210 | if [ ! -f $i ] ; then |
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| 211 | echo "" |
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| 212 | echo "################## WARNING ##################" |
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| 213 | echo "No config.card available in current directory" |
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| 214 | echo "" |
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| 215 | continue |
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| 216 | fi |
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| 217 | |
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| 218 | |
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| 219 | j=$(cd ${i%/*};/bin/pwd;) |
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| 220 | n_f=${F_RCI##*/}; |
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| 221 | |
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| 222 | if [ ! X$( echo ${j} | grep EXPERIMENTS ) = X ] ; then |
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| 223 | # Do not treat config.card if it is in sub-directory of EXPERIMENTS |
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| 224 | # Continue to next config.card |
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| 225 | continue |
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| 226 | else |
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| 227 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
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| 228 | fi |
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| 229 | |
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| 230 | # Find out if new structure and set .resol filename |
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| 231 | if [ -d ${j}/EXPERIMENTS ] && [ -d ${j}/GENERAL ] ; then |
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| 232 | # New Structure |
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| 233 | [[ ${x_v} = 'verbose' ]] && echo "This is new configuration structure" |
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| 234 | new_struct=yes |
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| 235 | resolfile=$j/.resol |
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| 236 | else |
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| 237 | # Old Structure |
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| 238 | new_struct=no |
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| 239 | resolfile=$j/../.resol |
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| 240 | fi |
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| 241 | |
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| 242 | # Get all variables declared in section UserChoices in config.card |
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| 243 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} UserChoices |
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| 244 | # Set default values |
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| 245 | config_UserChoices_ExpType="" |
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| 246 | RESOL_ATM_3D=this_is_a_test_string |
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| 247 | RESOL=this_is_another_test_string |
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| 248 | typeset option |
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| 249 | for option in ${config_UserChoices[*]} ; do |
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| 250 | IGCM_card_DefineVariableFromOption ${j}'/'${F_CFG} UserChoices ${option} |
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| 251 | done |
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| 252 | |
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| 253 | # Find the JobName : JobName might contain the variable RESOL_ATM_3D that will be replaced by what is in .resol file |
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| 254 | if [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL_ATM_3D} ) = X ] ; then |
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| 255 | TRUERESOL=$( tail -1 $resolfile | awk "-F=" '{print $2}' ) |
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| 256 | echo TRUERESOL = $TRUERESOL |
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| 257 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL_ATM_3D}/${TRUERESOL}/" ) |
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| 258 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
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| 259 | elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL} ) = X ] ; then |
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| 260 | TRUERESOL=$( head -1 $resolfile ) |
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| 261 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL}/${TRUERESOL}/" ) |
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| 262 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
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| 263 | else |
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| 264 | JobName=${config_UserChoices_JobName} |
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| 265 | fi |
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| 266 | |
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| 267 | # Check JobName validity : only alphanumerical characters, "-" and "." are authorized |
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| 268 | ins_job_Check_JobName |
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| 269 | RetCode=$? |
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| 270 | [[ $RetCode -gt 0 ]] && continue |
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| 271 | |
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| 272 | [[ ${x_v} = 'verbose' ]] && echo "JobName=${JobName}" |
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| 273 | |
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| 274 | # Add specific treatment for new type of directory structure |
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| 275 | if [ ${new_struct} == yes ] ; then |
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| 276 | |
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| 277 | if [ "X${config_UserChoices_ExpType}" = X ] ; then |
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| 278 | echo "\nERROR in ${j}/config.card" |
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| 279 | echo "ins_job stops here" |
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| 280 | echo "=> The variable ExpType must be added in config.card in section UserChoices" |
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| 281 | echo "=> ExpType gives the directory for the .card configuration files for the wanted experiement. For exemple ExpType=IPSLCM5/historical" |
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| 282 | exit 4 |
