[1164] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Jacques Belier |
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| 5 | # Contact: |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | #--------------------------------------------------------------------- |
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| 14 | #- Installation of jobs according to environment |
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| 15 | #--------------------------------------------------------------------- |
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| 16 | function ins_job_Usage |
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| 17 | { |
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| 18 | print - " |
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| 19 | ins_job installs the jobs in the directories |
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| 20 | which contain a file config.card |
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| 21 | |
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| 22 | ins_job must be launched on the host |
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| 23 | on which the job will be submitted |
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| 24 | |
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| 25 | Usage : |
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[1274] | 26 | ${b_n} [-h] [-v] [-e] |
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[1468] | 27 | or on irene/TGCC : |
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[1471] | 28 | ${b_n} [-h] [-v] [-e] [-p project] [-q type_of_node] [-c number of cores] |
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[1305] | 29 | or on ada /IDRIS |
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| 30 | ${b_n} [-h] [-v] [-e] [-m MPI environment] |
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[1164] | 31 | Options : |
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[1274] | 32 | -h : help |
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| 33 | -v : verbose mode |
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| 34 | -e : turn on ensemble mode (hindcast/forecast or date restart) |
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[1401] | 35 | -f : ins_job is force to create jobs even if they already exist |
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[1468] | 36 | on irene only : |
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| 37 | -p project : add default project on irene |
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| 38 | -q type_of_node : add default type of nodes for postprocessing on irene skylake/xlarge |
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| 39 | -c number of cores : add default number of cores for postprocessing on irene 1-112 |
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[1305] | 40 | on ada only : |
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| 41 | - m MPI environment : add default MPI environment (Intel MPI or IBM MPI) |
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[1536] | 42 | -t wall time : change default wall time |
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[1164] | 43 | " |
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| 44 | } |
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| 45 | function ins_job_Warning |
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| 46 | { |
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| 47 | [[ ${x_v} = 'verbose' ]] && print - "\n############### WARNING ###############"; |
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| 48 | [[ ${x_v} = 'verbose' ]] && print - "File ${n_f} already exists\nin directory ${j}"; |
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| 49 | [[ ${x_v} = 'verbose' ]] && print - "You must delete this file to update !"; |
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| 50 | } |
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| 51 | |
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| 52 | function ins_job_Check_JobName |
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| 53 | { |
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| 54 | verif=${JobName##[a-zA-Z]*(?([.\-])[a-zA-Z0-9])} |
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| 55 | |
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| 56 | if [ ${#verif} -ne 0 ] ; then |
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| 57 | echo "################ ERROR ################" |
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| 58 | echo "${JobName} is invalid." |
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| 59 | echo "- JobName can only contain alphanumeric characters, \".\" and \"-\"" |
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| 60 | echo "- JobName must start with a letter" |
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| 61 | |
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| 62 | ((NbErr=NbErr+1)) |
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| 63 | |
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| 64 | Status=1 |
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| 65 | else |
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| 66 | Status=0 |
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| 67 | fi |
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| 68 | |
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| 69 | return ${Status} |
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| 70 | } |
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| 71 | |
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| 72 | #- |
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| 73 | # dirname and basename |
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| 74 | #- |
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| 75 | d_n=$(dirname ${0}); b_n=$(basename ${0}); |
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| 76 | #- |
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| 77 | # Retrieving and validation of the options |
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| 78 | #- |
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| 79 | x_v='silencious'; |
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| 80 | x_e=false; |
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[1401] | 81 | x_f=false; |
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[1164] | 82 | x_p=false; |
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[1468] | 83 | x_q=false; |
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[1274] | 84 | x_c=false; |
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[1305] | 85 | x_m=false; |
