[1164] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Jacques Belier |
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| 5 | # Contact: |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | #--------------------------------------------------------------------- |
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| 14 | #- Installation of jobs according to environment |
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| 15 | #--------------------------------------------------------------------- |
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| 16 | function ins_job_Usage |
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| 17 | { |
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| 18 | print - " |
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| 19 | ins_job installs the jobs in the directories |
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| 20 | which contain a file config.card |
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| 21 | |
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| 22 | ins_job must be launched on the host |
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| 23 | on which the job will be submitted |
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| 24 | |
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| 25 | Usage : |
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[1274] | 26 | ${b_n} [-h] [-v] [-e] |
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[1468] | 27 | or on irene/TGCC : |
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[1471] | 28 | ${b_n} [-h] [-v] [-e] [-p project] [-q type_of_node] [-c number of cores] |
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[1305] | 29 | or on ada /IDRIS |
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| 30 | ${b_n} [-h] [-v] [-e] [-m MPI environment] |
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[1164] | 31 | Options : |
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[1274] | 32 | -h : help |
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| 33 | -v : verbose mode |
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| 34 | -e : turn on ensemble mode (hindcast/forecast or date restart) |
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[1401] | 35 | -f : ins_job is force to create jobs even if they already exist |
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[1468] | 36 | on irene only : |
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| 37 | -p project : add default project on irene |
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| 38 | -q type_of_node : add default type of nodes for postprocessing on irene skylake/xlarge |
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| 39 | -c number of cores : add default number of cores for postprocessing on irene 1-112 |
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[1305] | 40 | on ada only : |
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| 41 | - m MPI environment : add default MPI environment (Intel MPI or IBM MPI) |
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[1536] | 42 | -t wall time : change default wall time |
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[1164] | 43 | " |
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| 44 | } |
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| 45 | function ins_job_Warning |
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| 46 | { |
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| 47 | [[ ${x_v} = 'verbose' ]] && print - "\n############### WARNING ###############"; |
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| 48 | [[ ${x_v} = 'verbose' ]] && print - "File ${n_f} already exists\nin directory ${j}"; |
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| 49 | [[ ${x_v} = 'verbose' ]] && print - "You must delete this file to update !"; |
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| 50 | } |
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| 51 | |
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| 52 | function ins_job_Check_JobName |
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| 53 | { |
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| 54 | verif=${JobName##[a-zA-Z]*(?([.\-])[a-zA-Z0-9])} |
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| 55 | |
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| 56 | if [ ${#verif} -ne 0 ] ; then |
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| 57 | echo "################ ERROR ################" |
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| 58 | echo "${JobName} is invalid." |
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| 59 | echo "- JobName can only contain alphanumeric characters, \".\" and \"-\"" |
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| 60 | echo "- JobName must start with a letter" |
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| 61 | |
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| 62 | ((NbErr=NbErr+1)) |
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| 63 | |
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| 64 | Status=1 |
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| 65 | else |
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| 66 | Status=0 |
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| 67 | fi |
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| 68 | |
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| 69 | return ${Status} |
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| 70 | } |
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| 71 | |
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| 72 | #- |
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| 73 | # dirname and basename |
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| 74 | #- |
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| 75 | d_n=$(dirname ${0}); b_n=$(basename ${0}); |
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| 76 | #- |
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| 77 | # Retrieving and validation of the options |
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| 78 | #- |
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| 79 | x_v='silencious'; |
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| 80 | x_e=false; |
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[1401] | 81 | x_f=false; |
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[1164] | 82 | x_p=false; |
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[1468] | 83 | x_q=false; |
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[1274] | 84 | x_c=false; |
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[1305] | 85 | x_m=false; |
