source: trunk/libIGCM/AA_pack_restart @ 640

Last change on this file since 640 was 640, checked in by mafoipsl, 12 years ago

Add norerun option on SX front-end. Transfer specific files ie config.card COMP ... with IGCM_sys_Get_Master and modify IGCM_sys_Get_Master to allow file transfer. tested on ulam and SX front-end.
  • Property svn:keywords set to Revision Author Date
File size: 14.9 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r PACKRESTART    # Nom du job
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r PACKRESTART    # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- platine #!/usr/bin/ksh
19#-Q- platine ###################
20#-Q- platine ## PLATINE   CEA ##
21#-Q- platine ###################
22#-Q- platine #BSUB -J PACKRESTART            # Nom du job
23#-Q- platine #BSUB -N                        # message a la fin du job
24#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
25#-Q- platine #BSUB -W 4:00                   # Limite temps
26#-Q- platine #BSUB -q post                   # Passage en queue post
27#-Q- platine #BSUB -L /bin/ksh
28#-Q- sx8brodie #!/bin/ksh
29#-Q- sx8brodie #######################
30#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
31#-Q- sx8brodie #######################
32#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
33#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
34#-Q- sx8brodie # Nom du travail LoadLeveler
35#-Q- sx8brodie # @ job_name   = PACKRESTART
36#-Q- sx8brodie # Fichier de sortie standard du travail
37#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
38#-Q- sx8brodie # Fichier de sortie d'erreur du travail
39#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
40#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
41#-Q- sx8brodie # @ notification = error
42#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
43#-Q- sx8brodie # @ queue
44#-Q- aix6 #!/bin/ksh
45#-Q- aix6 #######################
46#-Q- aix6 ##   VARGAS   IDRIS  ##
47#-Q- aix6 #######################
48#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
49#-Q- aix6 # @ wall_clock_limit = 10:00:00
50#-Q- aix6 # Nom du travail LoadLeveler
51#-Q- aix6 # @ job_name   = PACKRESTART
52#-Q- aix6 # Fichier de sortie standard du travail
53#-Q- aix6 # @ output     = $(job_name).$(jobid)
54#-Q- aix6 # Fichier de sortie d'erreur du travail
55#-Q- aix6 # @ error      =  $(job_name).$(jobid)
56#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57#-Q- aix6 # @ notification = error
58#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
59#-Q- aix6 # @ queue
60#-Q- ulam #!/bin/ksh
61#-Q- ulam #######################
62#-Q- ulam ##   VARGAS   IDRIS  ##
63#-Q- ulam #######################
64#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
65#-Q- ulam # @ wall_clock_limit = 10:00:00
66#-Q- ulam # Nom du travail LoadLeveler
67#-Q- ulam # @ job_name   = PACKRESTART
68#-Q- ulam # Fichier de sortie standard du travail
69#-Q- ulam # @ output     = $(job_name).$(jobid)
70#-Q- ulam # Fichier de sortie d'erreur du travail
71#-Q- ulam # @ error      =  $(job_name).$(jobid)
72#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
73#-Q- ulam # @ notification = error
74#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
75#-Q- ulam # @ queue
76#-Q- sx8mercure #!/bin/ksh
77#-Q- sx8mercure ######################
78#-Q- sx8mercure ## SX8MERCURE   CEA ##
79#-Q- sx8mercure ######################
80#-Q- sx8mercure #PBS -N PACKRESTART          # Nom du job
81#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
82#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
83#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
84#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
85#-Q- sx8mercure #PBS -q scalaire
86#-Q- sx8mercure #PBS -r n
87#-Q- sx9mercure #!/bin/ksh
88#-Q- sx9mercure ######################
89#-Q- sx9mercure ## SX9MERCURE  CCRT ##
90#-Q- sx9mercure ######################
91#-Q- sx9mercure #PBS -N PACKRESTART          # Nom du job
92#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
93#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
94#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
95#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
96#-Q- sx9mercure #PBS -q scalaire
97#-Q- sx9mercure #PBS -r n
98#-Q- titane #!/bin/ksh
99#-Q- titane ######################
100#-Q- titane ## TITANE   CEA     ##
101#-Q- titane ######################
102#-Q- titane #MSUB -r PACKRESTART    # Nom du job
103#-Q- titane #MSUB -eo
104#-Q- titane #MSUB -n 1              # Reservation du processus
105#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
106#-Q- titane #MSUB -q mono
107#-Q- lxiv8 ######################
108#-Q- lxiv8 ## OBELIX      LSCE ##
109#-Q- lxiv8 ######################
110#-Q- lxiv8 #PBS -N PACKRESTART
111#-Q- lxiv8 #PBS -m a
112#-Q- lxiv8 #PBS -j oe
113#-Q- lxiv8 #PBS -q medium
114#-Q- lxiv8 #PBS -o PACKRESTART.$$
115#-Q- lxiv8 #PBS -S /bin/ksh
116#-Q- default #!/bin/ksh
117#-Q- default ##################
118#-Q- default ## DEFAULT HOST ##
119#-Q- default ##################
120
121#**************************************************************
122# Author: Sebastien Denvil
123# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
124# $Revision::                                          $ Revision of last commit
125# $Author::                                            $ Author of last commit
126# $Date::                                              $ Date of last commit
127# IPSL (2006)
128#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
129#
130#**************************************************************
131
132#set -eu
133#set -vx
134
135date
136
137########################################################################
138
139#D- Flag to determine if this job in a standalone mode
140#D- Default : value from AA_job if any
141StandAlone=${StandAlone:=true}
142
143#D- Path to libIGCM
144#D- Default : value from AA_job if any
145# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
146# WARNING you must check MirrorlibIGCM variable in sys library.
