source: trunk/libIGCM/AA_monitoring @ 647

Last change on this file since 647 was 647, checked in by aclsce, 12 years ago

Modified CARD_DIR variable to take into account modifications about the use of Get_Master function to get files (instead of directory).
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 13.4 KB
RevLine 
[314]1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r MONITORING     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
[622]11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
[626]14#-Q- curie #MSUB -r MONITORING     # Nom du job               
[622]15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
[643]18#-Q- curie #MSUB -E '--no-requeue'
[2]19#-Q- platine #!/usr/bin/ksh
20#-Q- platine ##################
21#-Q- platine ## PLATINE   CEA ##
22#-Q- platine ##################
23#-Q- platine #BSUB -J MONITORING             # Nom du job
24#-Q- platine #BSUB -N                        # message a la fin du job
25#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
26#-Q- platine #BSUB -W 1:00                   # Limite temps
[18]27#-Q- platine #BSUB -q post              # Passage en queue post
[426]28#-Q- platine #BSUB -L /bin/ksh
[59]29#-Q- sx8brodie #!/bin/ksh
[2]30#-Q- sx8brodie #######################
31#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
32#-Q- sx8brodie #######################
[58]33#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
[504]34#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
[58]35#-Q- sx8brodie # Nom du travail LoadLeveler
[60]36#-Q- sx8brodie # @ job_name   = MONITORING
[58]37#-Q- sx8brodie # Fichier de sortie standard du travail       
38#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
39#-Q- sx8brodie # Fichier de sortie d'erreur du travail
40#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
41#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
42#-Q- sx8brodie # @ notification = error
[178]43#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ;  $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
[58]44#-Q- sx8brodie # @ queue
[68]45#-Q- aix6 #!/bin/ksh
46#-Q- aix6 #######################
47#-Q- aix6 ##   VARGAS   IDRIS  ##
48#-Q- aix6 #######################
49#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
[504]50#-Q- aix6 # @ wall_clock_limit = 1:00:00
[68]51#-Q- aix6 # Nom du travail LoadLeveler
52#-Q- aix6 # @ job_name   = MONITORING
53#-Q- aix6 # Fichier de sortie standard du travail       
54#-Q- aix6 # @ output     = $(job_name).$(jobid)
55#-Q- aix6 # Fichier de sortie d'erreur du travail
56#-Q- aix6 # @ error      =  $(job_name).$(jobid)
57#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
58#-Q- aix6 # @ notification = error
[178]59#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
[68]60#-Q- aix6 # @ queue
[386]61#-Q- ulam #!/bin/ksh
62#-Q- ulam #######################
63#-Q- ulam ##   ULAM   IDRIS  ##
64#-Q- ulam #######################
65#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
[500]66#-Q- ulam # @ wall_clock_limit = 1:00:00
[386]67#-Q- ulam # Nom du travail LoadLeveler
68#-Q- ulam # @ job_name   = MONITORING
69#-Q- ulam # Fichier de sortie standard du travail       
70#-Q- ulam # @ output     = $(job_name).$(jobid)
71#-Q- ulam # Fichier de sortie d'erreur du travail
72#-Q- ulam # @ error      =  $(job_name).$(jobid)
73#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
74#-Q- ulam # @ notification = error
75#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
76#-Q- ulam # @ queue
[2]77#-Q- sx8mercure #!/bin/ksh
78#-Q- sx8mercure ######################
79#-Q- sx8mercure ## SX8MERCURE   CEA ##
80#-Q- sx8mercure ######################
81#-Q- sx8mercure #PBS -N  MONITORING          # Nom du job
82#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
83#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
84#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
85#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
[299]86#-Q- sx8mercure #PBS -q scalaire
[640]87#-Q- sx8mercure #PBS -r n
[172]88#-Q- sx9mercure #!/bin/ksh
[616]89#-Q- sx9mercure ######################
90#-Q- sx9mercure ## SX9MERCURE  CCRT ##
91#-Q- sx9mercure ######################
92#-Q- sx9mercure #PBS -N  MONITORING          # Nom du job
93#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
94#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
95#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
96#-Q- sx9mercure #PBS -l elapstim_req=1:00:00   # Limite temps a 2 heures
97#-Q- sx9mercure #PBS -q scalaire