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[1536] | 86 | x_t=false; |
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| 87 | while getopts :hvefc:p:m:q:s:t: V ; do |
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[1164] | 88 | case $V in |
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| 89 | (h) ins_job_Usage; exit 0;; |
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| 90 | (v) x_v='verbose';; |
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| 91 | (e) x_e=true;; |
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[1401] | 92 | (f) x_f=true;; |
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[1164] | 93 | (p) x_p=true |
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| 94 | ProjectID=${OPTARG} ;; |
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[1468] | 95 | (q) x_q=true |
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| 96 | ProjectNode=${OPTARG} ;; |
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[1274] | 97 | (c) x_c=true |
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| 98 | ProjectCore=${OPTARG} ;; |
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[1305] | 99 | (m) x_m=true |
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| 100 | MPIEnvironment=${OPTARG} ;; |
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[1536] | 101 | (t) x_t=true |
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| 102 | WallTime=${OPTARG} ;; |
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[1164] | 103 | (:) echo ${b_n}" : -"${OPTARG}" option : missing value" 1>&2; |
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| 104 | exit 2;; |
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| 105 | (\?) echo ${b_n}" : -"${OPTARG}" option : not supported" 1>&2; |
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| 106 | exit 2;; |
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| 107 | esac |
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| 108 | done |
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| 109 | [ ${x_v} = 'silencious' ] && export DEBUG_sys=false |
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| 110 | shift $(($OPTIND-1)); |
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| 111 | #- |
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| 112 | # Define working files |
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| 113 | #- |
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| 114 | F_MOD=$(cd ${d_n}'/..';/bin/pwd;) |
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| 115 | # [[ ${F_MOD##*/} != 'modipsl' ]] && \ |
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| 116 | # { print - "directory 'modipsl' unreachable"; exit 3; } |
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| 117 | W_W=${d_n}'/../libIGCM' |
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| 118 | [[ ! -d ${W_W} ]] && { print - "${W_W} unreachable"; exit 3; } |
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| 119 | libIGCM=$(cd ${W_W};/bin/pwd;) |
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| 120 | F_JOB=${libIGCM}'/AA_job'; |
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| 121 | [[ ! -f ${F_JOB} ]] && { print - "${F_JOB} unreachable"; exit 3; } |
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| 122 | F_RCI=${libIGCM}'/run.card.init'; |
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| 123 | [[ ! -f ${F_RCI} ]] && { print - "${F_RCI} unreachable"; exit 3; } |
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| 124 | #- |
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| 125 | # Accessing to functions (without stack) |
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| 126 | #- |
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[1249] | 127 | # No verbosity (0, 1, 2, 3) |
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| 128 | Verbosity=0 |
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| 129 | # No de debug |
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[1164] | 130 | DEBUG_debug=false |
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[1249] | 131 | # Dont move libIGCM |
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[1164] | 132 | MirrorlibIGCM=false |
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[1249] | 133 | # Behave like computing job |
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[1164] | 134 | TaskType=computing |
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[1249] | 135 | # Source libIGCM |
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[1164] | 136 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 137 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 138 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 139 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[1242] | 140 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[1164] | 141 | if [ $x_e = 'true' ] ; then |
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| 142 | . ${libIGCM}/libIGCM_ensemble/libIGCM_ensemble.ksh |
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| 143 | fi |
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| 144 | |
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[1172] | 145 | #- |
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| 146 | [[ ${x_v} = 'verbose' ]] && \ |
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| 147 | { |
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| 148 | print - ""; |
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| 149 | print - '--- Host : '${SYSTEM}; |
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| 150 | print - '--- modipsl : '${F_MOD}; |
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| 151 | print - '--- libIGCM : '${libIGCM}; |
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| 152 | print - '--- basic job : '${F_JOB}; |
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| 153 | print - '--- basic card : '${F_RCI}; |
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| 154 | } |
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| 155 | #- |
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| 156 | [[ ${x_v} = 'verbose' ]] && print - "\nInstallation of jobs for '${SYSTEM}'"; |
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| 157 | #- |
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| 158 | |
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[1164] | 159 | NbErr=0 |
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| 160 | |
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| 161 | #- |
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[1470] | 162 | # Define Project parameters to set up jobs header for Irene (TGCC) |