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[1536] | 86 | x_t=false; |
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| 87 | while getopts :hvefc:p:m:q:s:t: V ; do |
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[1164] | 88 | case $V in |
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| 89 | (h) ins_job_Usage; exit 0;; |
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| 90 | (v) x_v='verbose';; |
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| 91 | (e) x_e=true;; |
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[1401] | 92 | (f) x_f=true;; |
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[1164] | 93 | (p) x_p=true |
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| 94 | ProjectID=${OPTARG} ;; |
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[1468] | 95 | (q) x_q=true |
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| 96 | ProjectNode=${OPTARG} ;; |
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[1274] | 97 | (c) x_c=true |
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| 98 | ProjectCore=${OPTARG} ;; |
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[1305] | 99 | (m) x_m=true |
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| 100 | MPIEnvironment=${OPTARG} ;; |
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[1536] | 101 | (t) x_t=true |
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| 102 | WallTime=${OPTARG} ;; |
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[1164] | 103 | (:) echo ${b_n}" : -"${OPTARG}" option : missing value" 1>&2; |
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| 104 | exit 2;; |
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| 105 | (\?) echo ${b_n}" : -"${OPTARG}" option : not supported" 1>&2; |
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| 106 | exit 2;; |
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| 107 | esac |
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| 108 | done |
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| 109 | [ ${x_v} = 'silencious' ] && export DEBUG_sys=false |
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| 110 | shift $(($OPTIND-1)); |
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| 111 | #- |
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| 112 | # Define working files |
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| 113 | #- |
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| 114 | F_MOD=$(cd ${d_n}'/..';/bin/pwd;) |
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| 115 | # [[ ${F_MOD##*/} != 'modipsl' ]] && \ |
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| 116 | # { print - "directory 'modipsl' unreachable"; exit 3; } |
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| 117 | W_W=${d_n}'/../libIGCM' |
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| 118 | [[ ! -d ${W_W} ]] && { print - "${W_W} unreachable"; exit 3; } |
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| 119 | libIGCM=$(cd ${W_W};/bin/pwd;) |
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| 120 | F_JOB=${libIGCM}'/AA_job'; |
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| 121 | [[ ! -f ${F_JOB} ]] && { print - "${F_JOB} unreachable"; exit 3; } |
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[1569] | 122 | F_JOB_DEBUG=${libIGCM}'/AA_job_debug'; |
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| 123 | [[ ! -f ${F_JOB_DEBUG} ]] && { print - "${F_JOB_DEBUG} unreachable"; exit 3; } |
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[1164] | 124 | F_RCI=${libIGCM}'/run.card.init'; |
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| 125 | [[ ! -f ${F_RCI} ]] && { print - "${F_RCI} unreachable"; exit 3; } |
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| 126 | #- |
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| 127 | # Accessing to functions (without stack) |
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| 128 | #- |
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[1249] | 129 | # No verbosity (0, 1, 2, 3) |
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| 130 | Verbosity=0 |
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| 131 | # No de debug |
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[1164] | 132 | DEBUG_debug=false |
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[1249] | 133 | # Dont move libIGCM |
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[1164] | 134 | MirrorlibIGCM=false |
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[1249] | 135 | # Behave like computing job |
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[1164] | 136 | TaskType=computing |
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[1249] | 137 | # Source libIGCM |
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[1164] | 138 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 139 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 140 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 141 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[1242] | 142 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[1164] | 143 | if [ $x_e = 'true' ] ; then |
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| 144 | . ${libIGCM}/libIGCM_ensemble/libIGCM_ensemble.ksh |
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| 145 | fi |
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| 146 | |
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[1172] | 147 | #- |
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| 148 | [[ ${x_v} = 'verbose' ]] && \ |
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| 149 | { |
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| 150 | print - ""; |
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| 151 | print - '--- Host : '${SYSTEM}; |
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| 152 | print - '--- modipsl : '${F_MOD}; |
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| 153 | print - '--- libIGCM : '${libIGCM}; |
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| 154 | print - '--- basic job : '${F_JOB}; |
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| 155 | print - '--- basic card : '${F_RCI}; |
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| 156 | } |
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| 157 | #- |
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| 158 | [[ ${x_v} = 'verbose' ]] && print - "\nInstallation of jobs for '${SYSTEM}'"; |
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| 159 | #- |
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| 160 | |
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[1164] | 161 | NbErr=0 |
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| 162 | |
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| 163 | #- |
