source: trunk/libIGCM/AA_monitoring @ 732

Last change on this file since 732 was 731, checked in by sdipsl, 12 years ago
  • bugfix. Need to source libIGCM_config to have access to IGCM_config_CommonConfiguration
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.7 KB
RevLine 
[314]1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r MONITORING     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
[622]11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
[626]14#-Q- curie #MSUB -r MONITORING     # Nom du job               
[622]15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
[643]18#-Q- curie #MSUB -E '--no-requeue'
[681]19#-Q- curie #MSUB -q large
[704]20#-Q- curie #MSUB -Q normal
[681]21#-Q- curie set +x
[2]22#-Q- platine #!/usr/bin/ksh
23#-Q- platine ##################
24#-Q- platine ## PLATINE   CEA ##
25#-Q- platine ##################
26#-Q- platine #BSUB -J MONITORING             # Nom du job
27#-Q- platine #BSUB -N                        # message a la fin du job
28#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
29#-Q- platine #BSUB -W 1:00                   # Limite temps
[18]30#-Q- platine #BSUB -q post              # Passage en queue post
[426]31#-Q- platine #BSUB -L /bin/ksh
[59]32#-Q- sx8brodie #!/bin/ksh
[2]33#-Q- sx8brodie #######################
34#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
35#-Q- sx8brodie #######################
[58]36#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
[504]37#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
[58]38#-Q- sx8brodie # Nom du travail LoadLeveler
[60]39#-Q- sx8brodie # @ job_name   = MONITORING
[58]40#-Q- sx8brodie # Fichier de sortie standard du travail       
41#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
42#-Q- sx8brodie # Fichier de sortie d'erreur du travail
43#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
44#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
45#-Q- sx8brodie # @ notification = error
[178]46#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ;  $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
[58]47#-Q- sx8brodie # @ queue
[68]48#-Q- aix6 #!/bin/ksh
49#-Q- aix6 #######################
50#-Q- aix6 ##   VARGAS   IDRIS  ##
51#-Q- aix6 #######################
52#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
[504]53#-Q- aix6 # @ wall_clock_limit = 1:00:00
[68]54#-Q- aix6 # Nom du travail LoadLeveler
55#-Q- aix6 # @ job_name   = MONITORING
56#-Q- aix6 # Fichier de sortie standard du travail       
57#-Q- aix6 # @ output     = $(job_name).$(jobid)
58#-Q- aix6 # Fichier de sortie d'erreur du travail
59#-Q- aix6 # @ error      =  $(job_name).$(jobid)
60#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
61#-Q- aix6 # @ notification = error
[178]62#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
[68]63#-Q- aix6 # @ queue
[386]64#-Q- ulam #!/bin/ksh
65#-Q- ulam #######################
66#-Q- ulam ##   ULAM   IDRIS  ##
67#-Q- ulam #######################
68#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
[500]69#-Q- ulam # @ wall_clock_limit = 1:00:00
[386]70#-Q- ulam # Nom du travail LoadLeveler
71#-Q- ulam # @ job_name   = MONITORING
72#-Q- ulam # Fichier de sortie standard du travail       
73#-Q- ulam # @ output     = $(job_name).$(jobid)
74#-Q- ulam # Fichier de sortie d'erreur du travail
75#-Q- ulam # @ error      =  $(job_name).$(jobid)
76#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
77#-Q- ulam # @ notification = error
78#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
79#-Q- ulam # @ queue
[2]80#-Q- sx8mercure #!/bin/ksh
81#-Q- sx8mercure ######################
82#-Q- sx8mercure ## SX8MERCURE   CEA ##
83#-Q- sx8mercure ######################
84#-Q- sx8mercure #PBS -N  MONITORING          # Nom du job
85#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
86#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
87#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
88#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
[299]89#-Q- sx8mercure #PBS -q scalaire
[640]90#-Q- sx8mercure #PBS -r n
[172]91#-Q- sx9mercure #!/bin/ksh
[616]92#-Q- sx9mercure ######################
93#-Q- sx9mercure ## SX9MERCURE  CCRT ##
94#-Q- sx9mercure ######################
95#-Q- sx9mercure #PBS -N  MONITORING          # Nom du job
96#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
97#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