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| 163 | # on Irene define ProjectID and ProjectCore : option or answer |
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| 164 | # on Irene ProjectNode default projectnode set to xlarge since 17/10/2018 |
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[1164] | 165 | #- |
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[1274] | 166 | |
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[1164] | 167 | |
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[1470] | 168 | if [ X"${SYSTEM}" == "Xirene" ] ; then |
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[1322] | 169 | |
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[1470] | 170 | #- set ProjectID if required |
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[1437] | 171 | if ( ! ${x_p} ) ; then |
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[1471] | 172 | print - "Wait for the next question ..." |
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[1470] | 173 | #- default ProjectID |
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| 174 | ProjectID=$( ccc_myproject | grep -i irene |grep -i skylake | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u | grep -v gencmip6 | head -n 1 ) |
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[1437] | 175 | answer="" |
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[1470] | 176 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | grep -i irene | grep -i skylake | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u ) ) or other xxxcmip6 : $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ; echo ) " |
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[1437] | 177 | read answer |
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| 178 | |
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| 179 | if [ "X${answer}" != "X" ] ; then |
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| 180 | ProjectID=${answer} |
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| 181 | fi |
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| 182 | |
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| 183 | fi # if ( ! ${x_p} ) |
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| 184 | |
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| 185 | echo ProjectID is ${ProjectID} at Irene |
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| 186 | |
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[1465] | 187 | |
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[1470] | 188 | # set ProjectNode if required |
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[1468] | 189 | if ( ! ${x_q} ) ; then |
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[1470] | 190 | #- default ProjectNode |
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| 191 | ProjectNode="xlarge" |
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[1471] | 192 | #- is xlarge possible for ${ProjectID} ? |
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[1533] | 193 | echo $(ccc_myproject | grep -i irene | grep -i xlarge | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u) $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ) | grep ${ProjectID} >/dev/null 2>&1 || ProjectNode="xlarge" |
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[1471] | 194 | |
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| 195 | if [ "X${ProjectNode}" == "Xxlarge" ] ; then |
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| 196 | answerOK=false |
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[1468] | 197 | |
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[1471] | 198 | while ( ! ${answerOK} ) ; do |
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| 199 | answer="" |
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| 200 | print - "Hit Enter or give TYPE OF NODE required for post-processing (default is \"${ProjectNode}\"), possible types of nodes are \"skylake\" or \"xlarge\" : " |
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| 201 | read answer |
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| 202 | [ "X${answer}" == "X" ] || [ "X${answer}" == "Xskylake" ] || [ "X${answer}" == "Xxlarge" ] && answerOK=true |
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| 203 | done |
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[1468] | 204 | |
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[1471] | 205 | if [ "X${answer}" != "X" ] ; then |
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| 206 | ProjectNode=${answer} |
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| 207 | fi |
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| 208 | |
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| 209 | else |
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| 210 | print - "PostProcessing will be done on ${ProjectNode}" |
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| 211 | fi |
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[1468] | 212 | |
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| 213 | fi # if ( ! ${x_q} ) |
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[1470] | 214 | echo ProjectNode for post-processing is ${ProjectNode} at Irene |
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[1465] | 215 | |
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[1468] | 216 | #- ProjectNode is known (option or answer) set ProjectCoreMax |
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| 217 | [ "${ProjectNode}" = "xlarge" ] && ProjectCoreMax="112" || ProjectCoreMax="48" |
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| 218 | #- ProjectCoreMax is 48 for standard and 112 for xlarge |
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| 219 | |
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[1465] | 220 | if ( ! ${x_c} ) ; then |
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[1468] | 221 | #- ProjectNode is known (option or answer), set ProjectCore default |
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| 222 | [ "${ProjectNode}" = "xlarge" ] && ProjectCore="8" || ProjectCore="4" |
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[1470] | 223 | |
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| 224 | # let check minimum/maximum value 1/${ProjectCoreMax} |
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| 225 | |
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[1465] | 226 | answerOK=false |
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| 227 | |
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| 228 | while ( ! ${answerOK} ) ; do |
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| 229 | answer="" |
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[1471] | 230 | print - "possible numbers of cores are \"1\" to \"${ProjectCoreMax}\" for ${ProjectNode} : " |