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| 283 | else |
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| 284 | [[ ${x_v} = 'verbose' ]] && echo "ExpType= ${config_UserChoices_ExpType}" |
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| 285 | fi |
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| 286 | |
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| 287 | if [ -d ${j}/${JobName} ] ; then |
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| 288 | echo "Directory ${j}/${JobName} exist already, continue next config.card" |
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| 289 | continue |
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| 290 | fi |
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| 291 | echo "=> Submit directory ${JobName} will be created with cards from EXPERIMENTS/${config_UserChoices_ExpType}" |
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| 292 | cp -r ${j}/EXPERIMENTS/${config_UserChoices_ExpType} ${j}/${JobName} |
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| 293 | cp -r ${j}/GENERAL/* ${j}/${JobName}/. |
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| 294 | cp -f ${j}/${F_CFG} ${j}/${JobName}/. |
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| 295 | if [ -f ${F_CFG_ENS} ] ; then |
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| 296 | cp -f ${j}/${F_CFG_ENS} ${j}/${JobName}/. |
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| 297 | SUBMIT_DIR_ENS=${j}/${JobName} |
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| 298 | fi |
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| 299 | rm -f ${j}/${F_CFG} |
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| 300 | rm -f ${j}/${F_CFG_ENS} |
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| 301 | rm -f ${j}/${F_CFG}.bak |
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| 302 | j=${j}/${JobName} |
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| 303 | [[ ${x_v} = 'verbose' ]] && echo new j=$j |
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| 304 | fi |
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| 305 | # end specific treatment for new type directory structure |
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| 306 | |
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| 307 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; } || \ |
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| 308 | { |
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| 309 | [[ ${x_v} = 'verbose' ]] && print - "\nCopying file ${F_RCI}\nin directory ${j}"; |
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| 310 | \cp ${F_RCI} ${j}; |
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| 311 | } |
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| 312 | |
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| 313 | #================================== |
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| 314 | # Read ListOfComponents section: |
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| 315 | #echo |
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| 316 | #IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents" |
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| 317 | |
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| 318 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} ListOfComponents |
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| 319 | for comp in ${config_ListOfComponents[*]} ; do |
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| 320 | IGCM_card_DefineArrayFromOption ${j}'/'${F_CFG} ListOfComponents ${comp} |
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| 321 | done |
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| 322 | #IGCM_debug_Print 3 ${config_ListOfComponents[*]} |
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| 323 | |
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| 324 | #================================== |
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| 325 | # Read Executable section: |
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| 326 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} Executable |
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| 327 | |
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| 328 | # Define the execution context (MPMD, SPMD, MPI/OMP ...) |
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| 329 | IGCM_config_ConfigureExecution ${j}'/'${F_CFG} |
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| 330 | |
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| 331 | # coreNumber : TOTAL NUMBER OF CORES |
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| 332 | # mpiTasks : TOTAL NUMBER OF MPI TASKS |
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| 333 | # openMPthreads : NUMBER OF OpenMP THREADS |
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| 334 | |
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| 335 | # File name for Job |
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| 336 | n_f='Job_'${JobName}; |
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| 337 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
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| 338 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
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| 339 | sed -e "/^${W_W} */ s///" \ |
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| 340 | -e "/^${W_P}/d" \ |
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| 341 | -e "s%::modipsl::%${F_MOD}%" \ |
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| 342 | -e "s/::Jobname::/${JobName}/" \ |
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| 343 | -e "s/::default_project::/${ProjectID}/" \ |
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| 344 | ${F_JOB} > ${j}'/'${n_f} |
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| 345 | chmod u+x ${j}'/'${n_f} |
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| 346 | |
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| 347 | # update Headers so that ressources description are accurate (MPMD/SPMD/...) |
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| 348 | IGCM_sys_updateHeaders ${j}'/'${n_f} |
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| 349 | done |
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| 350 | |
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| 351 | #- |
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| 352 | # Extract list of AA_* files in libIGCM |
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| 353 | # and create jobs (for all except AA_job) |
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| 354 | #- |
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| 355 | for i in $(find ${libIGCM} -maxdepth 1 -name "AA_*" -print) |
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| 356 | do |
