[314] | 1 | #-Q- cesium #!/bin/ksh |
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| 2 | #-Q- cesium ###################### |
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| 3 | #-Q- cesium ## CESIUM CEA ## |
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| 4 | #-Q- cesium ###################### |
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| 5 | #-Q- cesium #MSUB -r REBUILDARCH # Nom du job |
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| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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| 9 | #-Q- cesium #MSUB -E "-j o" |
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| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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[108] | 11 | #-Q- platine #!/usr/bin/ksh |
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| 12 | #-Q- platine ################### |
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| 13 | #-Q- platine ## PLATINE CEA ## |
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| 14 | #-Q- platine ################### |
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| 15 | #-Q- platine #BSUB -J REBUILDARCH # Nom du job |
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| 16 | #-Q- platine #BSUB -N # message a la fin du job |
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| 17 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 18 | #-Q- platine #BSUB -W 4:00 # Limite temps |
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| 19 | #-Q- platine #BSUB -q post # Passage en queue post |
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[426] | 20 | #-Q- platine #BSUB -L /bin/ksh |
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[108] | 21 | #-Q- sx8brodie #!/bin/ksh |
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| 22 | #-Q- sx8brodie ####################### |
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| 23 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 24 | #-Q- sx8brodie ####################### |
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| 25 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 26 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
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[108] | 27 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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| 28 | #-Q- sx8brodie # @ job_name = REBUILDARCH |
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| 29 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 30 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 31 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 32 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 33 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 34 | #-Q- sx8brodie # @ notification = error |
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[387] | 35 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[108] | 36 | #-Q- sx8brodie # @ queue |
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| 37 | #-Q- aix6 #!/bin/ksh |
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| 38 | #-Q- aix6 ####################### |
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| 39 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 40 | #-Q- aix6 ####################### |
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| 41 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[159] | 42 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
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[108] | 43 | #-Q- aix6 # Nom du travail LoadLeveler |
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| 44 | #-Q- aix6 # @ job_name = REBUILDARCH |
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| 45 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 46 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 47 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 48 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 49 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 50 | #-Q- aix6 # @ notification = error |
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[387] | 51 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[108] | 52 | #-Q- aix6 # @ queue |
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[386] | 53 | #-Q- ulam #!/bin/ksh |
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| 54 | #-Q- ulam ####################### |
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| 55 | #-Q- ulam ## ULAM IDRIS ## |
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| 56 | #-Q- ulam ####################### |
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| 57 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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| 58 | #-Q- ulam # @ wall_clock_limit = 20:00:00 |
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| 59 | #-Q- ulam # Nom du travail LoadLeveler |
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| 60 | #-Q- ulam # @ job_name = REBUILDARCH |
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| 61 | #-Q- ulam # Fichier de sortie standard du travail |
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| 62 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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| 63 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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| 64 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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| 65 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 66 | #-Q- ulam # @ notification = error |
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[387] | 67 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[386] | 68 | #-Q- ulam # @ queue |
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[108] | 69 | #-Q- sx8mercure #!/bin/ksh |
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| 70 | #-Q- sx8mercure ###################### |
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| 71 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 72 | #-Q- sx8mercure ###################### |
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| 73 | #-Q- sx8mercure #PBS -N REBUILDARCH # Nom du job |
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| 74 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 75 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 76 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 77 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 1 heures |
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[299] | 78 | #-Q- sx8mercure #PBS -q scalaire |
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[172] | 79 | #-Q- sx9mercure #!/bin/ksh |
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| 80 | #-Q- sx9mercure ###################### |
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[316] | 81 | #-Q- sx9mercure ## CESIUM FOR SX9 CEA ## |
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[172] | 82 | #-Q- sx9mercure ###################### |
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[316] | 83 | #-Q- sx9mercure #MSUB -r REBUILDARCH # Nom du job |
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| 84 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
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| 85 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
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| 86 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
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| 87 | #-Q- sx9mercure #MSUB -E "-j o" |
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| 88 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
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[222] | 89 | #-Q- titane #!/bin/ksh |
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| 90 | #-Q- titane ###################### |
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| 91 | #-Q- titane ## TITANE CEA ## |
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| 92 | #-Q- titane ###################### |
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| 93 | #-Q- titane #MSUB -r REBUILDARCH # Nom du job |
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| 94 | #-Q- titane #MSUB -N 1 # Reservation du noeud |
