source: trunk/libIGCM/AA_rebuild_fromWorkdir @ 681

Last change on this file since 681 was 681, checked in by mafoipsl, 12 years ago

On curie : Computing job on -q standard ie thin nodes, post-processing jobs on -q large ie large nodes. Stop default echo of commands.
  • Property svn:keywords set to Revision Author Date
File size: 11.6 KB
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[314]1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
[622]11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
[626]14#-Q- curie #MSUB -r REBUILDWRK     # Nom du job               
[622]15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
[643]18#-Q- curie #MSUB -E '--no-requeue'
[681]19#-Q- curie #MSUB -q large
20#-Q- curie set +x
[108]21#-Q- platine #!/usr/bin/ksh
22#-Q- platine ###################
23#-Q- platine ## PLATINE   CEA ##
24#-Q- platine ###################
25#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
26#-Q- platine #BSUB -N                        # message a la fin du job
27#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
28#-Q- platine #BSUB -W 4:00                   # Limite temps
29#-Q- platine #BSUB -q post                   # Passage en queue post
[426]30#-Q- platine #BSUB -L /bin/ksh
[108]31#-Q- sx8brodie #!/bin/ksh
32#-Q- sx8brodie #######################
33#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
34#-Q- sx8brodie #######################
35#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
[504]36#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
[108]37#-Q- sx8brodie # Nom du travail LoadLeveler
38#-Q- sx8brodie # @ job_name   = REBUILDWRK
39#-Q- sx8brodie # Fichier de sortie standard du travail       
40#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
41#-Q- sx8brodie # Fichier de sortie d'erreur du travail
42#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
43#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
44#-Q- sx8brodie # @ notification = error
[387]45#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
[108]46#-Q- sx8brodie # @ queue
47#-Q- aix6 #!/bin/ksh
48#-Q- aix6 #######################
49#-Q- aix6 ##   VARGAS   IDRIS  ##
50#-Q- aix6 #######################
51#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
[504]52#-Q- aix6 # @ wall_clock_limit = 10:00:00
[108]53#-Q- aix6 # Nom du travail LoadLeveler
54#-Q- aix6 # @ job_name   = REBUILDWRK
55#-Q- aix6 # Fichier de sortie standard du travail
56#-Q- aix6 # @ output     = $(job_name).$(jobid)
57#-Q- aix6 # Fichier de sortie d'erreur du travail
58#-Q- aix6 # @ error      =  $(job_name).$(jobid)
59#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
60#-Q- aix6 # @ notification = error
[387]61#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
[108]62#-Q- aix6 # @ queue
[386]63#-Q- ulam #!/bin/ksh
64#-Q- ulam #######################
65#-Q- ulam ##   VARGAS   IDRIS  ##
66#-Q- ulam #######################
67#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
[500]68#-Q- ulam # @ wall_clock_limit = 10:00:00
[386]69#-Q- ulam # Nom du travail LoadLeveler
70#-Q- ulam # @ job_name   = REBUILDWRK
71#-Q- ulam # Fichier de sortie standard du travail
72#-Q- ulam # @ output     = $(job_name).$(jobid)
73#-Q- ulam # Fichier de sortie d'erreur du travail
74#-Q- ulam # @ error      =  $(job_name).$(jobid)
75#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
76#-Q- ulam # @ notification = error
[387]77#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
[386]78#-Q- ulam # @ queue
[108]79#-Q- sx8mercure #!/bin/ksh
80#-Q- sx8mercure ######################
81#-Q- sx8mercure ## SX8MERCURE   CEA ##
82#-Q- sx8mercure ######################
83#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
84#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
85#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
86#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
87#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
[299]88#-Q- sx8mercure #PBS -q scalaire
[640]89#-Q- sx8mercure #PBS -r n
[172]90#-Q- sx9mercure #!/bin/ksh
91#-Q- sx9mercure ######################
[616]92#-Q- sx9mercure ## SX9MERCURE  CCRT ##
[172]93#-Q- sx9mercure ######################
[616]94#-Q- sx9mercure #PBS -N REBUILDWRK           # Nom du job
95#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
96#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
97#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
98#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
99#-Q- sx9mercure #PBS -q scalaire
[640]100#-Q- sx9mercure #PBS -r n
[222]101#-Q- titane #!/bin/ksh
102#-Q- titane ######################
[451]103#-Q- titane ## TITANE   CEA     ##
[222]104#-Q- titane ######################
105#-Q- titane #MSUB -r REBUILDWRK     # Nom du job               
[451]106#-Q- titane #MSUB -eo
[222]107#-Q- titane #MSUB -n 1              # Reservation du processus
108#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
[478]109#-Q- titane #MSUB -q mono
[643]110#-Q- titane #MSUB -E '-rn'
[281]111#-Q- lxiv8 ######################
112#-Q- lxiv8 ## OBELIX      LSCE ##
113#-Q- lxiv8 ######################
114#-Q- lxiv8 #PBS -N REBUILDWRK
115#-Q- lxiv8 #PBS -m a
116#-Q- lxiv8 #PBS -j oe
117#-Q- lxiv8 #PBS -q medium
118#-Q- lxiv8 #PBS -o REBUILDWRK.$$
119#-Q- lxiv8 #PBS -S /bin/ksh
[108]120#-Q- default #!/bin/ksh
121#-Q- default ##################
122#-Q- default ## DEFAULT HOST ##
123#-Q- default ##################
124
[373]125#**************************************************************
126# Author: Sebastien Denvil
127# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
128# $Revision::                                          $ Revision of last commit
129# $Author::                                            $ Author of last commit
130# $Date::                                              $ Date of last commit
[108]131# IPSL (2006)
132#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
[373]133#
134#**************************************************************
[108]135
136#set -eu
137#set -vx
138
139date
140
141#-Q- sx8brodie export OMP_NUM_THREADS=1
142#-Q- aix6 export OMP_NUM_THREADS=1
[386]143#-Q- ulam export OMP_NUM_THREADS=1
[108]144
145########################################################################
146
147#D- Flag to determine if this job in a standalone mode
148#D- Default : value from AA_job if any
149StandAlone=${StandAlone:=true}
150
[554]151#D- Path to libIGCM
[206]152#D- Default : value from AA_job if any
[554]153# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
154# WARNING you must check MirrorlibIGCM variable in sys library.