[640]98#-Q- sx9mercure #PBS -r n
[222]99#-Q- titane #!/bin/ksh
100#-Q- titane ######################
101#-Q- titane ## TITANE   CEA ##
102#-Q- titane ######################
103#-Q- titane #MSUB -r MONITORING     # Nom du job               
[544]104#-Q- titane #MSUB -eo
[222]105#-Q- titane #MSUB -n 1              # Reservation du processus
106#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
[544]107#-Q- titane #MSUB -q mono
[643]108#-Q- titane #MSUB -E '-rn'
[281]109#-Q- lxiv8 ######################
110#-Q- lxiv8 ## OBELIX      LSCE ##
111#-Q- lxiv8 ######################
112#-Q- lxiv8 #PBS -N MONITORING
113#-Q- lxiv8 #PBS -m a
114#-Q- lxiv8 #PBS -j oe
115#-Q- lxiv8 #PBS -q medium
116#-Q- lxiv8 #PBS -o MONITORING.$$
117#-Q- lxiv8 #PBS -S /bin/ksh
[2]118#-Q- default #!/bin/ksh
119#-Q- default ##################
120#-Q- default ## DEFAULT HOST ##
121#-Q- default ##################
122
[373]123#**************************************************************
124# Author: Sebastien Denvil
125# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
126# $Revision::                                          $ Revision of last commit
127# $Author::                                            $ Author of last commit
128# $Date::                                              $ Date of last commit
[2]129# IPSL (2006)
130#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
[373]131#
132#**************************************************************
[2]133
[108]134#set -eu
135#set -vx
136
[2]137date
138
139#-Q- sx8brodie export OMP_NUM_THREADS=1
[108]140#-Q- aix6 export OMP_NUM_THREADS=1
[386]141#-Q- ulam export OMP_NUM_THREADS=1
[2]142
[280]143########################################################################
144
145#D- Flag to determine if this job in a standalone mode
146#D- Default : value from AA_job if any
147StandAlone=${StandAlone:=true}
148
[554]149#D- Path to libIGCM
[280]150#D- Default : value from AA_job if any
[554]151# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
152# WARNING you must check MirrorlibIGCM variable in sys library.
153# WARNING If this variable is true, you must use libIGCM_POST path instead
154# WARNING of your running libIGCM directory.
[280]155libIGCM=${libIGCM:=::modipsl::/libIGCM}
156
[334]157#D- Increased verbosity (1, 2, 3)
158#D- Default : value from AA_job if any
159Verbosity=${Verbosity:=3}
160
161#D- Low level debug : to bypass lib test checks and stack construction
162#D- Default : value from AA_job if any
163DEBUG_debug=${DEBUG_debug:=false}
164
165#D- TEMPORARY Flag to determine atmospheric resolution
166#D- Default : value from atmospheric driver if any
167RESOL_ATM=${RESOL_ATM:=ALL}
168
169#D- Flag to determine surface resolution
170#D- Default : value from surface driver if any
171RESOL_SRF=${RESOL_SRF:=ALL}
172
173#D- Flag to determine surface resolution
174#D- Default : value from surface driver if any
175RESOL_SBG=${RESOL_SBG:=ALL}
176
177#D- TEMPORARY Flag to determine ocean resolution
178#D- Default : value from ocean driver if any
179RESOL_OCE=${RESOL_OCE:=ORCA2}
180
181#D- TEMPORARY Flag to determine ice resolution
182#D- Default : value from ice driver if any
183RESOL_ICE=${RESOL_ICE:=ORCA2}
184
185#D- TEMPORARY Flag to determine marine biogeochemistry resolution
186#D- Default : value from ice driver if any
187RESOL_MBG=${RESOL_MBG:=ORCA2}
188
[2]189######################################################################
190
[108]191. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
192      ( ${DEBUG_debug} ) && IGCM_debug_Check
193. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
194     ( ${DEBUG_debug} ) && IGCM_card_Check
195. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
196     ( ${DEBUG_debug} ) && IGCM_date_Check
197#-------
198. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
[2]199
200######################################################################
201
202#set -vx
203
204#===========================================
[36]205RUN_DIR=${RUN_DIR_PATH}
[34]206IGCM_sys_MkdirWork ${RUN_DIR}
207IGCM_sys_Cd ${RUN_DIR}
208
[436]209# ------------------------------------------------------------------
210# Test if all was right before proceeding further
211# ------------------------------------------------------------------
212IGCM_debug_Verif_Exit_Post
213
[2]214if [ ${StandAlone} = true ] ; then
215    CARD_DIR=${SUBMIT_DIR}
216else
[647]217    CARD_DIR=${RUN_DIR}
[640]218    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