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[1470] | 164 | # Define Project parameters to set up jobs header for Irene (TGCC) |
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| 165 | # on Irene define ProjectID and ProjectCore : option or answer |
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| 166 | # on Irene ProjectNode default projectnode set to xlarge since 17/10/2018 |
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[1164] | 167 | #- |
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[1274] | 168 | |
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[1164] | 169 | |
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[1470] | 170 | if [ X"${SYSTEM}" == "Xirene" ] ; then |
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[1322] | 171 | |
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[1470] | 172 | #- set ProjectID if required |
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[1437] | 173 | if ( ! ${x_p} ) ; then |
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[1471] | 174 | print - "Wait for the next question ..." |
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[1470] | 175 | #- default ProjectID |
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| 176 | ProjectID=$( ccc_myproject | grep -i irene |grep -i skylake | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u | grep -v gencmip6 | head -n 1 ) |
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[1437] | 177 | answer="" |
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[1470] | 178 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | grep -i irene | grep -i skylake | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u ) ) or other xxxcmip6 : $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ; echo ) " |
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[1437] | 179 | read answer |
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| 180 | |
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| 181 | if [ "X${answer}" != "X" ] ; then |
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| 182 | ProjectID=${answer} |
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| 183 | fi |
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| 184 | |
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| 185 | fi # if ( ! ${x_p} ) |
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| 186 | |
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| 187 | echo ProjectID is ${ProjectID} at Irene |
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| 188 | |
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[1465] | 189 | |
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[1470] | 190 | # set ProjectNode if required |
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[1468] | 191 | if ( ! ${x_q} ) ; then |
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[1470] | 192 | #- default ProjectNode |
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| 193 | ProjectNode="xlarge" |
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[1471] | 194 | #- is xlarge possible for ${ProjectID} ? |
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[1533] | 195 | echo $(ccc_myproject | grep -i irene | grep -i xlarge | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u) $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ) | grep ${ProjectID} >/dev/null 2>&1 || ProjectNode="xlarge" |
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[1471] | 196 | |
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| 197 | if [ "X${ProjectNode}" == "Xxlarge" ] ; then |
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| 198 | answerOK=false |
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[1468] | 199 | |
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[1471] | 200 | while ( ! ${answerOK} ) ; do |
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| 201 | answer="" |
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| 202 | print - "Hit Enter or give TYPE OF NODE required for post-processing (default is \"${ProjectNode}\"), possible types of nodes are \"skylake\" or \"xlarge\" : " |
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| 203 | read answer |
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| 204 | [ "X${answer}" == "X" ] || [ "X${answer}" == "Xskylake" ] || [ "X${answer}" == "Xxlarge" ] && answerOK=true |
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| 205 | done |
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[1468] | 206 | |
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[1471] | 207 | if [ "X${answer}" != "X" ] ; then |
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| 208 | ProjectNode=${answer} |
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| 209 | fi |
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| 210 | |
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| 211 | else |
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| 212 | print - "PostProcessing will be done on ${ProjectNode}" |
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| 213 | fi |
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[1468] | 214 | |
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| 215 | fi # if ( ! ${x_q} ) |
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[1470] | 216 | echo ProjectNode for post-processing is ${ProjectNode} at Irene |
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[1465] | 217 | |
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[1468] | 218 | #- ProjectNode is known (option or answer) set ProjectCoreMax |
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| 219 | [ "${ProjectNode}" = "xlarge" ] && ProjectCoreMax="112" || ProjectCoreMax="48" |
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| 220 | #- ProjectCoreMax is 48 for standard and 112 for xlarge |
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| 221 | |
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[1465] | 222 | if ( ! ${x_c} ) ; then |
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[1468] | 223 | #- ProjectNode is known (option or answer), set ProjectCore default |
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| 224 | [ "${ProjectNode}" = "xlarge" ] && ProjectCore="8" || ProjectCore="4" |
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[1470] | 225 | |
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| 226 | # let check minimum/maximum value 1/${ProjectCoreMax} |
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| 227 | |
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[1465] | 228 | answerOK=false |
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| 229 | |
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| 230 | while ( ! ${answerOK} ) ; do |