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[1468] | 231 | print - "Hit Enter or give NUMBER OF CORES required for post-processing (default is \"${ProjectCore}\")" |
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[1465] | 232 | read answer |
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| 233 | [ "X${answer}" == "X" ] || [ ${answer} -ge 1 -a ${answer} -le ${ProjectCoreMax} ] && answerOK=true |
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| 234 | done |
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| 235 | |
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| 236 | if [ "X${answer}" != "X" ] ; then |
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| 237 | ProjectCore=${answer} |
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| 238 | fi |
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| 239 | |
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| 240 | fi # if ( ! ${x_c} ) |
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| 241 | |
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[1470] | 242 | echo ProjectCore for post-processing is ${ProjectCore} |
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[1465] | 243 | #- ProjectCore is set (option or answer) |
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| 244 | |
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[1536] | 245 | #- set WallTime if required |
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| 246 | if ( ! ${x_t} ) ; then |
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| 247 | #- default WallTime 1800 s |
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| 248 | WallTime=1800 |
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| 249 | answer="" |
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| 250 | print - "Hit Enter or give required wall time in seconds for computing job (default is \"${WallTime}\" seconds, maximum is 86400 seconds) " |
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| 251 | read answer |
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| 252 | |
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| 253 | if [ "X${answer}" != "X" ] ; then |
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| 254 | WallTime=${answer} |
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| 255 | fi |
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| 256 | |
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| 257 | fi # if ( ! ${x_t} ) |
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| 258 | |
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[1547] | 259 | echo Wall time limit is ${WallTime} seconds |
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[1536] | 260 | |
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[1518] | 261 | elif [ X"${SYSTEM}" == "Xirene-amd" ] ; then |
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| 262 | |
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| 263 | #- set ProjectID if required |
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| 264 | if ( ! ${x_p} ) ; then |
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| 265 | print - "Wait for the next question ..." |
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| 266 | #- default ProjectID |
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| 267 | ProjectID=$( ccc_myproject | grep -i irene |grep -i rome | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u | grep -v gencmip6 | head -n 1 ) |
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| 268 | answer="" |
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| 269 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | grep -i irene | grep -i rome | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u ) ) or other xxxcmip6 : $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ; echo ) " |
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| 270 | read answer |
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| 271 | |
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| 272 | if [ "X${answer}" != "X" ] ; then |
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| 273 | ProjectID=${answer} |
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| 274 | fi |
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| 275 | |
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| 276 | fi # if ( ! ${x_p} ) |
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| 277 | |
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| 278 | echo ProjectID is ${ProjectID} at Irene-amd |
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| 279 | |
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| 280 | # set ProjectNode if required |
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| 281 | if ( ! ${x_q} ) ; then |
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| 282 | #- default ProjectNode |
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[1529] | 283 | ProjectNode="rome" |
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[1518] | 284 | #- is xlarge possible for ${ProjectID} ? |
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| 285 | echo $(ccc_myproject | grep -i irene | grep -i xlarge | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u) $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ) | grep ${ProjectID} >/dev/null 2>&1 || ProjectNode="rome" |
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| 286 | |
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| 287 | if [ "X${ProjectNode}" == "Xxlarge" ] ; then |
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| 288 | answerOK=false |
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| 289 | |
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| 290 | while ( ! ${answerOK} ) ; do |
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| 291 | answer="" |
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[1529] | 292 | print - "Hit Enter or give TYPE OF NODE required for post-processing (default is \"${ProjectNode}\"), possible types of nodes are \"rome\" : " |
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[1518] | 293 | read answer |
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[1529] | 294 | [ "X${answer}" == "X" ] || [ "X${answer}" == "Xrome" ] && answerOK=true |
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[1518] | 295 | done |
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| 296 | |
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| 297 | if [ "X${answer}" != "X" ] ; then |
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| 298 | ProjectNode=${answer} |
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| 299 | fi |
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| 300 | |
