1 | #-Q- cesium #!/bin/ksh |
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2 | #-Q- cesium ###################### |
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3 | #-Q- cesium ## CESIUM CEA ## |
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4 | #-Q- cesium ###################### |
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5 | #-Q- cesium #MSUB -r REBUILDARCH # Nom du job |
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6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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9 | #-Q- cesium #MSUB -E "-j o" |
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10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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11 | #-Q- platine #!/usr/bin/ksh |
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12 | #-Q- platine ################### |
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13 | #-Q- platine ## PLATINE CEA ## |
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14 | #-Q- platine ################### |
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15 | #-Q- platine #BSUB -J REBUILDARCH # Nom du job |
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16 | #-Q- platine #BSUB -N # message a la fin du job |
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17 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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18 | #-Q- platine #BSUB -W 4:00 # Limite temps |
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19 | #-Q- platine #BSUB -q post # Passage en queue post |
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20 | #-Q- platine #BSUB -L /bin/ksh |
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21 | #-Q- sx8brodie #!/bin/ksh |
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22 | #-Q- sx8brodie ####################### |
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23 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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24 | #-Q- sx8brodie ####################### |
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25 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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26 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
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27 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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28 | #-Q- sx8brodie # @ job_name = REBUILDARCH |
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29 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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30 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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31 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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32 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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33 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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34 | #-Q- sx8brodie # @ notification = error |
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35 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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36 | #-Q- sx8brodie # @ queue |
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37 | #-Q- aix6 #!/bin/ksh |
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38 | #-Q- aix6 ####################### |
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39 | #-Q- aix6 ## VARGAS IDRIS ## |
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40 | #-Q- aix6 ####################### |
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41 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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42 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
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43 | #-Q- aix6 # Nom du travail LoadLeveler |
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44 | #-Q- aix6 # @ job_name = REBUILDARCH |
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45 | #-Q- aix6 # Fichier de sortie standard du travail |
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46 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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47 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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48 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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49 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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50 | #-Q- aix6 # @ notification = error |
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51 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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52 | #-Q- aix6 # @ queue |
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53 | #-Q- ulam #!/bin/ksh |
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54 | #-Q- ulam ####################### |
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55 | #-Q- ulam ## ULAM IDRIS ## |
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56 | #-Q- ulam ####################### |
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57 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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58 | #-Q- ulam # @ wall_clock_limit = 20:00:00 |
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59 | #-Q- ulam # Nom du travail LoadLeveler |
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60 | #-Q- ulam # @ job_name = REBUILDARCH |
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61 | #-Q- ulam # Fichier de sortie standard du travail |
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62 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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63 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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64 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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65 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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66 | #-Q- ulam # @ notification = error |
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67 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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68 | #-Q- ulam # @ queue |
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69 | #-Q- sx8mercure #!/bin/ksh |
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70 | #-Q- sx8mercure ###################### |
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71 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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72 | #-Q- sx8mercure ###################### |
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73 | #-Q- sx8mercure #PBS -N REBUILDARCH # Nom du job |
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74 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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75 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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76 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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77 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 1 heures |
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78 | #-Q- sx8mercure #PBS -q scalaire |
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79 | #-Q- sx9mercure #!/bin/ksh |
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80 | #-Q- sx9mercure ###################### |
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81 | #-Q- sx9mercure ## CESIUM FOR SX9 CEA ## |
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82 | #-Q- sx9mercure ###################### |
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83 | #-Q- sx9mercure #MSUB -r REBUILDARCH # Nom du job |
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84 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
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85 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
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86 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
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87 | #-Q- sx9mercure #MSUB -E "-j o" |
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88 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
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89 | #-Q- titane #!/bin/ksh |
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90 | #-Q- titane ###################### |
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91 | #-Q- titane ## TITANE CEA ## |
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92 | #-Q- titane ###################### |
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93 | #-Q- titane #MSUB -r REBUILDARCH # Nom du job |
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94 | #-Q- titane #MSUB -eo |
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95 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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96 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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97 | #-Q- titane #MSUB -p gen2211 |
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98 | #-Q- titane #####MSUB -q mono # mono killed prematurly rebuild job |
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99 | #-Q- titane #MSUB -n 8 # workaround to reserve full node |
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100 | #-Q- lxiv8 ###################### |
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101 | #-Q- lxiv8 ## OBELIX LSCE ## |
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102 | #-Q- lxiv8 ###################### |
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103 | #-Q- lxiv8 #PBS -N REBUILDARCH |
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104 | #-Q- lxiv8 #PBS -m a |
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105 | #-Q- lxiv8 #PBS -j oe |
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106 | #-Q- lxiv8 #PBS -q medium |
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107 | #-Q- lxiv8 #PBS -o REBUILDARCH.$$ |
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108 | #-Q- lxiv8 #PBS -S /bin/ksh |
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109 | #-Q- default #!/bin/ksh |
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110 | #-Q- default ################## |
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111 | #-Q- default ## DEFAULT HOST ## |
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112 | #-Q- default ################## |
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113 | |
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114 | #************************************************************** |
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115 | # Author: Sebastien Denvil |
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116 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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117 | # $Revision:: $ Revision of last commit |
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118 | # $Author:: $ Author of last commit |
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119 | # $Date:: $ Date of last commit |
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120 | # IPSL (2006) |
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121 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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122 | # |
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123 | #************************************************************** |
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124 | |
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125 | #set -eu |
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126 | #set -vx |
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127 | |
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128 | date |
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129 | |
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130 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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131 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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132 | #-Q- ulam export OMP_NUM_THREADS=1 |
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133 | |
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134 | ######################################################################## |
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135 | |
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136 | #D- Flag to determine if this job in a standalone mode |