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| 231 | answer="" |
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[1471] | 232 | print - "possible numbers of cores are \"1\" to \"${ProjectCoreMax}\" for ${ProjectNode} : " |
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[1468] | 233 | print - "Hit Enter or give NUMBER OF CORES required for post-processing (default is \"${ProjectCore}\")" |
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[1465] | 234 | read answer |
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| 235 | [ "X${answer}" == "X" ] || [ ${answer} -ge 1 -a ${answer} -le ${ProjectCoreMax} ] && answerOK=true |
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| 236 | done |
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| 237 | |
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| 238 | if [ "X${answer}" != "X" ] ; then |
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| 239 | ProjectCore=${answer} |
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| 240 | fi |
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| 241 | |
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| 242 | fi # if ( ! ${x_c} ) |
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| 243 | |
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[1470] | 244 | echo ProjectCore for post-processing is ${ProjectCore} |
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[1465] | 245 | #- ProjectCore is set (option or answer) |
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| 246 | |
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[1536] | 247 | #- set WallTime if required |
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| 248 | if ( ! ${x_t} ) ; then |
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| 249 | #- default WallTime 1800 s |
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| 250 | WallTime=1800 |
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| 251 | answer="" |
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| 252 | print - "Hit Enter or give required wall time in seconds for computing job (default is \"${WallTime}\" seconds, maximum is 86400 seconds) " |
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| 253 | read answer |
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| 254 | |
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| 255 | if [ "X${answer}" != "X" ] ; then |
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| 256 | WallTime=${answer} |
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| 257 | fi |
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| 258 | |
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| 259 | fi # if ( ! ${x_t} ) |
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| 260 | |
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[1547] | 261 | echo Wall time limit is ${WallTime} seconds |
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[1536] | 262 | |
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[1518] | 263 | elif [ X"${SYSTEM}" == "Xirene-amd" ] ; then |
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| 264 | |
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| 265 | #- set ProjectID if required |
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| 266 | if ( ! ${x_p} ) ; then |
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| 267 | print - "Wait for the next question ..." |
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| 268 | #- default ProjectID |
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| 269 | ProjectID=$( ccc_myproject | grep -i irene |grep -i rome | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u | grep -v gencmip6 | head -n 1 ) |
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| 270 | answer="" |
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| 271 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | grep -i irene | grep -i rome | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u ) ) or other xxxcmip6 : $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ; echo ) " |
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| 272 | read answer |
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| 273 | |
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| 274 | if [ "X${answer}" != "X" ] ; then |
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| 275 | ProjectID=${answer} |
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| 276 | fi |
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| 277 | |
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| 278 | fi # if ( ! ${x_p} ) |
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| 279 | |
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| 280 | echo ProjectID is ${ProjectID} at Irene-amd |
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| 281 | |
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| 282 | # set ProjectNode if required |
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| 283 | if ( ! ${x_q} ) ; then |
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| 284 | #- default ProjectNode |
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[1529] | 285 | ProjectNode="rome" |
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[1518] | 286 | #- is xlarge possible for ${ProjectID} ? |
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| 287 | echo $(ccc_myproject | grep -i irene | grep -i xlarge | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u) $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ) | grep ${ProjectID} >/dev/null 2>&1 || ProjectNode="rome" |
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| 288 | |
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| 289 | if [ "X${ProjectNode}" == "Xxlarge" ] ; then |
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| 290 | answerOK=false |
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| 291 | |
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| 292 | while ( ! ${answerOK} ) ; do |
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| 293 | answer="" |
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[1529] | 294 | print - "Hit Enter or give TYPE OF NODE required for post-processing (default is \"${ProjectNode}\"), possible types of nodes are \"rome\" : " |
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[1518] | 295 | read answer |
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[1529] | 296 | [ "X${answer}" == "X" ] || [ "X${answer}" == "Xrome" ] && answerOK=true |
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[1518] | 297 | done |
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| 298 | |
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| 299 | if [ "X${answer}" != "X" ] ; then |