147# WARNING If this variable is true, you must use libIGCM_POST path instead
148# WARNING of your running libIGCM directory.
149libIGCM=${libIGCM:=::modipsl::/libIGCM}
150
151#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
152MASTER=${MASTER:=mercure|titane|brodie|vargas}
153
154#D- Flag to determine begin date for restart pack
155#D- Default : value from AA_job if any
156DateBegin=${DateBegin:=20000101}
157
158#D- Flag to determine end date for restart pack
159#D- Default : value from AA_job if any
160DateEnd=${DateEnd:=20691231}
161
162#D- Flag to determine pack period
163#D- Default : value from AA_job if any
164PeriodPack=${PeriodPack:=10Y}
165
166#D- Uncomment to run interactively
167#D- For testing purpose, will be remove
168#SUBMIT_DIR=${PWD}
169#RUN_DIR_PATH=${SCRATCHDIR}/Pack_Test
170
171#D- Increased verbosity (1, 2, 3)
172#D- Default : value from AA_job if any
173Verbosity=${Verbosity:=3}
174
175#D- Low level debug : to bypass lib test checks and stack construction
176#D- Default : value from AA_job if any
177DEBUG_debug=${DEBUG_debug:=false}
178
179#D- Keep following comments for now. Will be remove.
180
181#on veut archiver les fichiers restart
182#Dans le cadre du demenagement ils seront renommes
183#ATM/Restart/****.nc
184#OCE/Restart/****.nc
185#...
186#sous la forme
187#RESTART/ATM_****.nc
188#RESTART/OCE_****.nc
189#Attention de bien conserver les dates d'origines
190#
191#Dans le cadre de la production nouvelle chaine
192#ils auront directement le bon nom
193#
194#On veut egalement que l'archive soit par periode de temps
195# cette periode est definie par la taille du pack donc connue
196# en entree du script (1M, 1Y, 5Y, 10Y etc...)
197#
198# $1= PATH/config_card d'une simulation avec
199# TagName/JobName/ExperimentName/SpaceName/DateBegin/DateEnd
200# $2=PeriodPack en M/m ou Y/y
201
202########################################################################
203
204. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
205( ${DEBUG_debug} ) && IGCM_debug_Check
206. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
207( ${DEBUG_debug} ) && IGCM_card_Check
208. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
209( ${DEBUG_debug} ) && IGCM_date_Check
210#-------
211. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
212. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
213
214########################################################################
215
216#set -vx
217
218RUN_DIR=${RUN_DIR_PATH}
219IGCM_sys_MkdirWork ${RUN_DIR}
220IGCM_sys_Cd ${RUN_DIR}
221
222# ------------------------------------------------------------------
223# Test if all was right before proceeding further
224# ------------------------------------------------------------------
225IGCM_debug_Verif_Exit_Post
226
227if [ ${StandAlone} = true ] ; then
228    CARD_DIR=${SUBMIT_DIR}
229else
230    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
231    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
232    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
233    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
234    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
235fi
236
237#====================================================
238# First of all
239#
240# Read config.card
241
242IGCM_card_DefineArrayFromSection     ${CARD_DIR}/config.card UserChoices
243typeset option
244for option in ${config_UserChoices[*]} ; do
245  IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
246done
247#
248echo
249IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
250IGCM_debug_PrintVariables 3 config_UserChoices_JobName
251IGCM_debug_PrintVariables 3 config_UserChoices_LongName
252IGCM_debug_PrintVariables 3 config_UserChoices_TagName
253IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
254IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
255IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
256IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
257IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
258IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
259echo
260
261#====================================================
262# Prepare environment
263#R_SAVE        : Job output storage directory
264#R_BUFR        : Job output buffered directory
265#STORE_RESTART : Where we store tar files
266
267if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
268  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
269  R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
270  R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