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| 301 | else |
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| 302 | print - "PostProcessing will be done on ${ProjectNode}" |
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| 303 | fi |
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| 304 | |
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| 305 | fi # if ( ! ${x_q} ) |
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| 306 | echo ProjectNode for post-processing is ${ProjectNode} at Irene-amd |
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| 307 | |
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| 308 | #- ProjectNode is known (option or answer) set ProjectCoreMax |
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| 309 | [ "${ProjectNode}" = "xlarge" ] && ProjectCoreMax="112" || ProjectCoreMax="48" |
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| 310 | #- ProjectCoreMax is 48 for standard and 112 for xlarge |
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| 311 | |
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| 312 | if ( ! ${x_c} ) ; then |
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| 313 | #- ProjectNode is known (option or answer), set ProjectCore default |
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| 314 | [ "${ProjectNode}" = "xlarge" ] && ProjectCore="8" || ProjectCore="4" |
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| 315 | |
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| 316 | # let check minimum/maximum value 1/${ProjectCoreMax} |
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| 317 | |
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| 318 | answerOK=false |
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| 319 | |
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| 320 | while ( ! ${answerOK} ) ; do |
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| 321 | answer="" |
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| 322 | print - "possible numbers of cores are \"1\" to \"${ProjectCoreMax}\" for ${ProjectNode} : " |
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| 323 | print - "Hit Enter or give NUMBER OF CORES required for post-processing (default is \"${ProjectCore}\")" |
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| 324 | read answer |
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| 325 | [ "X${answer}" == "X" ] || [ ${answer} -ge 1 -a ${answer} -le ${ProjectCoreMax} ] && answerOK=true |
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| 326 | done |
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| 327 | |
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| 328 | if [ "X${answer}" != "X" ] ; then |
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| 329 | ProjectCore=${answer} |
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| 330 | fi |
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| 331 | |
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| 332 | fi # if ( ! ${x_c} ) |
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| 333 | |
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| 334 | echo ProjectCore for post-processing is ${ProjectCore} |
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| 335 | #- ProjectCore is set (option or answer) |
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| 336 | |
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[1536] | 337 | #- set WallTime if required |
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| 338 | if ( ! ${x_t} ) ; then |
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| 339 | #- default WallTime 1800 s |
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| 340 | WallTime=1800 |
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| 341 | answer="" |
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| 342 | print - "Hit Enter or give required wall time in seconds for computing job (default is \"${WallTime}\" seconds, maximum is 86400 seconds) " |
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| 343 | read answer |
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| 344 | |
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| 345 | if [ "X${answer}" != "X" ] ; then |
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| 346 | WallTime=${answer} |
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| 347 | fi |
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| 348 | |
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| 349 | fi # if ( ! ${x_t} ) |
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| 350 | |
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[1547] | 351 | echo Wall time limit is ${WallTime} seconds |
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[1536] | 352 | |
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[1490] | 353 | elif [ X"${SYSTEM}" == "Xjeanzay" ] ; then |
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| 354 | |
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| 355 | #- set ProjectID if required |
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| 356 | if ( ! ${x_p} ) ; then |
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| 357 | print - "Wait for the next question ..." |
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| 358 | #- default ProjectID |
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| 359 | ProjectID=$( echo $IDRPROJ ) |
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| 360 | answer="" |
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| 361 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are: $( groups ; echo ) " |
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| 362 | read answer |
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| 363 | |
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| 364 | if [ "X${answer}" != "X" ] ; then |
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| 365 | ProjectID=${answer} |
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| 366 | fi |
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| 367 | |
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| 368 | fi # if ( ! ${x_p} ) |
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| 369 | |
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| 370 | echo ProjectID is ${ProjectID} at Jean-Zay |
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| 371 | |
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[1536] | 372 | #- set WallTime if required |
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| 373 | if ( ! ${x_t} ) ; then |
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| 374 | #- default WallTime 30 minutes |