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| 95 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 96 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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| 97 | #-Q- titane #MSUB -E "-j o" |
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| 98 | #-Q- titane #MSUB -E "-S /bin/ksh" |
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| 99 | #-Q- titane ##MSUB -e nco.out # Sortie standard |
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| 100 | #-Q- titane ##MSUB -o nco.out # Sortie standard |
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[281] | 101 | #-Q- lxiv8 ###################### |
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| 102 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 103 | #-Q- lxiv8 ###################### |
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| 104 | #-Q- lxiv8 #PBS -N REBUILDARCH |
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| 105 | #-Q- lxiv8 #PBS -m a |
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| 106 | #-Q- lxiv8 #PBS -j oe |
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| 107 | #-Q- lxiv8 #PBS -q medium |
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| 108 | #-Q- lxiv8 #PBS -o REBUILDARCH.$$ |
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| 109 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[108] | 110 | #-Q- default #!/bin/ksh |
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| 111 | #-Q- default ################## |
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| 112 | #-Q- default ## DEFAULT HOST ## |
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| 113 | #-Q- default ################## |
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| 114 | |
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[373] | 115 | #************************************************************** |
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| 116 | # Author: Sebastien Denvil |
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| 117 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 118 | # $Revision:: $ Revision of last commit |
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| 119 | # $Author:: $ Author of last commit |
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| 120 | # $Date:: $ Date of last commit |
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[108] | 121 | # IPSL (2006) |
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| 122 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 123 | # |
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| 124 | #************************************************************** |
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[108] | 125 | |
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| 126 | #set -eu |
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| 127 | #set -vx |
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| 128 | |
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| 129 | date |
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| 130 | |
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| 131 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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| 132 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[386] | 133 | #-Q- ulam export OMP_NUM_THREADS=1 |
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[108] | 134 | |
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| 135 | ######################################################################## |
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| 136 | |
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| 137 | #D- Flag to determine if this job in a standalone mode |
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| 138 | #D- Default : value from AA_job if any |
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| 139 | StandAlone=${StandAlone:=true} |
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| 140 | |
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[206] | 141 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 142 | #D- Default : value from AA_job if any |
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[229] | 143 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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| 144 | # WARNING for StandAlone used : To run this script on some machine, |
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| 145 | # you must check MirrorlibIGCM variable in sys library. |
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| 146 | # If this variable is true, you must use libIGCM_POST path instead |
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| 147 | # of your running libIGCM directory. |
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[206] | 148 | |
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[327] | 149 | #-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer. |
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| 150 | MASTER=${MASTER:=mercure|titane|brodie|vargas} |
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| 151 | |
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[257] | 152 | #D- Do we rebuild parallel output from archive or from ${BIGDIR} |
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[206] | 153 | #D- Default : value from AA_job if any |
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[257] | 154 | RebuildFromArchive=${RebuildFromArchive:=true} |
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| 155 | |
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| 156 | #D- Directory where files we need to rebuild are store |
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| 157 | #D- Default : value from AA_job if any |
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| 158 | #D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP |
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| 159 | #D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP |
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| 160 | #D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/ |
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| 161 | #D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW |
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[206] | 162 | REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES} |
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| 163 | |
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| 164 | #D- How many directory to rebuild we have to consider |
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| 165 | #D- Default : value from AA_job if any |
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[229] | 166 | NbRebuildDir=${NbRebuildDir:=1000} |
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[206] | 167 | |
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| 168 | #D- Suffix date we will use to determine which directory to rebuild |
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| 169 | #D- We will rebuild NbRebuildDir before and including PeriodDateBegin |
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| 170 | #D- Default : value from AA_job if any |
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[419] | 171 | LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}} |
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[206] | 172 | |
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[108] | 173 | #D- Flag to determine atlas job's output directory |
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| 174 | #D- Default : value from libIGCM_post.ksh if any |
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| 175 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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| 176 | |
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[327] | 177 | #-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK. |
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| 178 | libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM} |
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| 179 | |
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[108] | 180 | #D- Increased verbosity (1, 2, 3) |