271else
272  R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
273  R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
274fi
275IGCM_sys_TestDirArchive ${R_SAVE}
276[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
277
278#STORE_RESTART=/ccc/store/cont003/dsm/p86denv/.../RESTART
279STORE_RESTART=${R_SAVE}/RESTART
280IGCM_sys_MkdirArchive ${STORE_RESTART}
281
282#cd ${STORE_RESTART}
283#rm -f *
284
285# Switch to script variables meaning (try to be compatible with ipsl_pack TGCC moving procedure)
286JobName=${config_UserChoices_JobName}
287echo $JobName $R_BUFR $DateBegin $DateEnd
288
289# Clear txt file lists
290rm -f ${RUN_DIR}/liste_restart_files.txt
291rm -f ${RUN_DIR}/new_liste_restart_files.txt
292rm -f ${RUN_DIR}/liste_pack_*.txt
293
294# Create sorted restart list to work with
295find ${R_BUFR}/*/Restart -name "*.*" | sort >> ${RUN_DIR}/liste_restart_files.txt
296
297# Rename restart files we will work with using symlinks
298#gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("cp --preserve " $0 " "dest_name)}' ${RUN_DIR}/liste_restart_files.txt
299gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_restart_files.txt
300
301# List renamed restart files
302find ${RUN_DIR} -maxdepth 1 -mindepth 1 -name "???_*${JobName}*" -ls | sort -k 11 > ${RUN_DIR}/new_liste_restart_files.txt
303
304# ------------------------------------------------------------------
305# Test if all was right before proceeding further
306# ------------------------------------------------------------------
307IGCM_debug_Verif_Exit_Post
308
309# Init loop
310date_begin_pack=${DateBegin}
311date_end_simulation=${DateEnd}
312number_pack=1
313
314IGCM_debug_PrintVariables 3 date_begin_pack
315IGCM_debug_PrintVariables 3 date_end_simulation
316
317# last restart of the previous period : to be deleted
318typeset date_end_previous
319date_end_previous=$( IGCM_date_AddDaysToGregorianDate ${date_begin_pack} -1 )
320
321while [ ${date_begin_pack} -le ${date_end_simulation} ] ; do
322
323  IGCM_debug_PrintVariables 3 number_pack
324
325  DaysTemp=$( IGCM_date_DaysInCurrentPeriod ${date_begin_pack} ${PeriodPack} )
326  date_end_pack=$( IGCM_date_AddDaysToGregorianDate ${date_begin_pack} $(( ${DaysTemp} - 1 )) )
327
328  for file in $( gawk '{print $11}' ${RUN_DIR}/new_liste_restart_files.txt ); do
329    extract_date_file=$( echo ${file}  | sed -e "s/.*${JobName}_//" )
330    date_file=$( echo ${extract_date_file} | sed 's/\([0-9]\{8\}\)_.*$/\1/g' )
331#   warning demenagement. delete last restart of the previous pack
332    [  ${date_file} -eq ${date_end_previous} ] && echo $( readlink ${file} ) >> ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt
333#   echo pack number ${number_pack}  ${date_file} ${date_begin_pack} ${date_end_pack}
334    if [ ${date_file} -le ${date_end_pack} ] && [ ${date_file} -ge ${date_begin_pack} ] ; then
335      echo $( basename ${file} ) >> ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
336#   warning demenagement. do not delete last restart of this pack
337      [ ${date_file} -eq ${date_end_pack} ] || echo $( readlink ${file} ) >> ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt
338#   Will not work. Need to find a better ordering.
339#   elif [ ${date_file} -ge ${date_end_pack} ] ; then
340#     break
341    fi
342  done
343
344  # Create tar files
345  IGCM_debug_Print 1 "Tar ongoing"
346  tar -cvf ${JobName}_${date_begin_pack}_${date_end_pack}_restart.tar --dereference --files-from ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
347  # Save it
348  IGCM_sys_Put_Out ${JobName}_${date_begin_pack}_${date_end_pack}_restart.tar ${STORE_RESTART}
349  # Clean it
350  IGCM_sys_Rm ${JobName}_${date_begin_pack}_${date_end_pack}_restart.tar
351  # Clean links
352  cat ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
353  # Clean files links pointed to
354  cat ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
355  # Save the list of files that has been pack (tar)
356  #mv ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt ${STORE_RESTART}
357  IGCM_debug_Print 1 "Tar and cleaning done"
358
359  (( number_pack = number_pack + 1 ))
360
361  # Add 1 day to date_end_pack to have the new date_begin_pack
362  date_begin_pack=$( IGCM_date_AddDaysToGregorianDate ${date_end_pack} 1 )
363
364done
365
366# Clean RUN_DIR_PATH (necessary for cesium and titane only)
367IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
368
369date
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