155# WARNING If this variable is true, you must use libIGCM_POST path instead
156# WARNING of your running libIGCM directory.
[229]157libIGCM=${libIGCM:=::modipsl::/libIGCM}
[206]158
[327]159#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
160MASTER=${MASTER:=mercure|titane|brodie|vargas}
161
[257]162#D- Do we rebuild parallel output from archive or from ${BIGDIR}
[206]163#D- Default : value from AA_job if any
[258]164RebuildFromArchive=${RebuildFromArchive:=false}
[257]165
166#D- Directory where files we need to rebuild are store
167#D- Default : value from AA_job if any
168#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
169#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
170#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
171#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
[206]172REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
173
174#D- How many directory to rebuild we have to consider
175#D- Default : value from AA_job if any
[229]176NbRebuildDir=${NbRebuildDir:=1000}
[206]177
178#D- Suffix date we will use to determine which directory to rebuild
179#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
180#D- Default : value from AA_job if any
[419]181LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
[206]182
[108]183#D- Flag to determine atlas job's output directory
184#D- Default : value from libIGCM_post.ksh if any
185POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
186
[327]187#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
188libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
189
[108]190#D- Increased verbosity (1, 2, 3)
191#D- Default : value from AA_job if any
192Verbosity=${Verbosity:=3}
193
194#D- Low level debug : to bypass lib test checks and stack construction
195#D- Default : value from AA_job if any
196DEBUG_debug=${DEBUG_debug:=false}
197
198#D- TEMPORARY Flag to determine atmospheric resolution
199#D- Default : value from atmospheric driver if any
[135]200RESOL_ATM=${RESOL_ATM:=ALL}
[108]201
202#D- TEMPORARY Flag to determine ocean resolution
203#D- Default : value from ocean driver if any
204RESOL_OCE=${RESOL_OCE:=ORCA2}
205
206#D- TEMPORARY Flag to determine ice resolution
207#D- Default : value from ice driver if any
208RESOL_ICE=${RESOL_ICE:=ORCA2}
209
[196]210#D- TEMPORARY Flag to determine biogeochemistry resolution
211#D- Default : value from ice driver if any
[178]212RESOL_MBG=${RESOL_MBG:=ORCA2}
213
[108]214#D- Flag to determine surface resolution
215#D- Default : value from surface driver if any
[213]216RESOL_SRF=ALL
[108]217
[213]218#D- Flag to determine surface resolution
219#D- Default : value from surface driver if any
220RESOL_SBG=ALL
[207]221
[108]222########################################################################
223
224. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
225      ( ${DEBUG_debug} ) && IGCM_debug_Check
226. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
227     ( ${DEBUG_debug} ) && IGCM_card_Check
228. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
229     ( ${DEBUG_debug} ) && IGCM_date_Check
230#-------
231. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
232. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
233
234########################################################################
235
236#set -vx
237
[202]238RUN_DIR=${RUN_DIR_PATH}
239IGCM_sys_MkdirWork ${RUN_DIR}
240IGCM_sys_Cd ${RUN_DIR}
[436]241
242# ------------------------------------------------------------------
243# Test if all was right before proceeding further
244# ------------------------------------------------------------------
245IGCM_debug_Verif_Exit_Post
246
[202]247#
[236]248if [ ${RebuildFromArchive} = true ] ; then
249    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
250else
251    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
252fi
[157]253#
[236]254
[108]255for directory in ${ListAllRebuildDir} ; do
256    #
[236]257    if [ ${RebuildFromArchive} = true ] ; then
258        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
259    else
260        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
261    fi
[196]262    #
[108]263    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
264
265    # --------------------------------------------------------------------
266    # Source function include in the REBUILD ksh and rebuild
267    # --------------------------------------------------------------------
268    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
269    IGCM_FlushRebuild
270    #
271    IGCM_sys_Cd ${RUN_DIR}
[147]272    # Clean Up
[328]273    # local clean up
[330]274    IGCM_sys_Rm -rf $( basename ${directory} )
[328]275    # remote clean up
[236]276    if [ ${RebuildFromArchive} = true ] ; then
277        IGCM_sys_RshArchive rm -rf ${directory}
278    else
[320]279        IGCM_sys_RshMaster rm -rf ${directory}
[236]280    fi
[108]281done
[203]282
[590]283# Clean RUN_DIR_PATH (necessary for cesium and titane only)
[203]284IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
[590]285
286date
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