219    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
220    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
221    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
[2]222fi
223
224#
225# First of all
226#
227IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
228typeset option
229for option in ${config_UserChoices[*]} ; do
230    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
231done
232IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card ListOfComponents
233
[263]234#==================================
235#R_SAVE : Job output directory
[546]236#R_BUFR : Job output buffered directory
[263]237if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
238    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
239    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
[587]240    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
[546]241    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
[263]242    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
243else
244    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
[587]245    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
[546]246    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
[263]247    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
248fi
[591]249
250IGCM_sys_MkdirArchive ${R_FIGR}
[102]251#
[591]252IGCM_sys_TestDirArchive ${R_FIGR}/MONITORING
[102]253if [ $? = 0 ] ; then
254    IGCM_debug_Print 1 "Get MONITORING directory from archive"
[591]255    IGCM_sys_Get_Dir ${R_FIGR}/MONITORING ${RUN_DIR}
[102]256else
257    IGCM_debug_Print 1 "MONITORING first pass. Nothing has been done before"
258fi
[2]259# --------------------------------------------
260# Insert your commands between III...III lines
261# and precise produced directories to save
262# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
263
264for comp in ${config_ListOfComponents[*]} ; do
[253]265    IGCM_debug_Print 1 "################## Component: ${comp} ######################"
[2]266    liste_file_monitoring=""
267    IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp}
268    eval compname=\${config_ListOfComponents_${comp}[0]}                > /dev/null 2>&1
[181]269
270    PATH_monitoring_file=""
[2]271    eval monitoring_file=monitoring01_${compname}_\${RESOL_${comp}}.cfg > /dev/null 2>&1
[251]272    if [[ -d ${CARD_DIR}/POST && -f ${CARD_DIR}/POST/monitoring01_${compname}.cfg ]] ; then
[252]273        PATH_monitoring_file=${CARD_DIR}/POST/monitoring01_${compname}.cfg
[181]274    elif [ -f ${FER_ATLAS}/${monitoring_file} ] ; then
275        PATH_monitoring_file=${FER_ATLAS}/${monitoring_file}
276    else
[251]277        IGCM_debug_Print 1 "No monitoring file found for this component. Was expecting ${monitoring_file}"
278        IGCM_debug_Print 1 "Step to next component"
279        continue
[181]280    fi
[2]281    #
[181]282    if [ X${PATH_monitoring_file} != X"" ] ; then
[250]283        IGCM_debug_Print 1 "Monitoring file used : ${PATH_monitoring_file}"
[134]284        IGCM_debug_Print 1 "Determine which files we need."
[181]285        . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO
286        liste_file_monitoring=$( . monitoring01 -q -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO )
[102]287    fi
[2]288    #
289    if [ ! "X${liste_file_monitoring}" = X ] ; then
[35]290        IGCM_sys_Get /l liste_file_monitoring ${RUN_DIR}
[250]291        IGCM_debug_Print 1 "monitoring01 -c ${CARD_DIR} -p ${comp} --time -t \"${config_UserChoices_JobName} monitoring\" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} ."
292        IGCM_debug_Print 1 "monitoring01 starts ................................................."
[181]293        monitoring01 -c ${CARD_DIR} -p ${comp} --time -t "${config_UserChoices_JobName} monitoring" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} .
[102]294    else
295        IGCM_debug_Print 1 "No time series detected by this command :"
[181]296        IGCM_debug_Print 1 "monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO"
297        . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO
[2]298    fi
299    #
300done
301
302# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
303
304# Save files
[587]305IGCM_sys_Put_Dir MONITORING ${R_FIGR}
[2]306
307# Dods copy
308IGCM_sys_Put_Dods MONITORING
[203]309
[590]310# Clean RUN_DIR_PATH (necessary for cesium and titane only)
[203]311IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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