98#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
99#-Q- sx9mercure #PBS -l elapstim_req=1:00:00   # Limite temps a 2 heures
100#-Q- sx9mercure #PBS -q scalaire
[640]101#-Q- sx9mercure #PBS -r n
[222]102#-Q- titane #!/bin/ksh
103#-Q- titane ######################
104#-Q- titane ## TITANE   CEA ##
105#-Q- titane ######################
106#-Q- titane #MSUB -r MONITORING     # Nom du job               
[544]107#-Q- titane #MSUB -eo
[222]108#-Q- titane #MSUB -n 1              # Reservation du processus
109#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
[544]110#-Q- titane #MSUB -q mono
[643]111#-Q- titane #MSUB -E '-rn'
[281]112#-Q- lxiv8 ######################
113#-Q- lxiv8 ## OBELIX      LSCE ##
114#-Q- lxiv8 ######################
115#-Q- lxiv8 #PBS -N MONITORING
116#-Q- lxiv8 #PBS -m a
117#-Q- lxiv8 #PBS -j oe
118#-Q- lxiv8 #PBS -q medium
119#-Q- lxiv8 #PBS -o MONITORING.$$
120#-Q- lxiv8 #PBS -S /bin/ksh
[2]121#-Q- default #!/bin/ksh
122#-Q- default ##################
123#-Q- default ## DEFAULT HOST ##
124#-Q- default ##################
125
[373]126#**************************************************************
127# Author: Sebastien Denvil
128# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
129# $Revision::                                          $ Revision of last commit
130# $Author::                                            $ Author of last commit
131# $Date::                                              $ Date of last commit
[2]132# IPSL (2006)
133#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
[373]134#
135#**************************************************************
[2]136
[108]137#set -eu
138#set -vx
139
[2]140date
141
142#-Q- sx8brodie export OMP_NUM_THREADS=1
[108]143#-Q- aix6 export OMP_NUM_THREADS=1
[386]144#-Q- ulam export OMP_NUM_THREADS=1
[2]145
[712]146#D- Task type (computing or post-processing)
147TaskType=post-processing
148
[280]149########################################################################
150
151#D- Flag to determine if this job in a standalone mode
152#D- Default : value from AA_job if any
153StandAlone=${StandAlone:=true}
154
[554]155#D- Path to libIGCM
[280]156#D- Default : value from AA_job if any
[554]157# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
158# WARNING you must check MirrorlibIGCM variable in sys library.
159# WARNING If this variable is true, you must use libIGCM_POST path instead
160# WARNING of your running libIGCM directory.
[280]161libIGCM=${libIGCM:=::modipsl::/libIGCM}
162
[334]163#D- Increased verbosity (1, 2, 3)
164#D- Default : value from AA_job if any
165Verbosity=${Verbosity:=3}
166
167#D- Low level debug : to bypass lib test checks and stack construction
168#D- Default : value from AA_job if any
169DEBUG_debug=${DEBUG_debug:=false}
170
171#D- TEMPORARY Flag to determine atmospheric resolution
172#D- Default : value from atmospheric driver if any
173RESOL_ATM=${RESOL_ATM:=ALL}
174
175#D- Flag to determine surface resolution
176#D- Default : value from surface driver if any
177RESOL_SRF=${RESOL_SRF:=ALL}
178
179#D- Flag to determine surface resolution
180#D- Default : value from surface driver if any
181RESOL_SBG=${RESOL_SBG:=ALL}
182
183#D- TEMPORARY Flag to determine ocean resolution
184#D- Default : value from ocean driver if any
185RESOL_OCE=${RESOL_OCE:=ORCA2}
186
187#D- TEMPORARY Flag to determine ice resolution
188#D- Default : value from ice driver if any
189RESOL_ICE=${RESOL_ICE:=ORCA2}
190
191#D- TEMPORARY Flag to determine marine biogeochemistry resolution
192#D- Default : value from ice driver if any
193RESOL_MBG=${RESOL_MBG:=ORCA2}
194
[2]195######################################################################
196
[108]197. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
198      ( ${DEBUG_debug} ) && IGCM_debug_Check
199. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
200     ( ${DEBUG_debug} ) && IGCM_card_Check
201. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
202     ( ${DEBUG_debug} ) && IGCM_date_Check
203#-------
204. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
[731]205. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
[2]206
207######################################################################
208
209#set -vx
210
211#===========================================
[36]212RUN_DIR=${RUN_DIR_PATH}
[34]213IGCM_sys_MkdirWork ${RUN_DIR}
214IGCM_sys_Cd ${RUN_DIR}
215