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| 357 | i_f=${i##*/}; |
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| 358 | [[ ${i_f} = 'AA_job' ]] && { continue; } |
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| 359 | j=${i%/*}; n_f=${i_f#AA_}'.job'; |
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| 360 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
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| 361 | [[ ${x_v} = 'verbose' ]] && print - "\nIn directory ${j}\n${i_f} -> ${n_f}" |
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| 362 | sed -e "/^${W_W} */ s///" \ |
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| 363 | -e "s%::modipsl::%${F_MOD}%" \ |
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| 364 | -e "/^${W_P}/d" \ |
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| 365 | -e "s/::default_node::/${ProjectNode}/" \ |
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| 366 | -e "s/::default_core::/${ProjectCore}/" \ |
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| 367 | -e "s/::default_project::/${ProjectID}/" \ |
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| 368 | ${i} > ${j}'/'${n_f} |
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| 369 | chmod u+x ${j}'/'${n_f} |
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| 370 | done |
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| 371 | #- |
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| 372 | # set default_project in libIGCM_sys_curie.ksh too. |
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| 373 | #- |
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| 374 | if [ X"${SYSTEM}" == "Xcurie" ] ; then |
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| 375 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh |
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| 376 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
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| 377 | fi |
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| 378 | #- |
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| 379 | # Limited to hindcast/forecast and date restart Ensemble for the time being |
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| 380 | if [ ${x_e} = 'true' ] ; then |
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| 381 | #.. Read input data from ensemble.card .. |
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| 382 | SUBMIT_DIR=${SUBMIT_DIR_ENS} |
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| 383 | RUN_DIR="${WORKDIR}/ENSEMBLE" |
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| 384 | # |
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| 385 | # Copy initial things around and define variables (hindcast/forecast case) |
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| 386 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 387 | IGCM_ensemble_Init |
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| 388 | |
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| 389 | if [[ ${ensemble_Ens_PARAMETRIC_active} = 'y' ]] ; then |
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| 390 | echo "WARNING: Parametric Ensemble is not implemented yet..." |
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| 391 | fi |
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| 392 | |
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| 393 | if [[ ${ensemble_Ens_DATE_active} = 'y' ]] ; then |
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| 394 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 395 | IGCM_ensemble_DateInit |
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| 396 | # As it says |
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| 397 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 398 | IGCM_ensemble_DatePeriodicStarts |
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| 399 | # As it says |
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| 400 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 401 | IGCM_ensemble_DateNonPeriodicStarts |
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| 402 | # Clean |
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| 403 | IGCM_sys_Rm -rf ${RUN_DIR} |
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| 404 | fi |
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| 405 | |
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| 406 | if [[ ${ensemble_Ens_PERTURB_active} = 'y' ]] ; then |
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| 407 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 408 | IGCM_ensemble_CastInit |
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| 409 | # As it says |
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| 410 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 411 | IGCM_ensemble_CastPeriodicStarts |
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| 412 | # As it says |
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| 413 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 414 | IGCM_ensemble_CastNonPeriodicStarts |
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| 415 | # As it says |
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| 416 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 417 | IGCM_ensemble_CastMemberList |
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| 418 | # Done |
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| 419 | IGCM_sys_Cp ${RUN_DIR}/CreatedDir.txt ${SUBMIT_DIR} |
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| 420 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 421 | # Clean |
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| 422 | IGCM_sys_Rm -rf ${RUN_DIR} |
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| 423 | fi |
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| 424 | fi |
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| 425 | #- |
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| 426 | [[ ${x_v} = 'verbose' ]] && print - ""; |
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| 427 | #- |
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| 428 | # That's all folks |
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| 429 | #- |
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| 430 | |
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| 431 | if [ ${NbErr} -ne 0 ] ; then |
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| 432 | echo "################ ERROR ################" |
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| 433 | echo "${NbErr} invalid JobName(s) found, check the log" |
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| 434 | fi |
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| 435 | |
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| 436 | |
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| 437 | exit 0; |
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