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| 300 | ProjectNode=${answer} |
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| 301 | fi |
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| 302 | |
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| 303 | else |
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| 304 | print - "PostProcessing will be done on ${ProjectNode}" |
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| 305 | fi |
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| 306 | |
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| 307 | fi # if ( ! ${x_q} ) |
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| 308 | echo ProjectNode for post-processing is ${ProjectNode} at Irene-amd |
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| 309 | |
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| 310 | #- ProjectNode is known (option or answer) set ProjectCoreMax |
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| 311 | [ "${ProjectNode}" = "xlarge" ] && ProjectCoreMax="112" || ProjectCoreMax="48" |
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| 312 | #- ProjectCoreMax is 48 for standard and 112 for xlarge |
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| 313 | |
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| 314 | if ( ! ${x_c} ) ; then |
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| 315 | #- ProjectNode is known (option or answer), set ProjectCore default |
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| 316 | [ "${ProjectNode}" = "xlarge" ] && ProjectCore="8" || ProjectCore="4" |
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| 317 | |
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| 318 | # let check minimum/maximum value 1/${ProjectCoreMax} |
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| 319 | |
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| 320 | answerOK=false |
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| 321 | |
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| 322 | while ( ! ${answerOK} ) ; do |
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| 323 | answer="" |
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| 324 | print - "possible numbers of cores are \"1\" to \"${ProjectCoreMax}\" for ${ProjectNode} : " |
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| 325 | print - "Hit Enter or give NUMBER OF CORES required for post-processing (default is \"${ProjectCore}\")" |
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| 326 | read answer |
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| 327 | [ "X${answer}" == "X" ] || [ ${answer} -ge 1 -a ${answer} -le ${ProjectCoreMax} ] && answerOK=true |
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| 328 | done |
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| 329 | |
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| 330 | if [ "X${answer}" != "X" ] ; then |
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| 331 | ProjectCore=${answer} |
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| 332 | fi |
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| 333 | |
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| 334 | fi # if ( ! ${x_c} ) |
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| 335 | |
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| 336 | echo ProjectCore for post-processing is ${ProjectCore} |
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| 337 | #- ProjectCore is set (option or answer) |
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| 338 | |
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[1536] | 339 | #- set WallTime if required |
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| 340 | if ( ! ${x_t} ) ; then |
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| 341 | #- default WallTime 1800 s |
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| 342 | WallTime=1800 |
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| 343 | answer="" |
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| 344 | print - "Hit Enter or give required wall time in seconds for computing job (default is \"${WallTime}\" seconds, maximum is 86400 seconds) " |
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| 345 | read answer |
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| 346 | |
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| 347 | if [ "X${answer}" != "X" ] ; then |
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| 348 | WallTime=${answer} |
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| 349 | fi |
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| 350 | |
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| 351 | fi # if ( ! ${x_t} ) |
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| 352 | |
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[1547] | 353 | echo Wall time limit is ${WallTime} seconds |
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[1536] | 354 | |
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[1490] | 355 | elif [ X"${SYSTEM}" == "Xjeanzay" ] ; then |
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| 356 | |
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| 357 | #- set ProjectID if required |
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| 358 | if ( ! ${x_p} ) ; then |
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| 359 | print - "Wait for the next question ..." |
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| 360 | #- default ProjectID |
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| 361 | ProjectID=$( echo $IDRPROJ ) |
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| 362 | answer="" |
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| 363 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are: $( groups ; echo ) " |
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| 364 | read answer |
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| 365 | |
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| 366 | if [ "X${answer}" != "X" ] ; then |
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| 367 | ProjectID=${answer} |
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| 368 | fi |
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| 369 | |
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| 370 | fi # if ( ! ${x_p} ) |
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| 371 | |
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| 372 | echo ProjectID is ${ProjectID} at Jean-Zay |
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| 373 | |
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[1536] | 374 | #- set WallTime if required |
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| 375 | if ( ! ${x_t} ) ; then |