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| 181 | #D- Default : value from AA_job if any |
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| 182 | Verbosity=${Verbosity:=3} |
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| 183 | |
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| 184 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 185 | #D- Default : value from AA_job if any |
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| 186 | DEBUG_debug=${DEBUG_debug:=false} |
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| 187 | |
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| 188 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 189 | #D- Default : value from atmospheric driver if any |
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[135] | 190 | RESOL_ATM=${RESOL_ATM:=ALL} |
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[108] | 191 | |
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| 192 | #D- TEMPORARY Flag to determine ocean resolution |
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| 193 | #D- Default : value from ocean driver if any |
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| 194 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 195 | |
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| 196 | #D- TEMPORARY Flag to determine ice resolution |
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| 197 | #D- Default : value from ice driver if any |
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| 198 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 199 | |
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[178] | 200 | #D- TEMPORARY Flag to determine biogeochemistry resolution |
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| 201 | #D- Default : value from ice driver if any |
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| 202 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 203 | |
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[108] | 204 | #D- Flag to determine surface resolution |
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| 205 | #D- Default : value from surface driver if any |
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[213] | 206 | RESOL_SRF=ALL |
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[108] | 207 | |
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[213] | 208 | #D- Flag to determine surface resolution |
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| 209 | #D- Default : value from surface driver if any |
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| 210 | RESOL_SBG=ALL |
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[207] | 211 | |
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[108] | 212 | ######################################################################## |
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| 213 | |
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| 214 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 215 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 216 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 217 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 218 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 219 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 220 | #------- |
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| 221 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 222 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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| 223 | |
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| 224 | ######################################################################## |
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| 225 | |
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| 226 | #set -vx |
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| 227 | |
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[157] | 228 | RUN_DIR=${RUN_DIR_PATH} |
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[202] | 229 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 230 | IGCM_sys_Cd ${RUN_DIR} |
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[436] | 231 | |
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| 232 | # ------------------------------------------------------------------ |
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| 233 | # Test if all was right before proceeding further |
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| 234 | # ------------------------------------------------------------------ |
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| 235 | IGCM_debug_Verif_Exit_Post |
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| 236 | |
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[202] | 237 | # |
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[236] | 238 | if [ ${RebuildFromArchive} = true ] ; then |
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| 239 | ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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| 240 | else |
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| 241 | ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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| 242 | fi |
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[157] | 243 | # |
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[108] | 244 | |
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| 245 | for directory in ${ListAllRebuildDir} ; do |
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| 246 | # |
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[236] | 247 | if [ ${RebuildFromArchive} = true ] ; then |
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| 248 | IGCM_sys_Get_Dir ${directory} ${RUN_DIR} |
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| 249 | else |
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| 250 | IGCM_sys_Get_Master ${directory} ${RUN_DIR} |
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| 251 | fi |
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[157] | 252 | # |
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[108] | 253 | IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} ) |
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| 254 | |
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| 255 | # -------------------------------------------------------------------- |
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| 256 | # Source function include in the REBUILD ksh and rebuild |
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| 257 | # -------------------------------------------------------------------- |
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| 258 | . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh |
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| 259 | IGCM_FlushRebuild |
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| 260 | # |
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| 261 | IGCM_sys_Cd ${RUN_DIR} |
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[147] | 262 | # Clean Up |
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[328] | 263 | # local clean up |
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[330] | 264 | IGCM_sys_Rm -rf $( basename ${directory} ) |
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[328] | 265 | # remote clean up |
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[236] | 266 | if [ ${RebuildFromArchive} = true ] ; then |
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| 267 | IGCM_sys_RshArchive rm -rf ${directory} |
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| 268 | else |
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| 269 | IGCM_sys_Rm -rf ${directory} |
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| 270 | fi |
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[108] | 271 | done |
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[203] | 272 | |
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[236] | 273 | # Clean RUN_DIR_PATH (necessary for cesium only) |
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[203] | 274 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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