[436]216# ------------------------------------------------------------------
217# Test if all was right before proceeding further
218# ------------------------------------------------------------------
219IGCM_debug_Verif_Exit_Post
220
[2]221if [ ${StandAlone} = true ] ; then
222    CARD_DIR=${SUBMIT_DIR}
223else
[647]224    CARD_DIR=${RUN_DIR}
[640]225    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
226    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
227    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
228    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
[2]229fi
230
[727]231#==================================
[2]232# First of all
233#
[727]234# Read libIGCM compatibility version in config.card
235# Read UserChoices section
236# Read Ensemble section
237# Read Post section
238# Define all netcdf output directories
239#==================================
240IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
[658]241
[263]242#==================================
[727]243# Read ListOfComponents section:
244IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents
[591]245
[727]246# Create R_FIGR that has been defined by IGCM_config_CommonConfiguration
[591]247IGCM_sys_MkdirArchive ${R_FIGR}
[102]248#
[591]249IGCM_sys_TestDirArchive ${R_FIGR}/MONITORING
[102]250if [ $? = 0 ] ; then
251    IGCM_debug_Print 1 "Get MONITORING directory from archive"
[591]252    IGCM_sys_Get_Dir ${R_FIGR}/MONITORING ${RUN_DIR}
[102]253else
254    IGCM_debug_Print 1 "MONITORING first pass. Nothing has been done before"
255fi
[2]256# --------------------------------------------
257# Insert your commands between III...III lines
258# and precise produced directories to save
259# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
260
261for comp in ${config_ListOfComponents[*]} ; do
[253]262    IGCM_debug_Print 1 "################## Component: ${comp} ######################"
[2]263    liste_file_monitoring=""
264    IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp}
265    eval compname=\${config_ListOfComponents_${comp}[0]}                > /dev/null 2>&1
[181]266
267    PATH_monitoring_file=""
[2]268    eval monitoring_file=monitoring01_${compname}_\${RESOL_${comp}}.cfg > /dev/null 2>&1
[251]269    if [[ -d ${CARD_DIR}/POST && -f ${CARD_DIR}/POST/monitoring01_${compname}.cfg ]] ; then
[252]270        PATH_monitoring_file=${CARD_DIR}/POST/monitoring01_${compname}.cfg
[181]271    elif [ -f ${FER_ATLAS}/${monitoring_file} ] ; then
272        PATH_monitoring_file=${FER_ATLAS}/${monitoring_file}
273    else
[251]274        IGCM_debug_Print 1 "No monitoring file found for this component. Was expecting ${monitoring_file}"
275        IGCM_debug_Print 1 "Step to next component"
276        continue
[181]277    fi
[2]278    #
[181]279    if [ X${PATH_monitoring_file} != X"" ] ; then
[250]280        IGCM_debug_Print 1 "Monitoring file used : ${PATH_monitoring_file}"
[134]281        IGCM_debug_Print 1 "Determine which files we need."
[181]282        . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO
283        liste_file_monitoring=$( . monitoring01 -q -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO )
[102]284    fi
[2]285    #
286    if [ ! "X${liste_file_monitoring}" = X ] ; then
[35]287        IGCM_sys_Get /l liste_file_monitoring ${RUN_DIR}
[250]288        IGCM_debug_Print 1 "monitoring01 -c ${CARD_DIR} -p ${comp} --time -t \"${config_UserChoices_JobName} monitoring\" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} ."
289        IGCM_debug_Print 1 "monitoring01 starts ................................................."
[181]290        monitoring01 -c ${CARD_DIR} -p ${comp} --time -t "${config_UserChoices_JobName} monitoring" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} .
[102]291    else
292        IGCM_debug_Print 1 "No time series detected by this command :"
[181]293        IGCM_debug_Print 1 "monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO"
294        . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO
[2]295    fi
296    #
297done
298
299# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
300
301# Save files
[587]302IGCM_sys_Put_Dir MONITORING ${R_FIGR}
[2]303
304# Dods copy
305IGCM_sys_Put_Dods MONITORING
[203]306
[590]307# Clean RUN_DIR_PATH (necessary for cesium and titane only)
[203]308IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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