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| 376 | #- default WallTime 30 minutes |
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| 377 | WallTime=30 |
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| 378 | answer="" |
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| 379 | print - "Hit Enter or give required wall time in minutes for computing job (default is \"${WallTime}\" minutes, maximum is 1200 minutes) " |
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| 380 | read answer |
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| 381 | |
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| 382 | if [ "X${answer}" != "X" ] ; then |
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| 383 | WallTime=${answer} |
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| 384 | fi |
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| 385 | |
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| 386 | fi # if ( ! ${x_t} ) |
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| 387 | |
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| 388 | echo Wall time limit is ${WallTime} minutes |
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| 389 | |
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[1305] | 390 | elif [ X"${SYSTEM}" == "Xada" ] ; then |
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[1316] | 391 | if ( ! ${x_m} ) ; then |
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| 392 | MPIEnvironment=IBM |
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| 393 | # Intel MPI Environment. |
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| 394 | answerOK=false |
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| 395 | while ( ! ${answerOK} ) ; do |
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| 396 | answer="" |
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| 397 | print - "Hit Enter or give MPI Environement (default is ${MPIEnvironment}), possible MPI environments are IBM (MPI IBM) and Intel (MPI Intel) :" |
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| 398 | read answer |
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| 399 | [ "X${answer}" == "X" ] || [ "X${answer}" == "XIBM" ] || [ "X${answer}" == "XIntel" ] && answerOK=true |
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| 400 | done |
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[1305] | 401 | |
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[1316] | 402 | if [ "X${answer}" != "X" ] ; then |
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| 403 | MPIEnvironment=${answer} |
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| 404 | fi |
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| 405 | fi # if ( ! ${x_pm} ) |
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| 406 | echo MPIEnvironment is ${MPIEnvironment} |
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[1470] | 407 | |
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[1568] | 408 | elif [ X"${SYSTEM}" == "Xobelix" ] || [ X"${SYSTEM}" == "Xifort_CICLAD" ] ; then |
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[1391] | 409 | # obelix, ciclad, climserv |
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| 410 | echo "" |
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| 411 | echo "You need to check and maybe adapt headers in the main job especially the line: " |
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| 412 | echo " #PBS -l nodes=x:ppn=y " |
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| 413 | echo "where x is the number of nodes, y the number of cores per node and x*y is the total number of cores for the job. " |
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| 414 | echo "y must not be bigger than the maximum numer of cores per node on the machine (often 8 or 16)." |
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[1472] | 415 | fi # if [ X"${SYSTEM}" == "Xirene" ] |
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[1164] | 416 | |
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| 417 | #- |
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| 418 | # Define the pattern string to substitute |
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| 419 | #- |
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[1522] | 420 | W_P='#-Q- '; W_W=${W_P}${SYSTEM}' '; |
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[1164] | 421 | #- |
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| 422 | # Extract list of 'config.card' files |
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| 423 | # and create jobs with AA_job |
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| 424 | #- |
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| 425 | F_CFG='config.card'; |
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| 426 | F_CFG_ENS='ensemble.card'; |
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| 427 | SUBMIT_DIR_ENS=$( pwd ) |
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[1271] | 428 | for i in $( pwd )/config.card |
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[1164] | 429 | do |
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[1271] | 430 | if [ ! -f $i ] ; then |
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| 431 | echo "" |
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| 432 | echo "################## WARNING ##################" |
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| 433 | echo "No config.card available in current directory" |
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| 434 | echo "" |
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| 435 | continue |
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| 436 | fi |
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| 437 | |
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| 438 | |
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[1164] | 439 | j=$(cd ${i%/*};/bin/pwd;) |
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| 440 | n_f=${F_RCI##*/}; |
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| 441 | |
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| 442 | if [ ! X$( echo ${j} | grep EXPERIMENTS ) = X ] ; then |
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| 443 | # Do not treat config.card if it is in sub-directory of EXPERIMENTS |
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| 444 | # Continue to next config.card |
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| 445 | continue |
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| 446 | else |
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| 447 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