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| 375 | WallTime=30 |
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| 376 | answer="" |
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| 377 | print - "Hit Enter or give required wall time in minutes for computing job (default is \"${WallTime}\" minutes, maximum is 1200 minutes) " |
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| 378 | read answer |
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| 379 | |
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| 380 | if [ "X${answer}" != "X" ] ; then |
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| 381 | WallTime=${answer} |
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| 382 | fi |
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| 383 | |
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| 384 | fi # if ( ! ${x_t} ) |
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| 385 | |
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| 386 | echo Wall time limit is ${WallTime} minutes |
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| 387 | |
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[1305] | 388 | elif [ X"${SYSTEM}" == "Xada" ] ; then |
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[1316] | 389 | if ( ! ${x_m} ) ; then |
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| 390 | MPIEnvironment=IBM |
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| 391 | # Intel MPI Environment. |
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| 392 | answerOK=false |
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| 393 | while ( ! ${answerOK} ) ; do |
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| 394 | answer="" |
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| 395 | print - "Hit Enter or give MPI Environement (default is ${MPIEnvironment}), possible MPI environments are IBM (MPI IBM) and Intel (MPI Intel) :" |
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| 396 | read answer |
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| 397 | [ "X${answer}" == "X" ] || [ "X${answer}" == "XIBM" ] || [ "X${answer}" == "XIntel" ] && answerOK=true |
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| 398 | done |
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[1305] | 399 | |
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[1316] | 400 | if [ "X${answer}" != "X" ] ; then |
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| 401 | MPIEnvironment=${answer} |
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| 402 | fi |
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| 403 | fi # if ( ! ${x_pm} ) |
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| 404 | echo MPIEnvironment is ${MPIEnvironment} |
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[1470] | 405 | |
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[1391] | 406 | elif [ X"${SYSTEM}" == "Xlxiv8" ] || [ X"${SYSTEM}" == "Xifort_CICLAD" ] ; then |
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| 407 | # obelix, ciclad, climserv |
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| 408 | echo "" |
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| 409 | echo "You need to check and maybe adapt headers in the main job especially the line: " |
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| 410 | echo " #PBS -l nodes=x:ppn=y " |
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| 411 | echo "where x is the number of nodes, y the number of cores per node and x*y is the total number of cores for the job. " |
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| 412 | echo "y must not be bigger than the maximum numer of cores per node on the machine (often 8 or 16)." |
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[1472] | 413 | fi # if [ X"${SYSTEM}" == "Xirene" ] |
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[1164] | 414 | |
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| 415 | #- |
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| 416 | # Define the pattern string to substitute |
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| 417 | #- |
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[1522] | 418 | W_P='#-Q- '; W_W=${W_P}${SYSTEM}' '; |
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[1164] | 419 | #- |
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| 420 | # Extract list of 'config.card' files |
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| 421 | # and create jobs with AA_job |
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| 422 | #- |
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| 423 | F_CFG='config.card'; |
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| 424 | F_CFG_ENS='ensemble.card'; |
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| 425 | SUBMIT_DIR_ENS=$( pwd ) |
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[1271] | 426 | for i in $( pwd )/config.card |
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[1164] | 427 | do |
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[1271] | 428 | if [ ! -f $i ] ; then |
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| 429 | echo "" |
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| 430 | echo "################## WARNING ##################" |
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| 431 | echo "No config.card available in current directory" |
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| 432 | echo "" |
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| 433 | continue |
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| 434 | fi |
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| 435 | |
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| 436 | |
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[1164] | 437 | j=$(cd ${i%/*};/bin/pwd;) |
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| 438 | n_f=${F_RCI##*/}; |
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| 439 | |
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| 440 | if [ ! X$( echo ${j} | grep EXPERIMENTS ) = X ] ; then |
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| 441 | # Do not treat config.card if it is in sub-directory of EXPERIMENTS |
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| 442 | # Continue to next config.card |
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| 443 | continue |
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| 444 | else |
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| 445 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
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| 446 | fi |
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| 447 | |