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137 | #D- Default : value from AA_job if any |
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138 | StandAlone=${StandAlone:=true} |
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139 | |
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140 | #D- Low level debug : to bypass lib test checks and stack construction |
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141 | #D- Default : value from AA_job if any |
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142 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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143 | # WARNING for StandAlone used : To run this script on some machine, |
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144 | # you must check MirrorlibIGCM variable in sys library. |
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145 | # If this variable is true, you must use libIGCM_POST path instead |
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146 | # of your running libIGCM directory. |
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147 | |
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148 | #-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer. |
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149 | MASTER=${MASTER:=mercure|titane|brodie|vargas} |
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150 | |
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151 | #D- Do we rebuild parallel output from archive or from ${BIGDIR} |
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152 | #D- Default : value from AA_job if any |
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153 | RebuildFromArchive=${RebuildFromArchive:=true} |
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154 | |
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155 | #D- Directory where files we need to rebuild are store |
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156 | #D- Default : value from AA_job if any |
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157 | #D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP |
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158 | #D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP |
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159 | #D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/ |
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160 | #D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW |
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161 | REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES} |
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162 | |
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163 | #D- How many directory to rebuild we have to consider |
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164 | #D- Default : value from AA_job if any |
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165 | NbRebuildDir=${NbRebuildDir:=1000} |
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166 | |
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167 | #D- Suffix date we will use to determine which directory to rebuild |
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168 | #D- We will rebuild NbRebuildDir before and including PeriodDateBegin |
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169 | #D- Default : value from AA_job if any |
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170 | LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}} |
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171 | |
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172 | #D- Flag to determine atlas job's output directory |
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173 | #D- Default : value from libIGCM_post.ksh if any |
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174 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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175 | |
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176 | #-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK. |
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177 | libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM} |
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178 | |
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179 | #D- Increased verbosity (1, 2, 3) |
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180 | #D- Default : value from AA_job if any |
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181 | Verbosity=${Verbosity:=3} |
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182 | |
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183 | #D- Low level debug : to bypass lib test checks and stack construction |
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184 | #D- Default : value from AA_job if any |
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185 | DEBUG_debug=${DEBUG_debug:=false} |
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186 | |
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187 | #D- TEMPORARY Flag to determine atmospheric resolution |
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188 | #D- Default : value from atmospheric driver if any |
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189 | RESOL_ATM=${RESOL_ATM:=ALL} |
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190 | |
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191 | #D- TEMPORARY Flag to determine ocean resolution |
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192 | #D- Default : value from ocean driver if any |
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193 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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194 | |
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195 | #D- TEMPORARY Flag to determine ice resolution |
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196 | #D- Default : value from ice driver if any |
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197 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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198 | |
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199 | #D- TEMPORARY Flag to determine biogeochemistry resolution |
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200 | #D- Default : value from ice driver if any |
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201 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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202 | |
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203 | #D- Flag to determine surface resolution |
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204 | #D- Default : value from surface driver if any |
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205 | RESOL_SRF=ALL |
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206 | |
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207 | #D- Flag to determine surface resolution |
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208 | #D- Default : value from surface driver if any |
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209 | RESOL_SBG=ALL |
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210 | |
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211 | ######################################################################## |
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212 | |
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213 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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214 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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215 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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216 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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217 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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218 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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219 | #------- |
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220 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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221 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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222 | |
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223 | ######################################################################## |
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224 | |
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225 | #set -vx |
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226 | |
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227 | RUN_DIR=${RUN_DIR_PATH} |
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228 | IGCM_sys_MkdirWork ${RUN_DIR} |
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229 | IGCM_sys_Cd ${RUN_DIR} |
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230 | |
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231 | # ------------------------------------------------------------------ |
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232 | # Test if all was right before proceeding further |
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233 | # ------------------------------------------------------------------ |
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234 | IGCM_debug_Verif_Exit_Post |
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235 | |
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236 | # |
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237 | if [ ${RebuildFromArchive} = true ] ; then |
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238 | ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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239 | else |
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240 | ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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241 | fi |
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242 | # |
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243 | |
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244 | for directory in ${ListAllRebuildDir} ; do |
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245 | # |
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246 | if [ ${RebuildFromArchive} = true ] ; then |
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247 | IGCM_sys_Get_Dir ${directory} ${RUN_DIR} |
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248 | else |
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249 | IGCM_sys_Get_Master ${directory} ${RUN_DIR} |
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250 | fi |
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251 | # |
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252 | IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} ) |
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253 | |
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254 | # -------------------------------------------------------------------- |
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255 | # Source function include in the REBUILD ksh and rebuild |
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256 | # -------------------------------------------------------------------- |
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257 | . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh |
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258 | IGCM_FlushRebuild |
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259 | # |
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260 | IGCM_sys_Cd ${RUN_DIR} |
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261 | # Clean Up |
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262 | # local clean up |
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263 | IGCM_sys_Rm -rf $( basename ${directory} ) |
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264 | # remote clean up |
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265 | if [ ${RebuildFromArchive} = true ] ; then |
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266 | IGCM_sys_RshArchive rm -rf ${directory} |
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267 | else |
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268 | IGCM_sys_Rm -rf ${directory} |
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269 | fi |
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270 | done |
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271 | |
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272 | # Clean RUN_DIR_PATH (necessary for cesium only) |
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273 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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