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| 448 | fi |
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| 449 | |
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| 450 | # Find out if new structure and set .resol filename |
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| 451 | if [ -d ${j}/EXPERIMENTS ] && [ -d ${j}/GENERAL ] ; then |
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| 452 | # New Structure |
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| 453 | [[ ${x_v} = 'verbose' ]] && echo "This is new configuration structure" |
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| 454 | new_struct=yes |
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| 455 | resolfile=$j/.resol |
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| 456 | else |
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| 457 | # Old Structure |
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| 458 | new_struct=no |
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| 459 | resolfile=$j/../.resol |
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| 460 | fi |
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| 461 | |
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| 462 | # Get all variables declared in section UserChoices in config.card |
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| 463 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} UserChoices |
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| 464 | # Set default values |
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| 465 | config_UserChoices_ExpType="" |
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| 466 | RESOL_ATM_3D=this_is_a_test_string |
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| 467 | RESOL=this_is_another_test_string |
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[1543] | 468 | ResolAtm=this_is_a_new_another_test |
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[1164] | 469 | typeset option |
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| 470 | for option in ${config_UserChoices[*]} ; do |
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| 471 | IGCM_card_DefineVariableFromOption ${j}'/'${F_CFG} UserChoices ${option} |
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| 472 | done |
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| 473 | |
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| 474 | # Find the JobName : JobName might contain the variable RESOL_ATM_3D that will be replaced by what is in .resol file |
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| 475 | if [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL_ATM_3D} ) = X ] ; then |
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| 476 | TRUERESOL=$( tail -1 $resolfile | awk "-F=" '{print $2}' ) |
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| 477 | echo TRUERESOL = $TRUERESOL |
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| 478 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL_ATM_3D}/${TRUERESOL}/" ) |
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| 479 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
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| 480 | elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL} ) = X ] ; then |
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| 481 | TRUERESOL=$( head -1 $resolfile ) |
---|
| 482 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL}/${TRUERESOL}/" ) |
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| 483 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
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[1543] | 484 | elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${ResolAtm} ) = X ] ; then |
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| 485 | TRUERESOL=${config_UserChoices_ResolAtm} |
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| 486 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${ResolAtm}/${TRUERESOL}/" ) |
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| 487 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
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[1164] | 488 | else |
---|
| 489 | JobName=${config_UserChoices_JobName} |
---|
| 490 | fi |
---|
| 491 | |
---|
| 492 | # Check JobName validity : only alphanumerical characters, "-" and "." are authorized |
---|
| 493 | ins_job_Check_JobName |
---|
| 494 | RetCode=$? |
---|
| 495 | [[ $RetCode -gt 0 ]] && continue |
---|
| 496 | |
---|
| 497 | [[ ${x_v} = 'verbose' ]] && echo "JobName=${JobName}" |
---|
| 498 | |
---|
| 499 | # Add specific treatment for new type of directory structure |
---|
| 500 | if [ ${new_struct} == yes ] ; then |
---|
| 501 | |
---|
| 502 | if [ "X${config_UserChoices_ExpType}" = X ] ; then |
---|
| 503 | echo "\nERROR in ${j}/config.card" |
---|
| 504 | echo "ins_job stops here" |
---|
| 505 | echo "=> The variable ExpType must be added in config.card in section UserChoices" |
---|
[1238] | 506 | echo "=> ExpType gives the directory for the .card configuration files for the wanted experiement. For exemple ExpType=IPSLCM5/historical" |
---|
[1164] | 507 | exit 4 |
---|
| 508 | else |
---|
| 509 | [[ ${x_v} = 'verbose' ]] && echo "ExpType= ${config_UserChoices_ExpType}" |
---|
| 510 | fi |
---|
| 511 | |
---|
| 512 | if [ -d ${j}/${JobName} ] ; then |
---|
[1359] | 513 | echo "Directory ${j}/${JobName} exists already. It will not be overwritten." |
---|
| 514 | echo "Remove the existing directory or change JobName before relaunching ins_job." |
---|
[1489] | 515 | #continue |
---|
| 516 | exit |
---|
[1164] | 517 | fi |
---|
| 518 | echo "=> Submit directory ${JobName} will be created with cards from EXPERIMENTS/${config_UserChoices_ExpType}" |
---|
| 519 | cp -r ${j}/EXPERIMENTS/${config_UserChoices_ExpType} ${j}/${JobName} |
---|
| 520 | cp -r ${j}/GENERAL/* ${j}/${JobName}/. |
---|
| 521 | cp -f ${j}/${F_CFG} ${j}/${JobName}/. |
---|
| 522 | if [ -f ${F_CFG_ENS} ] ; then |
---|
| 523 | cp -f ${j}/${F_CFG_ENS} ${j}/${JobName}/. |
---|
| 524 | SUBMIT_DIR_ENS=${j}/${JobName} |
---|
| 525 | fi |
---|
| 526 | rm -f ${j}/${F_CFG} |
---|
[1489] | 527 | # rm -f ${j}/${F_CFG_ENS} |
---|
[1164] | 528 | rm -f ${j}/${F_CFG}.bak |
---|
| 529 | j=${j}/${JobName} |
---|
| 530 | [[ ${x_v} = 'verbose' ]] && echo new j=$j |
---|
| 531 | fi |
---|
| 532 | # end specific treatment for new type directory structure |
---|
| 533 | |
---|
| 534 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; } || \ |
---|
| 535 | { |
---|
| 536 | [[ ${x_v} = 'verbose' ]] && print - "\nCopying file ${F_RCI}\nin directory ${j}"; |
---|
| 537 | \cp ${F_RCI} ${j}; |
---|
| 538 | } |
---|
[1242] | 539 | |
---|
[1238] | 540 | #================================== |
---|