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| 448 | # Find out if new structure and set .resol filename |
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| 449 | if [ -d ${j}/EXPERIMENTS ] && [ -d ${j}/GENERAL ] ; then |
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| 450 | # New Structure |
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| 451 | [[ ${x_v} = 'verbose' ]] && echo "This is new configuration structure" |
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| 452 | new_struct=yes |
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| 453 | resolfile=$j/.resol |
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| 454 | else |
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| 455 | # Old Structure |
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| 456 | new_struct=no |
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| 457 | resolfile=$j/../.resol |
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| 458 | fi |
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| 459 | |
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| 460 | # Get all variables declared in section UserChoices in config.card |
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| 461 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} UserChoices |
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| 462 | # Set default values |
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| 463 | config_UserChoices_ExpType="" |
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| 464 | RESOL_ATM_3D=this_is_a_test_string |
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| 465 | RESOL=this_is_another_test_string |
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[1543] | 466 | ResolAtm=this_is_a_new_another_test |
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[1164] | 467 | typeset option |
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| 468 | for option in ${config_UserChoices[*]} ; do |
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| 469 | IGCM_card_DefineVariableFromOption ${j}'/'${F_CFG} UserChoices ${option} |
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| 470 | done |
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| 471 | |
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| 472 | # Find the JobName : JobName might contain the variable RESOL_ATM_3D that will be replaced by what is in .resol file |
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| 473 | if [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL_ATM_3D} ) = X ] ; then |
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| 474 | TRUERESOL=$( tail -1 $resolfile | awk "-F=" '{print $2}' ) |
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| 475 | echo TRUERESOL = $TRUERESOL |
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| 476 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL_ATM_3D}/${TRUERESOL}/" ) |
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| 477 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
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| 478 | elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL} ) = X ] ; then |
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| 479 | TRUERESOL=$( head -1 $resolfile ) |
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| 480 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL}/${TRUERESOL}/" ) |
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| 481 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
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[1543] | 482 | elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${ResolAtm} ) = X ] ; then |
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| 483 | TRUERESOL=${config_UserChoices_ResolAtm} |
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| 484 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${ResolAtm}/${TRUERESOL}/" ) |
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| 485 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
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[1164] | 486 | else |
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| 487 | JobName=${config_UserChoices_JobName} |
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| 488 | fi |
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| 489 | |
---|
| 490 | # Check JobName validity : only alphanumerical characters, "-" and "." are authorized |
---|
| 491 | ins_job_Check_JobName |
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| 492 | RetCode=$? |
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| 493 | [[ $RetCode -gt 0 ]] && continue |
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| 494 | |
---|
| 495 | [[ ${x_v} = 'verbose' ]] && echo "JobName=${JobName}" |
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| 496 | |
---|
| 497 | # Add specific treatment for new type of directory structure |
---|
| 498 | if [ ${new_struct} == yes ] ; then |
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| 499 | |
---|
| 500 | if [ "X${config_UserChoices_ExpType}" = X ] ; then |
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| 501 | echo "\nERROR in ${j}/config.card" |
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| 502 | echo "ins_job stops here" |
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| 503 | echo "=> The variable ExpType must be added in config.card in section UserChoices" |
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[1238] | 504 | echo "=> ExpType gives the directory for the .card configuration files for the wanted experiement. For exemple ExpType=IPSLCM5/historical" |
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[1164] | 505 | exit 4 |
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| 506 | else |
---|
| 507 | [[ ${x_v} = 'verbose' ]] && echo "ExpType= ${config_UserChoices_ExpType}" |
---|
| 508 | fi |
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| 509 | |
---|
| 510 | if [ -d ${j}/${JobName} ] ; then |
---|
[1359] | 511 | echo "Directory ${j}/${JobName} exists already. It will not be overwritten." |
---|
| 512 | echo "Remove the existing directory or change JobName before relaunching ins_job." |
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[1489] | 513 | #continue |
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| 514 | exit |
---|
[1164] | 515 | fi |
---|
| 516 | echo "=> Submit directory ${JobName} will be created with cards from EXPERIMENTS/${config_UserChoices_ExpType}" |
---|
| 517 | cp -r ${j}/EXPERIMENTS/${config_UserChoices_ExpType} ${j}/${JobName} |
---|
| 518 | cp -r ${j}/GENERAL/* ${j}/${JobName}/. |
---|
| 519 | cp -f ${j}/${F_CFG} ${j}/${JobName}/. |
---|
| 520 | if [ -f ${F_CFG_ENS} ] ; then |
---|
| 521 | cp -f ${j}/${F_CFG_ENS} ${j}/${JobName}/. |