[1242] | 541 | # Read ListOfComponents section: |
---|
| 542 | #echo |
---|
| 543 | #IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents" |
---|
| 544 | |
---|
| 545 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} ListOfComponents |
---|
| 546 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 547 | IGCM_card_DefineArrayFromOption ${j}'/'${F_CFG} ListOfComponents ${comp} |
---|
| 548 | done |
---|
| 549 | #IGCM_debug_Print 3 ${config_ListOfComponents[*]} |
---|
| 550 | |
---|
| 551 | #================================== |
---|
[1238] | 552 | # Read Executable section: |
---|
[1242] | 553 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} Executable |
---|
[1164] | 554 | |
---|
[1238] | 555 | # Define the execution context (MPMD, SPMD, MPI/OMP ...) |
---|
[1242] | 556 | IGCM_config_ConfigureExecution ${j}'/'${F_CFG} |
---|
[1238] | 557 | |
---|
| 558 | # coreNumber : TOTAL NUMBER OF CORES |
---|
| 559 | # mpiTasks : TOTAL NUMBER OF MPI TASKS |
---|
| 560 | # openMPthreads : NUMBER OF OpenMP THREADS |
---|
| 561 | |
---|
[1164] | 562 | # File name for Job |
---|
| 563 | n_f='Job_'${JobName}; |
---|
[1401] | 564 | [[ ${x_f} = 'false' ]] && [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
---|
[1164] | 565 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
---|
| 566 | sed -e "/^${W_W} */ s///" \ |
---|
| 567 | -e "/^${W_P}/d" \ |
---|
| 568 | -e "s%::modipsl::%${F_MOD}%" \ |
---|
| 569 | -e "s/::Jobname::/${JobName}/" \ |
---|
| 570 | -e "s/::default_project::/${ProjectID}/" \ |
---|
[1536] | 571 | -e "s/::WallTime::/${WallTime}/" \ |
---|
[1164] | 572 | ${F_JOB} > ${j}'/'${n_f} |
---|
| 573 | chmod u+x ${j}'/'${n_f} |
---|
[1238] | 574 | |
---|
| 575 | # update Headers so that ressources description are accurate (MPMD/SPMD/...) |
---|
| 576 | IGCM_sys_updateHeaders ${j}'/'${n_f} |
---|
[1569] | 577 | |
---|
| 578 | n_f='Job_debug_'${JobName}; |
---|
| 579 | [[ ${x_f} = 'false' ]] && [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
---|
| 580 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
---|
| 581 | sed -e "/^${W_W} */ s///" \ |
---|
| 582 | -e "/^${W_P}/d" \ |
---|
| 583 | -e "s%::modipsl::%${F_MOD}%" \ |
---|
| 584 | -e "s/::Jobname::/${JobName}/" \ |
---|
| 585 | -e "s/::default_project::/${ProjectID}/" \ |
---|
| 586 | -e "s/::WallTime::/${WallTime}/" \ |
---|
| 587 | ${F_JOB_DEBUG} > ${libIGCM}'/'${n_f} |
---|
| 588 | chmod u+x ${libIGCM}'/'${n_f} |
---|
| 589 | |
---|
| 590 | # update Headers so that ressources description are accurate (MPMD/SPMD/...) |
---|
| 591 | IGCM_sys_updateHeaders ${libIGCM}'/'${n_f} |
---|
| 592 | |
---|
[1164] | 593 | done |
---|
[1238] | 594 | |
---|
[1164] | 595 | #- |
---|
| 596 | # Extract list of AA_* files in libIGCM |
---|
| 597 | # and create jobs (for all except AA_job) |
---|
| 598 | #- |
---|
| 599 | for i in $(find ${libIGCM} -maxdepth 1 -name "AA_*" -print) |
---|
| 600 | do |
---|
| 601 | i_f=${i##*/}; |
---|
| 602 | [[ ${i_f} = 'AA_job' ]] && { continue; } |
---|
| 603 | j=${i%/*}; n_f=${i_f#AA_}'.job'; |
---|
[1401] | 604 | [[ ${x_f} = 'false' ]] && [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
---|
[1164] | 605 | [[ ${x_v} = 'verbose' ]] && print - "\nIn directory ${j}\n${i_f} -> ${n_f}" |
---|
| 606 | sed -e "/^${W_W} */ s///" \ |
---|
| 607 | -e "s%::modipsl::%${F_MOD}%" \ |
---|
| 608 | -e "/^${W_P}/d" \ |
---|
| 609 | -e "s/::default_node::/${ProjectNode}/" \ |
---|
[1274] | 610 | -e "s/::default_core::/${ProjectCore}/" \ |
---|
[1164] | 611 | -e "s/::default_project::/${ProjectID}/" \ |
---|
[1471] | 612 | -e "s/::default_post_project::/${ProjectID}/" \ |
---|
[1164] | 613 | ${i} > ${j}'/'${n_f} |
---|
| 614 | chmod u+x ${j}'/'${n_f} |
---|
| 615 | done |
---|
| 616 | #- |
---|
[1490] | 617 | # set default_project in libIGCM_sys_irene and libIGCM_sys_jeanzay. |
---|
[1164] | 618 | #- |
---|
[1472] | 619 | if [ X"${SYSTEM}" == "Xirene" ] ; then |
---|
[1473] | 620 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_irene.ksh |
---|
[1164] | 621 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
[1518] | 622 | elif [ X"${SYSTEM}" == "Xirene-amd" ] ; then |
---|
| 623 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_irene-amd.ksh |
---|
| 624 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
[1490] | 625 | elif [ X"${SYSTEM}" == "Xjeanzay" ] ; then |
---|
| 626 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_jeanzay.ksh |
---|
| 627 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
[1164] | 628 | fi |
---|
| 629 | #- |
---|
| 630 | # Limited to hindcast/forecast and date restart Ensemble for the time being |
---|
| 631 | if [ ${x_e} = 'true' ] ; then |
---|
[1489] | 632 | if [ ! -f ${F_CFG_ENS} ] ; then |
---|
| 633 | echo "" |
---|
| 634 | echo "################## WARNING ##################" |
---|
| 635 | echo "No ensemble.card available in current directory" |
---|
| 636 | echo "" |
---|
| 637 | exit |
---|
| 638 | # continue |
---|
| 639 | fi |
---|
| 640 | |
---|
[1164] | 641 | #.. Read input data from ensemble.card .. |
---|
| 642 | SUBMIT_DIR=${SUBMIT_DIR_ENS} |
---|
[1475] | 643 | RUN_DIR="${CCCWORKDIR}/ENSEMBLE_TMP" |
---|
[1164] | 644 | # |
---|
| 645 | # Copy initial things around and define variables (hindcast/forecast case) |
---|
| 646 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 647 | IGCM_ensemble_Init |
---|
| 648 | |
---|
| 649 | if [[ ${ensemble_Ens_DATE_active} = 'y' ]] ; then |
---|
| 650 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 651 | IGCM_ensemble_DateInit |
---|
| 652 | # As it says |
---|
| 653 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 654 | IGCM_ensemble_DateNonPeriodicStarts |
---|
| 655 | fi |
---|
| 656 | |
---|
| 657 | if [[ ${ensemble_Ens_PERTURB_active} = 'y' ]] ; then |
---|
| 658 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 659 | IGCM_ensemble_CastInit |
---|
| 660 | # As it says |
---|
| 661 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 662 | IGCM_ensemble_CastPeriodicStarts |
---|
| 663 | # As it says |
---|
[1489] | 664 | #IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 665 | #IGCM_ensemble_CastMemberList |
---|
[1164] | 666 | fi |
---|
[1489] | 667 | # Done |
---|
| 668 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 669 | # Clean |
---|
| 670 | IGCM_sys_Rm -rf ${RUN_DIR} |
---|
| 671 | |
---|
[1164] | 672 | fi |
---|
| 673 | #- |
---|
| 674 | [[ ${x_v} = 'verbose' ]] && print - ""; |
---|
| 675 | #- |
---|
| 676 | # That's all folks |
---|
| 677 | #- |
---|
| 678 | |
---|
| 679 | if [ ${NbErr} -ne 0 ] ; then |
---|
| 680 | echo "################ ERROR ################" |
---|
| 681 | echo "${NbErr} invalid JobName(s) found, check the log" |
---|
| 682 | fi |
---|
| 683 | |
---|
| 684 | |
---|
| 685 | exit 0; |
---|