---|
| 522 | SUBMIT_DIR_ENS=${j}/${JobName} |
---|
| 523 | fi |
---|
| 524 | rm -f ${j}/${F_CFG} |
---|
[1489] | 525 | # rm -f ${j}/${F_CFG_ENS} |
---|
[1164] | 526 | rm -f ${j}/${F_CFG}.bak |
---|
| 527 | j=${j}/${JobName} |
---|
| 528 | [[ ${x_v} = 'verbose' ]] && echo new j=$j |
---|
| 529 | fi |
---|
| 530 | # end specific treatment for new type directory structure |
---|
| 531 | |
---|
| 532 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; } || \ |
---|
| 533 | { |
---|
| 534 | [[ ${x_v} = 'verbose' ]] && print - "\nCopying file ${F_RCI}\nin directory ${j}"; |
---|
| 535 | \cp ${F_RCI} ${j}; |
---|
| 536 | } |
---|
[1242] | 537 | |
---|
[1238] | 538 | #================================== |
---|
[1242] | 539 | # Read ListOfComponents section: |
---|
| 540 | #echo |
---|
| 541 | #IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents" |
---|
| 542 | |
---|
| 543 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} ListOfComponents |
---|
| 544 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 545 | IGCM_card_DefineArrayFromOption ${j}'/'${F_CFG} ListOfComponents ${comp} |
---|
| 546 | done |
---|
| 547 | #IGCM_debug_Print 3 ${config_ListOfComponents[*]} |
---|
| 548 | |
---|
| 549 | #================================== |
---|
[1238] | 550 | # Read Executable section: |
---|
[1242] | 551 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} Executable |
---|
[1164] | 552 | |
---|
[1238] | 553 | # Define the execution context (MPMD, SPMD, MPI/OMP ...) |
---|
[1242] | 554 | IGCM_config_ConfigureExecution ${j}'/'${F_CFG} |
---|
[1238] | 555 | |
---|
| 556 | # coreNumber : TOTAL NUMBER OF CORES |
---|
| 557 | # mpiTasks : TOTAL NUMBER OF MPI TASKS |
---|
| 558 | # openMPthreads : NUMBER OF OpenMP THREADS |
---|
| 559 | |
---|
[1164] | 560 | # File name for Job |
---|
| 561 | n_f='Job_'${JobName}; |
---|
[1401] | 562 | [[ ${x_f} = 'false' ]] && [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
---|
[1164] | 563 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
---|
| 564 | sed -e "/^${W_W} */ s///" \ |
---|
| 565 | -e "/^${W_P}/d" \ |
---|
| 566 | -e "s%::modipsl::%${F_MOD}%" \ |
---|
| 567 | -e "s/::Jobname::/${JobName}/" \ |
---|
| 568 | -e "s/::default_project::/${ProjectID}/" \ |
---|
[1536] | 569 | -e "s/::WallTime::/${WallTime}/" \ |
---|
[1164] | 570 | ${F_JOB} > ${j}'/'${n_f} |
---|
| 571 | chmod u+x ${j}'/'${n_f} |
---|
[1238] | 572 | |
---|
| 573 | # update Headers so that ressources description are accurate (MPMD/SPMD/...) |
---|
| 574 | IGCM_sys_updateHeaders ${j}'/'${n_f} |
---|
[1164] | 575 | done |
---|
[1238] | 576 | |
---|
[1164] | 577 | #- |
---|
| 578 | # Extract list of AA_* files in libIGCM |
---|
| 579 | # and create jobs (for all except AA_job) |
---|
| 580 | #- |
---|
| 581 | for i in $(find ${libIGCM} -maxdepth 1 -name "AA_*" -print) |
---|
| 582 | do |
---|
| 583 | i_f=${i##*/}; |
---|
| 584 | [[ ${i_f} = 'AA_job' ]] && { continue; } |
---|
| 585 | j=${i%/*}; n_f=${i_f#AA_}'.job'; |
---|
[1401] | 586 | [[ ${x_f} = 'false' ]] && [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
---|
[1164] | 587 | [[ ${x_v} = 'verbose' ]] && print - "\nIn directory ${j}\n${i_f} -> ${n_f}" |
---|
| 588 | sed -e "/^${W_W} */ s///" \ |
---|
| 589 | -e "s%::modipsl::%${F_MOD}%" \ |
---|
| 590 | -e "/^${W_P}/d" \ |
---|
| 591 | -e "s/::default_node::/${ProjectNode}/" \ |
---|
[1274] | 592 | -e "s/::default_core::/${ProjectCore}/" \ |
---|
[1164] | 593 | -e "s/::default_project::/${ProjectID}/" \ |
---|
[1471] | 594 | -e "s/::default_post_project::/${ProjectID}/" \ |
---|
[1164] | 595 | ${i} > ${j}'/'${n_f} |
---|
| 596 | chmod u+x ${j}'/'${n_f} |
---|
| 597 | done |
---|
| 598 | #- |
---|
[1490] | 599 | # set default_project in libIGCM_sys_irene and libIGCM_sys_jeanzay. |
---|
[1164] | 600 | #- |
---|
[1472] | 601 | if [ X"${SYSTEM}" == "Xirene" ] ; then |
---|
[1473] | 602 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_irene.ksh |
---|
[1164] | 603 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
[1518] | 604 | elif [ X"${SYSTEM}" == "Xirene-amd" ] ; then |
---|
| 605 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_irene-amd.ksh |
---|
| 606 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
[1490] | 607 | elif [ X"${SYSTEM}" == "Xjeanzay" ] ; then |
---|
| 608 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_jeanzay.ksh |
---|
| 609 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
[1164] | 610 | fi |
---|
| 611 | #- |
---|
| 612 | # Limited to hindcast/forecast and date restart Ensemble for the time being |
---|
| 613 | if [ ${x_e} = 'true' ] ; then |
---|
[1489] | 614 | if [ ! -f ${F_CFG_ENS} ] ; then |
---|
| 615 | echo "" |
---|
| 616 | echo "################## WARNING ##################" |
---|
| 617 | echo "No ensemble.card available in current directory" |
---|
| 618 | echo "" |
---|
| 619 | exit |
---|
| 620 | # continue |
---|
| 621 | fi |
---|
| 622 | |
---|
[1164] | 623 | #.. Read input data from ensemble.card .. |
---|
| 624 | SUBMIT_DIR=${SUBMIT_DIR_ENS} |
---|
[1475] | 625 | RUN_DIR="${CCCWORKDIR}/ENSEMBLE_TMP" |
---|
[1164] | 626 | # |
---|
| 627 | # Copy initial things around and define variables (hindcast/forecast case) |
---|
| 628 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 629 | IGCM_ensemble_Init |
---|
| 630 | |
---|
| 631 | if [[ ${ensemble_Ens_DATE_active} = 'y' ]] ; then |
---|
| 632 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 633 | IGCM_ensemble_DateInit |
---|
| 634 | # As it says |
---|
| 635 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 636 | IGCM_ensemble_DateNonPeriodicStarts |
---|
| 637 | fi |
---|
| 638 | |
---|
| 639 | if [[ ${ensemble_Ens_PERTURB_active} = 'y' ]] ; then |
---|
| 640 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 641 | IGCM_ensemble_CastInit |
---|
| 642 | # As it says |
---|
| 643 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 644 | IGCM_ensemble_CastPeriodicStarts |
---|
| 645 | # As it says |
---|
[1489] | 646 | #IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 647 | #IGCM_ensemble_CastMemberList |
---|
[1164] | 648 | fi |
---|
[1489] | 649 | # Done |
---|
| 650 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
| 651 | # Clean |
---|
| 652 | IGCM_sys_Rm -rf ${RUN_DIR} |
---|
| 653 | |
---|
[1164] | 654 | fi |
---|
| 655 | #- |
---|
| 656 | [[ ${x_v} = 'verbose' ]] && print - ""; |
---|
| 657 | #- |
---|
| 658 | # That's all folks |
---|
| 659 | #- |
---|
| 660 | |
---|
| 661 | if [ ${NbErr} -ne 0 ] ; then |
---|
| 662 | echo "################ ERROR ################" |
---|
| 663 | echo "${NbErr} invalid JobName(s) found, check the log" |
---|
| 664 | fi |
---|
| 665 | |
---|
| 666 | |
---|
| 667 | exit 0; |
---|